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0161e74 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 | # Available datasets
The full descriptions of the datasets and the studies of origin can be found in the manuscript. Here we provide the links to access the processed datasets.
## Pretraining data
To download data from CellXGene and build for pretraining, go to the folder [cellxgene](cellxgene) and follow the instructions.
## Datasets for cell type annotation
- Multiple Sclerosis (M.S.) dataset: [link](https://drive.google.com/drive/folders/1Qd42YNabzyr2pWt9xoY4cVMTAxsNBt4v?usp=sharing)
- Myeloid (Mye.) dataset: [link](https://drive.google.com/drive/folders/1VbpApQufZq8efFGakW3y8QDDpY9MBoDS?usp=drive_link)
- hPancreas dataset: [link](https://drive.google.com/drive/folders/1s9XjcSiPC-FYV3VeHrEa7SeZetrthQVV?usp=drive_link)
## Datasets for multi-batch integration
- PBMC 10K: [link](https://docs.scvi-tools.org/en/stable/api/reference/scvi.data.pbmc_dataset.html)
- Perirhinal Cortex dataset: [link](https://drive.google.com/file/d/1rDAxDtvWx1GpJaNhlKBi71f8-psUNppE/view?usp=drive_link)
- COVID-19 dataset: [link](https://drive.google.com/file/d/1eD9LbxNJ35YUde3VtdVcjkwm-f4iyJ6x/view?usp=drive_link)
## Datasets for multi-omics integration
- BMMC dataset: [link](https://drive.google.com/drive/folders/1VRsVugg6vgCq8GG0gGajYsyXfrEtP0jK?usp=sharing)
- 10x Multiome PBMC dataset: [link](https://drive.google.com/drive/folders/163J4Qi7R-awuLiHnWCh-eJD7RPMnb_yK?usp=sharing)
## Datasets for perturbation prediction
- Adamson dataset: [link](https://dataverse.harvard.edu/api/access/datafile/6154417)
- Norman dataset: [link](https://dataverse.harvard.edu/api/access/datafile/6154020)
## Datasets for the GRN analysis
- Immune Human dataset [link](https://figshare.com/ndownloader/files/25717328)
## Datasets for zero-shot integration
- Lung-Kim dataset: [link](https://drive.google.com/file/d/1z_0vWYMhRuRiD1EyhuFtY9ReIR0msWaL/view?usp=sharing)
- COVID-19 dataset: [link](https://drive.google.com/file/d/1eD9LbxNJ35YUde3VtdVcjkwm-f4iyJ6x/view?usp=drive_link)
- Multiple Sclerosis (M.S.) dataset: [link](https://drive.google.com/drive/folders/1Qd42YNabzyr2pWt9xoY4cVMTAxsNBt4v?usp=sharing)
## Datasets for zero-shot integration
- COVID-19 dataset(splitted) : [link](https://drive.google.com/drive/folders/1jSPoPunGQOmd71vDsK0FS7UvmDhGdhQS?usp=sharing)
- Lung-Kim dataset(splitted): [link](https://drive.google.com/drive/folders/1gbfO7VqxCOkfzgHAih6hO88zFv6pd8wO?usp=sharing)
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