dataset_key,doi,id,text,is_acknowledgement,is_dataset,is_software acknowledgement,10.48550/arxiv.2303.07677,doi10.48550/arxiv.2303.07677,"This work was supported in part by the Key R&D Program of Zhejiang under Grant 2022C01018, and by the National Natural Science Foundation of China under Grants U21B2001 and 61973273.",True,False,False acknowledgement,10.48550/arxiv.1801.06216,doi10.48550/arxiv.1801.06216,The research of Bang-Jensen was supported by the Danish research council under grant number 7014-00037B.,True,False,False acknowledgement,10.26434/chemrxiv-2023-707rs-v3,doi10.26434/chemrxiv-2023-707rs-v3,"M.H. thanks the University of Rennes for his PhD fellowship. Dr Gregory Pieters from CEA Saclay (France) is acknowledged for fruitful discussions. M.H., F.B. and Y.T. thank the EUR LUMOMAT project and the Investments for the Future program ANR-18-EURE-0012. L.V. acknowledges financial support from Agence Nationale de la Recherche (ANR-21-CE07-0025-03 MAP). L.V., A.F. and B.L.G. thank the French GENCI/IDRIS-CINES center for high-performance computing resources.",True,False,False acknowledgement,10.48550/arxiv.1612.08713,doi10.48550/arxiv.1612.08713,"This work is part of the research programme of the Netherlands Organisation for Scientific Research (NWO). G.K. acknowledges support from a Starting Grant from the European Research Council under the European Union's Seventh Framework Programme (FP/2007-2013) / ERC Grant Agreement n. [335672]. J.A. acknowledges support from the U. S. Army Research Laboratory and the U. S. Army Research Office under grant number W911NF-14-1-0396, as well as the National Science Foundation under Grant No. NSF PHY11-25915. F.C.M. was supported in part by the National Science Foundation (Grant PHY-1427654). We furthermore thank Shiladitya Banerjee, Chiu Fan Lee, Gunnar Pruessner, Margaret Gardel, Martin Lenz, Michael Murrell, Thibaut Divoux, and Stephan Grill for insightful comments and discussions.",True,False,False acknowledgement,10.48550/arxiv.1904.12191,doi10.48550/arxiv.1904.12191,"This work was partially supported by grants NSF DMS-1613091, CCF-1714305, IIS-1741162, and ONR N00014-18-1-2729, NSF DMS-1418362, NSF DMS-1407813.",True,False,False acknowledgement,10.48550/arxiv.1911.07067,doi10.48550/arxiv.1911.07067,"This work is funded in part by Research Council of Norway project number 263248. The computations in this paper were performed on equipment provided by the Experimental Infrastructure for Exploration of Exascale Computing (eX3), which is financially supported by the Research Council of Norway under contract 270053.",True,False,False acknowledgement,10.31234/osf.io/kbcw4,doi10.31234/osf.io/kbcw4,M.W.S.'s efforts on this paper were partially supported by the National Institute of Mental Health under award number K23MH126211. The content is solely the responsibility of the author and does not necessarily represent the official views of the National Institute of Health.,True,False,False acknowledgement,10.26434/chemrxiv-2024-689f3,doi10.26434/chemrxiv-2024-689f3,"This work was partly supported by the JST START (JPMJSF2303), JSPS KAKENHI (JP23KJ1717, JP23H00304, JP20H05676), The Murata Science Foundation, Research Foundation for Opto-Science and Technology, Takeda Science Foundation, Kyushu University Platform of Inter-/Transdisciplinary Energy Research (Q-PIT) through its ""Module-Research Program"", and Kyushu University Integrated Initiative for Designing Future Society.",True,False,False acknowledgement,10.21203/rs.3.rs-1622372/v1,doi10.21203/rs.3.rs-1622372/v1,"This work was supported by grants from the National Natural Science Foundation of China (no. 81772706, no. 81802525, and no.821172817) and the National Key Research and Development Project (no. 2019YFC1316005).",True,False,False acknowledgement,10.1101/2023.05.11.540381,doi10.1101/2023.05.11.540381,"This work was supported by NSF ABI 1564659, NSF CAREER 2042516 to AS. This work was funded by the National Institute of Food and Agriculture, U.S. Department of Agriculture, Hatch Program under accession number 1008480 and funds from the University of Kentucky Bobby C. Pass Research Professorship to JJO. This research was supported in part by a Research Support Grant from the University of Kentucky Office of the Vice President for Research to DWW and JJO. This research includes calculations carried out on HPC resources supported in part by the National Science Foundation through major research instrumentation grant number 1625061 and by the US Army Research Laboratory under contract number W911NF- 16-2- 0189.",True,True,False acknowledgement,10.48550/arxiv.1010.5141,doi10.48550/arxiv.1010.5141,This material is based upon work supported by the National Science Foundation under Grant No. 1116589.,True,False,False acknowledgement,10.1101/2022.08.10.503487,doi10.1101/2022.08.10.503487,Acknowledgment: This work was supported by A*STAR ID Labs grant to AS and by National Institutes of Health grants R33 AI136097 to DGR and R21 AI157759 to SB.,True,False,False acknowledgement,10.48550/arxiv.2408.10861,doi10.48550/arxiv.2408.10861,This work was supported by the National Science Foundation of China under Grant 62203460 and U22A2059; Major Project of the Natural Science Foundation of Hunan Province (No. 2021JC0004).,True,False,False acknowledgement,10.22541/au.170869776.61634034/v1,doi10.22541/au.170869776.61634034/v1,"This study is part of the Victorian Water and Climate Initiative (VicWaCI), funded by the Department of the Energy, Environment, and Climate Action; the National Environmental Science Program (NESP), funded by the Department of Climate Change, Energy, the Environment and Water; and the Australian Research Council Special Research Initiative for Securing Antarctica's Environmental Future (SAEF) Program (SR200100005). S. A. acknowledges the Australian Research Council's Discovery Project (DP220101468). J. M. A. was partially supported by the Regional and Global Model Analysis component of the Earth and Environmental System Modeling Program of the U.S. Department of Energy's Office of Biological and Environmental Research via National Science Foundation IA 1947282. S.-W. S. was supported by the Korea Environment Industry &Technology Institute (KEITI) through ""Climate Change R&D Project for New Climate Regime."", funded by the Korea Ministry of Environment (MOE) (2022003560004). G. L. Manney was supported by the Jet Propulsion Laboratory (JPL) Microwave Limb Sounder team under JPL subcontract #1521127 to NWRA, and by NSF Climate and Large-scale Dynamics Grant #2015906. This research was undertaken on the NCI National Facility in Canberra, Australia, which is supported by the Australian Commonwealth Government.",True,False,False acknowledgement,10.21203/rs.3.rs-136815/v1,doi10.21203/rs.3.rs-136815/v1,"The staff at the MAX IV Laboratory and DESY are gratefully acknowledged for support during measurements. We acknowledge Edvin Lundgren, Lund University, for enlightening discussions on the oxidation and reduction chemistry of Pd(100). Financial support from the Swedish Research Council, grant numbers 2017-04840, 2017-03871, and 2013-8823, Knut and Alice Wallenberg Foundation under Grant No 2016.0042, the Swedish Foundation for Strategic Research under project number ITM 17-0034, and the Research Council of Norway, project number 280903, Per Westlings foundation is gratefully acknowledged.",True,False,False acknowledgement,10.48550/arxiv.2308.14626,doi10.48550/arxiv.2308.14626,This study was funded by an FRQNT Team Grant (2022-PR-296459).,True,False,False acknowledgement,10.48550/arxiv.2209.15597,doi10.48550/arxiv.2209.15597,"This work was supported by the Cross-ministerial Strategic Innovation Promotion Program (SIP) Second Phase, ""Big-data and AI-enabled Cyberspace Technologies"" by the New Energy and Industrial Technology Development Organization (NEDO).",True,True,False acknowledgement,10.1101/2020.03.17.995753,doi10.1101/2020.03.17.995753,"This study was supported by NIH Grants R01EY024140, R01EY028810, and R21EY028066 (to MCC). Our research is also supported in part by NIH Grant P30EY027125 (NIH CORE grant to MCC), a Presbyterian Health Foundation Research Support Grant (to MCC), a Presbyterian Health Foundation Equipment Grant (to Robert E. Anderson, OUHSC), and an unrestricted grant to the Dean A. McGee Eye Institute from Research to Prevent Blindness Inc. (http://www.rpbusa.org). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.",True,True,False acknowledgement,10.48550/arxiv.2305.12347,doi10.48550/arxiv.2305.12347,"This work was supported by the National Natural Science Foundation of China (62272023, 51991391, 51991395).",True,False,False acknowledgement,10.48550/arxiv.1706.00922,doi10.48550/arxiv.1706.00922,The work is supported by RFBR grant No 17-01-00633 A.,True,False,False acknowledgement,10.1101/385344,doi10.1101/385344,"Research in the Kubicek lab is supported by the Austrian Federal Ministry of Science, Research and Economy, the National Foundation for Research, Technology, and Development. M.O., P.B. and J.F.daS. were supported by FWF grant awarded to J.L. (29555 and 29763).",True,False,False acknowledgement,10.1101/438242,doi10.1101/438242,"We are grateful to all the children, schools, and adult participants who took part in this study. This work was partially funded by the Economic and Social Research Council (ESRC), grant reference: 13115739 awarded to Natasha Kirkham and Denis Mareschal, supporting the PhD of Jessica Massonnié. Alexander Anwyl-Irvine's PhD is funded by the Templeton World Charity Foundation and the Medical Research Council awarded to Duncan Astle (TWCF no: 0159). Adam Flitton's PhD is funded by the ESRC.",True,False,False acknowledgement,10.48550/arxiv.2304.06751,doi10.48550/arxiv.2304.06751,"Acknowledgments We would like to thank Iosif Bena and Wati Taylor for useful discussions. This work was supported in part by the ERC Grant 772408 ""Stringlandscape"". The work of SL was in part supported by the NSF grant PHY-1915071. The work of BF was in part supported by the ERC starting Grant QGuide.",True,False,False acknowledgement,10.1101/729160,doi10.1101/729160,"excellent technical assistance with the TEM, supported by the Microscopy Core of the Center for Systems Biology/Program in Membrane Biology, which is partially an Inflammatory Bowel Disease Grant DK043351 and a Boston Area Diabetes and Endocrinology Research Center (BADERC) Award DK057521. This work was supported by NIH Grant EY020902. The patient derived cells were generated with the support of RP Fighting Blindness (GR595), Fight for Sight (1456/1457), and ERC (CoG_614620). The authors declare no competing interest.",True,False,False acknowledgement,10.48550/arxiv.1711.03091,doi10.48550/arxiv.1711.03091,"The authors would like to thank Yishay Mansour for valuable feedback and discussion. This work was supported in part by NSF grants CCF-1422910, CCF-1535967, IIS-1618714, an Amazon Research Award, a Microsoft Research Faculty Fellowship, a Google Research Award, a NSF Graduate Research Fellowship, and a Microsoft Research Women's Fellowship.",True,False,False acknowledgement,10.48550/arxiv.2110.06710,doi10.48550/arxiv.2110.06710,The second-named and third-named authors received support from the EIPHI Graduate School (contract ANR-17-EURE-0002).,True,False,False acknowledgement,10.21203/rs.3.rs-156767/v1,doi10.21203/rs.3.rs-156767/v1,"This work was supported by Guangxi Key Laboratory of Trusted Software (KX202049), Guangxi science and technology base and talent project (2020AC19134), National Natural Science Foundation of China (41504037), as well as the National key R & D plan of China (2018YFC1503806). In the process of the project, we got the professional help and guidance from Professor Li Jingchao, Professor Wang Chengxi, Dr. Zheng Xiao and other teachers from the development center of China Geological Survey. We also expressed our thanks for the valuable opinions on the algorithm used in the project.",True,False,False acknowledgement,10.48550/arxiv.1807.00664,doi10.48550/arxiv.1807.00664,"Acknowledgement This work was partially supported by the Wallenberg AI, Autonomous Systems and Software Program (WASP) funded by the Knut and Alice Wallenberg Foundation",True,False,True acknowledgement,10.1101/342816,doi10.1101/342816,This work was supported by the European Research Council (EVOBREED) [322621] and a Gatsby Fellowship [AT3273/GLE].,True,False,False acknowledgement,10.21203/rs.3.rs-1685436/v1,doi10.21203/rs.3.rs-1685436/v1,"The authors are also grateful for the support to this study given by NASA BPS, NASA MSFC, NASA JSC, NSF-CASIS, and Teledyne-Brown Engineering. | This work was supported by NASA Grant 80NSSC20K1726 and NSF Grant 1929134.",True,True,False acknowledgement,10.48550/arxiv.0705.3524,doi10.48550/arxiv.0705.3524,The author is supported by Grand-in-Aid for JSPS fellowships.,True,False,False acknowledgement,10.48550/arxiv.2304.05476,doi10.48550/arxiv.2304.05476,The authors thank Universitätsrechenzentrum Greifswald for supporting this work by providing computational resources. R.K. acknowledges funding through a 'María Zambrano' postdoctoral grant at University of Barcelona financed by the Spanish Ministerio de Universidades and the European Union (Next Generation EU/PRTR).,True,False,False acknowledgement,10.1101/2021.12.16.472014,doi10.1101/2021.12.16.472014,"This research was supported by National Institutes of Health award numbers R01-CA228358 (M.R.M.vdB), R01-CA228308 (M.R.M.vdB), R01-HL123340 (M.R.M.vdB), R01-HL147584 (M.R.M.vdB), P01-CA023766 (M.R.M.vdB), R00-CA176376 (J.A.D.), R01-HL145276 (J.A.D.), P01-AG052359 (J.A.D and M.R.M.vdB), and the NCI Cancer Center Support Grants P30-CA015704 (J.A.D.) and P30 CA008748 (M.R.M.vdB). M.R.M.vdB also received support from the Starr Cancer Consortium, the Tri-Institutional Stem Cell Initiative, The Lymphoma Foundation, The Susan and Peter Solomon Divisional Genomics Program, Cycle for Survival, and the Parker Institute for Cancer Immunotherapy. J.A.D received additional support from a Scholar Award from the American Society of Hematology (J.A.D.); the Mechtild Harf (John Hansen) Award from the DKMS Foundation for Giving Life (J.A.D.); the Cuyamaca Foundation (J.A.D.); and the Bezos Family Foundation (J.A.D.). LJ received support from the European Molecular Biology Organization (ALTF-431-2017) and the MSK Sawiris Foundation.",True,True,False acknowledgement,10.48550/arxiv.2403.18676,doi10.48550/arxiv.2403.18676,"JMD acknowledges support from the Olle Engkvist Foundation: 194-0734 and the Knut and Alice Wallenberg Foundation: 2019.0154. CV acknowledges support from the Swedish Research Council (grant number 2022-04486) FZ acknowledges support from the Ministerio de Universidades, el Plan de Recuperación, Transformación y Resilencia y la Universidad Autónoma de Madrid: CA1/RSUE/2021-00352 and the MSCA H2020 programme: 101034324.",True,False,False acknowledgement,10.1101/472092,doi10.1101/472092,"This work was supported by Bundesministerium für Bildung und Forschung (BMBF, 0315892B), DFG (EXC306), University of Lübeck (P01-2012), as well as by the Swiss National Science Foundation (Schweizerischer Nationalfonds, SNF 31003A_156031) the Horizon 2020 program of the European Union (M.R.).",True,False,False acknowledgement,10.31234/osf.io/eanku,doi10.31234/osf.io/eanku,"This research was supported by NSF grant BCS-1255538, the John Templeton Foundation ""Varieties of Understanding"" project, a John S. McDonnell Foundation Scholar Award to TMG, and the Moore-Sloan Data Science Environment at NYU.",True,True,False acknowledgement,10.1101/2022.02.13.480233,doi10.1101/2022.02.13.480233,This work is supported by National Key Research and Development Program of China (2020YFA0907803) and Xbiome Biotech Co. Ltd.,True,False,False acknowledgement,10.48550/arxiv.2410.04984,doi10.48550/arxiv.2410.04984,We thank Yanyi Liu and Angelos Pelecanos for collaborating on an earlier stage of this project. We thank the Simons Institute for the Theory of Computing for hosting the Meta-Complexity program where this collaboration began. B. Cavalar acknowledges support of Royal Society University Research Fellowship URF\R1\211106. Eli Goldin is supported by a NSF Graduate Student Research Fellowship.,True,False,False acknowledgement,10.21203/rs.3.rs-20962/v2,doi10.21203/rs.3.rs-20962/v2,"This research was funded by the National Natural Science Foundation of China (31972964), the Fundamental Research Funds for the Central Universities (2452019168) and Programme of Introducing Talents of Innovative Discipline to Universities (Project 111) from the State Administration of Foreign Experts Affairs (#B18042) ""Crop breeding for disease resistance and genetic improvement"". The funding bodies have no role in the design of the study and collection, analysis and interpretation of data, and in writing the manuscript, but just provide the financial supports.",True,False,False acknowledgement,10.48550/arxiv.2110.11457,doi10.48550/arxiv.2110.11457,"The authors thank I. El Mahi, and A. Ratnani for fruitful discussions and helpful comments. This work was partially supported by the HPC Project Alkhwarizmi department, MSDA-UM6P.",True,False,False acknowledgement,10.21203/rs.3.rs-1954301/v1,doi10.21203/rs.3.rs-1954301/v1,"Fundings/Support: This study was supported by grants (numbers 19H01114, 18KK0253, and 20K09784) from the Ministry of Education, Culture, Sports, Science and Technology of Japan; the Translational Research program; the Strategic Promotion for Practical Application of Innovative Medical Technology (TR-SPRINT) from the Japan Agency for Medical Research and Development (AMED) and Japan Glaucoma Society Research Project Support Program. We would like to thank Editage (www.editage.com) for English language editing.",True,True,False acknowledgement,10.48550/arxiv.2407.05278,doi10.48550/arxiv.2407.05278,"Acknowledgments: This work was supported by the Analytical Center for the Government of the Russian Federation (agreement identifier 000000D730324P540002, grant No 70-2023-001317 dated 28.12.2023.",True,False,False acknowledgement,10.48550/arxiv.2102.12626,doi10.48550/arxiv.2102.12626,"This work was supported by the Natural Science Foundation of Jiangsu Province (BK20181167, BK20180042), National Natural Science Foundation of China (61675142, 61875143), Opening Project of State Key Laboratory of High Performance Ceramics and Superfine Microstructure (SKL201912SIC), and the Priority Academic Program Development (PAPD) of Jiangsu Higher Education Institutions.",True,False,False acknowledgement,10.21203/rs.3.rs-1693987/v1,doi10.21203/rs.3.rs-1693987/v1,"This work was supported by the USDA National Institute of Food and Agriculture under award number 2018-38640-28418 through the Western Region SARE program under project number SW19-906. The USDA National Institute of Food and Agriculture, McIntire Stennis grant number 9047M, managed by the College of Tropical Agriculture and Human Resources. USDA APHIS Farm Bill AP19PPQS&T00C159 (APP-10412). The strains were maintained by grant support from National Science Foundation (Award No. 1561663).",True,False,False acknowledgement,10.1101/2023.07.07.23292355,doi10.1101/2023.07.07.23292355,This study was funded by Fond de Recherche et Enseignement en Orthopédie de Sherbrooke (FREOS). GL received salary support by the Fonds de recherche du Québec – Santé (FRQS).,True,False,False acknowledgement,10.1101/2022.11.14.515727,doi10.1101/2022.11.14.515727,"This work was equally supported by a National Research Foundation of Korea (NRF) grant (2016R1A5A2945889 to I.H. and J.Y.A.) funded by the Ministry of Science and ICT (MSIT) of Korea and the Technology Innovation Program (20008413 to J.Z., Z.C., J.H., and S.P.) funded by the Ministry of Trade, Industry, & Energy (MOTIE) of Korea, and the Fostering Global Talents for Innovative Growth Program (P0008746 to W.L.) supervised by the Korea Institute for Advancement of Technology (KIAT).",True,False,False acknowledgement,10.48550/arxiv.2110.11684,doi10.48550/arxiv.2110.11684,"This work was supported by Natural Science Foundation of China, Grant/Award Number: 61836013; Beijing Natural Science Foundation, Grant/Award Number: 4212030; Beijing Technology, Grant/Award Num-ber:Z191100001119090; Key Research Pr gram of Frontier Sciences, CAS, Grant/Award Number:ZDBS-LY-DQC016.",True,True,False acknowledgement,10.21203/rs.2.19185/v2,doi10.21203/rs.2.19185/v2,This work was funded by the National Natural Sciences Foundation of China (31571986) and the National Basic Research Program of China (2013CB127502).,True,False,False acknowledgement,10.1101/2024.03.23.585817,doi10.1101/2024.03.23.585817,"The authors thank C. Duvall for use of IVIS Imaging System. We thank the core facilities of the VUMC Flow Cytometry Shared Resource, supported by the Vanderbilt Digestive Disease Research Center (DK058404) and the Vanderbilt Ingram Cancer Center (P30 CA68485), the Vanderbilt Institute of Nanoscale Sciences and Engineering (VINSE), the Vanderbilt University Small Molecular NMR Facility, and Translational Pathology Shared Resource supported by NCI/NIH Cancer Center Support Grant P30CA068485. This research was supported by grants from the Susan G. Komen (CCR19609205 to JTW), The National Institutes of Health (R01 CA245134 to JTW), the National Science Foundation (CBET-1554623 to JTW), a Vanderbilt Ingram Cancer Center (VICC) Ambassador Discovery Grant (JTW), VICC Support Grant (P30 CA068485), and funds provided by the Vanderbilt University School of Engineering (JTW). BRK acknowledges postdoctoral funding support from the PhRMA Foundation Postdoctoral Fellowship in Drug Delivery. AJK was supported by the NIH Microenvironmental Influences in Cancer Training Grant (T32CA009592). TLS acknowledge funding support through the National Science Foundation Graduate Research Fellowship Program under grant number 193793. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. Schematics were made using Biorender.com.",True,True,False acknowledgement,10.1101/2021.01.06.425147,doi10.1101/2021.01.06.425147,"We thank Dr. Nick Dyson for critical reading of the manuscript. We thank Michael Koulopoulos, Dr. Narges Rashidi, MGH Pathology Core Facility, MGH Flow and Mass Cytometry Core Facility for experimental assistance. This work was supported by funding from the ESSCO Breast Cancer Research Fund (S.M), BCRF Drug Research Collaborative (S.M.) NIH/NCI (U01CA214297; S.M., D. A. H., M.T.) NIH P41 BioMEMS Resource Center (EB002503; M.T.), NIH/NIBIB (EB012493; M.T.), the Howard Hughes Medical Institute (D.A.H.), NIH/NCI (2R01CA129933; D.A.H.), National Foundation for Cancer Research (D.A.H.), Shriners Hospital for Children Mass Spectrometry Special Shared Facility (N.M.K.), Harvard Medical School Eleanor and Miles Shore Fellowship (N.M.K) and Tosteson & Fund for Medical Discovery Fellowship (N.M.K.).",True,False,False acknowledgement,10.48550/arxiv.2407.15725,doi10.48550/arxiv.2407.15725,This work has been supported by the Swiss National Science Foundation through the NCCR SPIN (grant no. 51NF40-180604).,True,False,False acknowledgement,10.48550/arxiv.2002.10754,doi10.48550/arxiv.2002.10754,"Acknowledgements. P.-T. Nguyen is supported by Czech Science Foundation, project GJ19 - 14413Y. Part of this research was carried out by P.-T. Nguyen during a visit at the Hausdorff Research Institute for Mathematics (HIM), through the Trimester Program ""Evolution of Interfaces"". P.-T. Nguyen gratefully acknowledges the support of the HIM. The authors wish to thank Professor L. Véron for many useful comments which help to improve the manuscript.",True,False,False acknowledgement,10.48550/arxiv.2311.02307,doi10.48550/arxiv.2311.02307,"S.S. is supported in part by the National Key Research and Development Program of China under Grant No. 2022YFA1604900, 2020YFE0202002, and the National Natural Science Foundation of China under Grant No. 12175084, 11890710 (11890711). Z.-W.L is supported by the National Science Foundation under Grant No. 2012947 and 2310021.",True,True,False acknowledgement,10.1101/2022.11.28.518276,doi10.1101/2022.11.28.518276,"This work was supported by DARPA (W922NF-20-2-0137) to TCB. In addition, this work was made possible in part through support from an Institutional Development Award (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health (Grant # 2P20GM103432). MHP was supported in part by the Wyoming NASA Space Grant Consortium, NASA Grant #80NSSC20M0113, INBRE undergraduate research grant through the Institutional Development Award (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health under Grant #2P20GM103432, and the Wyoming Research Scholars Program. The authors are thankful to members of the Boothby Lab for discussions and reading of this manuscript. We thank members of the Water and Life Interface Institute (WALII), supported by NSF DBI grant #2213983, for helpful discussions.",True,True,False acknowledgement,10.48550/arxiv.2308.04605,doi10.48550/arxiv.2308.04605,"This work is supported in part by the US Department of Energy SciDAC program DE-SC0021360 and DE-SC0023193, National Science Foundation Division of Information and Intelligent Systems IIS-1955764, and Los Alamos National Laboratory Contract C3435.",True,False,False acknowledgement,10.21203/rs.3.rs-2777537/v1,doi10.21203/rs.3.rs-2777537/v1,"This study was supported in part by funds from the MECP2 Duplication Foundation and part with federal funds from the US Department of Agriculture, Agricultural Research Service (Cooperative Agreement Number 58-3092-5-001). The content of this publication does not necessarily reflect the views or policies of the US Department of Agriculture, nor does mention of trade names commercial products, or organizations imply endorsement by this agency. | DP is supported by the International Rett Syndrome Foundation (IRSF grant #3701-1), Rett Syndrome Research Trust, and NINDS (1K23 NS125126-01A1), and BS and DGG are supported by the Blue Bird Circle Foundation. The MECP2 Duplication Foundation funded the establishment and maintenance of the online MDS server. MA receives salary support from MECP2 Duplication Foundation.",True,False,False acknowledgement,10.48550/arxiv.2112.06523,doi10.48550/arxiv.2112.06523,"We thank Y. Xu for helpful discussions. This research was funded by the National Natural Science Foundations of China (Grant No. 12034004, No. 11774061, and No. 11774306), the Shanghai Municipal Science and Technology (Major Project Grant No. 2019SHZDZX01 and No. 20ZR1405300), the National Research and Development Program of China, No. 2016YFA0300503, and the Strategic Priority Research Program of Chinese Academy of Sciences (No. XDB28000000).",True,False,False acknowledgement,10.1101/2021.09.10.459444,doi10.1101/2021.09.10.459444,This work was funded by the Kenneth Rainin Foundation (Innovator Award 2016-1280). | The flow cytometry work was performed in the Flow Cytometry Core Facility of the Life Science Complex and supported by funding from the Canadian Foundation for Innovation. | AS is supported by a Canadian Institute of Health Research (CIHR) fellowship (170921). | YL was supported by a Richard and Edith Strauss Postdoctoral Fellowship in Medicine.,True,False,False acknowledgement,10.48550/arxiv.2208.11322,doi10.48550/arxiv.2208.11322,"The second author is supported by the University Grants Commission, Govt. of India.",True,False,False acknowledgement,10.48550/arxiv.1909.00897,doi10.48550/arxiv.1909.00897,"The authors would like to thank DGAPA-UNAM for financial support by grants AG100317, IA102019 and DIGED-USAC.",True,False,False acknowledgement,10.1101/2021.08.06.455364,doi10.1101/2021.08.06.455364,Funding: This work was supported by an SNF grant (S-41260-01-01) to T.K and a Deutsche Forschungsgemeinschaft grant Lu375/15-1 to H.J.L.,True,False,False acknowledgement,10.21203/rs.3.rs-3246214/v1,doi10.21203/rs.3.rs-3246214/v1,"This work was supported by the Key Research and Development Program of Sichuan Province (2023YFS0368).In addition, during the writing process of this article, we received assistance and support from Dr. Xiaoyu Gan from the School of Architecture and Environment at Sichuan University, and Dr. Diwei Tang from the College of Forestry and Horticulture at Hubei Minzu University. We would like to express our gratitude for their help.",True,False,False acknowledgement,10.48550/arxiv.2102.07288,doi10.48550/arxiv.2102.07288,This work is funded in part by National Science Foundation Smart and Connected Communities grant NSF-1831698.,True,False,False acknowledgement,10.48550/arxiv.0807.2286,doi10.48550/arxiv.0807.2286,"Acknowledgements. This paper is part of my PhD thesis. I would like to thank my advisor Michel Emsalem for his guidance and his constant encouragement. This work has been partially supported by the Università degli Studi di Milano. I also would like to thank Matthieu Romagny, Carlo Gasbarri and Dajano Tossici for useful comments and discussions. Finally I would like to thank an anonymous referee for his suggestions, corrections and some improvements.",True,False,False acknowledgement,10.1101/2022.02.26.482011,doi10.1101/2022.02.26.482011,"The research was supported in part by the DAAD funded by the Bundesministeriums für Bildung und Forschung (BMBF) (PPP USA 2018, 57387214) as well as the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement no. 812954.",True,False,False acknowledgement,10.31235/osf.io/fe4rj,doi10.31235/osf.io/fe4rj,"This research was funded by the Volkswagen Foundation, project ""Transformations of privacy."" The funding source had no involvement in the study design, data collection, analysis and interpretation of data, writing of the report, and decision to submit the article for publication.",True,True,False acknowledgement,10.1101/2021.12.21.473683,doi10.1101/2021.12.21.473683,The work was supported by EMBL and the European Research Council (ERC) Advanced Grant COREFEAR to C.T.G.,True,False,False acknowledgement,10.1101/2022.02.28.482127,doi10.1101/2022.02.28.482127,"S.W. is supported in part by an NIDCR K99 Pathway to Independence Award (K99 DE27982). This work is supported by the NIH Intramural Research Program (NIDCR, ZIA DE000525).",True,False,False acknowledgement,10.48550/arxiv.1210.2594,doi10.48550/arxiv.1210.2594,"ACKNOWLEDGMENT. Both authors funded have been partially funded by Project MTM2011-24696 (Spain). We are grateful to A. de Pablo, F. Quirós and A. Rodriguez for discussions of the topic, and to the referee for enlightening suggestions.",True,False,False acknowledgement,10.21203/rs.3.rs-47935/v1,doi10.21203/rs.3.rs-47935/v1,"Research funding was provided for by AstraZeneca pharmaceuticals. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.",True,False,False acknowledgement,10.21203/rs.3.rs-418346/v1,doi10.21203/rs.3.rs-418346/v1,This work was supported by the National Nature Science Foundation of China (Grant No. 81773247).,True,False,False acknowledgement,10.48550/arxiv.physics/0011039,doi10.48550/arxiv.physics/0011039,One of the authors (AK) is grateful to the Humboldt Foundation for support of this work and to his co-author for his hospitality.,True,False,False acknowledgement,10.1101/2023.12.03.569795,doi10.1101/2023.12.03.569795,"This work was supported by Kakenhi Grant-in-Aid for Scientific Research (23H02492, 22K06189) from the Japan Society for the Promotion of Science. X. Z is supported by JST SPRING (JPMJSP2108).",True,False,False acknowledgement,10.48550/arxiv.1910.06043,doi10.48550/arxiv.1910.06043,This work was supported in part by the National Natural Science Foundation of China (Grant No. 61971382),True,False,False acknowledgement,10.1101/2022.02.17.480956,doi10.1101/2022.02.17.480956,"by NIH grants R01 AI130471 and CA228019, and award I01 BX-002919 from the Department of Veterans Affairs to ECB. TTD was the recipient of a fellowship under NIH training grant T32 AI07290 from the NIAID and T32 HL098049 from the National Heart, Lung, and Blood Institute, and was supported by an AHA Postdoctoral Fellowship and the Stanford Cardiovascular Institute. KB was supported by NIH F32 CA200103. YW was supported by Knut and Alice Wallenberg Foundation KAW 2018.0423. MX was supported by the Tobacco-Related Disease Research Program of University of California, grant T31FT1867. SR and KRH was funded by The New York Stem Cell Foundation (NYSCF-Robertson Investigator to KRH). PB is supported by GINOP 2.3.2-15-2016-00050 and EFOP 3.6.1-16-2016-00004 grants.",True,False,False acknowledgement,10.48550/arxiv.1911.05299,doi10.48550/arxiv.1911.05299,"This work was partially supported by TIM through the research contract ""Multi-access Edge Computing"", and by the European Commission through the Horizon 2020 project 5G-CARMEN (grant agreement no. 825012).",True,False,False acknowledgement,10.1101/2023.04.21.537664,doi10.1101/2023.04.21.537664,"All Authors acknowledge the funding support from EMBL. We would like to acknowledge the Flow Cytometry Unit of the Center for Genomic Regulation for consultation in data acquisition and analysis, Joana Rafaela Mendonca da Silva for the help with data analysis.",True,True,False acknowledgement,10.31234/osf.io/f59w4,doi10.31234/osf.io/f59w4,"This work was supported by a fellowship of the Research Foundation Flanders (FWO), awarded to KH (12J9722N).",True,False,False acknowledgement,10.48550/arxiv.1110.1397,doi10.48550/arxiv.1110.1397,The second author gratefully acknowledges support from the Sloan Foundation and the National Science Foundation.,True,False,False acknowledgement,10.21203/rs.3.rs-4332983/v1,doi10.21203/rs.3.rs-4332983/v1,"This study was supported by the National Natural Science Foundation of China (NO. 82360441), projects funded by the Science and Technology Department of Jilin Province (No.20200201492JC and YDZJ202201ZYTS161).",True,False,False acknowledgement,10.26434/chemrxiv-2022-9pl01,doi10.26434/chemrxiv-2022-9pl01,assistance. Generous financial support from SNSF (20020_182633) and ERC (CoG 653) are greatly acknowledged.,True,False,False acknowledgement,10.21203/rs.3.rs-274063/v1,doi10.21203/rs.3.rs-274063/v1,"This study was funded by the Swedish Research Council for Health, Working life and Welfare (FORTE, grant number 2016-07194 and 2016-00426), and the Swedish Ministry of employment. The funders had no role in the study design, data analysis, or preparation of the manuscript.",True,False,False acknowledgement,10.1101/2020.10.20.20215806,doi10.1101/2020.10.20.20215806,This work was supported by the National Natural Science Foundation of China (Grant number: 81872704).,True,False,False acknowledgement,10.48550/arxiv.0706.3546,doi10.48550/arxiv.0706.3546,"This research is sponsored by grants from the Laboratory Directed Research and Development Program of Oak Ridge National Laboratory (ORNL), managed by UT-Battelle, LLC for the U. S. Department of Energy under Contract No. DE-AC05-00OR22725 and the Natural Sciences and Engineering Research Council of Canada and Canadian Foundation for Innovation.",True,False,False acknowledgement,10.48550/arxiv.1605.07321,doi10.48550/arxiv.1605.07321,"The research by Pavle V. M. Blagojević leading to these results has received funding from DFG via Collaborative Research Center TRR 109 ""Discretization in Geometry and Dynamics."" Also supported by the grant ON 174008 of the Serbian Ministry of Education and Science. | The research by Günter M. Ziegler received funding from DFG via the Research Training Group ""Methods for Discrete Structures"" and the Collaborative Research Center TRR 109 ""Discretization in Geometry and Dynamics.""",True,False,False acknowledgement,10.21203/rs.3.rs-1486390/v1,doi10.21203/rs.3.rs-1486390/v1,"The authors thank Dr. José A. Correa, Department of Mathematics and Statistics, McGill University for his advice in the statistical analysis of the behaviour data and representation of the results. The work was supported by a Natural Sciences and Engineering Research Council of Canada (NSERC) grant to M.E.S. and the behaviour equipment and Ethovision XT software was purchased with The Canadian Foundation for Innovation Fund. S.C.N. thanks Fonds Québécois de la Recherche sur la Nature et les Technologies (FRQNT) for a Doctoral Research Scholarship. Funding agencies had no role in the study design, collection, analysis or interpretation of data, or writing of the manuscript.",True,False,False acknowledgement,10.48550/arxiv.2403.15545,doi10.48550/arxiv.2403.15545,"N.B., T.M., and A.V. acknowledge support by the DFG cluster of excellence ORIGINS funded by the Deutsche Forschungsgemeinschaft (DFG) under Germany's Excellence Strategy - EXC-2094390783311. The work of N.B. is supported by the DFG Grant No. BR 4058/5-1 ""Open Quantum Sytems and Effective Field Theories for hard probes of hot and/or dense medium"". N.B., T.M., and A.V. acknowledge support from STRONG-2020, European Union's Horizon 2020 research and innovation program under grant agreement No. 824093. M.S. was supported by the U.S. Department of Energy, Office of Science, Office of Nuclear Physics (Nuclear Theory) under contract number DE-SC0013470. P.V.G. was supported by the U.S. Department of Energy Award No. DE-SC0019095. P.V.G. is grateful for the support and hospitality of the Fermilab theory group. Fermilab is operated by Fermi Research Alliance, LLC under Contract No. DE-AC02-07CH11359 with the United States Department of Energy.",True,False,False acknowledgement,10.48550/arxiv.1811.09473,doi10.48550/arxiv.1811.09473,"¹This work was supported by the National Natural Science Foundation of China under Grants 41431175, 61471274, 61771349, and 61711530239.",True,False,False acknowledgement,10.21203/rs.3.rs-16949/v1,doi10.21203/rs.3.rs-16949/v1,"JME - supported by the National Institutes of Health (NIH) through Grant Numbers R01HD079076 and R03HD094577: Eunice Kennedy Shriver National Institute of Child Health & Human Development; National Center for Medical Rehabilitation Research. DMW – data for the SYMBIOME project were supported by a Canadian Pain Society Early Career Investigator Award, an Ontario Ministry of Research and Innovation Early Researcher Award, and funding from the Strategy for Patient-Oriented Research (SPOR) program for chronic pain jointly funded by the Canadian Institutes of Health Research and matching industry partners. All funders were arm’s length and had no influence on the interpretation or reporting of results. | Joy MacDermid was supported by a Canadian Institutes of Health Research Chair in Gender, Work and Health and the Dr. James Roth Chair in Musculoskeletal Measurement and Knowledge Translation.",True,True,False acknowledgement,10.26434/chemrxiv-2022-n9d4z,doi10.26434/chemrxiv-2022-n9d4z,"We gratefully acknowledge The Royal Society [University Research Fellowship, UF140161 and URF\R\201019 (to J.A.B.), URF Appointed Grant RG150444 and URF Enhancement Grant RGF\EA\180031], Pfizer and Imperial College London for studentship funding (M.D. and J.J.R.) and EPSRC Centre for Doctoral training in Next Generation Synthesis and Reaction Technology (EP/S023232/1) for a studentship to H.A.B]. We thank Richard P. Loach and Thomas Knauber (Pfizer) for valuable discussion and training. A. J. S. thanks the EPSRC Centre for Doctoral Training in Synthesis for Biology and Medicine for a studentship (EP/L015838/1), the Oxford-Radcliffe Scholarship for a studentship, and the EPSRC Doctoral Prize (EP/T517811/1) for support. This work used the Cirrus UK National Tier-2 HPC Service at EPCC (http://www.cirrus.ac.uk) funded by the University of Edinburgh and EPSRC (EP/P020267/1).",True,False,False acknowledgement,10.48550/arxiv.1206.6748,doi10.48550/arxiv.1206.6748,"* Work partially supported by DGI grant MTM2010-21206-C02-02. | Work partially supported by the Caixa Castelló Foundation, and DGI grant MTM2010-21206-C02-02.",True,False,False acknowledgement,10.1101/572370,doi10.1101/572370,"KMT received funding from the NSF Graduate Research Fellowship Program DGE1144152, DEG1745303. JMG's lab is supported by NIHMH116223, the Harvard-Armenise Foundation, and the Kaneb family. We thank Ricardo Henriques for the LaTeX bioRxiv paper template.",True,False,False acknowledgement,10.48550/arxiv.2312.15497,doi10.48550/arxiv.2312.15497,"The author would like to thank the Engineering and Physical Sciences Research Council (EPSRC) grants no. EP/T021969/1 (Multi-energy Control of Cyber-Physical Urban Energy System), EP/S00078X/2 (Supergen Energy Networks hub 2018) and EP/Y016114/1 (Supergen Energy Networks Impact Hub 2023) for supporting this work.",True,False,False acknowledgement,10.48550/arxiv.2010.14846,doi10.48550/arxiv.2010.14846,"Aknowledgements. The authors would like to thank Camillo De Lellis for his interest in the problem and some preliminary discussions. This work was developed while R. T. was finishing his PhD at the University of Zürich, and is now supported by the SNF Grant 200021_182565. J. H. was partially supported by the German Science Foundation DFG in the context of the Priority Program SPP 2026 Geometry at Infinity.",True,False,False acknowledgement,10.26434/chemrxiv.13077374.v1,doi10.26434/chemrxiv.13077374.v1,"This work was supported by the U.S. National Science Foundation (No. CHE-1856342). YM was supported by China Scholarship Council during her stay at USC. IVP and BLG thank the Russian Science Foundation (17-13-01051) for the financial support of this study. IVP, BLG, and AVN acknowledge the use of computing facilities of supercomputer resources of the Joint Supercomputer Center of the Russian Academy of Sciences and the equipment of the shared research facilities of HPC computing resources at the Lomonosov Moscow State University.",True,False,False acknowledgement,10.1101/2023.08.17.553724,doi10.1101/2023.08.17.553724,"This work was supported by the NIH-DP2GM126898 grant (awarded to H.Y.) and American Heart Association Predoctoral fellowship (#20PRE35120162, awarded to T.L.).",True,False,False acknowledgement,10.48550/arxiv.2405.10361,doi10.48550/arxiv.2405.10361,"We thank the referee for the detailed comments. The au- thors would like to thank Luke Keyte and Dylan T. Natoewal for the use- ful discussions on the DALI modelling. In addition, Michiel Hogerheijde is thanked for the discussion on water in the HD 100546 disk. This work is sup- ported by grant 618.000.001 from the Dutch Research Council (NWO). As- trochemistry in Leiden is supported by funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and inno- vation programme (grant agreement No. 101019751 MOLDISK), by the Nether- lands Research School for Astronomy (NOVA). This paper makes use of the following ALMA projects: 2011.0.00863.S, 2015.1.00806.S, 2016.1.00344.S, 2018.1.00141.S, 2021.1.00738.S. ALMA is a partnership of ESO (representing its member states), NSF (USA) and NINS (Japan), together with NRC (Canada), MOST and ASIAA (Taiwan), and KASI (Republic of Korea), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO and NAOJ. The National Radio Astronomy Observatory is a facil- ity of the National Science Foundation operated under cooperative agreement by Associated Universities, Inc.",True,False,False acknowledgement,10.48550/arxiv.1601.05742,doi10.48550/arxiv.1601.05742,The author would like to thank Tiziano Peraro for useful discussions. This work is supported by Fondazione Cassa di Risparmio di Padova e Rovigo (CARIPARO) and by Padua University Project CPDA144437. The Feynman diagrams depicted in this paper were generated using FEYNARTS [22].,True,False,False acknowledgement,10.1101/2021.08.30.458274,doi10.1101/2021.08.30.458274,"This work was supported by Skoltech NGP Program (Skoltech-MIT joint project) and by the Russian Science Foundation (Grant 19-74-00011 to M. L. Sokolova). The work was also supported by the UTMB Department of Biochemistry and Molecular Biology and by the UTMB Sealy Center for Structural Biology and Molecular Biophysics. The MD work was performed using the computing facilities of the Texas Advanced Computing Center (TACC, http://www.tacc.utexas.edu) at The University of Texas for which we are very grateful. We thank the Stanford-SLAC Cryo-EM Facilities, supported by Stanford University, SLAC and the National Institutes of Health S10 Instrumentation Programs that were used to collect the AR9 nvRNAP holoenzyme cryo-EM data. We acknowledge the use of the Advanced Photon Source, a U.S. Department of Energy (DOE) Office of Science User Facility operated for the DOE Office of Science by Argonne National Laboratory under Contract No. DE-AC02-06CH11357. We thank the staff of the LS-CAT Sector 21 beamlines that is supported by the Michigan Economic Development Corporation and the Michigan Technology Tri-Corridor (Grant 085P1000817). We acknowledge the use of the Berkeley Center for Structural Biology (supported in part by the Howard Hughes Medical Institute) at the Advanced Light Source (a Department of Energy Office of Science User Facility under Contract No. DE-AC02-05CH11231) and we thank the staff of the beamline 5.0.2.",True,False,False acknowledgement,10.26434/chemrxiv-2022-5gkr7,doi10.26434/chemrxiv-2022-5gkr7,"This material is based upon work supported by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences, Computational Chemical Sciences program under Award Number DE-SC0019463. Summer research for N.N. was supported by the South Dakota Governor's Office of Economic Development through the Center for Fluorinated Functional Materials. Computations supporting this project were performed on High Performance Computing systems at the University of South Dakota, funded by NSF Award OAC-1626516.",True,False,False acknowledgement,10.21203/rs.3.rs-2869313/v1,doi10.21203/rs.3.rs-2869313/v1,"We would like to acknowledge the families of individuals with FXS and the controls who participated in this study. We also want to thank the clinical research coordinators for their assistance with data collection and data entry. We also appreciate the support from Dr. Elizabeth Berry-Kravis at Rush University for testing for FMR1 gene CGG expansion and gene methylation. This work was funded by U54HD082008 (CAE), U54HD104461 (CAE), and K23HD101416 (LMS).",True,True,False acknowledgement,10.48550/arxiv.2308.01925,doi10.48550/arxiv.2308.01925,"Funding: This work has been supported by PETRAS National Centre of Excellence for IoT Systems Cybersecurity, which has been funded by the UK EPSRC [under grant number EP/S035362/1], the Software Sustainability Institute [grant number: EP/S021779/1], and by the Cisco Research Centre [grant number CG1525381].",True,False,False acknowledgement,10.48550/arxiv.1707.06687,doi10.48550/arxiv.1707.06687,"*This work has been supported by the projects UBACYT 20020130 100533BA, PIP-CONICET 11220150100483CO, and PICT 2015-0366. The first named author is a CONICET postdoctoral fellow. The second named author is a research member of CONICET (Argentina) and a Senior Associate of ICTP Associate Scheme.",True,False,False acknowledgement,10.21203/rs.3.rs-640628/v1,doi10.21203/rs.3.rs-640628/v1,This work is partially supported by grant in aid from Iran National Science Foundation (INSF) to HS (grant No: 96016699).,True,False,False acknowledgement,10.26434/chemrxiv.11972031.v1,doi10.26434/chemrxiv.11972031.v1,"Acknowledgements. OAA and JG acknowledge financial support for this work from the National Science Foundation (Award Number CBET - 1932788). PJD, MAA and MS acknowledge financial support of the Catalysis Center for Energy Innovation, a U.S. Department of Energy – Energy Frontier Research Center under Grant DESC0001004.",True,False,False acknowledgement,10.26434/chemrxiv-2022-x9ztv,doi10.26434/chemrxiv-2022-x9ztv,The authors thank Jonathan Melamed for his courageous work as an alpha-tester for the Ringtail program and for assistance gathering data size information. This work was supported by the National Institutes of Health grants R24-GM145962 and R01-GM069832.,True,True,False acknowledgement,10.1101/2020.06.16.155705,doi10.1101/2020.06.16.155705,"We would like to thank Dr. Hong Yu and Dr. Karuna Karunakaran for their generous efforts when establishing the laboratory at the BCCDC. We would also like to thank Dr. Anat Yanai for useful suggestions for the manuscript development, and Zhuyi Xue for helpful discussions on the design of the model. This work was supported by Genome BC and Genome Canada [281ANV]; and the National Institutes of Health [2R01HG007182-04A1]. The content of this paper is solely the responsibility of the authors, and does not necessarily represent the official views of our funding organizations.",True,False,False acknowledgement,10.1002/essoar.10512446.1,doi10.1002/essoar.10512446.1,"This study was financially supported by the National Natural Science Foundation of China (42172325) and the Fundamental Research Funds for the Central Universities, China University of Geosciences (Wuhan) (CUG2106202).",True,False,False acknowledgement,10.2139/ssrn.4844026,doi10.2139/ssrn.4844026,"This research received funding from the Dutch Research Council (NWO) under grant number ESI.2019.008. It reflects only the author's views, and NWO is not liable for any use that may be made of the information contained therein.",True,False,False acknowledgement,10.48550/arxiv.1911.07325,doi10.48550/arxiv.1911.07325,"*Research supported in part by NATO Collaborative Research Grants Programme 0232/87 and by SERC grant GR/H67263. 1991 Mathematical subject classification: 60H30,53C21",True,False,False acknowledgement,10.1101/531301,doi10.1101/531301,"This work was support by grants from the NIH NHLBI (MAR: 5K23 HL127296, CNC: R01 HL 143070).",True,False,False acknowledgement,10.21203/rs.3.rs-21224/v1,doi10.21203/rs.3.rs-21224/v1,Swiss National Science Foundation (grant nos. 31003A_166427 and 310030_184669) and the Canton of Bern.,True,True,False acknowledgement,10.21203/rs.3.rs-2516603/v1,doi10.21203/rs.3.rs-2516603/v1,"We acknowledge the E-OBS dataset from the EU-FP6 project UERRA (http://www.uerra.eu) and the Copernicus Climate Change Service, and the data providers in the ECA&D project (https://www.ecad.eu). mHM simulations were conducted at the High-Performance Computing (HPC) Cluster EVE86, a joint effort of both the Helmholtz Centre for Environmental Research-UFZ and the German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig. We are grateful to Lily-belle Sweet for her proofreading, which improved the English and quality of the final manuscript.",True,True,False acknowledgement,10.48550/arxiv.2404.01573,doi10.48550/arxiv.2404.01573,"The authors acknowledged helpful discussions and support (AM materials) from the US Army Research Laboratory (Robert Drummond, Brandon McWilliams). In addition, in regards to the HIP treatment, the authors acknowledge funding from the Henry Royce Institute PhD Access Scheme and support from Vahid Nekouie (University of Sheffield). E. Martínez-Pañeda additionally acknowledges financial support from the EPSRC (grants EP/V04902X/1 and EP/R010161/1) and from UKRI's Future Leaders Fellowship programme [grant MR/V024124/1]. G. Álvarez acknowledges the Principality of Asturias for the support received with the Severo Ochoa grant (PA-20-PF-BP19-087), BritishSpanish Society (Plastic Energy Award) and Margarita Salas Postdoctoral contract (Ref.: MU-21-UP2021-030) funded by the University of Oviedo through the Next Generation European Union.",True,False,False acknowledgement,10.26434/chemrxiv-2024-5db77,doi10.26434/chemrxiv-2024-5db77,"This work was supported by the Intramural Research Program of the National Institutes of Health (NIH), NCI-CCR. We acknowledge Biophysics Resource, CCR for use of instrumentation. We thank Dr. Jeff Carrell (CCR-Frederick Flow Cytometry Core Laboratory) for assisting with flow cytometry and Dr. Valentin Magidson for assistance with confocal microscopy (NCI-Optical Microscopy laboratory). We acknowledge Lisa Riffle (Small Animal Imaging Program), and Chelsea Sanders and Dr. Simone Difilippantonio (Laboratory Animal Sciences Program) for assistance with the in vivo study. This project has been funded in part with Federal funds from the National Cancer Institute, National Institutes of Health, under Contract No. HHSN261201500003I.",True,False,False acknowledgement,10.26434/chemrxiv-2021-45rks,doi10.26434/chemrxiv-2021-45rks,"This work was supported in part by financial supports from KOSÉ cosmetology research foundation and the Uehara Memorial Foundation and the JSPS Core-to-Core Program and iGCORE collaboration grant. We acknowledge Life Science Research Center, Gifu University for their kind and continuous support. The authors would like to thank Enago (www.enago.jp) for the English language review.",True,False,True acknowledgement,10.48550/arxiv.2412.12197,doi10.48550/arxiv.2412.12197,This paper is partially supported by XXX. (Corresponding author: Haoran Wang),True,False,False acknowledgement,10.48550/arxiv.1712.05549,doi10.48550/arxiv.1712.05549,"The second listed author was supported by Basic Science Research Program through the National Research Foundation of Korea(NRF) funded by the Ministry of Education, Science and Technology(NRF-2015R1A1A1A05001374)",True,False,False acknowledgement,10.31234/osf.io/xwk5r,doi10.31234/osf.io/xwk5r,"° We thank Naomi Ben-Or, Tom Gabay, and Roni Menahem for their help in the data collection; and Krzysztof Cipora, Ricardo Tarrasch, and Klaus Willmes for the statistical advice. The research was funded by the Jacobs Foundation (2019-1320-05, Dotan) and the Israel Science Foundation (998/21, Dotan).",True,True,False acknowledgement,10.48550/arxiv.2012.15788,doi10.48550/arxiv.2012.15788,"The authors wish to thank: Tal Schuster for his helpful comments and feedback; Nicola De Cao for providing the GENRE predictions for FEVER; Amrith Krishna, Guy Aglionby, Rami Aly and Zhi-jiang Guo for manual evaluation of the model predictions. This research was supported by donation of compute resources from Google Cloud. James Thorne is supported by an Amazon Alexa Graduate Research Fellowship. Andreas Vlachos is supported by the ERC grant AVeriTeC (GA 865958).",True,False,False acknowledgement,10.48550/arxiv.1805.08461,doi10.48550/arxiv.1805.08461,"*This research was partially supported by the National Natural Science Foundation of China (No. 11761056), the Chunhui Project of Ministry of Education (No. Z2017047) and the fundamental research funds for the central universities (No. 2672018ZYGX2018J069)",True,False,False acknowledgement,10.31223/x54s90,doi10.31223/x54s90,"Acknowledgements. The authors thank K. Riechers and M. Ben Yami for their helpful comments. The authors acknowledge funding by the Volkswagen Foundation. This is TiPES contribution #X; The TiPES (“Tipping Points in the Earth System”) project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 820970. N.B. acknowledges further funding by the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 856478, as well as from the Federal Ministry of Education and Research under grant No 01LS2001A.",True,False,False acknowledgement,10.48550/arxiv.math/0507290,doi10.48550/arxiv.math/0507290,"*The author is supported by Fundação para a Ciência e a Tecnologia/(FCT), grant no. SFRH/BD/6783/2001",True,False,False acknowledgement,10.1101/2020.08.24.20181289,doi10.1101/2020.08.24.20181289,"Funding: This work was supported by the U.S. Fogarty International Center (K01TW010268, R25TW009345); National Institute of Neurologic Diseases and Stroke (R01NS086312); National Institute of Allergy and Infectious Diseases (T32AI055433); and the United Kingdom Medical Research Council / Wellcome Trust/ Department for International Development (MRC MR/M007413/1). DBM was also supported by DELTAS Africa Initiative (grant number DEL- 15-011) to THRiVE-2. The DELTAS Africa Initiative is an independent funding scheme of the African Academy of Sciences Alliance for Accelerating Excellence in Science in Africa and supported by the New Partnership for Africa's Development Planning and Coordinating Agency (NEPAD Agency) with funding from the Wellcome Trust (grant number 107742/Z/15/Z) and the UK Government.",True,False,False acknowledgement,10.1101/2020.11.17.386631,doi10.1101/2020.11.17.386631,This work is supported by R21NS104480 from NINDS (to J.H. & W.D). We thank other financial supports from NINDS R01NS082338 (to W.D). We thank Drs. Xiaojiang Li and Shihua Li (at Emory University then) for providing both HTT gRNA and CRISPR/Cas9 constructs.,True,False,False acknowledgement,10.48550/arxiv.1705.11152,doi10.48550/arxiv.1705.11152,G. Wei is partially supported by NSF DMS 1506393.,True,False,False acknowledgement,10.48550/arxiv.0911.5715,doi10.48550/arxiv.0911.5715,This work was partially supported by PAPIIT project IN 100409.,True,False,False acknowledgement,10.26434/chemrxiv-2022-4dxs2,doi10.26434/chemrxiv-2022-4dxs2,Funding for the work at TU Darmstadt was provided by the state of Hessen through Hessenagentur under Grant No.377/13-16 and by the Federal Ministry for Economic Affairs and Energy (BMWi) in the framework of the Greensalpeter project due to an enactment of the German Bundestag under Grant No. 03ET1383A. We gratefully acknowledge stimulating discussions with the partners of the Greensalpeter project. Work at Edmonton was funded by the Natural Sciences and Engineering Research Council of Canada (NSERC).,True,False,False acknowledgement,10.48550/arxiv.2009.01141,doi10.48550/arxiv.2009.01141,We thank A. Haber for valuable comments and discussions. A.S. is supported by the Science \& Technology Facilities Council (STFC) in the form of an Ernest Rutherford Fellowship.,True,False,False acknowledgement,10.21203/rs.3.rs-3316337/v1,doi10.21203/rs.3.rs-3316337/v1,"The authors have to thank the Nîmes University Hospital for its structural, human, and financial support through the award obtained by our team during the internal call for tenders ""Thématiques phares"". We thank Sarah Kabani for her editorial assistance, Chloé Louche and Violaine Lynaert for data collection, Camile Briant for data management. | This work was supported by the French Society of Pressure Ulcer and the University Hospital of Nîmes.",True,True,False acknowledgement,10.1101/2022.09.15.500719,doi10.1101/2022.09.15.500719,"This study was funded by grants from the National Health and Medical Research Council APP1194139/APP1126276, National Stem Cell Foundation of Australia, New South Wales Government Office of Health and Medical Research, Merchant Charitable Foundation and the JEM Research Foundation. | DS was supported by funding from the Royal Australasian College of Physicians, The Institute for Clinical Pathology and Medical Research, and the Australian Government Research Training Program. NJP was supported by the National Heart Foundation of Australia (101889). | We acknowledge the support of the following Core Facilities: Victor Chang Cardiac Research Institute Innovation Centre, funded by the NSW Government; Flow Cytometry Core Facility supported by the Westmead Institute for Medical Research, Westmead Research Hub, Cancer Institute New South Wales and National Health and Medical Research Council.",True,False,False acknowledgement,10.48550/arxiv.1204.0661,doi10.48550/arxiv.1204.0661,The work was supported by the Swedish Research Council (VR).,True,False,False acknowledgement,10.1101/673889,doi10.1101/673889,"This work was supported by research funds awarded to F.B.B. from the Canadian Institutes of Health Research (MOP114921) and from the Edmonton Civic Employees Charitable trust fund. J.C.C was the recipient of Canada Graduate Scholarship awarded by the Natural Sciences and Engineering Research Council of Canada. F.B,B. holds the Shriners Hospital for Children Endowed Chair in Pediatric Scoliosis Research.",True,False,False acknowledgement,10.1101/2023.07.31.551308,doi10.1101/2023.07.31.551308,"R.E.A.G., S.C. and C-S.L. contributed equally to this work. D.D.J would like to thank the EPSRC (EP/J015318/1 and EP/V048147/1) for supporting this work. We gratefully acknowledge financial support from the U.S. Air Force Office of Scientific Research under award FA8655-21-1-7003. R.E.A.G. was supported by the Biotechnology and Biological Sciences Research Council-funded South West Biosciences Doctoral Training Partnership [training grant reference BB/M009122/1]. S.C. acknowledges support from the Program for College Research of the Fonds de recherche du Québec – Nature et technologie (FRQ-NT #275304 and #321076). K.R. was supported by Wellcome Trust Institutional Strategic Support Fund (grant reference AC1910IF14) awarded to D.D.J. The authors would like to thank the Cardiff School of Biosciences Protein Technology Hub for helping with the production and analysis of proteins. The BLIP2, TEM-1 and KPC-2 containing",True,False,False acknowledgement,10.1101/2022.09.15.507240,doi10.1101/2022.09.15.507240,"Funding: This work was supported by the priority program SPP2225 (FU 1027/4-1 to M.F.), the DFG (SU 239/18-1 to R.S.) and the Collaborative Research Centers CRC1449, Project ID 431232613; project B5 (to M.F. and F.G.). J.K. is financed by a scholarship from the H. Wilhelm Schaumann foundation. M.F. received support by the Freie Universität Berlin within the Excellence Initiative of the German Research Foundation. JGH is funded by a National Science Centre (NCN, Poland) grant no. 2020/39/B/NZI/02898 (OPUS 20).",True,False,False acknowledgement,10.48550/arxiv.1704.02797,doi10.48550/arxiv.1704.02797,"The authors would like to thank the financial sup- port provided by the Coordenac ̧ao de Aperfeic ̧oamento ̃ de Pessoal de N ́ıvel Superior (CAPES), Fundac ̧ao de Amparo a Pesquisa do Distrito Federal (FAPDF), and ` the Conselho Nacional de Desenvolvimento Cient ́ıfico e Tecnologico (CNPq). ́",True,False,False acknowledgement,10.48550/arxiv.2004.13814,doi10.48550/arxiv.2004.13814,"Acknowledgements : The second author is thankful to MHRD, Government of India for financial support.",True,False,False acknowledgement,10.21203/rs.3.rs-58754/v1,doi10.21203/rs.3.rs-58754/v1,"The project was supported by grants from the State's Key Project of Research and Development Plan (2017YFC0108300), the National Natural Science Foundation of China (81672446), the Southern Medical University Clinical Research Start-Up Project (LC2016ZD003), and the Key Clinical Specialty Discipline Construction Program ([2012]121).",True,False,False acknowledgement,10.48550/arxiv.2107.06997,doi10.48550/arxiv.2107.06997,"This work was partially supported by the H2020 project PRECRIME, funded under the ERC Advanced Grant 2017 Program (ERC Grant Agreement n. 787703). The driving simulator has been provided by BeamNG GmbH.",True,False,False acknowledgement,10.48550/arxiv.2006.00340,doi10.48550/arxiv.2006.00340,"1.3. Acknowledgements. We are grateful to Uri Erez, Swastik Kopparty, and Alex Samorodnitsky for useful discussions. The authors gratefully acknowledge the support of grants ISF 2919/19, ISF 1791/17, BSF 2016256, the Simons Collaboration on Algorithms and Geometry, a Simons Investigator Award, and by the National Science Foundation (NSF) under Grant No. CCF-1814524.",True,False,False acknowledgement,10.48550/arxiv.2210.14552,doi10.48550/arxiv.2210.14552,"We would like to thank our anonymous reviewers for their feedback. This work is in part supported by the UKRI Centre for Doctoral Training in Natural Language Processing, funded by the UKRI (grant EP/S022481/1) and the University of Edinburgh, School of Informatics.",True,False,False acknowledgement,10.48550/arxiv.1001.4912,doi10.48550/arxiv.1001.4912,"Acknowledgement. The authors started this research at the Centro di Ricerca Matematica September environment. The 2008. second Ennio We thank author De Giorgi the visited Centro during the the for first providing workshop author in on a September stimulating Groups in 2009 Geometry research at the in Osaka University second author and was thanks supported the Department by a DFG grant of Mathematics within the for Forschergruppe FOR The 790 Classification of Algebraic Surfaces and Compact Complex Manifolds. Finally, we thank the referee, Alessandra Sarti and Samuel Boissire for comments.",True,False,False acknowledgement,10.22541/au.165756254.44254261/v1,doi10.22541/au.165756254.44254261/v1,"This work was supported by the open grant from CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences. We thank Dong Jinlong, Deng Yun, Bao Wenhua for help of the field investigation.",True,False,False acknowledgement,10.48550/arxiv.2501.05680,doi10.48550/arxiv.2501.05680,"This work was supported in part by the Ministry of Science and ICT (MSIT), South Korea, under the Institute of Information & Communications Technology Planning & Evaluation (IITP) grants (No. 2022-0-01037, Development of High Performance Processing-In-Memory Technology based on DRAM) and (No. IITP-2025-RS-2023-00256472, the Graduate School of Artificial Intelligence Semiconductor), and by Samsung Electronics.",True,False,False acknowledgement,10.48550/arxiv.2409.02213,doi10.48550/arxiv.2409.02213,"The second author was supported by grants from FONCyT (PICT-2019-01054), SGICYT-UNS (24/L117 y 24/L126), and CONICET (PIP 11220210100343CO).",True,False,False acknowledgement,10.21203/rs.3.rs-35654/v1,doi10.21203/rs.3.rs-35654/v1,This study was supported by the National Natural Science Foundation of China (No. 81760548).,True,False,False acknowledgement,10.48550/arxiv.2107.13353,doi10.48550/arxiv.2107.13353,This work was supported in part by the Fundamental Research Funds for the Central Universities under Grant No. 30919011282.,True,False,False acknowledgement,10.1101/2023.01.13.523885,doi10.1101/2023.01.13.523885,This work was supported by a grant from the Agence Nationale de la Recherche (ANR-19-CE15-0023) to N.B. and S.B. and the PIA PARAFRAP Consortium (ANR-11-LABX0024) to N.B.,True,False,False acknowledgement,10.48550/arxiv.math/9610209,doi10.48550/arxiv.math/9610209,Research partially supported by NSF Grant DMS-9500874 and TARP Grant ARP-275.,True,False,False acknowledgement,10.1101/423665,doi10.1101/423665,"This work was supported by The Rose Hills Foundation, The USC Provost's Office, the USC Translational Imaging Center, and the Viterbi School of Engineering.",True,False,False acknowledgement,10.48550/arxiv.2301.10080,doi10.48550/arxiv.2301.10080,This publication has emanated from research conducted with the financial support of Science Foundation Ireland under Grant number 19/FFP/7005(T).,True,False,False acknowledgement,10.21203/rs.3.rs-2830296/v1,doi10.21203/rs.3.rs-2830296/v1,This study was supported by the National Natural Science Foundation of China (42207275). | This study was supported by the National Natural Science Foundation of China (42207275).,True,False,False acknowledgement,10.1101/2022.04.10.487349,doi10.1101/2022.04.10.487349,"We thank members of the Harvey lab and Giuseppe Pica for helpful discussions and Leah Thomas, David Allen, Vishal Sharoff, Theodore Lutkus, Joseph Deluisi, and Alec Nelson for assistance with behavioral training of mice and experiments. This work was supported by grants from the NIH (R01 MH107620, R01 NS089521, R01 NS108410, DP1 MH125776). SK was supported by an Alice and Joseph Brooks Fund Fellowship, a Leonard and Isabelle Goldenson Postdoctoral Fellowship, an Uehara Foundation Research Fellowship, a JSPS Overseas Research Fellowship, and a NARSAD Young Investigator Grant. SP received support from the Fondation Bertarelli.",True,False,False acknowledgement,10.21203/rs.3.rs-4474095/v1,doi10.21203/rs.3.rs-4474095/v1,"The authors acknowledge the Czech Ministry of Education, Youth and Sports for financial support (grant No. LTACH19023). This work was supported by the Charles University grant SVV-2024-260720 and European Union and the state budget of the Czech republic under the project (project SenDiSo: CZ.02.01.01/00/2200 project MATFUN: CZ.02.1.01/0.0/0.0/15003/0000487, project FERRMION: CZ.02.01.01/00/22008/0004591).",True,False,False acknowledgement,10.48550/arxiv.2410.16745,doi10.48550/arxiv.2410.16745,I gratefully acknowledge financial support from the Swiss National Science Foundation (SNSF) through Project 100018_192583.,True,False,False acknowledgement,10.48550/arxiv.2312.02222,doi10.48550/arxiv.2312.02222,"This paper is supported by National Key R&D Program of China (2022YFF0902200), the NSFC project No.62125107.",True,False,False acknowledgement,10.48550/arxiv.1205.0767,doi10.48550/arxiv.1205.0767,This work was supported by the NSF and AFOSR.,True,False,False acknowledgement,10.1101/2023.04.15.537024,doi10.1101/2023.04.15.537024,"This work was supported by the National Institutes of Health grant AI173270 to T.W. and Project-Conacyt-CB-285816 to R.A.B-G. N. G-C. acknowledge the support by the Slovenian Research Agency to Infrastructural Centre Mycosmo (MRIC UL, I0-0022) and program P4- 0432. The high-field NMR spectra were collected at the Environmental Molecular Sciences Laboratory (grid.436923.9), a DOE Office of Science scientific user facility sponsored by the Department of Energy's Office of Biological and Environmental Research and located at PNNL under contract DE-AC05-76RL01830.",True,False,False acknowledgement,10.48550/arxiv.1703.09458,doi10.48550/arxiv.1703.09458,"1.2. Acknowledgments. The authors would like to thank Vestislav Apostolov, Hugues Auvray, Yoshinori Hashimoto and Julien Keller for stimulating discussions and useful remarks. YS is supported by MEXT, Grant-in-Aid for Young Scientists (B), No. 25800050. CT is partially supported by ANR project EMARKS No ANR-14-CE25-0010.",True,False,False acknowledgement,10.48550/arxiv.1907.10384,doi10.48550/arxiv.1907.10384,This research was partially funded by the Netherlands Organization for Scientific Research (NWO) under project number 639.022.606.,True,False,False acknowledgement,10.48550/arxiv.2311.07684,doi10.48550/arxiv.2311.07684,"RM would like to thank the Ministry of Human Resource Development, Government of India (GoI), for financial assistance. MRH wishes to acknowledge support from the Science and Engineering Research Board (SERB), Government of India (GoI), for the SERB National Post-Doctoral fellowship, File Number: PDF/2022/002988. DM wishes to acknowledge support from the Science and Engineering Research Board (SERB), Department of Science and Technology (DST), Government of India (GoI), through the Core Research Grant CRG/2020/003664. RM would like to thank Niloy Mondal for the helpful discussions. DM and RM also thank the Gravity and High Energy Physics groups at IIT Guwahati for illuminating discussions.",True,False,False acknowledgement,10.21203/rs.3.rs-77409/v1,doi10.21203/rs.3.rs-77409/v1,"This work was financially supported by the Key Agricultural Project of Guizhou Province (QHZC-[2016]2580 and QHZC-[2019]2382), the National Natural Science Foundation of China (31870002 and 31660010), the Guizhou University Introduced Talent Project (GZU RGHZ (2019)33) and the Qiankehe talents project ([2018]5781 and [2017]5788-11).",True,False,False acknowledgement,10.1101/2021.02.12.430633,doi10.1101/2021.02.12.430633,"Funding: Supported by NIH U54 grants RR019478 (NCRR) and HD061222 (NICHD), IDDRC grants HD38985 (NICHD) and HD08321 (NICHD) and grant LM012870 (NLM). The Angelman, Rett and Prader-Willi Consortium (U54 RR019478 (NCRR) and HD061222 (NICHD)) is a part of the National Institutes of Health (NIH) Rare Disease Clinical Research Network (RDCRN), supported through collaboration between the NIH Office of Rare Diseases Research (ORDR) at the National Center for Advancing Translational Science (NCATS), and the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD). The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.",True,False,False acknowledgement,10.1101/401349,doi10.1101/401349,"Funding: We gratefully acknowledge financial support by Deutsche Forschungsgemeinschaft (DFG), grant number RE3474/2-1 and RE3474/2-2 to BYR. ES also | gratefully acknowledges financial support by IMPRS for Scientific Computing and Computational Biology.",True,False,False acknowledgement,10.48550/arxiv.2307.12820,doi10.48550/arxiv.2307.12820,"We are grateful to Jianglai Liu, Yong Yang, and Ning Zhou for their helpful discussions on the PandaX data analysis. This work is supported in part by the National Key R&D Program of China No. 2017YFA0402204, the National Natural Science Foundation of China (NSFC) No. 11825506, No. 11821505, No. 12047503, and No. 12247148.",True,True,False acknowledgement,10.1101/2022.08.23.505031,doi10.1101/2022.08.23.505031,"The research was supported by Emergency COVID-19 Seed Grant # R00RG2620 from the Tobacco-Related Disease Research Program (TRDRP) and grant R01ES029741 from the National Institute of Environmental Health Sciences and the Center for Tobacco Products. The content is solely the responsibility of the authors and does not necessarily represent the official view of the TRDRP, NIH, or the Food and Drug Administration.",True,False,False acknowledgement,10.1101/2023.08.06.552200,doi10.1101/2023.08.06.552200,"The National Institute of Allergy and Infectious Diseases grant R01 AI122232 (to A.S.), and Burroughs Wellcome Fund for Investigators in Pathogenesis Award (to A.S.) provided funding for this work.",True,False,False acknowledgement,10.21203/rs.3.rs-65317/v1,doi10.21203/rs.3.rs-65317/v1,Funding: This study was supported by China's National Development and Reform Commission Grant (No. 2018GFGW001) to Wei Zhang.,True,False,False acknowledgement,10.1101/2022.06.01.494277,doi10.1101/2022.06.01.494277,"This work was supported by NIH grants U54HL127624 (BD2K LINCS Data Coordination and Integration Center, DCIC), U24TR002278 (Illuminating the Druggable Genome Resource Dissemination and Outreach Center, IDG-RDOC), U01LM012630 (BD2K, Enhancing the efficiency and effectiveness of digital curation for biomedical 'big data'). The authors would like to acknowledge Ron Lampert and Sarah Simon for their editing of review of manuscript and creation of figures and tables.",True,True,False acknowledgement,10.48550/arxiv.2202.04092,doi10.48550/arxiv.2202.04092,"members of the Chicago Human+AI lab for their thoughtful feedback. This paper is supported by in part by a CDAC discovery grant at the University of Chicago and an NSF grant, IIS-2040989.",True,False,False acknowledgement,10.48550/arxiv.cond-mat/0702053,doi10.48550/arxiv.cond-mat/0702053,"This work was partially supported by CNPq (ESN support and research grant), FAPEMIG, FAPESP and FAPERJ. ICCL is grateful for the hospitality of Prof. M. W. Wu group at the USTC, Hefei, Anhui, China.",True,False,False acknowledgement,10.21203/rs.3.rs-2676238/v1,doi10.21203/rs.3.rs-2676238/v1,This study was supported by Research University grants 1001/CIPPT/8012265 and 1001/CIPPT/813064 from Universiti Sains Malaysia to EJM and NMY and the Fundamental Research Grant Scheme from the Ministry of Higher Education of Malaysia FRGS/1/2018/SKK08/USM/02/8 to EJM.,True,False,False acknowledgement,10.48550/arxiv.1302.3805,doi10.48550/arxiv.1302.3805,The second author is grateful to the Chinese Scholarship Council (CSC) for providing partial financial support. Both authors thank G. Studzinski for valuable discussions about non-commutative Gröbner bases. And both authors appreciate anonymous referees for careful reading and useful suggestions.,True,False,False acknowledgement,10.1101/409482,doi10.1101/409482,This work is supported by Center for Theoretical Biological Physics NSF Grant PHY-1427654. A.B.K. also acknowledges the support from Welch Foundation (Grant C-1559) and from the NSF (Grant CHE-1664218).,True,False,False acknowledgement,10.48550/arxiv.0809.2167,doi10.48550/arxiv.0809.2167,*This work is supported by NSERC in Canada.,True,False,False acknowledgement,10.48550/arxiv.1703.01103,doi10.48550/arxiv.1703.01103,This was supported by Korea National University of Transportation in 2017 and by the grants from the National Research Foundation funded by the Korean government No. NRF-2017R1A2B4010738 (I. C.).,True,False,False acknowledgement,10.21203/rs.3.rs-63503/v1,doi10.21203/rs.3.rs-63503/v1,The current study was derived from a dissertation for Master’s degree in Public Health Nutrition which was funded by Shahid Sadoughi University of Medical Sciences for planning and conducting the analyses.,True,False,False acknowledgement,10.1101/2023.11.20.566232,doi10.1101/2023.11.20.566232,"The experimental work was supported by grants from the Departament d'Innovació Universitat i Empresa (DIUiE), the Spanish Ministry of Economy and Competitiveness (SAF2016-75006-P and PID2019-105173RB-I00) and Consejo Superior de Investigaciones Científicas (Ref# 201820I131), 'Centro de Excelencia Severo Ochoa 2013-2017', SEV-2012-2018 and ERC Synergy Grant ""4DGenome"" nr: 609989. MAM-R acknowledges support by the Spanish Ministerio de Ciencia e Innovación (PID2020- 115696RB-I00).",True,False,False acknowledgement,10.1101/2020.05.28.121459,doi10.1101/2020.05.28.121459,"Funding: This work was supported by NIH grants DC017178 (DBP) DC015388 (TAH), DC018327 (RSW), NSF fellowship DGE1745303 (KKC) and NIH fellowship DC015376 (RSW).",True,False,False acknowledgement,10.48550/arxiv.2212.14283,doi10.48550/arxiv.2212.14283,"This research uses data or software obtained from the Gravitational Wave Open Science Center (gwosc.org), a service of LIGO Laboratory, the LIGO Scientific Collaboration, the Virgo Collaboration, and KAGRA. The research was supported by the Peng Cheng Laboratory and Peng Cheng Cloud-Brain. This work was supported in part by the National Key Research and Development Program of China (Grant No. 2021YFC2203001 and No. 2020YFC2201501) and in part by the NSFC (No. 11920101003, No. 12021003, No. 12075297 and No. 12235019). Z. Cao was supported by CAS Project for Young Scientists in Basic Research YSBR-006.",True,True,True acknowledgement,10.48550/arxiv.1803.06817,doi10.48550/arxiv.1803.06817,"Acknowledgements. The authors would like to thank Dietmar Bisch, Mike Hartglass, David Penneys and Jyotishman Bhowmick for several useful discussions. A part of this work was completed during the trimester program on von Neumann algebras (during May-Aug, 2016) at Hausdorff Research Institute for Mathematics (HIM) and the authors would like to thank HIM for the opportunity. Corey Jones was supported by Discovery Projects Subfactors and symmetries DP140100732 and Low dimensional categories DP160103479 from the Australian Research Council.",True,False,False acknowledgement,10.21203/rs.3.rs-416701/v1,doi10.21203/rs.3.rs-416701/v1,"This work was supported by a grant (No. 2021R1F1A1070549) from the National Research Foundation (NRF) of Korea, funded by the Korean government (Ministry of Science, ICT & Future Planning).",True,False,False acknowledgement,10.1101/2023.03.09.23287046,doi10.1101/2023.03.09.23287046,Funding This study was funded by Grant NIH/NIA RF1AG069121 and Grant NIH/NIA 1R01AG073474-01A1.,True,False,False acknowledgement,10.48550/arxiv.2407.04411,doi10.48550/arxiv.2407.04411,"This research/project is supported by the National Research Foundation, Singapore under its AI Singapore Programme (AISG Award No: AISG2-PhD/2023-01- 039J). This research is part of the programme DesCartes and is supported by the National Research Foundation, Prime Minister's Office, Singapore under its Campus for Research Excellence and Technological Enterprise (CREATE) programme. This research is supported by the National Research Foundation Singapore and the Singapore Ministry of Digital Development and Innovation, National AI Group under the AI Visiting Professorship Programme (award number AIVP-2024-001). Xinyuan Niu is supported by the Centre for Frontier AI Research of Agency for Science, Technology and Research (A*STAR). Jiangwei Chen is supported by the Institute for Infocomm Research of Agency for Science, Technology and Research (A*STAR). We acknowledge",True,True,False acknowledgement,10.26434/chemrxiv-2024-ljrdf,doi10.26434/chemrxiv-2024-ljrdf,We thank Prof. Hitoshi Kasai for the DLS measurements. We also thank Biomedical Research Unit of Tohoku University Hospital for technical support concerning nanoparticle tracking analysis. This work was supported by JSPS Research Fellowship for Young Scientists (23KJ0192 to M.O.) and JST CREST (JPMJCR19H2 to T.O.).,True,False,False acknowledgement,10.21203/rs.3.rs-1881958/v1,doi10.21203/rs.3.rs-1881958/v1,"The study was funded by Beijing Municipal Administration of Hospitals ""Mission plan"" (SML20180601) and National Key Research and Development Program of China (2017YFC0908800).",True,False,False acknowledgement,10.48550/arxiv.2402.13081,doi10.48550/arxiv.2402.13081,The authors are grateful to Kim Hammar and Forough Shahab for fruitful discussions around this work and for their comments on an earlier version of this paper. This research has been supported by Digital Futures.,True,False,False acknowledgement,10.21203/rs.2.17631/v2,doi10.21203/rs.2.17631/v2,This work was supported by the National Natural Science Foundation of China [Grant No. 31971142]; Science & Technology Development Plan of Jilin Province [20190201185JC]; and the Fundamental Research Funds for the Central Universities [Grant No. 2019JCXK-55].,True,False,False acknowledgement,10.21203/rs.3.rs-1274022/v1,doi10.21203/rs.3.rs-1274022/v1,"Ali Seifitokaldani acknowledges NSERC for its Discovery Grant (RGPIN-2020-04960), Canada Research Chair (950-23288) and FRQNT New Researchers Fund (2021-NC-283234) to support this study. Computations in this research were enabled in part by support provided by Calcul Quebec and Compute Canada.",True,False,False acknowledgement,10.1101/2022.05.05.490856,doi10.1101/2022.05.05.490856,"We thank members of the Hadjifrangiskou and Schmitz labs for helpful discussions and critical reading of the manuscript. This work was supported by the National Institutes of Health under the following grants: P20DK123967 (MH), T32 GM007569 (JRB) and 2T32AI112541-06 (MAW). This work was supported in part using the resources of the Center for Innovative Technology at Vanderbilt University.",True,False,False acknowledgement,10.21203/rs.3.rs-4366064/v1,doi10.21203/rs.3.rs-4366064/v1,This research was funding by NIH Grant T32MH116140.,True,False,False acknowledgement,10.48550/arxiv.2504.20037,doi10.48550/arxiv.2504.20037,"Acknowledgements. The authors thank Prof. R. Ignace for the useful discussion.We gratefully acknowledge support from the Grant Agency of the Czech Republic (GAČR 25-15910S). The Astronomical Institute of the Czech Academy of Sciences in Ondřejov is supported by the project RVO:67985815.Computational resources were provided by the e-INFRA CZ project (ID:90254), supported by the Ministry of Education, Youth and Sports of the Czech Republic.",True,False,False acknowledgement,10.1101/493312,doi10.1101/493312,"JHC acknowledge the Danish National Research Foundation for funding for the Center for Macroecology, Evolution and Climate, grant no. DNRF96.",True,False,False acknowledgement,10.21203/rs.3.rs-50742/v1,doi10.21203/rs.3.rs-50742/v1,"Research reported in this publication was supported by the National Heart, Lung, and Blood Institute of the National Institutes of Health under award number NIH K01HL120886 to Ledee and NIH R01HL122546 to Olson.",True,False,False acknowledgement,10.48550/arxiv.2110.12741,doi10.48550/arxiv.2110.12741,"This work was supported by the Chinese National Natural Science Foundation Projects #61961160704, #61876179, the External cooperation key project of Chinese Academy Sciences # 173211KYSB20200002, the Key Project of the General Logistics Department Grant No.AWS17J001, Science and Technology Development Fund of Macau (No.0010/2019/AFJ, 0008/2019/A1, 0025/2019/A-KP, 0019/2018/ASC).",True,False,False acknowledgement,10.48550/arxiv.2112.14463,doi10.48550/arxiv.2112.14463,"FUNDING. The author has been supported by the Advanced ERC grant ALKAGE, no 670846 from September 2015, attributed by the European Research Council.",True,False,False acknowledgement,10.48550/arxiv.2404.12818,doi10.48550/arxiv.2404.12818,"This work was supported in part by Innovation Fund Denmark under grant number 0153-00205B. G. A. Lunde, E. V. Damm, P. A. V Gade, and J. Kazempour are with the Department of Wind and Energy Systems, Technical University of Denmark, Kgs. Lyngby 2800, Denmark (e-mails: Lunde.gustav@gmail.com, ev.damm@yahoo.com, {pega, jalal}@dtu.dk). P. A. V Gade is also with IBM Client Innovation Center, Copenhagen, Denmark. The first two co-authors contributed equally.",True,False,False acknowledgement,10.21203/rs.3.rs-4492344/v1,doi10.21203/rs.3.rs-4492344/v1,This work was supported by the National Natural Science Foundation of China (Grant No.12032006) and the Foundation for Innovative Research Groups of the National Natural Science Foundation of China (Grant No. 12221002).,True,False,False acknowledgement,10.48550/arxiv.1911.06939,doi10.48550/arxiv.1911.06939,"Acknowledgement. This work was funded by the European Unions Horizon 2020 research and innovation programme -grant agreement no. 688147 (MuMMER, mummer-project.eu).",True,False,False acknowledgement,10.48550/arxiv.1212.6234,doi10.48550/arxiv.1212.6234,This work was supported by NICHD grant R01 HD-67509.,True,False,False acknowledgement,10.1101/743500,doi10.1101/743500,"This research was supported by the National Cancer Institute of the National Institutes of Health under Award Number R01 CA194518, R01 CA211762, and R01 CA235152. ZRL is M. Frank Rudy and Margaret Domiter Rudy Professor of Biomedical Engineering.",True,False,False acknowledgement,10.1101/595496,doi10.1101/595496,"This study was partly supported by the Core Research for Evolutional Science and Technology (CREST) Program ""Nano inertia detection device and system"" of the Japan Science and Technology Agency (JST), a MEXT/JSPS grant (16K12950), and a COI-JST grant to the ""Research Center for the Earth Inclusive Sensing Empathizing with Silent Voices.""",True,False,False acknowledgement,10.21203/rs.3.rs-3237460/v1,doi10.21203/rs.3.rs-3237460/v1,"This study was supported by China Postdoctoral Science Foundation (2022M711909), Shandong Provincial Natural Science Foundation (ZR2022MH068), Shandong Provincial Traditional Chinese Medicine Technology Project (Q-2022066) and Shandong Provincial Postdoctoral Science Foundation (SDCX-ZG-202203066).",True,False,False acknowledgement,10.48550/arxiv.2005.04698,doi10.48550/arxiv.2005.04698,"The author would like to thank Igor Wigman for pointing out the question considered here and for the many discussions, Zeev Rudnick for valuable comments that helped improving the presentation of the article, as well as Oleksiy Klurman for useful conversations. The author would also like to thank the anonymous referees for pointing our an error in the previous draft of the article and their valuable comments that greatly helped to improve the presentation. This work was supported by the Engineering and Physical Sciences Research Council [EP/L015234/1]. The EPSRC Centre for Doctoral Training in Geometry and Number Theory (The London School of Geometry and Number Theory), University College London.",True,False,False acknowledgement,10.21203/rs.3.rs-2561877/v1,doi10.21203/rs.3.rs-2561877/v1,"RO, TL, GK, and ML acknowledge the support from U.S. Department of Energy (DOE), Advanced Research Projects Agency-Energy (ARPA-E) DE-AR0001298. RO and ML are partly supported by DOE Basic Energy Sciences (BES), Award No. DE-SC0021940. ML acknowledges the Norman C Rasmussen Career Development Chair, the MIT Class of 1947 Career Development Chair, and the support from Dr. R. Wachnik.",True,False,False acknowledgement,10.48550/arxiv.1810.05659,doi10.48550/arxiv.1810.05659,"*This work has been partially funded by the Climate and Energy Funds (KliEn) within the strategic research program ""Leuchttürme der Elektromobilität"" under grant number 853767 (SEAMLESS).",True,False,False acknowledgement,10.21203/rs.3.rs-134911/v1,doi10.21203/rs.3.rs-134911/v1,"This study was supported by Sanming Project of Medicine in Shenzhen (SZSM202011012), Shenzhen Fund for Guangdong Provincial High-level Clinical Key specialties (No.SZXK035) and Shenzhen Innovation Science and Technology Committee (JCYJ20180228175358223).",True,False,False acknowledgement,10.1101/2022.12.23.22283885,doi10.1101/2022.12.23.22283885,- C.E.A.C. has received funding from the Dutch National MS Foundation. - S.A.H. has received funding from Merck for MS-related research. - M.M.V. has received funding from Merck for MS-related research.,True,False,False acknowledgement,10.48550/arxiv.1208.4802,doi10.48550/arxiv.1208.4802,Acknowledgements. I would like to thank Ralf Spatzier for many helpful conversations. I also thank the National Science Foundation for support through the grant DMS-0602191.,True,False,False acknowledgement,10.1101/533174,doi10.1101/533174,"This work was supported by a grant from the National Institutes of Health (R15DK109484, to L.V.Y).",True,False,False acknowledgement,10.21203/rs.3.rs-31530/v2,doi10.21203/rs.3.rs-31530/v2,This work was supported by National Natural Sciences Foundation of China (No. 31970445 & 81371848).,True,False,False acknowledgement,10.26434/chemrxiv-2022-cmzdf,doi10.26434/chemrxiv-2022-cmzdf,"Research reported in this publication was supported by the National Institute of General Medical Sciences of the National Institutes of Health (NIGMS) under Award Number R01GM136920, the Excellence Initiative of Université de Pau et des Pays de l'Adour I-Site E2S UPPA, and by Boston College start-up funds. We also acknowledge the NIH-S10 (award: 1S10OD026910-01A1) and the NSF-MRI (award: CHE-2117246) for the support of Boston College's NMR facilities. The ""Direction du Numérique"" of the Université de Pau et des Pays de l'Adour (UPPA), CINES under allocation A011080045 made by Grand Equipement National de Calcul Intensif (GENCI) and Mésocentre de Calcul Intensif Aquitain (MCIA) are acknowledged for the support of computational facilities.",True,False,False acknowledgement,10.1101/2023.05.04.539419,doi10.1101/2023.05.04.539419,Work is supported by DeArce-Koch memorial grant and Interdisciplinary Research Initiation Award to RS.,True,False,False acknowledgement,10.48550/arxiv.1508.07427,doi10.48550/arxiv.1508.07427,*The first author was partially supported by CNPq-Brasil. The second author was partially supported by FAPESP.,True,False,False acknowledgement,10.21203/rs.3.rs-3892947/v1,doi10.21203/rs.3.rs-3892947/v1,Funding: This work was supported by Natural Science Foundation of Sichuan Province (No.2023NSFSC2086).Grant numbers Tie Yongbo and XU Wei.,True,False,False acknowledgement,10.48550/arxiv.1310.4874,doi10.48550/arxiv.1310.4874,"This work is funded by EPSRC, Science and Innovation Award (EP/D063 191/1). The authors wish to thank the support.",True,False,False acknowledgement,10.48550/arxiv.2303.05029,doi10.48550/arxiv.2303.05029,"We would like to thank the anonymous reviewers for their helpful feedback. We also gratefully acknowledge the authors of Aurora and VulnLoc, who made their implementations and experiment configurations publically available. This work was supported by the Acquisition, Technology & Logistics Agency (ATLA) under the Innovative Science and Technology Initiative for Security 2020 (JPJ004596).",True,False,False acknowledgement,10.2139/ssrn.4889982,doi10.2139/ssrn.4889982,"The authors gratefully thanked the Korea Institute of Science and Technology for providing scientific research instruments. In addition, this study was supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (2020R1C1C1005063) and KIST Institutional Program (Project No. 2Z07041). | This study was supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (2020R1C1C1005063) and KIST Institutional Program (Project No. 2Z07041).",True,False,False acknowledgement,10.48550/arxiv.math/0208114,doi10.48550/arxiv.math/0208114,Acknowledgements: The research for this paper was partly supported by the PRODYN program of the European Science Foundation. S. Luzzatto also acknowledges the financial support of EPSRC grant No. GR/K86329.,True,False,False acknowledgement,10.48550/arxiv.2302.12811,doi10.48550/arxiv.2302.12811,Funding The work in this paper is supported by the Dutch Research Council (NWO) through Gravitation-grant NETWORKS-024.002.003.,True,False,False acknowledgement,10.48550/arxiv.1202.5931,doi10.48550/arxiv.1202.5931,"This work was supported by MICINN Projects No. FIS2006-03525, FIS2010-21924-C02-01 and BFU201021847-C02-02; Generalitat de Catalunya grant No. 2009SGR1055; and the Ramón y Cajal program of the Spanish Ministry of Science.",True,False,False acknowledgement,10.26434/chemrxiv-2024-7km9r,doi10.26434/chemrxiv-2024-7km9r,"The authors acknowledge the United States Department of Energy through the Office of Science, Office of Basic Energy Sciences (BES), Chemical, Biological, and Geosciences Division, Data Science Initiative, grant DE-SC0020381. Use of the Center for Nanoscale Materials, U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences User Facility under Contract No. DE-AC02-06CH11357, and of the computational resources from the Nation Energy Research Scientific Computing Center, is also acknowledged.",True,True,False acknowledgement,10.48550/arxiv.2403.17352,doi10.48550/arxiv.2403.17352,"SB and JCP acknowledge support from NASA grant 80NSSC21K1768. BC acknowledges the support of NASA grants 80NSSC21K1768, NNN06AA01C, and 80NSSC24K0171. VKJ acknowledges support from the Parker Solar Probe mission as part of NASA's Living with a Star (LWS) program under contract NNN06AA01C. Parker Solar Probe was designed, built, and is now operated by the Johns Hopkins Applied Physics Laboratory as part of NASA's Living with a Star (LWS) program (contract NNN06AA01C). Support from the LWS management and technical team has played a critical role in the success of the Parker Solar Probe mission.",True,True,True acknowledgement,10.21203/rs.3.rs-458198/v1,doi10.21203/rs.3.rs-458198/v1,"This work is partially supported by the National Nature Science Foundation of China No. 12011530062, No. 11672270 and No. 11872335. E. Shchepakina and V. Sobolev were funded by RFBR and NSFC according to the research project No. 20-51-53008.",True,False,False acknowledgement,10.26434/chemrxiv-2023-mlqb2,doi10.26434/chemrxiv-2023-mlqb2,This work was supported by the Czech Academy of Sciences (project RVO: 61388963) and the Czech Science Foundation (project 23-04659S).,True,False,False acknowledgement,10.1101/2021.10.18.464893,doi10.1101/2021.10.18.464893,"616 This research was partially funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – 427879779; 403980864.",True,False,False acknowledgement,10.21203/rs.3.rs-4181641/v1,doi10.21203/rs.3.rs-4181641/v1,This study was supported by the Wuxi Municipal Health Commission Youth Scientific Research Project (Q202049). The supporting source had no restrictions regarding publication.,True,False,False acknowledgement,10.1101/2020.05.14.096677,doi10.1101/2020.05.14.096677,"This study was funded in part by grants R00-AG036848, R00-AG-036818, R01-AG-056535 from the National Institute on Aging. We thank Samantha Owens for assistance with white matter hyperintensity measurements and visual inspection. We report how we determined our sample size, all data exclusions, all inclusion/exclusion criteria, whether inclusion/exclusion criteria were established prior to data analysis, all manipulations, and all measures in the study.",True,True,False acknowledgement,10.21203/rs.3.rs-3707515/v1,doi10.21203/rs.3.rs-3707515/v1,"This work was supported by the grant R01DA050540 (H.X.) from the National Institute on Drug Abuse, National Institutes of Health.",True,False,False acknowledgement,10.48550/arxiv.1804.05172,doi10.48550/arxiv.1804.05172,This research was supported by the Australian Research Council Centre of Excellence for Robotic Vision (project number CE140100016).,True,False,False acknowledgement,10.48550/arxiv.1705.08255,doi10.48550/arxiv.1705.08255,This work is supported by the China Scholarship Council (NO. 201506010331).,True,False,False acknowledgement,10.48550/arxiv.2306.16448,doi10.48550/arxiv.2306.16448,"BZ is supported by a Trinity College internal graduate studentship. DZ is supported by a Junior Research Fellowship from St. John's College, Oxford.",True,False,False acknowledgement,10.1101/2023.01.05.522863,doi10.1101/2023.01.05.522863,K.F.W. thanks the Chateaubriand Fellowship program: this material is based upon research supported by the Chateaubriand Fellowship of the Office for Science & Technology of the Embassy of France in the United States. A.I. acknowledges support from Glyco@Alps (ANR-15-IDEX-0002) and Labex Arcane/CBH-EUR-GS (ANR-17-EURE-0003). M.C.J. acknowledges DTRA (HDTRA1-21-1-0038) and the National Science Foundation (MCB 1936789). The authors also acknowledge support from ICMG UAR 2607 for BLI facilities.,True,False,False acknowledgement,10.1101/2021.07.13.452147,doi10.1101/2021.07.13.452147,"M.O. was supported by JSPS KAKENHI grants 17H06299, 17H06302, and 18H04031 as well as JST-Mirai Program grant JPMJMI19G7. Y.S was supported by JSPS KAKENHI grant 19K22404. I. N. was partially supported by JST CREST grant JPMJCR16G3 and JPMJCR1926. This research was partially supported by the Platform Project for Supporting in Drug Discovery and Life Science Research (Platform for Drug Discovery, Informatics, and Structural Life Science) from the Japan Agency for Medical Research and Development (AMED). J. N. W. was supported by the Honjo International Scholarship Foundation.",True,True,False acknowledgement,10.48550/arxiv.2209.15114,doi10.48550/arxiv.2209.15114,"The first author is grateful for support from NSF Grant DMS-2200728. The research of the second author conducted for this paper is supported by the Pacific Institute for the Mathematical Sciences (PIMS). The research and findings may not reflect those of the Institute. This work was supported by a grant from the Simons Foundation (853830, LR). The third author is also grateful for support from a 2021-2023 Dean's Faculty Fellowship from Vanderbilt University. The first author thanks the Max Planck Institute for Mathematics, Bonn, Germany, for its hospitality and support during portions of the writing of this paper. The authors also acknowledge the Vanderbilt University ""100 Years of Mock Theta Functions: New Directions in Partitions, Modular Forms, and Mock Modular Forms"" Conference in May 2022, at which they discussed the topic of this paper and related ideas. This conference was supported by The Shanks Endowment, Vanderbilt University, NSF Grant: ""Conference on ""100 Years of Mock Theta Functions; New Directions in Partitions, Modular Forms, and Mock Modular Forms"""" award number: DMS-1951393, and NSA grant ""100 Years of Mock Theta Functions,"" award number: H98230-20-1-0022.",True,False,False acknowledgement,10.1101/468306,doi10.1101/468306,"This project was supported by the Clinical and Translational Science Award (CTSA) program, through the NIH National Center for Advancing Translational Sciences (NCATS), grant UL1TR000427, and by the University of Wisconsin-Madison Office of the Chancellor and the Vice Chancellor for Research and Graduate Education with funding from the Wisconsin Alumni Research Foundation. B.F.D. was supported by an NLM training grant to the Computation and Informatics in Biology and Medicine Training Program [NLM 5T15LM007359]. This research was also supported by the NIH grants R01 AG054047, R01 AG27161, and P2C HD047873, Helen Bader Foundation, Northwestern Mutual Foundation, Extendicare Foundation, and State of Wisconsin. C.C. was supported by NIH grants P01 AG003991, R01 AG057777, R01 AG044546, RF1 AG053303, RF1 AG058501, and U01 AG058922. T.J.H. was supported by NIH grants R01 AG059716, R21 AG059941, and K01 AG049164. The authors thank the University of Wisconsin Madison Biotechnology Center Gene Expression Center for providing Illumina Infinium genotyping services. We thank the International Genomics of Alzheimer's Project (IGAP) for providing summary results data for these analyses. The investigators within IGAP contributed to the design and implementation of IGAP and/or provided data but did not participate in analysis or writing of this report. IGAP was made possible by the generous participation of the subjects and their families. The i-Select chips were funded by the French National Foundation on Alzheimer's disease and related disorders. EADI was supported by the LABEX (laboratory of excellence program investment for the future) DISTALZ grant, Inserm, Institut Pasteur de Lille, Université de Lille 2, and the Lille University Hospital. GERAD was supported by the Medical Research Council (Grant n° 503480), Alzheimer's Research UK (Grant n° 503176), the Wellcome Trust (Grant n° 082604/2/07/Z), and German Federal Ministry of Education and Research (BMBF): Competence Network Dementia (CND) grant n° 01GI0102, 01GI0711, 01GI0420. CHARGE was partly supported by the NIH/NIA grant R01 AG033193 and the NIA AG081220 and AGES contract N01–AG–12100, the NHLBI grant R01 HL105756, the Icelandic Heart Association, and the Erasmus Medical Center and Erasmus University. ADGC was supported by the NIH/NIA grants: U01 AG032984, U24 AG021886, U01 AG016976, and the Alzheimer's Association grant ADGC–10–196728. We thank contributors who collected samples used in this study, as well as patients and their families, whose help and participation made this work possible; Data for this study were prepared, archived, and distributed by the National Institute on Aging Alzheimer's Disease Data Storage Site (NIAGADS) at the University of Pennsylvania (U24-AG041689-01). We are also grateful for ADGC and its investigators for providing GWAS summary statistics for various AD phenotypes. The full acknowledgement to ADGC is included in the supplementary material. Summary statistics for cognitively defined subgroups was generated with support from R01AG042437. Data were from the Adult Changes in Thought (ACT) study, the Religious Orders Study (ROS), the Rush Memory and Aging Project (MAP), the Alzheimer's Disease Neuroimaging Initiative (ADNI), and the University of Pittsburgh Alzheimer's Center. ACT data collection was supported by U01 AG006781. ACT genotyping was supported by U01 HG006375. Cerebellum samples for genotyping for some ACT samples were prepared with support from P50 AG005136. ADNI data collection and genotyping were supported by U01 AG024904. Data collection and sharing was funded by U01 AG024904 and W81XWH-12-2- 0012. ADNI is funded by the National Institute on Aging, the National Institute of Biomedical Imaging and Bioengineering, and through generous contributions from the following: AbbVie, Alzheimer's Association; Alzheimer's Drug Discovery Foundation; Araclon Biotech; BioClinica, Inc.; Biogen; Bristol-Myers Squibb Company; CereSpir, Inc.; Cogstate; Eisai Inc.; Elan Pharmaceuticals, Inc.; Eli Lilly and Company; EuroImmun; F. Hoffmann-La Roche Ltd and its affiliated company Genentech, Inc.; Fujirebio; GE Healthcare; IXICO Ltd.; Janssen Alzheimer Immunotherapy Research & Development, LLC.; Johnson & | Johnson Pharmaceutical Research & Development LLC.; Lumosity; Lundbeck; Merck & Co., Inc.; Meso Scale Diagnostics, LLC.; NeuroRx Research; Neurotrack Technologies; Novartis Pharmaceuticals Corporation; Pfizer Inc.; Piramal Imaging; Servier; Takeda Pharmaceutical Company; and Transition Therapeutics. The Canadian Institutes of Health Research is providing funds to support ADNI clinical sites in Canada. Private sector contributions are facilitated by the Foundation for the National Institutes of Health (www.fnih.org). The grantee organization is the Northern California Institute for Research and Education, and the study is coordinated by the Alzheimer's Therapeutic Research Institute at the University of Southern California. ADNI data are disseminated by the Laboratory for Neuro Imaging at the University of Southern California. MAP data collection and genotyping were supported by R01 AG017917. Additional genotyping was supported by Kronos, Zinfandel, and U01 AG032984. ROS data collection and genotyping were supported by P30 AG10161, R01 AG15819, and R01 AG30146. Additional genotyping was supported by Kronos, Zinfandel, and U01 AG032984. PITT data collection were funded by P50 AG05133, R01 AG030653, and R01 AG041718.",True,True,False acknowledgement,10.48550/arxiv.1411.4426,doi10.48550/arxiv.1411.4426,"Acknowledgements. This project grew out of discussions started at the McGill University's Bellairs Institute, Barbados. We would like to thank Nicolas Curien for asking a question which led to the results in Section 5 , and thank Bénédicte Haas and him for sharing a draft of their work at the final stage of the preparation of this paper. Special thanks to the Brazilian-French Network in Mathematics for providing generous support for a visit of S.G. at ENS Paris. N.O. was supported by a NWO Veni grant.",True,False,False acknowledgement,10.48550/arxiv.math/0010299,doi10.48550/arxiv.math/0010299,*Research in part supported by NSF grant DMS9408994,True,False,False acknowledgement,10.48550/arxiv.q-bio/0506011,doi10.48550/arxiv.q-bio/0506011,We are grateful to Frances H. Arnold for insightful comments on the manuscript. This work was supported by NIH National Research Service Award 5 T32 MH19138 (to D.A.D.),True,False,False acknowledgement,10.48550/arxiv.2409.08338,doi10.48550/arxiv.2409.08338,"This study was supported by U01CA233363 from the National Cancer Institute (RJC) and by the Washington University in St. Louis School of Medicine Personalized Medicine Initiative (RJC). S.L., H.Z. and C.Y. are also supported by Heritage Research Institute for the Advancement of Medicine and Science at Caltech (Grant No. HMRI-15-09-01) and the Caltech Rothenberg Innovation Initiative A4188-Yang-3-A1. M.W. and R.G. are also supported 5R01CA182746 from the National Cancer Institute.",True,False,False acknowledgement,10.31235/osf.io/hxv35,doi10.31235/osf.io/hxv35,"Thiede acknowledges the assistance provided by the Population Research Institute at Penn State University, which is supported by the Eunice Kennedy Shriver National Institute on Child Health and Human Development (P2CHD041025). Thiede was also supported by the USDA National Institute of Food and Agriculture Multistate Research Project #PEN04623 (Accession #1013257). GIS support was provided by Philip McDaniel of UNC Libraries.",True,True,False acknowledgement,10.48550/arxiv.1703.00149,doi10.48550/arxiv.1703.00149,Giulia Rossi acknowledges funding from the ERC Starting Grant BioMNP – 677513. Part of the calculations was performed at CINECA under the HP10CGNEGB grant.,True,False,False acknowledgement,10.1101/2024.01.30.24301974,doi10.1101/2024.01.30.24301974,This work was supported in part through the computational and data resources and staff expertise provided by Scientific Computing and Data at the Icahn School of Medicine at Mount Sinai and supported by the Clinical and Translational Science Awards (CTSA) grant UL1TR004419 from the National Center for Advancing Translational Sciences. Research reported in this publication was also supported by the Office of Research Infrastructure of the National Institutes of Health under award number S10OD026880 and S10OD030463. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.,True,True,False acknowledgement,10.48550/arxiv.astro-ph/0107205,doi10.48550/arxiv.astro-ph/0107205,"ELW acknowledges the hospitality of the IAS during the writing of this paper. Astrophysics research at the IAS is supported by National Science Foundation Grant PHY-0070928 and the Ambrose Monell Foundation. The COBE datasets were developed by the NASA Goddard Space Flight Center under the guidance of the COBE Science Working Group and were provided by the NSSDC. This publication makes use of data products from the Two Micron All Sky Survey, which is a joint project of the University of Massachusetts and the Infrared Processing and Analysis Center, funded by the National Aeronautics and Space Administration and the National Science Foundation.",True,True,False acknowledgement,10.48550/arxiv.2311.09595,doi10.48550/arxiv.2311.09595,"The work of NB is partially supported by SERB POWER grant. Finally, we are thankful to the people of India for their generous support towards fundamental research.",True,False,False acknowledgement,10.21203/rs.3.rs-806107/v1,doi10.21203/rs.3.rs-806107/v1,JH and LR were partially supported by the NSF (DMS-1361240).,True,False,False acknowledgement,10.31219/osf.io/hzj7r,doi10.31219/osf.io/hzj7r,"Acknowledgements: The authors were supported by the National Institute of Health Research (NIHR) School for Public Health Research. AI, JBK, DO, and JD were supported by the NIHR University College London Hospital Biomedical Research Centre. JD was supported by an NIHR Advanced Fellowship and DO was also supported by the NIHR North Thames Applied Research Collaboration. This funder has no role in the study design, data collection, data analysis, data interpretation, or writing of the report. The views expressed in this article are those of the authors and not necessarily those of the NHS, the NIHR, or the Department of Health and Social Care. This study is based in part on data from the Clinical Practice Research Datalink obtained under licence from the UK Medicines and Healthcare Products Regulatory Agency. The data is provided by patients and collected by the NHS as part of their care and support. The interpretation and conclusions contained in this study are those of the authors alone.",True,True,False acknowledgement,10.1101/2023.11.12.566772,doi10.1101/2023.11.12.566772,"This work was supported by National Health and Medical Research Council (NHMRC, Australia) grants awarded to S.P. S.R. was funded by the doctorate program MOLIN (FWF, W1241) and an EMBO Short-Term Fellowship (8109).",True,False,False acknowledgement,10.48550/arxiv.1402.0980,doi10.48550/arxiv.1402.0980,"^1Supported by NNSF grant 10871125, 11071147 of China, NSF grant Y2006A17, Y2008A04 of Shandong Province, NSF J06P52 of Shandong Provincial Education Department, China",True,False,False acknowledgement,10.48550/arxiv.1209.1526,doi10.48550/arxiv.1209.1526,The author was supported by projects MTM2011-27739-C04-01 (Spain) and 2009SGR345 (Catalunya).,True,False,False acknowledgement,10.48550/arxiv.1411.0445,doi10.48550/arxiv.1411.0445,"The first author was supported by Gruppo Nazionale per l'Analisi Matematica, la Probabilità e le loro Applicazioni (GNAMPA) of Istituto Nazionale di Alta Matematica (INdAM).",True,False,False acknowledgement,10.48550/arxiv.1212.5942,doi10.48550/arxiv.1212.5942,"*Contact author: L. M. Briceño-Arias, luis.briceno@usm.cl, phone: +56 2 432 6662. This work was supported by CONICYT under grant FONDECYT 3120054, by ""Programa de financiamiento basal"" from the Center for Mathematical Modeling, Universidad de Chile, by Anillo ACT 1106, and by Project Math-Amsud N 13MATH01.",True,False,False acknowledgement,10.48550/arxiv.cond-mat/0701514,doi10.48550/arxiv.cond-mat/0701514,"A.D.A. is grateful to the School of Physics, University of Sydney for the USIRS award, and Kithriammah Soosay for the partial financial support. Special thanks to A. Stroppa for his explanation on the half-metallic character of MnGe and MnSi. X.Y.C. and C.S. gratefully acknowledge support from the Australian Research Council (ARC). K.R. acknowledges partial funding from the Malaysian grant No. SAGA 66-02-03-0077. Author-contributions; A.D.A. designed the overall structure of the theory, developed and explained all the ideas related to the theory with proofs, carried out all the analysis and wrote both the manuscript and the Appendix; X.Y.C and C.S. contributed to the idea that the valence states in the ionization energy theory can be related to the First-Principles charge states (in section III-A-1), and edited the manuscript; K.R. edited the manuscript.",True,False,False acknowledgement,10.26434/chemrxiv.13193858.v3,doi10.26434/chemrxiv.13193858.v3,"This work was partially supported by JSPS KAKENHI granted to K.T. (20H02422) and to S.K. (19K15287). The RXMC calculations were performed using ab Initio Configurational Sampling toolkit (abICS) [https://www.pasums.issp.u-tokyo.ac.jp/abics/en/] on joint-use supercomputing facilities at the Institute for Solid State Physics, the University of Tokyo. S.K. is also supported by CREST, Japan Science and Technology Agency (JPMJCR18J3).",True,False,False acknowledgement,10.48550/arxiv.1704.08142,doi10.48550/arxiv.1704.08142,"This work is finished in the Beijing Computational Science Research Center and is supported by the NSFC Grants No. 11275131 and No. 11675113; the Shandong Provincial Natural Science Foundation No.ZR2016AQ06; the Fundamental Research Funds for the Central Universities Grants No. 15CX08011A and No. 16CX02049A; Qingdao applied basic research program No. 15-9-1-103-jch, and a project sponsored by SRF for ROCS, SEM.",True,False,False acknowledgement,10.48550/arxiv.1206.3512,doi10.48550/arxiv.1206.3512,"Acknowledgements. The author would like to thank Dan Margalit and Ursula Hamenstädt for their comments on our earlier work in [2], which led the author to explore the more elementary arguments given for the main result of [2] on the commutator length of Dehn twists along boundary parallel curves. We are also grateful to the anonymous referee for pointing out the connections to Morita's work in [14]. The author was partially supported by the NSF grant DMS-0906912.",True,False,False acknowledgement,10.48550/arxiv.2010.11306,doi10.48550/arxiv.2010.11306,The research leading to these results has received funding from the European Research Council under the European Union's Seventh Framework Programme (FP7/2007-2013)/ERC Grant Agreement n.617779 (INTERFERE) and also the Cross-Ministry Giga KOREA Project (GigaKOREA GK20D0100) and the support from the WUT.,True,False,False acknowledgement,10.48550/arxiv.2410.02790,doi10.48550/arxiv.2410.02790,"This project is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – 425868829 and is part of Priority Program SPP2199 Scalable Interaction Paradigms for Pervasive Computing Environments.",True,False,False acknowledgement,10.1101/2022.06.30.498213,doi10.1101/2022.06.30.498213,This work was supported by the K.G.Jebsen foundation [grant number SKGJ-MED-020 to P.E.L.]; The Norwegian Cancer Society [grant number 190281-2017 to S.K.]; and The Norwegian Research Council [grant number 617344-1 to P.E.L.]. Funding for open access charge: The Norwegian Research Council.,True,False,False acknowledgement,10.21203/rs.2.23948/v2,doi10.21203/rs.2.23948/v2,"Christian Gerdesköld has received research funding support from Medibas. Anna Nager is employed part-time by Medibas. All other authors declare no conflict of interest. | This study was partially funded by Medibas. The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.",True,False,False acknowledgement,10.1101/2023.11.14.567083,doi10.1101/2023.11.14.567083,"This work was supported in part by NIH R01AI136697 (D.I.), Cancer Prevention and Research Institute of Texas (CPRIT) grant RP200058 (D.I.) and The Welch Foundation Research Grant AQ-1996-20190330 (D.I.). NMR and mass spectrometry analyses were conducted at the UTHSCSA Institutional Core Facilities supported in part by UTHSCSA and the Mays Cancer Center support grant NIH P30CA054174. We are grateful for the expert technical assistance of Sammy Pardo and Susan Weintraub.",True,False,False acknowledgement,10.21203/rs.3.rs-4964358/v1,doi10.21203/rs.3.rs-4964358/v1,"Funding: This project was made possible by grants from the Dutch research council (NWO), the joint program neurodegenerative diseases (JPND-program human brain clearance imaging), Fondation Leducq, and Alzheimer Netherland (grant WE.03-2019-08).",True,False,True acknowledgement,10.21203/rs.3.rs-1411109/v1,doi10.21203/rs.3.rs-1411109/v1,"This work was supported by the National Natural Science Foundation of China (42141019, 41831175, 91937302, 41721004, 41875083, and 42075029), Key Deployment Project of Centre for Ocean Mega-Research of Science, Chinese academy of science (COMS2019Q03), and Strategic Priority Research Program of Chinese Academy of Sciences (XDA20060501).",True,False,False acknowledgement,10.21203/rs.3.rs-3872028/v1,doi10.21203/rs.3.rs-3872028/v1,"This work was supported by National Natural Science Foundation of China, the Opening Project of the Jiangsu Key Laboratory for Environment Functional Materials (SJHG1803), and Innovation and Entrepreneurship Training Program for college students in Jiangsu Province (202310332105Y).",True,False,False acknowledgement,10.26434/chemrxiv.12212522.v1,doi10.26434/chemrxiv.12212522.v1,"M.M.S. and L.M. acknowledge funding from the European Union’s Horizon 2020 research and innovation programme under Marie Skłodowska-Curie grant agreement No 642414. A.N. acknowledges support from his previous Swiss National Science Foundation Early Postdoc Mobility Fellowship (P2BSP2_168751) and current Sir Henry Wellcome Postdoctoral Fellowship (209121_Z_17_Z) from the Wellcome Trust. R.C. acknowledges support from the Australian Research Council DECRA (DE170100315). C.D.S and M.M.S acknowledge the British Heart Foundation Cardiovascular Regenerative Medicine Centre (RM/13/1/30157). V.N. acknowledges support from the Ermenegildo Zegna Founder’s Scholarship program. V.N. and M.M.S. acknowledge support from the Rosetrees Trust. M.A.B. acknowledges the Freemasons Foundation of New Zealand through the Royal Society of New Zealand-Rutherford Foundation (MAB, RFT-ICT 1501-FF). M.A.B. and M.M.S. acknowledge support from the grant from the UK Regenerative Medicine Platform “Acellular Approaches for Therapeutic Delivery” (MR/K026682/1) and the Engineering and Physical Science Research Council (EPSRC) grant ""Bio-functionalised nanomaterials for ultrasensitive biosensing"" (EP/K020641/1). M.M.S. acknowledges support from the Wellcome Trust Senior Investigator Award (098411/Z/12/Z). | Experiments at the ISIS Neutron and Muon Source were supported by beamtime allocations from the Science and Technology Facilities Council (RB1810203). This work benefited from the use of the SasView application, originally developed under NSF award DMR-0520547. SasView contains code developed with funding from the European Union’s Horizon 2020 research and innovation programme under the SINE2020 project, grant agreement 654000. The authors acknowledge the use of microscopy facilities within the Harvey Flower Electron Microscopy Suite at Imperial College London. The Light Microscopy Facilities at the Francis Crick Institute London is acknowledged for providing access to the FCS machine.",True,True,False acknowledgement,10.21203/rs.3.rs-4248199/v1,doi10.21203/rs.3.rs-4248199/v1,"This work was supported by grants from the Ministry of Science and Technology of China (2019YFA0904400 to TY, 2021YFC2302500 to LS), Shanghai Municipal Science and Technology Major Project (ZD2021CY001), National Natural Science Foundation of China (32270984), Science and Technology Commission of Shanghai Municipality (23XD1400800), Shanghai Municipal Health Commission (GWVI-11.2-YQ46), Advanced Customer Cultivation Project of Wuhan National Biosafety Laboratory, Chinese Academy of Sciences (2022ACCP-MS06) and R&D Program of Guangzhou Laboratory (SRPG22-003). We thank the Center of Cryo-Electron Microscopy, Fudan University, for support with cryo-EM data collection. We thank Yao Wang from the Key Laboratory of Medical Molecular Virology, Shanghai Frontiers Science Center of Pathogenic Microorganisms and Infection, School of Basic Medical Sciences, Shanghai Medical College, Fudan University, for technical support.",True,True,False acknowledgement,10.48550/arxiv.2210.02385,doi10.48550/arxiv.2210.02385,"We are grateful to Yi Mao, Yao Zhang and Chun-Hao To for helpful suggestions and comments. We thank the anonymous referee for comments regarding the 21 cm experiments configuration and ""wedge"" issue. CMG is thankful to Alpha-Cen and the Cenca Bridge undergraduate remote internship program for their efforts on connecting undergraduate students from Central America and the Caribbean with researchers in other regions. HL and CMH were supported by OSU Presidential Fellowship, NASA award 15-WFIRST15-0008, Simons Foundation award 60052667, and the David \& Lucile Packard Foundation award 2021-72096. PMC was supported by NSFC grant No. 12050410236, the Major Key Project of PCL, and the Tsinghua Shui Mu Scholarship. We acknowledge the Pitzer Cluster at the Ohio Supercomputing Center (Ohio Supercomputer Center 1987) and Tsinghua Astrophysics High-Performance Computing platform at Tsinghua University for providing computational and data storage resources that have contributed to the research results reported within this paper.",True,True,False acknowledgement,10.48550/arxiv.2203.10970,doi10.48550/arxiv.2203.10970,"This work was supported by the Leverhulme Trust through the Leverhulme Research Centre for Functional Materials Design and the H2020 ERC Synergy Grant Autonomous Discovery of Advanced Materials under grant agreement no. 856405. Correspondence should be directed to gabriella.pizzuto@liverpool.ac.uk. | This image shows a robotic laboratory setup designed for automated solubility screening experiments. The system features a robotic arm positioned above a clear glass vial containing liquid, likely for conducting solubility tests on various materials. The setup is part of research supported by the Leverhulme Trust and ERC, aimed at training and evaluating model architectures for autonomous materials discovery.",True,False,False acknowledgement,10.1101/2023.09.28.559902,doi10.1101/2023.09.28.559902,"The study was funded by the Department for Environment, Food and Rural Affairs (DEFRA, UK), Biotechnology and Biological Sciences Research Council (BBSRC, UK) [Grant Numbers BBS/E/I/ 00007031/ 7034] and the University of Copenhagen and Statens Serum Institut.",True,False,False acknowledgement,10.48550/arxiv.1611.05503,doi10.48550/arxiv.1611.05503,Acknowledgments This work was supported mainly by the LIACS Media Lab at Leiden University and in part by the China Scholarship Council. We would like to thank NVIDIA for the donation of GPU cards.,True,False,False acknowledgement,10.1101/2022.12.19.521144,doi10.1101/2022.12.19.521144,"We are indebted to (1) UGC, for supporting the first author (SG) with his own research fellowship and contingency grant, (2) CSIR, for supporting the second and seventh authors (US and AD) with own respective research fellowship and contingency grant, (3) University of Kalyani, for supporting the third author (AP) with university research scholarship and contingency grant, (4) RUSA, for supporting the fourth author (SN) with project assistantship and partial support through the recurring grant under research project no. RUSA (C-10) / IP / 218, (5) DBT-GOI, for supporting the fifth author (SN) with research fellowship and partial support through the recurring grant under research project no. BT/PR28288/NNT/28/1558/2018U, (6) DST-GOI, for supporting the sixth author (SC) with his own INSPIRE research fellowship and contingency grant, (7) UGC-DAE for partial support through the recurring grant of its project no. CRS/2021-22/02/534, (8) DST-GOI for its ""FIST"" [SR/FST/LSI-623/2014(C)] and ""PURSE"" [SR/PURSE Phase 2/37(G)] Programs and UGC-GOI for its DRS(II)-SAP [F.5-3/2018/DRS-II(SAPII)], for providing different instrumental and infrastructural supports, and (9) Prof. Sukhen Das, Dept. of Physics, Jadavpur University, Kolkata for providing us the FESEM facility.",True,False,False acknowledgement,10.48550/arxiv.2011.14019,doi10.48550/arxiv.2011.14019,I thank Ulrich Nierste and Ivan Nišandžić for the enjoyable collaboration on the presented work and acknowledge the support from the doctoral school KSETA and the Graduate School Scholarship Programme of the German Academic Exchange Service (DAAD).,True,False,False acknowledgement,10.48550/arxiv.2407.06557,doi10.48550/arxiv.2407.06557,"This material is based upon work supported by the Department of Energy under Award Number DE-NE0009278. | This report was prepared as an account of work sponsored by an agency of the United States Government. Neither the United States Government nor any agency thereof, nor any of their employees, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof. The views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof.",True,False,False acknowledgement,10.21203/rs.3.rs-1890507/v1,doi10.21203/rs.3.rs-1890507/v1,"This study was funded by the National Natural Science Foundation of China (Nos. 81974281 and 81700999, China), the Natural Science Foundation of Hunan Province (Nos. 2020JJ2052 and 2018JJ3741, China), and the Chinese Cardiovascular Association Access Fund (2019-CCA-ACCESS-2020JJ2052, China).",True,False,False acknowledgement,10.48550/arxiv.1001.0728,doi10.48550/arxiv.1001.0728,"Acknowledgments This work was started at Dubna in August of 2009, when both of us were participating at Bogolyubov Conference on Quantum Field Theory and Elementary Particle Physics. We are grateful to K.G. Chetyrkin for discussions during this Conference. We also wish to thank V.M.Braun and D.J. Broadhurst for useful communications prior and after this event. One of us (ALK) is grateful to his colleagues for creating rather stimulating atmosphere during his stay at Th Unit of CERN up to 24 October, 2009 and to the Members of Organizing Committee of RADCOR-2009 for the invitation, hospitality and financial support during his stay at this important Symposium. The work of both of us was supported in part by the RFBR grant No. 08-01-00686, while the work of ALK in part by the grant of President of RF NS-1616.2008.2 as well.",True,False,False acknowledgement,10.48550/arxiv.2112.02237,doi10.48550/arxiv.2112.02237,"The second and the third authors are supported by NSFC (61702083, 61772003), Key Projects of Applied Basic Research in Sichuan Province (Grant No. 2020YJ0216), and National Key Research and Development Program of China (Grant No. 2020YFA0714001).",True,False,False acknowledgement,10.1101/2023.08.21.554179,doi10.1101/2023.08.21.554179,"We acknowledge funding from NIH R01s AI146779 (AGS); AI174875 (ABB); AI155447, AI137057, and AI153098 (DL), a Massachusetts Consortium on Pathogenesis Readiness (MassCPR) grant (AGS), and P01 AI168347 (AGS); training grants: NIGMS T32 GM007753 (BMH); T32 AI007245 (JF); F31 Al138368 (MS); F30 AI160908 (BMH). ABB is supported by the National Institutes for Drug Abuse (NIDA) Avenir New Innovator Award DP2DA040254, the MGH Transformative Scholars Program as well as funding from the Charles H. Hood Foundation (ABB). This independent research was supported by the Gilead Sciences Research Scholars Program in HIV (ABB).",True,False,False acknowledgement,10.1101/2020.04.17.039339,doi10.1101/2020.04.17.039339,"Funding: This work was supported by the following grants from the National Institutes of Health (F32CA210540-01A1, D.E.G.; UH3TR000481, S.C.G; R21CA208519, S.C.G., K.W., and D.L.).",True,False,False acknowledgement,10.21203/rs.3.rs-3577740/v1,doi10.21203/rs.3.rs-3577740/v1,This work was supported by the Tianjin Research Program of Application Foundation and Advanced Technology (15JCQNJC01300).,True,False,False acknowledgement,10.48550/arxiv.2205.02960,doi10.48550/arxiv.2205.02960,"We thank Peter Wolf for meaningful comments. In this work, HN, SM, TF, JK, YM, KN, and IO are supported by the JSPS KAKENHI Grant No. JP17J01176, JP20J01928 (KN), JP20J21866 (JK) JP19J21974 (HN), and JP20H05859 (IO), JSPS Grant-in-Aid for Scientific Research (B) No. 18H01224 (YM), Grant-in-Aid for Transformative Research Areas (A) No. 20H05850 and No. 20H05854 (YM), JST PRESTO Grant No. JMPJPR200B (YM) and Grant-in-Aid for JSPS Research Fellow No. 17J09103 (TF), Advanced Leading Graduate Course for Photon Science (HN), the Leading Graduate Course for Frontiers of Mathematical Sciences and Physics (JK), NSF PHY-1912649 (SM), and JSPS Overseas Research Fellowship (IO), respectively.",True,True,False acknowledgement,10.21203/rs.3.rs-765129/v1,doi10.21203/rs.3.rs-765129/v1,"This study is funded by the Science and Technology Program of Guangzhou, China (grant no. 202002030390). | We thank the patients for their willingness to participate in this study. Financial support from the Science and Technology Program of Guangzhou, China (grant no. 202002030390) is gratefully acknowledged.",True,False,False acknowledgement,10.21203/rs.3.rs-2020909/v1,doi10.21203/rs.3.rs-2020909/v1,This work was supported by a National Research Foundation of Korea grant funded by the South Korean government (MSIP) (Grant No. NRF-2019R1A2C3005227).,True,False,False acknowledgement,10.48550/arxiv.2301.10541,doi10.48550/arxiv.2301.10541,"This research is supported by the Teaching and Assessment Grant and Faculty Community for Active Learning Program, Duke Kunshan University, and National Science Foundation China for the project ""Trust Mechanism Design on Blockchain: An Interdisciplinary Approach of Game Theory, Reinforcement Learning, and Human-AI Interactions,"" where Luyao Zhang is the principal investigator.",True,False,False acknowledgement,10.48550/arxiv.0707.1677,doi10.48550/arxiv.0707.1677,This work was supported by CNPq and FAPESP.,True,False,False acknowledgement,10.48550/arxiv.2001.06479,doi10.48550/arxiv.2001.06479,This work was supported by a grant from NSERC. We thank NVIDIA for donating some of the GPUs used in this work.,True,False,False acknowledgement,10.1101/2023.05.18.541366,doi10.1101/2023.05.18.541366,No competing financial interests exist. This research was supported by intramural funds from the Center for Cancer Research of the National Institutes of Health,True,False,False acknowledgement,10.48550/arxiv.2108.01209,doi10.48550/arxiv.2108.01209,Research was partially supported by SNI and CONACyT.,True,False,False acknowledgement,10.21203/rs.3.rs-826997/v1,doi10.21203/rs.3.rs-826997/v1,"Funding: This study was funded by the US National Institutes of Health, grant numbers CA186107, CA176726, CA167552, DK120870, DK082486, HL35464, HL088521, DK058845, U01 CA167552, and HL034594. | Competing interests: All authors have completed the ICMJE uniform disclosure form at www.icmje.org/coi_disclosure.pdf and declare: support from the National Institutes of Health for the submitted work. All authors report no relationship or activity that could appear to have influenced the submitted work.",True,False,False acknowledgement,10.1101/2023.08.24.554680,doi10.1101/2023.08.24.554680,"This work was funded by the National Science Foundation (DEB-2011147, with the Fogarty International Center and 2208947 Postdoctoral Research Fellowships in Biology Program), the National Institutes of Health (R35GM133439, R01AI168097, and R01AI102918), the Stanford King Center on Global Development, Woods Institute for the Environment, Center for Innovation in Global Health, the Terman Award, The Rose Hills Foundation, and the Bing-Mooney Fellowship.",True,False,False acknowledgement,10.1101/2023.02.07.527357,doi10.1101/2023.02.07.527357,"Acknowledgements: This study was supported by grants from the National Institute of Mental Health (NIMH) (R01MH118349, R01MH120125, R01MH121433). JMV and BDL were supported in part by NIH T32 training grants (T32GM135123 and T32GM067553, respectively). We gratefully acknowledge technical support from UNC research Core facilities which are supported by University Cancer Research Fund Comprehensive Cancer Center Core Support grant (P30-CA016086). The UNC Flow Cytometry Core Facility is supported in part by North Carolina Biotech Center Institutional Support Grant 2017-IDG-1025 and NIH 1UM2AI30836-01. The UNC High Throughput Sequencing Facility receives support from the UNC Center for Mental Health and Susceptibility grant (P30-ES010126). We thank Adriana Beltran and Sarahi Gabriela Molina at the UNC Stem Cell Core Facility for access to instruments. We thank Mauro Calabrese for generous access to the TapeStation instrument for sequencing library QC.",True,False,False acknowledgement,10.1101/2024.04.02.587850,doi10.1101/2024.04.02.587850,Funding: This research was supported by the National Institutes of Health under Award 1R01AI181600-01 and Subaward 6069-SC24-11 to G.V. and National Institutes of Health under Award No. R15GM122013 to P.T.,True,False,False acknowledgement,10.48550/arxiv.2407.10382,doi10.48550/arxiv.2407.10382,This work was partially supported by NSF CAREER No. 2337412.,True,False,False acknowledgement,10.48550/arxiv.2005.07848,doi10.48550/arxiv.2005.07848,"We thank to Department of atomic energy for providing financial support. SB thanks DAAD for providing financial support as a guest scientist to carry out the sample preparation at FZ Juelich, Germany. BBS acknowledges DST for INSPIRE faculty fellowship. PG and KR acknowledge UGC and CSIR for JRF fellowships, respectively.",True,False,False acknowledgement,10.48550/arxiv.2401.02411,doi10.48550/arxiv.2401.02411,"We thank David Luebke, Tero Karras, Michael Stengel, Amrita Mazumdar, Yash Belhe, and Nithin Raghavan for feedback on drafts and early discussions. Koki Nagano was partially supported by DARPA's Semantic Forensics (SemaFor) contract (HR0011-20-3-0005). The views and conclusions contained in this document are those of the authors and should not be interpreted as representing the official policies, either expressed or implied, of the U.S. Government. This work was funded in part by an NSF Graduate Fellowship, ONR Grant N00014-23-1-2526, and the Ronald L. Graham Chair. Manmohan Chandraker acknowledges support of of NSF IIS 2110409. Distribution Statement ""A"" (Approved for Public Release, Distribution Unlimited).",True,False,False acknowledgement,10.1101/056911,doi10.1101/056911,"Funding was from grant no. 094879/B/10/Z from The Wellcome Trust, UK to HS and MSI and intramural funds FROM SINCASK TO MSI from JNCASR to MSI.",True,False,False acknowledgement,10.48550/arxiv.2309.05816,doi10.48550/arxiv.2309.05816,"†Department of Statistics and Actuarial Science, University of Waterloo, Canada. wang@uwaterloo.ca. RW acknowledges financial support from the Natural Sciences and Engineering Research Council of Canada (RGPIN-2018-03823 and CRC-2022-00141.",True,False,False acknowledgement,10.21203/rs.3.rs-3625241/v1,doi10.21203/rs.3.rs-3625241/v1,"This work was funded by NAFOSTED under grant number 105.08-2019.337. We would like to greatly thank Laboratoire Eau et Environnement (LEE, Université Gustave Eiffel, campus Nantes) for its technical and scientific support.",True,False,False acknowledgement,10.48550/arxiv.2405.00209,doi10.48550/arxiv.2405.00209,"The authors would like to thank R. R. Almeida and D. H. Froula for insightful discus- sions. The work of M.F. is supported by the European Union’s Horizon Europe research and innovation program under the Marie Sklodowska-Curie Grant Agreement No. 101105246- STEFF. The work of J.P.P., D.R., and A.D. is supported by the Office of Fusion Energy Sciences under Award Numbers DE-SC0021057, the Department of Energy National Nuclear Security Administration under Award Number DE-NA0004144, the University of Rochester, and the New York State Energy Research and Development Authority. This report was pre- pared as an account of work sponsored by an agency of the US Government. Neither the US Government nor any agency thereof, nor any of their employees, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. Reference herein to any specific commer- cial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the US Government or any agency thereof. The views and opinions of authors expressed herein do not necessarily state or reflect those of the US Government or any agency thereof.",True,False,False acknowledgement,10.1101/596940,doi10.1101/596940,"We thank Virginie Courchet, Miyako Hirabayashi and Qiaolian Liu for excellent technical help. We thank members of the Polleux lab for valuable discussions and inputs. This work was supported by NIH (RO1NS067557) (FP), the Roger De Spoelberch Foundation (FP), Netherlands Organization for Scientific Research (NWO Rubicon 825.14.017) (ERES), the European Molecular Biology Organization (EMBO Long-Term Fellowship ALTF 1055-2014) (ERES) and K99.",True,False,False acknowledgement,10.48550/arxiv.2206.02195,doi10.48550/arxiv.2206.02195,"This work was supported by the National Key Research and Development Program of China (2018YFE0103100), the National Natural Science Foundation of China (12125508, 11935020), Program of Shanghai Academic/Technology Research Leader (21XD1404100), and Shanghai Pilot Program for Basic Research - Chinese Academy of Science, Shanghai Branch (JCYJ-SHFY-2021-010).",True,False,True acknowledgement,10.48550/arxiv.cond-mat/0209046,doi10.48550/arxiv.cond-mat/0209046,"Two of us (L.Z. and N.Z.) would like to acknowledge the hospitality of the Abdus Salam ICTP (Trieste, Italy) during the progress of this work. Financial support from the Arab Fund is acknoledged by N.Z.",True,False,False acknowledgement,10.48550/arxiv.math-ph/0210031,doi10.48550/arxiv.math-ph/0210031,¹Research partly supported by the DFG in the priority program Quasicrystals,True,False,False acknowledgement,10.46855/energy-proceedings-3212,doi10.46855/energy-proceedings-3212,"This work is funded partly by the National Natural Science Fund of China (Grant No. 61803359), and partly by the Fundamental Research Funds for the Central Universities (WK2100100032).",True,False,False acknowledgement,10.26434/chemrxiv-2023-8cxnf,doi10.26434/chemrxiv-2023-8cxnf,"We thank Jacob Baas, Henk Bonder, Marco Asa, and Joaquín Márquez for their technical support. We are also grateful to NanoLab and Polifab facilities and their staff at the University of Groningen and Politecnico di Milano. This work was supported by the start-up grant of the FSE at the University of Groningen, the Netherlands, and by a postdoctoral | fellowship granted to Miguel Badillo (CVU 356403) by The National Council for the Humanities, Science and Technology (CONAHCYT), México. We also acknowledge the financial support of the CogniGron research center and the Ubbo Emmius Funds (Univ. of Groningen).",True,False,False acknowledgement,10.1101/301572,doi10.1101/301572,"Acknowledgements: We thank LHSC IT, Compute Canada, SHARCNet for IT and HPC resources. This study was supported by Heart and Stroke grant (G-17-0018311, PI: CWM).",True,False,False acknowledgement,10.48550/arxiv.0711.1181,doi10.48550/arxiv.0711.1181,The authors are partially supported by the DGI MTM2005-03227. | The final version of this paper was completed during Sergio Estrada's stay at department of Mathematics of the University of Kentucky with the support of a MEC/Fulbright grant from the Spanish Secretaría de Estado de Universidades e Investigación del Ministerio de Educación y Ciencia.,True,False,False acknowledgement,10.1101/2021.04.28.21255719,doi10.1101/2021.04.28.21255719,"NMP was funded by the William Harvey Research Foundation, HPR and FRMBO were funded by National Council for Scientific and Technological Development (CNPq) fellowship. This study was supported by the German Research Foundation to LM (DFG, MA 7082/3-1), to CS (DFG, STO 1099/8-1) and by an intramural grant to EZ (START 131/19), National Council for Scientific and Technological Development to RS (CNPq, Brazil, Grant 409018/2018-0).",True,False,False acknowledgement,10.48550/arxiv.2104.12113,doi10.48550/arxiv.2104.12113,"This work was supported, in part, by the Swedish Research Council under grant 2018-03701, the Marie Skłodowska-Curie Individual Fellowships (H2020-MSCA-IF-2019) Grant 888913 (OTFS-RADCOM), the Vinnova 5GPOS project under grant 2019-03085, the EU H2020 RISE-6G project, the Spanish Ministry of Science, Innovation and Universities under Projects TEC2017-89925-R and by the ICREA Academia Programme.",True,False,False acknowledgement,10.21203/rs.3.rs-322362/v1,doi10.21203/rs.3.rs-322362/v1,C.F. was financially supported by the Swiss National Science Foundation (grant No 31003A_176319). The authors declare no potential conflict of interest.,True,False,False acknowledgement,10.1101/445098,doi10.1101/445098,"We thank the ""Förderkreis der Dresdner Herz-Kreislauf-Tage"" for supporting this study with the scientific research grant ""Forschungspreis der Dresdner Herz-Kreislauf-Tage"". | S.R.K. designed and performed the experiments, acquired funding, analyzed the data, prepared the figures and wrote the paper. ... A.E.A. supervised the work, acquired funding and wrote the paper.",True,True,False acknowledgement,10.21203/rs.3.rs-1310801/v1,doi10.21203/rs.3.rs-1310801/v1,"This research was sponsored by funds from the Zhongyuan Academician Foundation (212101510001), the Fundamental Research Funds for State Key Laboratory of Cotton Biology (CB2021C08), and the General Program of the National Natural Science Foundation of China (31871679).",True,False,False acknowledgement,10.1101/2022.07.17.500355,doi10.1101/2022.07.17.500355,"This study was supported by NIH 5R01NS110552 (M.Y. and J.G), The Ruth K. Broad Biomedical Research Foundation (M.Y.) and the Duke Institute for Brain Sciences (DIBS).",True,False,False acknowledgement,10.26434/chemrxiv.7283474.v1,doi10.26434/chemrxiv.7283474.v1,"This project was supported in part by funding provided by the USC Aiken College of Sciences and Engineering Summer Scholars Institute. The Summer Scholars Institute is supported by the Workforce Opportunities in Regional Careers (WORC) grant, ADP, and the South Carolina IDeA Networks of Biomedical Research (SC INBRE) Support was also provided through a RISE grant from the University of South Carolina Office of the Vice President for Research. The authors are particularly grateful to Prof. Chad Leverette (USC Aiken) for assistance in using the InVia Raman microscope, as well as to instrumental experts Mr. Patrick Woodell (Applied Research Center, Aiken, SC, SEM/EDS) and Dr. Stavros Karakalos (USC Columbia) for their skilled work in collecting data on the materials described in this report.",True,True,False acknowledgement,10.48550/arxiv.2203.05137,doi10.48550/arxiv.2203.05137,"Acknowledgements. Research was sponsored by the Army Research Office and was accomplished under Grant Number W911NF-20-1-0080, as well as by the ARL DCIST CRA W911NF-17-2-0181, NSF TRIPODS 1934960, and NSF CPS 2038873 grants.",True,False,False acknowledgement,10.1101/295683,doi10.1101/295683,This work was funded by the Medical Research Council (UK) intramural program MC-A060-5PQ10.,True,False,False acknowledgement,10.48550/arxiv.1112.2844,doi10.48550/arxiv.1112.2844,"*This work is supported in part by the National Natural Science Foundation (Nos. 60873055, 61073054, 61100001), the Natural Science Foundation of Guangdong Province of China (No. 10251027501000004), the Fundamental Research Funds for the Central Universities (Nos. 10lgzd12,11lgpy36), the Research Foundation for the Doctoral Program of Higher School of Ministry of Education (Nos. 20100171110042, 20100171120051) of China, the China Postdoctoral Science Foundation project (Nos. 20090460808, 201003375), and the project of SQIG at IT, funded by FCT and EU FEDER projects projects QSec PTDC/EIA/67661/2006, AMDSC UTAAustin/MAT/0057/2008, NoE Euro-NF, and IT Project QuantTel.",True,False,False acknowledgement,10.48550/arxiv.2108.04667,doi10.48550/arxiv.2108.04667,"This paper was not presented at any IFAC meeting. This work is financially supported by the Foundation for Innovative Research Groups of the National Natural Science Foundation of China with grant No. 61821004, the National Natural Science Foundation of China with grant No. 62103235 and the Natural Science Foundation of Shandong Province with grant No. ZR2020QF118. Corresponding author: Kai-hua Xi.",True,False,False acknowledgement,10.1101/2020.09.09.285890,doi10.1101/2020.09.09.285890,"This work was supported by the National Natural Science Foundation of China (31522028, 81571056), the Open Research Fund of the State Key Laboratory of Cognitive Neuroscience and Learning (CNLZD1503), and the PhD scholarship (201806040186) of the Chinese Scholarship Council.",True,False,False acknowledgement,10.2139/ssrn.4819824,doi10.2139/ssrn.4819824,"This research has been partially funded by the TTRIP project (2022-2025) of the French National Research Agency (ANR) under the project ANR-21-CE19-0037-01. Financial support has also been obtained through a grant from the MITI (Mission for Transversal and Interdisciplinary Initiatives) of CNRS, the French National Centre for Scientific Research. The NPI Řež - experiment was carried out at the CANAM infrastructure. It was supported by the French-Czech project SPIRAL2-CZ EF16_013/0001679 and the NuAG (Nuclear Astrophysics and radiobioloGy) bilateral agreement between NPI and GANIL/SPIRAL2. Isotopic measurements of the targets were done at PATERSON, the IRSN’s mass spectrometry platform, under the contribution number 25. IJCLab team wants to thank all the SIDONIE exploitation team for the fabrication of the enriched targets, and H. Lefort from IJCLab, for his technical work during the preparation of experiments.",True,False,False acknowledgement,10.48550/arxiv.2211.02898,doi10.48550/arxiv.2211.02898,"J.-H.X. gratefully acknowledges the financial support from the National Natural Science Foundation of China (NSFC) under grant no. 92052102 and 12272006, and Joint Laboratory of Marine Hydrodynamics and Ocean Engineering, Pilot National Laboratory for Marine Science and Technology (Qingdao) under grant No. 2022QNLM010201.",True,False,False acknowledgement,10.48550/arxiv.2307.01296,doi10.48550/arxiv.2307.01296,"M.T. acknowledges financial support of the Norwegian Directorate for Higher Education and Skills (DIKU) under Grant ""CPEA-LT-2016/10094 - From Strong Interacting Matter to Dark Matter."" The work of L.B. and E.Z. was supported by the Norwegian Research Council (NFR) under grant No. 255253/F50 - ""CERN Heavy Ion Theory"". Computer calculations were made at SAGA (UiO, Oslo) computer cluster facilities.",True,False,False acknowledgement,10.21203/rs.3.rs-2971566/v1,doi10.21203/rs.3.rs-2971566/v1,This work was supported by the Swiss National Science Foundation under grant no. 10531C_173322/1.,True,False,False acknowledgement,10.21203/rs.3.rs-1603952/v1,doi10.21203/rs.3.rs-1603952/v1,"Funding. This work was supported by the National Natural Science Foundation, China (No. 51775038).",True,False,False acknowledgement,10.2139/ssrn.4709849,doi10.2139/ssrn.4709849,"This work was supported by the National Natural Science Foundation of China (Grant No. 22073062, 21774075).",True,False,False acknowledgement,10.48550/arxiv.2210.11750,doi10.48550/arxiv.2210.11750,"This work was partially supported by a Grant-in-Aid for JSPS Fellows Grant Number JP19J12159, JSPS KAKENHI Grant Number JP20H00230, and JST [Moonshot R&D] [Grant Number JPMJMS2032].",True,False,False acknowledgement,10.21203/rs.3.rs-774555/v1,doi10.21203/rs.3.rs-774555/v1,"We acknowledge the satellite and reanalysis data freely provided by the Land Cover (LC) project of the European Space Agency (ESA) Climate Change Initiative (CCI), the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC), the Oak Ridge National Laboratory Distributed Active Archive Center (ORNL DAAC), and the Land Processes Distributed Active Archive Center (LP DAAC) from NASA Earth Observing System Data and Information System (EOSDIS). This research was supported by a National Research Foundation of Korea (NRF) grant funded by the Korean government (MSIT) (NRF-2019R1A2B5B01070196).",True,True,False acknowledgement,10.31234/osf.io/x5vgj,doi10.31234/osf.io/x5vgj,WK and JMB were supported by ONR/DoD N00014-23-1-2792. JMB was supported by NIH AG075590.,True,False,False acknowledgement,10.48550/arxiv.2410.10646,doi10.48550/arxiv.2410.10646,James is supported by the Vector Scholarship in AI and the Queen Elizabeth II Graduate Scholarship.,True,False,False acknowledgement,10.26434/chemrxiv-2022-w6s0g,doi10.26434/chemrxiv-2022-w6s0g,"The authors are thankful to Dr. Matteo Aldeghi and Jonathan Zaslavsky for helpful discussion. R.J.H. gratefully acknowledges the Natural Sciences and Engineering Research Council of Canada (NSERC) for provision of the Postgraduate Scholarships-Doctoral Program (PGSD3-534584-2019) as well as support from the Vector Institute. C.A. acknowledges an NSERC Discovery grant (RGPIN-2022-04910). A.A.-G. acknowledges support from the Canada 150 Research Chairs program and CIFAR, as well as the generous support of Anders G. Fröseth.",True,False,False acknowledgement,10.1101/2021.01.10.21249523,doi10.1101/2021.01.10.21249523,"This work was supported by internal seed funding from the Li Ka Shing Faculty of Medicine, The University of Hong Kong. The funder had no role in the study design, analysis, or decision to publish the results. Mr Blais is supported by the Hong Kong Research Grants Council as a recipient of the Hong Kong PhD Fellowship Scheme.",True,False,False acknowledgement,10.48550/arxiv.2102.08539,doi10.48550/arxiv.2102.08539,"This study is supported by International Science & Technology Cooperation Program of China under 2019YFE0100200, Tsinghua-Toyota Joint Research Institute Cross-discipline Program and Xilinx.",True,False,False acknowledgement,10.48550/arxiv.2302.03588,doi10.48550/arxiv.2302.03588,"This work was supported in part by National Science Foundation Grant DMS-2006990, by DGES Grant PGC2018-098474-B-C21, and by a grant of the Ministry of Research, Innovation and Digitization, CNCS/CCCDI – UEFISCDI, project number PN-III-P1-1.1-TE-2019-1306, within PNCDI III.",True,False,False acknowledgement,10.48550/arxiv.2209.13339,doi10.48550/arxiv.2209.13339,"The authors were supported by the project ""VALERE: VAnviteLli pEr la RicErca"" of the University of Campania ""Luigi Vanvitelli"" and by the Italian National Group for Algebraic and Geometric Structures and their Applications (GNSAGA - INdAM).",True,False,False acknowledgement,10.1101/2020.07.27.219360,doi10.1101/2020.07.27.219360,"This work was supported by the DFG (SO 429/4-1 to M.S). We thank Bettina Helten for the co- analysis of the speech samples, Michael Bartl for supporting the organization of the behavioral data, and Britta Perl and Ilona Pfahlert for assistance with the acquisition of the MRI data.",True,False,False acknowledgement,10.26434/chemrxiv-2024-m3rtp-v2,doi10.26434/chemrxiv-2024-m3rtp-v2,"The authors acknowledge financial support from the Luxembourg National Research Fund: AFR PhD Grant ""POMO(AFR PhD/19/MS, GrNum:13590856) and from the European Research Council (ERC-AdG FITMOL) The authors thank Dmitry V. Fedorov, Matteo Barborini, Matej Ditte, and Péter Szabó for many fruitful discussions.",True,False,False acknowledgement,10.48550/arxiv.1710.00466,doi10.48550/arxiv.1710.00466,** Research supported in part by NSERC. | work was in part supported by Networks Sciences and Technologies (NeST). | † Research supported by the Polish National Science Centre grant DEC-2012/06/M/ST6/00459.,True,False,False acknowledgement,10.21203/rs.3.rs-4116788/v1,doi10.21203/rs.3.rs-4116788/v1,Funding: The study was funded by the Israel Science Foundation (grant no. 1321/12 to AH).,True,False,False acknowledgement,10.1101/553776,doi10.1101/553776,"Wellcome (Grant ref: 098610/Z/12/Z and 098610/B/12/A) provides core support for MEIRU. ALGS and DAL work in a Unit that is supported by the University of Bristol and UK Medical Research Council (MC_UU_00011/6) and DAL is a UK National Institute of Research Senior Investigator (NF-SI-0611-10196). No funders had any influence on the analysis plan, results presented or decision to publish. The views expressed in this paper are those of the authors and not necessarily any funding body. | We are grateful to the Karonga and Lilongwe communities, participants and traditional authorities, for their engagement in this work. This study would not have been possible without the MEIRU and Malawi Ministry of Health. We thank the Wellcome Trust for supporting our study.",True,False,False acknowledgement,10.48550/arxiv.2405.12831,doi10.48550/arxiv.2405.12831,"Rafael López is a member of the IMAG and of the Research Group ""Problemas variacionales en geometría"", Junta de Andalucía (FQM 325). This research has been partially supported by MINECO/MICINN/FEDER grant no. PID2020-117868GB-I00, and by the ""María de Maeztu"" Excellence Unit IMAG, reference CEX2020-001105-M, funded by MCINN/AEI/10.13039/501100011033/ CEX2020-001105-M.",True,False,False acknowledgement,10.21203/rs.3.rs-3773183/v1,doi10.21203/rs.3.rs-3773183/v1,"Funding: Kazeem Adefemi is a trainee in the Cancer Research Training Program (CRTP) of the Beatrice Hunter Cancer Research Institute, with funds generously provided by the Canadian Cancer Society’s JD Irving, Limited – Excellence in Cancer Research Fund. | Kazeem Adefemi was also a recipient of the Aging Research Centre-Newfoundland and Labrador (ARC-NL) Graduate Fellowships awards.",True,False,False acknowledgement,10.1101/382895,doi10.1101/382895,"We thank all members of the Gilad lab for helpful discussions, Kristen Patterson for experimental assistance, and the Genomics Core Facility at the University of Chicago for sequencing the RNA-seq libraries. We thank The Genotype-Tissue Expression (GTEx) Project, supported by the Common Fund of the Office of the Director of the National Institutes of Health, and by NCI, NHGRI, NHLBI, NIDA, NIMH, and NINDS, for providing data. The data used for the analyses described in this manuscript were obtained from the GTEx portal v7 on May 24th 2018. M.C.W is supported by an EMBO Long-Term Fellowship (ALTF 751-2014), and the European Commission Marie Curie Actions. This work was funded by NIH grants GM120167 and HL139447.",True,True,False acknowledgement,10.1101/220806,doi10.1101/220806,"This work was funded by an NSERC Discovery Grant and Ontario Early Researcher Award (ERA) to A.C.D. NIH grants (R01NS080833 and R01AI132387) to M.D. M.D. acknowledges support by the Harvard Digestive Disease Center (NIH P30DK034854) and Boston Children's Hospital Intellectual and Developmental Disabilities Research Center (NIH P30HD18655). M.D. holds the Investigator in the Pathogenesis of Infectious Disease award from the Burroughs Wellcome Fund. This work was partially supported by Department of Homeland Security Grant through Inter Agency Agreement. The funding agencies had no role in the design of the study, data collection, interpretation of data, or the decision to submit the work for publication.",True,True,False acknowledgement,10.1101/2023.03.30.23287941,doi10.1101/2023.03.30.23287941,Acknowledgements: A.V. is a research fellow supported by the Sarnoff Cardiovascular Research Fellowship.,True,False,False acknowledgement,10.1101/2021.10.22.465515,doi10.1101/2021.10.22.465515,Competing Interests: This work was supported by Simons Foundation Grant P49802 (to DAC). | This work and SJG were supported by the Simons Foundation Grant P49802 (to DAC). JLW was supported by a postdoctoral fellowship Simons Foundation Award 653212. We thank Ben Tully and the members of the Bioinformatics Virtual Coordination Network (BVCN) for creating and contributing to the online platform that inspired this project. | Competing Interests This work was supported by Simons Foundation Grant P49802 (to DAC).,True,True,False acknowledgement,10.1101/325480,doi10.1101/325480,"ACKNOWLEDGEMENTS. We thank Kivanc Birsoy, Paul Cohen, Henrik Molina, Sohail Malik, and Ming Yu for valuable discussions, Kenneth Lay and Elaine Fuchs for help with LICOR Odyssey CLx imaging system, Wenxiang Hu (U. Pennsylvania) and Chunjie Jiang (U. Pennsylvania) for bioinformatic discussions, Xiaofei Yu for help with cell culture, the Rockefeller University Genomics Resource Center and Comparative Bioscience Center. This project was supported by funding from the JPB Foundation (CEN 5402133; J.M.F.) and NIH (R01-DK071900; R.G.R.). Y.Z. acknowledges support from the Howard Hughes Medical Institute. O.S.D. acknowledges support from the Swedish Research Council Fellowship and The Swedish Medical Research Society Fellowship. M.A.L. acknowledges support from NIH (R01-DK049780) and the JPB Foundation.",True,False,False acknowledgement,10.48550/arxiv.2008.00091,doi10.48550/arxiv.2008.00091,"Acknowledgements. Pierre Schapira gave helpful comments on a draft of this paper, as did a referee. Portions of this work were funded by NSF grant DMS-1702395.",True,False,False acknowledgement,10.48550/arxiv.2209.13133,doi10.48550/arxiv.2209.13133,"This research is supported by the National Research Foundation, Singapore under its Strategic Capability Research Centres Funding Initiative, the National Natural Science Foundation of China, No.:61902223, No.:61906108 and Young creative team in universities of Shandong Province, No.:2020KJN012. Any opinions, findings and conclusions or recommendations expressed in this material are those of the author(s) and do not reflect the views of National Research Foundation, Singapore.",True,False,False acknowledgement,10.21203/rs.3.rs-3069407/v1,doi10.21203/rs.3.rs-3069407/v1,"The research is financed by the National Science Centre, Poland, from the programme Opus 13, grant agreement No2017/25/B/ST10/02235 and the internal Polish Geological Institute grant no. 62.9012.2016.00.0) This is a contribution to the ICDP and NERC project JET (grant number NE/N018508/1). SPH was supported from the Natural Environment Research Council (NERC), grant number NE/N018508/1.",True,False,False acknowledgement,10.1101/2024.03.08.24303979,doi10.1101/2024.03.08.24303979,"Funding Statement: This study was funded by the Swedish Research Council (2012-01981, 2017-00932), the Swedish Cancer foundation (5321-9416) and the joint grant from Stockholm County Council and Karolinska Institutet (ALF).",True,False,False acknowledgement,10.48550/arxiv.2002.09404,doi10.48550/arxiv.2002.09404,Acknowledgements. Financial support is provided by the US NSF (Grant CBET 1803730) and the DFG grant KR 4445/2 - 1. Computer time is provided by the Computing Center of the Technische Universität Ilmenau and Super MUC at the LRZ Center.,True,False,False acknowledgement,10.48550/arxiv.2303.02051,doi10.48550/arxiv.2303.02051,M.H. was partially supported by the Collaborative Research Center SFB 1085 Higher Invariants funded by the DFG. R.I. was supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No. 101001474).,True,False,False acknowledgement,10.48550/arxiv.2106.07453,doi10.48550/arxiv.2106.07453,This work was supported in part by The National Key Research and Development Program of China under grant 2020AAA0106000.,True,False,False acknowledgement,10.21203/rs.3.rs-665364/v1,doi10.21203/rs.3.rs-665364/v1,"This work was supported by National Natural Science Foundation of China (grant No. 81974292 to X.Y.S),Key Program of Shanghai Committee of Science and Technology (grant No. 18411951200 to X.Y.S).",True,False,False acknowledgement,10.48550/arxiv.1902.01305,doi10.48550/arxiv.1902.01305,"Acknowledgements: The first author is supported by FWO-Vlaanderen, via the postdoctoral grant 12T0519N. The last two authors are partially supported by the Spanish Ministry of Economy, Industry and Competitiveness under the project MTM2016-77642-C2-1-P.",True,False,False acknowledgement,10.48550/arxiv.2012.09216,doi10.48550/arxiv.2012.09216,"We thank the anonymous reviewers for their feedback, Yu Hou and Nuan Wen for their quality assessment annotations. This work is supported by a National Institutes of Health (NIH) R01 grant (LM012592). The views and conclusions of this paper are those of the authors and do not reflect the official policy or position of NIH.",True,False,False acknowledgement,10.1101/2023.02.02.23285369,doi10.1101/2023.02.02.23285369,This was an approved study (I.D. 1618) by UK BioBank (http://ukbiobank.org). We acknowledge funding from Kidney Research UK (KRUk) for the Stoneygate Foundation Grant JFS_IN_003_20160914 | MLD was supported by the KRESCENT post-doctoral fellowship from the Kidney Foundation of Canada,True,True,False acknowledgement,10.21203/rs.3.rs-1246923/v1,doi10.21203/rs.3.rs-1246923/v1,This research was supported by by the Engineering and Physical Sciences Research Council (Grant number P/L01629X/1).,True,False,False acknowledgement,10.48550/arxiv.2201.00644,doi10.48550/arxiv.2201.00644,This research was supported by the Research Foundation - Flanders (FWO) [grant number 1SC2921N] and by the Flemish Government (AI Research Program).,True,False,False acknowledgement,10.48550/arxiv.1009.3217,doi10.48550/arxiv.1009.3217,"Acknowledgements Mar̂tin Milanič for the introduction The author to would this problem, like to thank and for Paul comments Medvedev on an and earlier version of this paper. This research was supported by DFG grant BO 3391/1-1.",True,False,False acknowledgement,10.48550/arxiv.2411.01603,doi10.48550/arxiv.2411.01603,"This work is supported by Beijing Institute of Technology under National Key Research and Development Program Grant No. 2022YFE0204400, and the National Natural Science Foundation of China under Grant No. 52302449, and by the Khalifa University under Award No. RC1-2018-KUCARS-8474000136, CIRA-2021-085, MBZIRC-8434000194, KU-BIT-Joint-Lab-8434000534.",True,False,False acknowledgement,10.1101/564435,doi10.1101/564435,"This work was supported by grants from the Brazilian agencies, Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) and Fundacação de Apoio à Pesquisa do Distrito Federal (FAP-DF-Brazil). This study was also partially financed by scholarships from Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES-Brazil, Finance code 001). We are grateful for the valuable help of several people along the development of this work including Barbara Smith, Thales D. Arantes, Raquel Theodoro, Marluce F. Hrycyk, Carlos Eduardo Winter, Jessica Ferrão, Gabriela Matos, Cristine Barreto, Izabella Monteiro Rizzi de Azevedo, Bianca Oliveira do Vale Lira, Calliandra de Souza and Jhones Dias.",True,False,False acknowledgement,10.22541/essoar.168332204.40759533/v1,doi10.22541/essoar.168332204.40759533/v1,"We thank G. Rose, M. Kotkamp, M. Brewer, and J. Robinson for their efforts to maintain and calibrate the WVMS instruments at Mauna Loa, Table Mountain, and Lauder. This work was supported by the NASA Earth Sciences Division Upper Atmosphere Research Program and by the Office of Naval Research. Work at the Jet Propulsion Laboratory, California Institute of Technology, was carried out under a contract with the National Aeronautics and Space Administration. We thank M. Heney for making the daily GMA:GEOS5 temperature data at each site available in a convenient form.",True,True,False acknowledgement,10.1101/2021.02.23.21252011,doi10.1101/2021.02.23.21252011,"This work was supported by a Wellcome Trust Investigator Award (096646/Z/11/Z), a Wellcome Trust Strategic Award (104943/Z/14/Z), and an EPSRC equipment grant (EP/M029778/1) to DKJ, a Sir Henry Wellcome Fellowship (215944/Z/19/Z) and VENI grant (17331) from the Dutch Research Council (NWO) to CMWT, a Wellcome Trust GW4-CAT Fellowship (220537/Z/20/Z) to DS, and a NIH NICDH fellowship (1F32HD103313-01) to EPR. This study is also supported by the Brain Repair and Intracranial Neurotherapeutics (BRAIN) Unit, funded by Health and Care Research Wales awarded to WPG. The authors thank Prof. Maxime Descoteaux and Jean-Christophe Houde (Sherbrooke Connectivity Imaging Lab) for their useful discussions and code sharing, and thank Adam Cunningham, Joanne Doherty and Marianne van den Bree (Cardiff University) for recruiting the CNV patients.",True,False,False acknowledgement,10.21203/rs.3.rs-3871553/v1,doi10.21203/rs.3.rs-3871553/v1,"This study was funded by Research grant #202102 of the Forestry and Forest Products Research Institute and by MAFF Commissioned project study on ""Development of a stable supply system for domestic lumber by utilizing large-diameter logs"" Grant Number JPJ012040. This work also was financially supported by JST SPRING, Grant Number JPMJSP2125.The author (Jiang) would like to take this opportunity to thank the ""Interdisciplinary Frontier Next-Generation Researcher Program of the Tokai Higher Education and Research System.""",True,False,False acknowledgement,10.21203/rs.3.rs-28073/v1,doi10.21203/rs.3.rs-28073/v1,"This work was supported by the National Natural Science Foundation of China (81703149), National Natural Sciences Foundation of Hunan province (NO. 2019JJ30041) and Innovation-Driven Project of Central South University (NO.2020CX044).",True,False,False acknowledgement,10.48550/arxiv.1901.08942,doi10.48550/arxiv.1901.08942,"This project was supported in part by the National Center for Advancing Translational Sciences, National Institutes of Health through the grant UL1 TR000127 and TR002014, by the National Science Foundation, through the grants 1518732, 1640834, and 1636795, the Pennsylvania State Universitys Institute for Cyberscience and the Center for Big Data Analytics and Discovery Informatics, the Edward Frymoyer Endowed Professorship in Information Sciences and Technology at Pennsylvania State University and the Sudha Murty Distinguished Visiting Chair in Neurocomputing and Data Science funded by the Pratiksha Trust at the Indian Institute of Science [both held by Vasant Honavar]. The content is solely the responsibility of the authors and does not necessarily represent the official views of the sponsors.",True,True,False acknowledgement,10.48550/arxiv.1210.0109,doi10.48550/arxiv.1210.0109,William Ott is partially supported by NSF postdoctoral fellowship DMS 0603509. | Mikko Stenlund is partially supported by a fellowship from the Academy of Finland. | Lai-Sang Young is partially supported by NSF grant DMS 0600974.,True,False,False acknowledgement,10.1101/2023.07.06.547944,doi10.1101/2023.07.06.547944,"We thank Joshua I. Gray and Rory E. Morrison-Colvin for helpful discussions and members of the Farber laboratory for help with tissue processing. This work was supported by a Seed Networks for the Human Cell Atlas grant from the Chan Zuckerberg Initiative (CZF2019-002452) and NIH grants AI128949 and AI106697 awarded to P.A.Si. and D.L.F. D.P.C. was supported by the Columbia University Graduate Training Program in Microbiology and Immunology (T32AI106711). P.A.Sz. was supported by a Canadian Institutes of Health Research (CIHR) Fellowship. Research reported here was performed in the Columbia Stem Cell Initiative Flow | Cytometry Core, the Sulzberger Columbia Genome Center, and the Columbia Single Cell Analysis Core (supported by grant P30CA013696).",True,False,False acknowledgement,10.48550/arxiv.2108.06371,doi10.48550/arxiv.2108.06371,"This work was supported by NSF CAREER awards 1942124 and 2046640, NSF grant CIF-1763734, NSF grants IIS-1850477 and IIS-1814056, and a Google Research Scholar Award.",True,False,False acknowledgement,10.48550/arxiv.2001.06563,doi10.48550/arxiv.2001.06563,"The present work was supported by the U.S National Science Foundation (dmr-prem 1523463). Also, the research of AN is supported by the Israel-U.S Binational Science Foundation, the German Research Foundation (DFG TH 820/11-1), the U.S National Science foundation (Grant No.CHE1665291) and the University of Pennsylvania. NZ acknowledges support of the Sackler Visiting Professor Chair at Tel Aviv University, Israel.",True,False,False acknowledgement,10.48550/arxiv.2309.10312,doi10.48550/arxiv.2309.10312,"We thank William Saunders and Henk Tillman for helpful discussion of the evaluation framework. This research is supported in part by grants from Open Philanthropy, Meta, Amazon, and the Stanford Institute for Human-Centered Artificial Intelligence (HAI).",True,False,False acknowledgement,10.48550/arxiv.1404.7799,doi10.48550/arxiv.1404.7799,"We would like to thank Shahid Raza, Hossein Shafagh and Simon Duquennoy for releasing the implementation of Lithe in open sourced form. Many thanks to Michel Courbon for performing tests on real WiSMote nodes and to Michel Favre for suggestions on porting the Energest benchmarking tool to ST GreenNet platform. The work of F. Rousseau and A. Duda was partially supported by the French National Research Agency (ANR) project project IRIS under contract ANR-11-INFR-016 and the European Commission FP7 project CALIPSO under contract 288879. The work reflects only the authors views; the European Community is not liable for any use that may be made of the information contained herein.",True,False,False acknowledgement,10.48550/arxiv.1310.1034,doi10.48550/arxiv.1310.1034,This research was funded by the ERC grant no. 239784 and AoF grant no. 251170.,True,False,False acknowledgement,10.48550/arxiv.2501.04784,doi10.48550/arxiv.2501.04784,"This work was performed under the auspices of the U.S. Department of Energy by the Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, Lawrence Livermore National Security, LLC. This work is supported by LDRD projects 22-ERD-006 and 24-FS-002. LLNL-CONF-870596.",True,False,False acknowledgement,10.48550/arxiv.1801.09188,doi10.48550/arxiv.1801.09188,"Acknowledgements. This work was supported by National Natural Science Foundation of China (Grant Nos. 11301165, 11371126, 11571099). The authors wish to thank Prof. Jiang Yueping for his support and encouragement of this work.",True,False,False acknowledgement,10.21203/rs.3.rs-1450408/v1,doi10.21203/rs.3.rs-1450408/v1,Helen Pearson is supported by National Institute Health Research (NIHR) Clinical Doctoral Research Fellowship NIHR300548. | This research was supported in part by the NIHR Great Ormond Street Hospital Biomedical Research Centre.,True,False,False acknowledgement,10.48550/arxiv.2206.04694,doi10.48550/arxiv.2206.04694,Acknowledgements: This work was supported by the projects GAČR 21-26574S and GAUK-327422. J.T. is supported by the DOE grant No. DE-SC0009999 and by the funds of University of California.,True,False,False acknowledgement,10.48550/arxiv.1811.07008,doi10.48550/arxiv.1811.07008,"This work was supported by the DOE Advanced Projects Research Agency (ARPA) ALPHA program project DE-AR0000564. The authors wish to acknowledge the support and encouragement of ARPA program managers Dr. Patrick McGrath and Dr. Scott Hsu. We would like to particularly acknowledge undergraduate student contributions from Katie Gelber, Nick Anderson, Hari Srinivasulu, Emma Suen-Lewis, Luke Barbano, and Jaron Shrock, and technical discussions with colleagues David Schaffner, Adam Light, and Simon Woodruff. Technical support from Steve Palmer and Paul Jacobs at Swarthmore for SSX is also gratefully acknowledged.",True,False,True acknowledgement,10.48550/arxiv.2208.11974,doi10.48550/arxiv.2208.11974,"This work was supported in part by the Czech Science Foundation grant no. 19-28375X, by the EU FET Open RIA grant no. 766566, by the INTER-COST grant no. LTC20026, and by the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No 861300 (COMRAD). We also acknowledge CzechNanoLab project LM2018110 funded by MEYS CR for the financial support of the measurements at LNSM Research Infrastructure and the COST Action CA17123 MAGNETOFON for the support of the international collaboration.",True,False,False acknowledgement,10.1101/2020.08.06.239418,doi10.1101/2020.08.06.239418,"The Kops and Vermeulen labs are part of the Oncode Institute, which is partly funded by the Dutch Cancer Society. This study was further funded by the Cancer Genomics Center (CGC.nl), the Wellcome Trust (100210/Z/12/Z) to NR, Sigrid Jusélius Foundation (MF), Jane and Aatos Erkko Foundation (MF), Academy of Finland grant 1308657 (MF), and a Postdoctoral Research Fellowship by the Herchel Smith Fund at the University of Cambridge (ET).",True,False,False acknowledgement,10.21203/rs.3.rs-3252299/v1,doi10.21203/rs.3.rs-3252299/v1,"Acknowledgements: J. L. acknowledges the support from MOE Tier 2 grants (MOE2019-T2-2-044 and MOE-T2EP10221-0005). This work is also supported by the Ministry of Education, Singapore, under its Research Centre of Excellence award to the Institute for Functional Intelligent Materials (I-FIM, project No. EDUNC-33-18-279-V12). K. S. N. is grateful to the Royal Society (UK, grant number RSRP\R\190000) for support. M. K. acknowledges support from the Russian Science Foundation (grant #21-79-20225) and Vladimir Potanin (through Brain and Consciousness Research Center).",True,False,False acknowledgement,10.1101/2021.11.01.466835,doi10.1101/2021.11.01.466835,"This work was supported by grants from the NIH (R01 NS109295) and the Michael J. Fox Foundation to R.H.E. We thank Todd Logan for developing the use of FFNs in chromaffin cells and members of the Edwards lab for helpful discussion and suggestions. We thank Wade Regehr for sending the synaptotagmin 7 knockout mice. We thank DeLaine Larson, Kari Herrington and SoYeon Kim at the UCSF Center for Advanced Light Microscopy for technical assistance and advice. The algorithm for Dual-View calibration was generously provided by Damien Jullié.",True,False,False acknowledgement,10.21203/rs.3.rs-753663/v1,doi10.21203/rs.3.rs-753663/v1,"This work was funded by the National Cancer Research Institute, grant identifier LCSuPaC 30. Staff at the CRCTU who contributed to the trial were supported by a core funding grant (C22436/A25354).",True,False,False acknowledgement,10.21203/rs.3.rs-190112/v1,doi10.21203/rs.3.rs-190112/v1,"This work was supported by the Else Kröner-Fresenius Stiftung (RL:2011-119), Deutsche Forschungsgemeinschaft (AF:DFG-Exc-257; SFB 1315, Project #327654276), Bundesministerium für Bildung und Forschung (AF and MM:01EO0801).",True,False,False acknowledgement,10.48550/arxiv.2112.05479,doi10.48550/arxiv.2112.05479,"T. Kulczycki was supported by the National Science Centre, Poland, grant no. 2019/33/B/ST1/02494.",True,False,False acknowledgement,10.21203/rs.3.rs-2701883/v1,doi10.21203/rs.3.rs-2701883/v1,"The work was supported by R00 DK090210, R01 DK109015, University of Chicago DRTC (DK020595) Pilot & Feasibility award, Center for Society for Clinical and Translational Research Early Career Development Award and UIC Startup fund to CWL. Also supported by R01 DK123098, and P30 DK020595 NIH grant to PX. The authors wish to thank the Laboratory of Animal Center of The University of Illinois at Chicago for invaluable help in mouse colony maintenance.",True,True,False acknowledgement,10.48550/arxiv.1710.05055,doi10.48550/arxiv.1710.05055,"Acknowledgements: RTWM and AK acknowledge support from the National Research Foundation of South Africa, NRF CPRR grant number 90551. AK acknowledges support through the Discovery Programme of the National Science and Engineering Research Council of Canada (NSERC).",True,False,False acknowledgement,10.1101/2023.05.08.539485,doi10.1101/2023.05.08.539485,"The Seattle Alzheimer's Disease Brain Cell Atlas (SEA-AD) consortium is supported by the National Institutes on Aging (NIA) grant U19AG060909. Study data were generated from postmortem brain tissue obtained from the University of Washington BioRepository and Integrated Neuropathology (BRaIN) laboratory and Precision Neuropathology Core, which is supported by the NIH grants for the UW Alzheimer's Disease Research Center (NIA grants: P50AG005136 and P30AG066509) and the Adult Changes in Thought Study (NIA grants: U01AG006781 and U19AG066567), and the Nancy and Buster Alvord Endowment (to C.D.K.). We thank AMP-AD, Sage Bionetworks and the Open Data Registry on AWS for hosting various datasets from this study.",True,True,False acknowledgement,10.48550/arxiv.2107.07060,doi10.48550/arxiv.2107.07060,This research was partly made possible by DP160103595 and LE180100158 grants from the Australian Research Council. The statements made herein are solely the responsibility of the authors.,True,False,False acknowledgement,10.21203/rs.3.rs-3866343/v1,doi10.21203/rs.3.rs-3866343/v1,Funding: The study 'Prävention und Gesundheitsförderung für pflegende Angehörige. Entwicklung und Evaluation eines diversitätssensiblen Online-Selbsthilfeangebots zur Stärkung des Selbstmanagements am Beispiel von Menschen mit türkischem Migrationshintergrund' (Diversity-On) is funded by the Federal Joint Committee (G-BA) (funding reference 01VSF22048).,True,False,False acknowledgement,10.48550/arxiv.2412.07807,doi10.48550/arxiv.2412.07807,The work of X.C. is supported in part by the Science and Technology Facilities Council (grants numbers ST/T00102X/1 and ST/T006048/1).,True,False,False acknowledgement,10.1101/2022.10.25.513641,doi10.1101/2022.10.25.513641,"Funding for this work was provided by the Audacious Project at the Institute for Protein Design (N.P.K. and D.B.), The Open Philanthropy Project for Improving Protein Design Fund (D.B.), NSF DGE-1762114 (E.C.Y.), the Bill & Melinda Gates Foundation grant #INV-010680 (N.P.K. and D.B.), a Rosetta Commons Post-Baccalaureate Fellowship (J.S.), National Science Foundation grant CHE-1629214 (N.P.K. and D.B.), and the Howard Hughes Medical Institute (D.B.).",True,False,False acknowledgement,10.48550/arxiv.1902.10432,doi10.48550/arxiv.1902.10432,Financial support by the German Research Foundation DFG under the grant VA205/17-1 is gratefully acknowledged.,True,False,False acknowledgement,10.2139/ssrn.4825199,doi10.2139/ssrn.4825199,"This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement N° 773782. The authors wish to express their thanks to the Charente basin stakeholders that were taking part into the project and the Adour Garonne water agency. The authors would like to wish to express their thanks to Météo-France for the gracious provision of climatic data, and Léonard Santos and Alexandre Pryet for their contribution to the model calibration and validation.",True,False,False acknowledgement,10.48550/arxiv.1905.04087,doi10.48550/arxiv.1905.04087,The author was supported by Programa Internacional de Doctorado de la Fundación La Caixa-Severo Ochoa 2016 and partially suported by grant MTM2015-65825-P. .,True,False,False acknowledgement,10.21203/rs.3.rs-3040813/v1,doi10.21203/rs.3.rs-3040813/v1,Miguel Lagos-Zúñiga has been supported by the Chilean ANID Doctoral grant N° 21192178. Pablo A. Mendoza received support from Fondecyt Project 11200142. Miguel Lagos-Zúñiga and Pablo A. Mendoza acknowledge CONICYT/PIA Project AFB220002. Miguel Lagos-Zúñiga and Roberto Rondanelli received support from FONDAP/ANID Project 1522A0001.,True,False,False acknowledgement,10.21203/rs.2.21615/v2,doi10.21203/rs.2.21615/v2,"This study was financially supported by a grant from National High Technology Research and Development Program of China (863 Program) (No.2013AA102805-04), the Key Laboratory of Water Pollution Control and Environmental Safety of Zhejiang Province (No. 2018ZJSHKF06), the Key Project of Jingzhou Science and Technology (No. 2019EC61-15), China Postdoctoral Science Foundation funded project (No. 2016M591832), the Natural Science Foundation of Jiangsu Province (No. BK20150165) and the Science and Technology Program of Administration of Quality and Technology Supervision of Jiangsu Province (No. KJ15ZB01).",True,False,False acknowledgement,10.48550/arxiv.2307.00038,doi10.48550/arxiv.2307.00038,"This research is supported by the National Research Foundation, Singapore under its AI Singapore Programme (AISG Award No: AISG2-RP-2021-025), its NRFF award NRF-NRFF15-2023-0001. We also acknowledge Mengmi Zhang's Startup Grant from Agency for Science, Technology, and Research (A*STAR), and Early Career Investigatorship from Center for Frontier AI Research (CFAR), A*STAR.",True,False,False acknowledgement,10.26434/chemrxiv.14717349.v1,doi10.26434/chemrxiv.14717349.v1,"This research was funded by National Key R&D Program of China (2018YFA0704002, 2018YFE0202300, 2017YFA0505400), National Natural Science Foundation of China (21735007, 21991080, 21921004), and CAS Key Research Program of Frontier Sciences (QYZDJ-SSW-SLH027).",True,False,False acknowledgement,10.2139/ssrn.4455719,doi10.2139/ssrn.4455719,The financial support provided by the COWI Foundation through the EMULF project is gratefully acknowledged by the authors.,True,False,False acknowledgement,10.21203/rs.3.rs-1644727/v1,doi10.21203/rs.3.rs-1644727/v1,"Funding information: This research received funding from the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, Information and Communication Technologies & Future Planning (2020R1A2C1003886) and a grant from the Korea Health Technology R&D Project through the Korea Health Industry Development Institute, funded by the Ministry of Health & Welfare, Republic of Korea (HI21C1161).",True,False,False acknowledgement,10.48550/arxiv.1111.0403,doi10.48550/arxiv.1111.0403,aPartially supported by the Israel Science Foundation grant 701/08. bPartially supported by the Israel Science Foundation grant 509/07.,True,False,False acknowledgement,10.31223/x5492h,doi10.31223/x5492h,This work was partially funded by the Emmy Noether program (HA7019/1-1) of the German Research Foundation (DFG).,True,False,False acknowledgement,10.48550/arxiv.2403.05728,doi10.48550/arxiv.2403.05728,This work is indebted to the volunteer developers producing FLOSS who have made their work available for inspection. We also gratefully acknowledge support from the Sloan Foundation through the Ford/Sloan Digital Infrastructure Initiative (Sloan Award 2018-113560 and the National Science Foundation (Grant IIS-2045055). This work was conducted using research computing resources at Northwestern University.,True,False,False acknowledgement,10.48550/arxiv.2004.05904,doi10.48550/arxiv.2004.05904,"This work received institutional support from the Korea Institute of Science and Technology Information. This work was also supported by the National Research Foundation (NRF) of Korea funded by the Korean Government (Grant No. NRF-2017R1E1A1A03070975 (J.Y., S.A.)). The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.",True,False,False acknowledgement,10.21203/rs.2.24005/v2,doi10.21203/rs.2.24005/v2,"Funding This work was supported by research grants from the National Natural Science Foundation of China (81601214,). The funders played no role in the design of this study, the collection, analysis and interpretation of data or preparation of the manuscript.",True,True,False acknowledgement,10.1101/594408,doi10.1101/594408,"We thank Abdel Belaidi for comments on the manuscript, Nicholas Stroustrup and Walter Fontana for providing their raw data to enable validation of our temporal scaling analysis and acknowledge the Australian Synchrotron. This study was supported by grants from the Australian Research Council to AIB and GM (DP130100357 and DP180101248), University of Melbourne Research Grant Support Scheme and Miller Foundation to GM, and the Victorian Government's Operational Infrastructure Support Program. We thank the Caenorhabditis Genetics Center (CGC) supported by the US National Institutes of Health - Office of Research Infrastructure Programs (P40 OD010440) for providing C. elegans strains.",True,True,False acknowledgement,10.48550/arxiv.2109.07962,doi10.48550/arxiv.2109.07962,Acknowledgement: Partly supported by the Deutsche Forschungsgemeinschaft (DFG) and a Gay-Lussac Humboldt prize.,True,False,False acknowledgement,10.48550/arxiv.1610.03645,doi10.48550/arxiv.1610.03645,"The authors wish to thank Professor John Pendry for fruitful discussions. This work was supported in part by Nanyang Technological University Start-up Grants, Singapore Ministry of Education (MOE) under Grant No RG72/15 and Grant No. MOE2015-T2-1-145, and in part by the National Science Foundation of China (61571117, 61171024, 61171026, 61138001), 111 Project (111-2-05), National Instrumentation Program (2013YQ200647), Scientific Research Foundation of Graduate School of Southeast University (YBJJ1436), and Program for Postgraduate Research Innovation in University of Jiangsu Province (3204004910). S.A.M. acknowledges the EPSRC (EP/L 204926/1), the Royal Society, and the Lee-Lucas Chair in Physics.",True,False,False acknowledgement,10.31223/osf.io/6gw27,doi10.31223/osf.io/6gw27,"This research was supported in part by NSF grants EAR-1537868, EAR-1645269, and EAR-1928395 at the University of Colorado at Boulder. The facilities of IRIS Data Services, and specifically the IRIS Data Management Center, were used for access to waveforms, related metadata and/or derived products used in this study. IRIS Data Services are funded through the Seismological Facilities for the Advancement of Geoscience and EarthScope (SAGE) Proposal of the National Science Foundation under Cooperative Agreement EAR-1261681. This work utilized the RMACC Summit supercomputer, which is supported by the National Science Foundation (awards ACI-1532235 and ACI-1532236), the University of Colorado Boulder, and Colorado State University. The Summit supercomputer is a joint effort of the University of Colorado Boulder and Colorado State University.",True,True,False acknowledgement,10.48550/arxiv.0912.2723,doi10.48550/arxiv.0912.2723,Both authors were partially supported by the bilateral (French-Spanish) collaboration PAI Picasso HF 2006-0220 . The second author was also partially supported by the research project MTM2007-67493 (Spain).,True,False,False acknowledgement,10.1101/233924,doi10.1101/233924,This work was supported by a NIH award R01GM121750 to D.R. Matute.,True,False,False acknowledgement,10.48550/arxiv.2404.06340,doi10.48550/arxiv.2404.06340,"This work was supported by the NSF CAREER Award 2145277, the DARPA YFA Grant D22AP00156-00, the NSF CPS Grant CNS-2121391, Qualcomm Research, Nokia, and NYU Wireless.",True,False,False acknowledgement,10.48550/arxiv.1907.06026,doi10.48550/arxiv.1907.06026,"The authors acknowledge the support of the Research Foundation Flanders (FWO) under Grant No G.0D86.16N, of the European Union for the ERC grant No 817762 - FHiCuNCAG and of the Russian Academic Excellence Project '5-100'.",True,False,False acknowledgement,10.1101/2021.11.07.467595,doi10.1101/2021.11.07.467595,"The authors would like to thank the staff of the Biological Resource units, the MRC Genotyping team, the Flow Cytometry and Imaging facilities from the University of Dundee, and the animal care staff and Servicios Científico Técnicos del CIBA (IACS-University of Zaragoza) and Servicio Apoyo Investigación (University of Zaragoza) for invaluable assistance. This work was supported by the Wellcome Trust and Royal Society (Sir Henry Dale Fellowship to MS, 206246/Z/17/Z) and, in part by a Wellcome Trust Senior Investigator award [106914/Z/15/Z] to JCDH, and by ARAID Foundation and grant SAF2017-83120-C2-1-R and PID2020-113963RBI00 from the Ministry of Science and Innovation/ Agencia Estatal de Investigacion and FEDER (Group B29_17R, Aragon Government) to JP. LS was supported by a PhD fellowship (FPI) from the Ministry of Science, Innovation and Universities. MA was supported by a post-doctoral fellowship ""Juan de la Cierva-formación"" and ""Juan de la Cierva-incorporación"" from the Ministry of Science, Innovation and Universities. For the purpose of open access, the authors have applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission.",True,False,False acknowledgement,10.21203/rs.2.12260/v1,doi10.21203/rs.2.12260/v1,"This study is supported financially by Physical Medicine and Rehabilitation research center of Tabriz University of Medical Sciences, Tabriz, Iran. The funding sources will not have any influence on the",True,False,False acknowledgement,10.48550/arxiv.2209.00141,doi10.48550/arxiv.2209.00141,Y.-K. Wang is supported by Taiwan NSTC grant 109-2628-M-006-001-MY3. We would like to thank professor Pengzi Miao and Divid Wiygul for their interest in the paper.,True,False,False acknowledgement,10.1101/2020.09.28.315218,doi10.1101/2020.09.28.315218,This work was supported by Department of Defense grant D16AP0002 to JD (PI).,True,False,False acknowledgement,10.21203/rs.3.rs-2075157/v1,doi10.21203/rs.3.rs-2075157/v1,"This work was supported by a grant from Japan Agency for Medical Research and Development (grant number 16lk0201052h) and the Tokyo University Research Fund. In addition, Yakult Honsha Co., Ltd. provided oxaliplatin, irinotecan, and leucovorin free of charge for this study. However, this study was independent from the sponsor and investigators have responsibility for study conception, design, data handling/analysis, subsequent publication.",True,True,False acknowledgement,10.1101/2020.12.11.421511,doi10.1101/2020.12.11.421511,This project was funded by Science Foundation Ireland (13/CDA/2145) and the European Research Council (ERC) under the European Union’s Horizon 2020 Research and Innovation programme (Grant Agreement No. 637674).,True,False,False acknowledgement,10.48550/arxiv.2212.00340,doi10.48550/arxiv.2212.00340,The research is supported in part by National Natural Science Foundation of China (Grant Nos. 12071118).,True,False,False acknowledgement,10.48550/arxiv.1705.00034,doi10.48550/arxiv.1705.00034,This work was supported in part by an NSF INSPIRE grant (award number IIS-1547880). The authors would like to thank Joshua Smith from California State - Fullerton University for being the chief point of contact between this study and the LIGO detector characterization working group and for being a resource on LIGO glitches and current methods of data analysis.,True,True,False acknowledgement,10.48550/arxiv.2502.16286,doi10.48550/arxiv.2502.16286,"This study was supported by the Strategic Priority Research Program of CAS (Award ID: XDA0320101), the Ministry of Education, Singapore under its Academic Research Fund Tier 2 (T2EP20222-0037), and the Ministry of Education, Singapore under its Academic Research Fund Tier 3 (MOET32020-0003). Any opinions, findings, conclusions, or recommendations expressed in this material are those of the author(s) and do not reflect the views of the Ministry of Education, Singapore.",True,False,False acknowledgement,10.48550/arxiv.2305.15140,doi10.48550/arxiv.2305.15140,"Lijie Chen is supported by a Miller Research Fellowship. Igor C. Oliveira received support from the EPSRC New Horizons Grant EP/V048201/1, the Royal Society University Research Fellowship URF\R1\191059, and the Centre for Discrete Mathematics and its Applications (DIMAP) at the University of Warwick. Hanlin Ren received support from DIMACS through grant number CCF- 1836666 from the National Science Foundation. This work was done in part while the authors were visiting the Simons Institute for the Theory of Computing.",True,False,False acknowledgement,10.21203/rs.3.rs-4135968/v1,doi10.21203/rs.3.rs-4135968/v1,"The research leading to this publication is a part of a project that has received funding from the ROCKWOOL Foundation, through the research project ""Excess deaths and life-years lost due to the Covid-19 pandemic in Denmark"". Research and publication of this paper were also supported by the AXA Research Fund, through the funding for the ""AXA Chair in Longevity Research"".",True,False,False acknowledgement,10.26434/chemrxiv-2025-1z9j7,doi10.26434/chemrxiv-2025-1z9j7,"This work was supported by the U.S. Department of Energy, Energy Efficiency & Renewable Energy (EERE) under Award No. DE-EE0010432.",True,False,False acknowledgement,10.1101/694604,doi10.1101/694604,This work was supported by an award from the Templeton Foundation to BYH and by an R01 from NIDA (DA038615).,True,False,False acknowledgement,10.48550/arxiv.2401.01666,doi10.48550/arxiv.2401.01666,"This work was supported in part by National Natural Science Foundation of China under Grant U20A20158, National Key R&D Program of China under Grant 2020YFB1807101, and Provincial Key R&D Program of Zhejiang under Grant 2023C01021. (Corresponding Author: Zhaoyang Zhang)",True,False,False acknowledgement,10.1101/2021.07.07.451532,doi10.1101/2021.07.07.451532,The authors acknowledge funding of this research by Canada Research Chairs program.,True,False,False acknowledgement,10.31234/osf.io/avnte,doi10.31234/osf.io/avnte,This work was supported by the National Science Foundation under Grant No. 1729856. The first author was partially funded by an NSF Graduate Research Fellowship.,True,False,False acknowledgement,10.48550/arxiv.2008.12920,doi10.48550/arxiv.2008.12920,"We gratefully acknowledge the support of DARPA under grant # HR0011835180, NSF under grants # IIS-1724341 and # IIS-1901379, and ONR under grant # N00014-18-1-2252. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the funding agencies.",True,False,False acknowledgement,10.21203/rs.3.rs-4107288/v1,doi10.21203/rs.3.rs-4107288/v1,This study was supported by the National Natural Science Foundation of China (52206167) and the Fundamental Research Funds for the Central Universities (No. 22120220582).,True,False,False acknowledgement,10.48550/arxiv.1601.08219,doi10.48550/arxiv.1601.08219,This work was supported by the ANR project MEMEMO2.,True,False,False acknowledgement,10.1101/2022.10.13.510969,doi10.1101/2022.10.13.510969,"The financial support from the Swedish Foundation for Strategic Research (SFF) (FFL15-0026), and the Knut and Alice Wallenberg Foundation (KAW 2016.0231, 2021.0186) is gratefully acknowledged.",True,False,False acknowledgement,10.31234/osf.io/b4ngx,doi10.31234/osf.io/b4ngx,"Acknowledgments: The study was supported by the Slovak Research and Development Agency as part of the research project APVV-20-0387: ""Psychological context of unfounded information and beliefs related to the COVID-19 pandemic"". Materials for the whole project are publicly available at: https://osf.io/7yuhj/and data for this study are available at: https://osf.io/25gns/?view_only=3b76637ab3244f0f8da64aa81a98ea9f. | Acknowledgments: The study was supported by the Slovak Research and Development Agency as part of the research project APVV-20-0387: ""Psychological context of unfounded information and beliefs related to the COVID-19 pandemic"".",True,True,False acknowledgement,10.1101/581975,doi10.1101/581975,"This work was supported by grants from the NSF (1264502) and NIGMS (GM106251) to KL and AJ, the Nesbitt Chair to AJ, and grants from NSF (1337760) and NCI (CA211839) to KL.",True,False,False acknowledgement,10.21203/rs.3.rs-22369/v4,doi10.21203/rs.3.rs-22369/v4,"This study was supported by grants (107-CCH-HCR-026) from Changhua Christian Hospital, Taiwan. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.",True,False,False acknowledgement,10.21203/rs.3.rs-1607168/v1,doi10.21203/rs.3.rs-1607168/v1,"This research was supported by the KKH Health Services Model of Care Transformation Fund (MoCTF) Grant (MoCTF/01/2020, MoCTF/02/2020 and MoCTF/03/2020) and the Lien Foundation Optimising Maternal and Child Health Programme Fund (Grant number not applicable). The funding body did not influence either the data collection and analysis or the writing and the decision to submit the manuscript. C.W.K. and J.K.Y.C. are supported by the National Medical Research Council, Ministry of Health, Singapore (NMRC/MOH-000596-00 and NMRC/CSA-SI-008-2016, respectively). K.M.G. is supported by the National Institute for Health Research (NIHR Senior Investigator (NF-SI-0515-10042), NIHR Southampton 1000DaysPlus Global Nutrition Research Group (17/63/154) and NIHR Southampton Biomedical Research Center (IS-BRC-1215-20004), British Heart Foundation (RG/15/17/3174) and the European Union (Erasmus+ Programme ImpENSA 598488-EPP-1-2018-1-DE-EPPKA2-CBHE-JP). T.S.C. is partially supported by the UK Medical Research Council (MC_UU_00006/2).",True,True,False acknowledgement,10.1101/2021.08.04.455016,doi10.1101/2021.08.04.455016,"This work was funded by NWO Start-Up Grant 740.018.007 to TZ, and MRL is supported by a Clarendon Fund-Nuffield Department of Medicine Prize Studentship.",True,False,False acknowledgement,10.48550/arxiv.2010.15360,doi10.48550/arxiv.2010.15360,"We thank the anonymous reviewers for their valuable comments. This work was supported by the National Natural Science Foundation of China (NSFC) via grant 61976072, 61632011 and 61772153. Wanxiang Che is the corresponding author.",True,False,False acknowledgement,10.1101/459065,doi10.1101/459065,"This work has been funded by U24OH009077 (Becich) from National Institute of Occupational Safety and Health (NIOSH) and R01MH094564 (Ganapathiraju) from National Institute of Mental Health (NIMH), of National Institutes of Health (NIH), USA. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIOSH or NIMH, NIH, USA.",True,False,False acknowledgement,10.48550/arxiv.2403.02391,doi10.48550/arxiv.2403.02391,"The authors acknowledge useful discussions with Itamar Aharony, Kristian Chung, Yasir Iqbal, Subhankar Khatua, Paul McClarty, Vincent Noculak, Jeffrey Rau, Johannes Reuther, Addison Richards, Rajiv Singh and Mike Zhitomirsky. We also thank Vincent Noculak for comments on an early version of the manuscript. AH acknowledges support from the NSERC of Canada CGS-D Scholarship. DLG acknowledges financial support from the DFG through the Hallwachs-Röntgen Postdoc Program of the Würzburg-Dresden Cluster of Excellence on Complexity and Topology in Quantum Matter – ct.qmat (EXC 2147, project-id 390858490) and through SFB 1143 (projectid 247310070). The work at the University of Waterloo was supported by the NSERC of Canada and the Canada Research Chair (Tier 1, M.J.P.G.) program. This research was enabled in part by computing resources provided by the Digital Research Alliance of Canada.",True,False,False acknowledgement,10.21203/rs.3.rs-299619/v1,doi10.21203/rs.3.rs-299619/v1,"This work was supported by the grants from National Key R&D Program (2017YFD0501905 and 2017YFD0501901), National Natural Science Foundation of China (No.3167246 and 31972573), National Support Program for Youth Top-notch Talents, and the Earmarked Fund for the Innovative Teams of Beijing Swine Industrialization Research Program, National transgenic major program (2009ZX08006-008B and 2008ZX08006-002, 2011ZX08006-002, 2013ZX08006-002).",True,False,True acknowledgement,10.22541/au.165633312.28431992/v1,doi10.22541/au.165633312.28431992/v1,This work was supported by the Scientific research Project Plan of Shanghai Municipal Health Commission (No.202140346) and the National Key Research and Development Program of China (No. 2016YFC0901505).,True,False,False acknowledgement,10.1101/2021.02.10.430576,doi10.1101/2021.02.10.430576,"This research was supported by the Dutch Cancer Society (KWF grant 10132 to M.C.W.), and by the Oncode institute.",True,False,False acknowledgement,10.1101/424499,doi10.1101/424499,"The work was supported by the Washington University McDonnell Center for Cellular and Molecular Neurobiology and by NIH grants R01 NS068409 and R01 DP1 DA035081 (T.E.H.), R01 MH067122 (P.H.T.), R24 NS086741 (T.E.H. and P.H.T.), NIH Training Grant T32HL110952 (M.C.W.H.), and R01NS079584 (M.W.).",True,False,False acknowledgement,10.48550/arxiv.2011.07766,doi10.48550/arxiv.2011.07766,"*All authors acknowledge support of STIC AmSud program (project 20-STIC-05), and P.E.P.E. and C.S. of FEEI-CONACYT-PROCIENCIA program. *Corresponding author",True,False,True acknowledgement,10.1101/2023.11.30.569335,doi10.1101/2023.11.30.569335,EMS and UadK acknowledge support by a Young Investigator Award from the Novo Nordisk Foundation (NNF16OC0020670) and PRO-MS: Danish National Mass Spectrometry Platform for Functional Proteomics (grant no. 5072-00007B).,True,False,False acknowledgement,10.48550/arxiv.2005.14172,doi10.48550/arxiv.2005.14172,"The authors acknowledge helpful discussions with Dr. Brett Chapman. This material is based upon work supported by the U.S. Department of Energy Office of Science, Office of Fusion Energy Sciences program under Award Numbers DE-FC02-05ER54814 and DE-SC0018266. | Part of this work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.",True,False,False acknowledgement,10.1101/2023.03.24.534059,doi10.1101/2023.03.24.534059,This work was supported by grant-in-aid for Scientific Research 15H05724 and 22H02941 to SO.,True,False,False acknowledgement,10.48550/arxiv.1712.06597,doi10.48550/arxiv.1712.06597,"We acknowledge helpful discussions with members of the DFG Research Unit 2239: ""New Physics at the LHC"" during meetings and workshops. Martin Bauer thanks Uli Haisch for helpful comments. During the final preparation Valentin Tenorth acknowledges financial support by the IMPRS-PTFS.",True,False,False acknowledgement,10.48550/arxiv.1811.02685,doi10.48550/arxiv.1811.02685,"*Weizmann Institute of Science, Israel. Work partially supported by ONR Award N00014-18-1-2364, the Israel Science Foundation grant #1086/18, and a Minerva Foundation grant. Email: robert.krauthgamer@weizmann.ac.il | †University of Washington, Seattle, WA. Work supported by NSF grants CCF-1616297 and CCF-1407779 and a Simons Investigator Award. Email: jrl@cs.washington.edu",True,False,False acknowledgement,10.1101/2020.04.02.022657,doi10.1101/2020.04.02.022657,"This work was supported by Beijing Advanced Innovation Center for Genomics (ICG) at Peking University. L.T. was supported by a School of Medicine Dean's Postdoctoral Fellowship and a Walter V. and Idun Berry Postdoctoral Fellowship from Stanford University. K.D. was supported by a grant from the Gatsby Foundation. The authors thank the Bauer Core Facility at Harvard University (Z. Niziolet, J. Nelson, and C. Reardon) for flow sorting and PCR machines, F. Alt, P. Wei, F. Gage, and S. Parylak for advice on nuclei isolation, and H. Li, X. Jin, Y. Chen, and L.",True,False,False acknowledgement,10.21203/rs.3.rs-3986795/v1,doi10.21203/rs.3.rs-3986795/v1,"This study was supported by the Natural Science Foundation of Shandong Province (grant no. ZR202111290609), the China Postdoctoral Science Foundation (grant no. 2023M732138), and the Science and Technology Project of Binzhou Medical University (grant no. BY2021KYQD33)",True,False,False acknowledgement,10.48550/arxiv.1811.10425,doi10.48550/arxiv.1811.10425,"Acknowledgements. We are grateful to the referee for helpful comments. D.W.K. was partly supported by NSERC and a University Research Chair at Guelph. M.N. was partly supported by a University of Guelph International Student Scholarship, AIMS, and Mitacs. R.P. was partly supported by NSERC. M.R is supported by a postdoctoral fellowship in the Department of Pure Mathematics at the University of Waterloo.",True,False,False acknowledgement,10.1101/2020.11.03.20225524,doi10.1101/2020.11.03.20225524,Acknowledgments: The Mass Spectrometry Shared Resource of the University of Colorado School of Medicine is supported in part by funds from the Colorado Cancer Center Support Grant (P30CA046934) by the National Cancer Institute.,True,False,False acknowledgement,10.1101/2024.04.03.587970,doi10.1101/2024.04.03.587970,This work was supported by UO1AA028710 (LMS); BTK was supported by T32 AA025606 (JDJ).,True,False,False acknowledgement,10.48550/arxiv.0801.1943,doi10.48550/arxiv.0801.1943,Acknowledgements. This research was conducted during the periods the second author was a graduate student at Princeton University and was employed by the Clay Mathematics Institute as a Liftoff Fellow. The second author was partially supported by a Graduate School Centennial Fellowship at Princeton University. The third author is partially supported by grant No.10631060 of the National Natural Science Foundation of China.,True,False,False acknowledgement,10.48550/arxiv.2407.04880,doi10.48550/arxiv.2407.04880,"Acknowledgements: We thank ICCN'24 reviewers for constructive feedback. This work was supported in part by funding from NSF Award SATC-1956393, NSA Awards H98230-20-1-0345 and H98230-22-1-0308, as well as a subcontract from Peraton Labs.",True,False,False acknowledgement,10.48550/arxiv.1711.02935,doi10.48550/arxiv.1711.02935,"This research was supported by the DFG Collaborative Research Center TRR 109, 'Discretization in Geometry and Dynamics'.",True,False,False acknowledgement,10.48550/arxiv.2303.02564,doi10.48550/arxiv.2303.02564,"*The current research was partly supported by NSFC (11771257), Shandong Provincial NSF (ZR2021MA004).",True,False,False acknowledgement,10.48550/arxiv.cond-mat/0311334,doi10.48550/arxiv.cond-mat/0311334,This work was supported by the US National Science Foundation under grant number DMR-0201530.,True,False,False acknowledgement,10.22541/au.168570184.41060508/v1,doi10.22541/au.168570184.41060508/v1,"The work presented in this paper is funded by Cyber Security R&D Division, Ministry of Electronics and Information Technology (MeitY), Government of India (AAA-22/2/2021-CSRD-MeitY)",True,False,False acknowledgement,10.21203/rs.3.rs-218340/v2,doi10.21203/rs.3.rs-218340/v2,"The National Natural Science Foundation of China (21978310 & 51773217), the Key Research and Development Program of Shandong Province (2019JZZY020217), Youth Innovation Promotion Association CAS (2017339), Ningbo Natural Science Foundation (2019A610026). | We are grateful for the financial support by the National Natural Science Foundation of China (21978310 & 51773217), the Key Research and Development Program of Shandong Province (2019JZZY020217), Youth Innovation Promotion Association CAS (2017339), Ningbo Natural Science Foundation (2019A610026).",True,False,False acknowledgement,10.48550/arxiv.1705.00938,doi10.48550/arxiv.1705.00938,"Acknowledgement: This work was supported in part by the Faculty of Medicine at LMU (FöFoLe), the Bavarian State Ministry of Education, Science and the Arts in the framework of the Centre Digitisation.Bavaria (ZD.B), the NVIDIA corporation and DAAD (German Academic Exchange Service). The authors would also like to thank Magdalini Paschali for proof reading and feedback.",True,False,False acknowledgement,10.1101/2022.01.12.474993,doi10.1101/2022.01.12.474993,This work was supported by the National Institute of Health (R35GM124896 to Y.C.).,True,False,False acknowledgement,10.48550/arxiv.2405.19109,doi10.48550/arxiv.2405.19109,"This work was supported by National Key Research and Development Program of China (2022YFC3303600), National Natural Science Foundation of China (62137002, 62293550, 62293553, 62293554, 61937001, 62250066, 62176209, 62176207, and 62192781), ""LENOVO-XJTU"" Intelligent Industry Joint Laboratory Project, Natural Science Basic Research Program of Shaanxi (2023-JC-YB-593), the Youth Innovation Team of Shaanxi Universities, XJTU Teaching Reform Research Project ""Acquisition Learning Based on Knowledge Forest"".",True,False,False acknowledgement,10.1101/2021.08.24.457567,doi10.1101/2021.08.24.457567,"Acknowledgement: This work was supported by the NIH awards R01-AI 143740 and R01-AI 146581 to JD, and by the Research Institute at the Nationwide Children's Hospital. We thank Salim I. Khakoo and C. Jayaprakash for discussions. RKG thanks John Brown, Darren Wethington, and Ali Snedden for help with simulations.",True,False,False acknowledgement,10.21203/rs.3.rs-2057658/v1,doi10.21203/rs.3.rs-2057658/v1,"PCBBB was supported by grants from FAPESP (2016/02978-6, and 2018/16748-8), the NGO ""The Tooth Fairy Project "" and CNPq for PhD's fellowship.",True,False,False acknowledgement,10.1101/2021.10.24.465605,doi10.1101/2021.10.24.465605,"Government Agency) - Finance Code 001, GMM was supported by a scholarship provided by CAPES-PrInt and ECG was funded by grants from CNPq (Brazilian Government Agency). We are thankful to João Luís Reis Cunha for his guidance on ploidy estimation.",True,False,False acknowledgement,10.31234/osf.io/c9sw4,doi10.31234/osf.io/c9sw4,Funding Information: This research was supported by a NARSAD Young Investigator Grant and a National Institute of Mental Health R21 grant (R21-MH112925) to Dr. Strauss.,True,False,False acknowledgement,10.21203/rs.3.rs-3336764/v1,doi10.21203/rs.3.rs-3336764/v1,This work was jointly supported by National Key R&D Program of China (2020YFC1807703).,True,False,False acknowledgement,10.21203/rs.2.20578/v1,doi10.21203/rs.2.20578/v1,"This work is funded by the National Natural Science Foundation of China (grant ID 81703278), the Australian National Health and Medical Research Council Early Career Fellowship (grant ID APP1092621), the Sanming Project of Medicine in Shenzhen, China (grant ID SZSM201811071), and High Level Project of Medicine in Longhua, ShenZhen, China (HLPM201907020105). The funding sources played no part in study design, data collection and analysis, preparation of the manuscript or decision to publish.",True,True,False acknowledgement,10.31234/osf.io/c456b,doi10.31234/osf.io/c456b,"Acknowledgements We would like to thank the individuals with aphasia and the language unimpaired volunteers who participated in this study. We are grateful to Andreas Schmidt for helpful discussions of the work. We would also like to thank Silke Böttger, Sarah Düring and Therese Mayr for assisting with data collection. This research was supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – Project number 317633480 – SFB 1287, project B02 (PIs: Shravan Vasishth, Frank Burchert, and Nicole Stadie).",True,True,False acknowledgement,10.1101/628032,doi10.1101/628032,"We thank current and former members of Cramer Laboratory, including C. Bernecky, C. Burzinski, S. Dodonova, H. Hillen, S. Vos and F. Fischer. GK was supported by a Boehringer-Ingelheim PhD Fellowship. GK and AC have been doctoral students of the Ph.D. program ""Molecular Biology"" – International Max Planck Research School and the Göttingen Graduate School for Neurosciences, Biophysics, and Molecular Biosciences (GGNB) (DFG grant GSC 226) at the Georg August University Göttingen. PC was supported by the Deutsche Forschungsgemeinschaft (SFB860, SPP1935), the European Research Council Advanced Investigator Grant TRANSREGULON (grant agreement No 693023), and the Volkswagen Foundation.",True,False,False acknowledgement,10.1101/533562,doi10.1101/533562,"Acknowledgments This work was funded by the China Agriculture Research System (CARS-02-25), National Natural Science Foundation of China (31601598), National Natural Science Foundation of Hebei (C2018204059) and Science and technology research project of Hebei (ZD2014053).",True,False,False acknowledgement,10.21203/rs.3.rs-144531/v1,doi10.21203/rs.3.rs-144531/v1,This article was supported by a grant from the Shinshu Public Utility Foundation for Promotion of Medical Sciences.,True,False,False acknowledgement,10.21203/rs.2.19472/v2,doi10.21203/rs.2.19472/v2,Work on this project was supported by grant # 5R25TW010026-02 from the Fogarty International Center of the U.S. National Institutes of Health on behalf of the Research Ethics Program in Jordan. | The funding source encourages development of research ethics projects in Jordan. A full report has been sent to Research Ethics Program in Jordan for record purposes and permission for publication has been granted. | The authors would like to thank the funding source and all faculty members who participated in the study.,True,False,False acknowledgement,10.21203/rs.2.12006/v2,doi10.21203/rs.2.12006/v2,"This work was supported by the National Natural Science Foundation of China (81570084 and 81270144). The funders had no role in study design, data collection and analysis, or preparation of the manuscript.",True,False,False acknowledgement,10.21203/rs.3.rs-79411/v1,doi10.21203/rs.3.rs-79411/v1,"This study is supported by Shanghai Education Commission Research and Innovation Program (2019-01- 07-00-02-E00037), National Key Research and Development Program of China (2018YFE0126700), Program of Shanghai Subject Chief Scientist (17XD1401700), ""111"" Program of Higher Education Discipline Innovation, and Shanghai Jiao Tong University Scientific and Technological Innovation Funds.",True,False,True acknowledgement,10.48550/arxiv.2111.04875,doi10.48550/arxiv.2111.04875,We are funded by the Electronic Components and Systems for European Leadership (ECSEL) Joint Undertaking grant No 826655 receiving support from the European Union's Horizon 2020 research and innovation programme. Further partial funding is provided by the German Federal Ministry of Education and Research.,True,False,False acknowledgement,10.21203/rs.2.21433/v3,doi10.21203/rs.2.21433/v3,"The current study was supported by grant from the National Natural Science Foundation of China (81573206), Yunnan Applied Basic Research Projects (2016FA034), The PUMC Youth Fund (3332019111), Special Funds for High-level Healthy Talents of Yunnan Province (D-201669 and L-201615), CAMS Innovation Fund for Medical Sciences (2016-I2M-2-001), Yunnan Provincial Science and Technology Department (2019HC0060), Association Foundation Program of Yunnan Provincial Science and Technology Department and Kunming Medical University (2017FR467-077 and 2017FE467-012). The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.",True,False,False acknowledgement,10.1101/2024.02.20.581129,doi10.1101/2024.02.20.581129,"This research was funded by the Wellcome Trust Institutional Strategic Support Fund (ADM) and the Medical Research Council UK Career Development Award Fellowship MR/T03095X/1 (TG). For the purpose of open access, the authors have applied a Creative Commons Attribution (CC BY) license to any Author Accepted Manuscript version arising.",True,False,False acknowledgement,10.21203/rs.3.rs-21776/v2,doi10.21203/rs.3.rs-21776/v2,"This study was financed by a doctoral grant from the Italian Ministry of Education, University and Research (Programma Operativo Nazionale Ricerca e Innovazione 2014-2020 - CCI 2014IT16M2OP005 - Fondo Sociale Europeo, Azione I.1 ""Dottorati Innovativi con caratterizzazione Industriale). The funding institution financed laboratory analysis, the dietary treatments, and FDS. The funding institution had no role in the design of the study; in the collection, analysis, and interpretation of data; or in the writing of the manuscript.",True,False,False acknowledgement,10.1101/2020.05.18.101576,doi10.1101/2020.05.18.101576,"The authors thank D. Baker (LSHTM) for providing the PfPDEδ- line. The authors acknowledge the Flow Cytometry core facility CYBIO of the Institut Cochin for technical help. This study was supported by grants from Laboratory of Excellence GR-Ex, reference ANR-11-LABX-0051. The labex GR-Ex is funded by the IdEx program ""Investissements d'avenir"" of the French National Research Agency, reference ANR-18-IDEX-0001. CL, DB, FD, AM, MEN, GN, and LB acknowledge the financial support from the Cnrs, Inserm and the Fondation pour la Recherche Médicale (""Equipe FRM"" grant EQ20170336722).",True,False,False acknowledgement,10.1101/458315,doi10.1101/458315,"We thank Shivam Dave for help with seed counting, and Madison Zamora for assistance with field work. Miguel Flores provided valuable expertise and help with flow cytometry, and chromosomal squashes were only possible with the patient help of Michael Windham. We thank Yaniv Brandvain and Josh Puzey for access to the whole genome re-sequencing data for several accessions of M. guttatus. We are deeply grateful to members of the Willis and Matute lab, particularly Daniel Matute, who provided useful comments on this manuscript. We also thank those who provided insightful comments during the 2019 Gordon Speciation Conferences in Ventura, CA. This project was funded from NSF grants EF-0328636 and EF-0723814 to JHW, a DDIG (DEB- 1501758), ASN Student research award and SSE student research award to JMC. JMC was also funded through the Duke Graduate School via the Myra and William Waldo Boone fellowship, the Duke Biology Department, and NIGMS grant R01GM121750 to Daniel Matute. Duke BioCore provided support for MWB. The authors declare no conflict of interest.",True,True,False acknowledgement,10.48550/arxiv.1701.07800,doi10.48550/arxiv.1701.07800,"The first author is supported by NSF Grant DMS-1362425 and research funds from the Dean of the College of Arts & Sciences, the University of Alabama. The second author is supported by the Simons Foundation.",True,False,False acknowledgement,10.1101/277491,doi10.1101/277491,"The research leading to these results has received funding from the European Union Seventh Framework Programme (FP7/2007-2013) under grant agreement Nr. PRIMES_278568. This work was supported by the Spanish Ministerio de Economía y Competitividad, Plan Nacional BIO2012-39754 and the European Fund for Regional Development. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. This work has been supported by grant PIP1220110100850 awarded to MM, and by PICT-2010-2805 awarded to AT.",True,False,False acknowledgement,10.21203/rs.3.rs-3989824/v1,doi10.21203/rs.3.rs-3989824/v1,"Acknowledgments. This research is supported by University of Macau (MYRG2022- 00108-FST, MYRG-CRG2022-00010-ICMS), the Science and Technology Development Fund, Macau S.A.R (0036/2021/AGJ), the National Key Research Project (2022YFB3904104), and the Key Project from National Natural Science Foundation of China (42230406). | Funding. This research is supported by University of Macau (MYRG2022-00108-FST, MYRG-CRG2022-00010-ICMS), the Science and Technology Development Fund, Macau S.A.R (0036/2021/AGJ), the National Key Research Project (2022YFB3904104), and the Key Project from National Natural Science Foundation of China (42230406).",True,False,False acknowledgement,10.48550/arxiv.1709.04693,doi10.48550/arxiv.1709.04693,"This work has been supported by the Spanish Government (Ministerio de Economía y Competitividad) under grant TEC2016-80090-C2-1-R, and Universidad de Málaga.",True,False,False acknowledgement,10.48550/arxiv.2108.12225,doi10.48550/arxiv.2108.12225,"This project was supported by the Danish National Research Foundation through the Center of Excellence for Macroscopic Quantum States (bigQ, DNRF0142).",True,False,False acknowledgement,10.48550/arxiv.1705.04978,doi10.48550/arxiv.1705.04978,The first author thanks the CNPq for the financial support. The second and third authors are thankful to FAPEAM for the financial support.,True,False,False acknowledgement,10.21203/rs.3.rs-4513090/v1,doi10.21203/rs.3.rs-4513090/v1,"This study was supported by funding from the Key Project of the National Natural Science Foundation of China (U21A20390), Jilin Scientific and Technological Development Program (20230204075YY, 20240305034YY), and the Graduate Innovation Program of Jilin University (2024CX280).",True,False,False acknowledgement,10.48550/arxiv.1509.03790,doi10.48550/arxiv.1509.03790,"Goldman and Stantchev gratefully acknowledge support from National Science Foundation grants DMS-070781, DMS0405605 and DMS-0103889 as well as the Department of Mathematics at the University of Maryland. Goldman gratefully acknowledges support from the General Research Board at the University of Maryland during the Fall semester of 2005 . Tan was partially supported by the National University of Singapore academic research grant R-146-000186-112 We are grateful to the Institute of Mathematical Sciences at the National University of Singapore in 2010, Institut Henri Poincaré in Paris in 2012 and the Mathematical Sciences Research Institute in Berkeley, California in 2015 for their hospitality during the final stages of this work. Finally we thank the GEAR Research Network in the Mathematical Sciences funded by NSF grant DMS-1107367 for their financial support. Goldman and Tan also express their gratitude to the Mathematical Sciences Research Institute where much of this work was finally completed in Spring 2015.",True,False,False acknowledgement,10.48550/arxiv.1709.01592,doi10.48550/arxiv.1709.01592,Acknowledgments. The research of BF is supported by the Russian Science Foundation grant project 16-11-10316. MJ is partially supported by JSPS KAKENHI Grant Number JP16K05183. EM is partially supported by a grant from the Simons Foundation #353831.,True,False,False acknowledgement,10.48550/arxiv.2001.06852,doi10.48550/arxiv.2001.06852,"Acknowledgements. The authors acknowledge the Center for Nonlinear Analysis at Carnegie Mellon University (NSF PIRE Grant No. OISE-0967140) where part of this work was carried out. The work of the first author has been supported by the National Science Foundation under Grant No. DMS-1411646 of Irene Fonseca during the period at CMU, by Grant Nos. EP/R013527/1 and EP/R013527/2 ""Designer Microstructure via Optimal Transport Theory"" of David Bourne during the period at Heriot-Watt University. The research of the second author was partially funded by the National Science Foundation under Grant Nos. DMS-1412095 and DMS-1714098 during the period at CMU, by the research support programs of Charles University under Grant Nos. PRIMUS/19/SCI/01 and UNCE/SCI/023, and by the Czech Science Foundation (GAČR) under Grant No. GJ17-01694Y. The authors would also like to thank Giovanni Leoni for his helpful insights.",True,False,False acknowledgement,10.21203/rs.3.rs-1041773/v1,doi10.21203/rs.3.rs-1041773/v1,"This work was supported in part by JSPS KAKENHI (Grant Number 19K09803, 21K09495, 20K18222, 20K09601, and 20H03825).",True,False,False acknowledgement,10.1101/324194,doi10.1101/324194,Supported by NIH grants R01-CA31798 to T. A. S. and R01-GM56778 and GM122565 R01- to W. J. s and a research collaboration with the Waters Corporation (J.R.E.).,True,False,False acknowledgement,10.1101/2022.05.03.490561,doi10.1101/2022.05.03.490561,This project was supported by grants from the Shanghai Clinical Research Center for Infectious Diseases (TUBERCULOSIS) (19MC1910800 to W.S.).,True,False,False acknowledgement,10.48550/arxiv.0712.4127,doi10.48550/arxiv.0712.4127,Partially supported by RFBR (project 05-01-00230). The author gratefully acknowledges the support of the Pierre Deligne fund based on his 2004 Balzan prize in mathematics.,True,False,False acknowledgement,10.22541/au.168501837.78590263/v1,doi10.22541/au.168501837.78590263/v1,This work was supported by the Basic Public Welfare Research Program of Zhejiang Province under Grant LTGY23H170004.,True,False,False acknowledgement,10.48550/arxiv.2402.02108,doi10.48550/arxiv.2402.02108,"This work was supported by the National Natural Science Foundation of China (NSFC) under Grant 62072334, 62402490 and the Shenzhen Basic Research Foundation under Grant JCYJ20240813154920027.",True,False,False acknowledgement,10.48550/arxiv.1707.04879,doi10.48550/arxiv.1707.04879,Part of this work was supported by JSPS KAKENHI Grant Numbers JP17H06101 and JP 17K00237.,True,False,False acknowledgement,10.48550/arxiv.2108.01248,doi10.48550/arxiv.2108.01248,"*Supported in part by NNSFC (61876192, 11626236) and the Fundamental Research Funds for the Central Universities of South-Central University for Nationalities (CZY15017, KTZ20051, CZT20020).",True,False,False acknowledgement,10.48550/arxiv.2302.09228,doi10.48550/arxiv.2302.09228,This work is partly supported by R&D Program of DCI Technology and Application Joint Laboratory.,True,False,False acknowledgement,10.26434/chemrxiv-2024-vfq1n,doi10.26434/chemrxiv-2024-vfq1n,"This project received funding from the European Union’s Horizon 2020 research and innovation program under grant agreement no. 957189 (BIG-MAP). The authors acknowledge BATTERY2030PLUS, funded by the European Union’s Horizon 2020 research and innovation program under grant agreement no. 957213. This work contributes to the research performed at CELEST (Center for Electrochemical Energy Storage Ulm-Karlsruhe) and was co-funded by the German Research Foundation (DFG) under Project ID 390874152 (POLiS Cluster of Excellence). HSS acknowledges funding from DFG EXC 2089/1-390776260 (e-conversion). TV acknowledges funding from the Pioneer Center for Accelerating Materials Discovery (CAPEX), DNRF Grant P3. FFR, FL and GP acknowledge funding by the NCCR MARVEL, a National Centre of Competence in Research, funded by the Swiss National Science Foundation (grant number 205602). GP acknowledges funding by the Open Research Data Program of the ETH Board (project “PREMISE”: Open and Reproducible Materials Science Research). FL and GP acknowledge useful discussions and support by Valeria Granata in the setup of the Archiving tenant. MV acknowledges fruitful discussions with Jackson K. Flowers regarding the transformation of formulations in the ASAB tenant. LM and MV acknowledge effective discussions with Christian Wölke concerning the cycling data obtained from the pretests.",True,True,False acknowledgement,10.48550/arxiv.2010.04530,doi10.48550/arxiv.2010.04530,Guerra was partially supported by US-Israel Binational Grant (BSF) n. 2018141.,True,False,False acknowledgement,10.48550/arxiv.0802.2825,doi10.48550/arxiv.0802.2825,Supported by DFG grants Scho 302/7-2 and TO 200/2-1.,True,False,False acknowledgement,10.48550/arxiv.2207.08907,doi10.48550/arxiv.2207.08907,The project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 823731 CONMECH and Project O06-INV00025 Universidad Austral.,True,False,False acknowledgement,10.48550/arxiv.2001.06374,doi10.48550/arxiv.2001.06374,"† This work was partially supported by US DOE grant #DE-SC0011941 and used computer time provided by the Innovative and Novel Computational Impact on Theory and Experiment (INCITE) program. This research used resources of the Argonne Leadership Computing Facility, which is a DOE Office of Science User Facility supported under Contract DE-AC02-06CH11357.",True,False,False acknowledgement,10.48550/arxiv.2403.05043,doi10.48550/arxiv.2403.05043,"We thank the anonymous referees for helpful comments and suggestions. We thank B.M. Broderick, B.T. Draine, B.A. McGuire, and E.F. van Dishoeck for stimulating discussions. KJL and TTF are supported by the National Key R\&D Program of China under No. 2017YFA0402600, and the NSFC grants 11890692, 12133008, and 12221003, as well as CMS-CSST-2021-A04. XJY is supported in part by NSFC 12333005 and 12122302 and CMS-CSST-2021-A09.",True,False,False acknowledgement,10.21203/rs.3.rs-189752/v1,doi10.21203/rs.3.rs-189752/v1,"This study was financially supported by the Longshan Academic Talent Research Support Program of SWUST (No. 17LZX5), PhD Foundation of Southwest University of Science and Technology (No. 16zx7162, No. 18zx715901), and the National Key Research and Development Program of China (2017YFD0100905).",True,False,False acknowledgement,10.21203/rs.3.rs-4802645/v1,doi10.21203/rs.3.rs-4802645/v1,"Funding: This research is supported by the US National Institutes of Health, USA (NIDA R01DA028648) and the Canadian Institutes of Health Research, Canada (165855). Miriam Harris was supported by the International Collaborative Addiction Medicine Research Fellowship (NIDA R25-DA037756). Dr. Goldenberg was partially supported by NIH (R01DA028648) and a CIHR New Investigator Award. Drs. Shannon and Krusi were partially supported by NIH (R01DA028648).",True,False,False acknowledgement,10.1101/780361,doi10.1101/780361,This work was supported by GM069841 and HL077814 from NIH and HR15- 166¹ from OCAST awarded to L.I. Rothblum and funds from the University of Oklahoma. L.I.Rothblum is a member of the Stephenson Cancer Center.,True,False,False acknowledgement,10.21203/rs.3.rs-3048687/v1,doi10.21203/rs.3.rs-3048687/v1,"This study was supported by the China Medical University, Taichung, Taiwan, and Hualien Tzu Chi Hospital, Buddhist Tzu Chi Medical Foundation, Hualien 970, Taiwan. All the experiments were conducted at China Medical University Chih-Yang Huang's Laboratory Taichung group. | Thank you Kaohsiung Armed Forces General Hospital, Kaohsiung, Taiwan. Ministry of Science and Technology: 111-2314-B-303-008-MY3, China Medical University and Asia University Taiwan 106-ASIA-16.",True,False,False acknowledgement,10.48550/arxiv.1307.5036,doi10.48550/arxiv.1307.5036,Acknowledgements: The authors acknowledge financial support from DOE (grant DE-FG02-ER46526). Anand. P. S. Gaur thanks NSF fellowship (grant NSF-RII-1002410).,True,False,False acknowledgement,10.21203/rs.3.rs-3106384/v1,doi10.21203/rs.3.rs-3106384/v1,Funding: The article-processing charges (APCs) for the accepted open-access article is generously funded by Qatar National Library (QNL) for authors affiliated with Qatar-based non-profit institutions. The authors would like to thank QNL for the generous APC funding. | Acknowledgment: The publication of this article was funded by Qatar National Library (QNL).,True,False,False acknowledgement,10.48550/arxiv.2212.00887,doi10.48550/arxiv.2212.00887,"This work was funded by the National Technical Nuclear Forensics Center (NTNFC) within Countering Weapons of Mass Destruction (CWMD), formerly the Domestic Nuclear Detection Office (DNDO), of the Department of Homeland Security and conducted at Pacific Northwest National Laboratory. Pacific Northwest National Laboratory is operated by Battelle Memorial Institute for the United States Department of Energy under contract DE-AC05-76RL0-1830.",True,False,False acknowledgement,10.48550/arxiv.2302.13461,doi10.48550/arxiv.2302.13461,"The work of Hai Liu and Chengju Li was supported by the National Natural Science Foundation of China (12071138), Shanghai Natural Science Foundation (22ZR1419600), the open research fund of National Mobile Communications Research Laboratory of Southeast University (2022D05). The work of Haifeng Qian was supported by the Innovation Program of Shanghai Municipal Education Commission (2021-01-07-00-08-E00101), and ""Digital Silk Road"" Shanghai International Joint Lab of Trustworthy Intelligent Software (22510750100).",True,False,True acknowledgement,10.48550/arxiv.1401.0163,doi10.48550/arxiv.1401.0163,†Supported by Polish budget funds for science in 2013-2017 as a research project under the ‘Diamond Grant’ program. ‡The author receives financial support of Foundation for Polish Science. §Supported by grant no. N206 566740 of the National Science Centre. ¶Supported by the NSF–funded iPlant Collaborative (NSF grant #DBI-0735191). kSupported by Iuventus Plus grant (IP2011 058671) of the Polish Ministry of Science and Higher Education.,True,False,False acknowledgement,10.48550/arxiv.2402.12888,doi10.48550/arxiv.2402.12888,"This work was supported by National Science and Technology Council, Taiwan, under Grants NSTC-112-2634-F-A49-007- and MOST-110-2221-E-A49-065-MY3, National Center for High-performance Computing, Taiwan, and partially supported by the European Union under the Italian National Recovery and Resilience Plan (NRRP) of NextGenerationEU, partnership on ""Telecommunications of the Future"" (PE00000001 - program ""RESTART"").",True,False,False acknowledgement,10.1101/145722,doi10.1101/145722,"We greatly acknowledge the Austrian Science Fund (FWF) for supporting the first author with an Erwin Schrödinger fellowship (J-3808), the National Institutes of Health grants R01 GMH4368 and PO1 A1043376-02S1 and Ecosystems and Networks Integrated with Genes and Molecular Assemblies (http://enigma.lbl.gov), a Scientific Focus Area Program at Lawrence Berkeley Laboratory for the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research under contract number DE-AC02- 05CH11231.",True,False,False acknowledgement,10.48550/arxiv.1304.1036,doi10.48550/arxiv.1304.1036,Research is partially supported by NSF CAREER Grant DMS-0745185 and Arnold O. Beckman Research Award (UIUC Campus Research Board 13039) and Marie Curie FP7-PEOPLE-2012-IIF 327763. | Research is partially supported by OTKA grant 101536.,True,False,False acknowledgement,10.31234/osf.io/f7epj,doi10.31234/osf.io/f7epj,Funding for this project comes from the John Templeton Foundation Grant #61086 to Oyserman and Yan,True,False,False acknowledgement,10.48550/arxiv.1709.10234,doi10.48550/arxiv.1709.10234,"* This research was supported by Ministry of Culture, Sports and Tourism, Korea Creative Content Agency in the Culture Technology Research and Development Program 2017 and Basic Science Research Program of NRF (Korea) under grant No. 2015R1D1A1A01059643.",True,False,False acknowledgement,10.31223/x57w5f,doi10.31223/x57w5f,"This work was funded by the Deutsche Forschungsgemeinschaft (DFG) as part of the project ""BoDy – Boudinage Dynamics"" (UR 64/14-1). We would also like to thank Fernando O. Marques and one anonymous reviewer for their constructive feedback on the paper, as well as Djordje Grujic for his comments and editing.",True,False,False acknowledgement,10.21203/rs.3.rs-49230/v3,doi10.21203/rs.3.rs-49230/v3,The study was supported by the Universiti Sains Malaysia (USM) Research University Grant (1001/CIPPT/8012203).,True,False,False acknowledgement,10.48550/arxiv.2405.14634,doi10.48550/arxiv.2405.14634,"We would like to thank CAPES (Coordenação de Aperfeiçoamento de Pessoal de Nível Superior), CNPq (Conselho Nacional de Desenvolvimento Científico e tecnológico), and FAPEPI (Fundação de Amparo à Pesquisa do Estado do Piauí) for the financial support. We acknowledge the Dietrich Stauffer Computational Physics Lab., Teresina, Brazil, where all computer simulations were performed.",True,False,False acknowledgement,10.48550/arxiv.2112.13434,doi10.48550/arxiv.2112.13434,"O.B would like to acknowledge the European Union's Horizon 2020 - EU.1.3.2. - Nurturing excellence by means of cross-border and cross-sector mobility under the Marie Sklodowska-Curie individual fellowship MSCA-IF-2017, MetaBioMec, Grant agreement ID:796405. The authors would like to thank Mrs. Silvia Bassini for iconographic material. Hussein Rappel was supported by Wave 1 of The UKRI Strategic Priorities Fund under the EPSRC Grant EP/T001569/1 and EPSRC Grant EP/W006022/1, particularly the ""Digital twins for complex systems engineering"" theme within those grants and The Alan Turing Institute. Mark Girolami acknowledges support from the UK Engineering and Physical Sciences Research Council (grant nos. EP/T000414/1, EP/R018413/2, EP/P020720/2, EP/R034710/1, EP/R004889/1), as well as a Research Chair supported by the Royal Academy of Engineering and Lloyds Register Foundation.",True,True,False acknowledgement,10.26434/chemrxiv-2024-hrqq9,doi10.26434/chemrxiv-2024-hrqq9,"The work was funded through National Institutes of Health grant GM131710 to A.D.M. Jr. E.B.N. was supported by the NIH/NCI T32 Training Grant in Cancer Biology T32CA154274 to the University of Maryland, Baltimore. Computational support from the University of Maryland Computer-Aided Drug Design Center is appreciated. The authors acknowledge helpful discussions with Dr. Wenbo Yu.",True,False,False acknowledgement,10.1101/516914,doi10.1101/516914,"This work was supported in part by AI080626 and AI124458 (both LNS) from the National Institute of Allergy and Infectious Diseases, and by AT006860 from the National Center for Complementary and Integrative Health (to NBC and DAT).",True,False,False acknowledgement,10.1101/2021.06.21.449221,doi10.1101/2021.06.21.449221,"RMC's PhD studentship was funded by a Engineering and Physical Sciences Research Council (EPSRC) Training Grant (EP/L016354/1). MWvdK thanks BBSRC for funding (BBSRC David Phillips Fellowship, BB/M026280/1). This research made use of the Balena High Performance Computing (HPC) Service at the University of Bath, as well as the computational facilities of the Advanced Computing Research Centre of the University of Bristol. Further, this project used computing time on ARCHER, granted via the UK High-End Computing Consortium for Biomolecular Simulation, HECBioSim (http://hecbiosim.ac.uk), supported by EPSRC (grant no. EP/L000253/1).",True,True,False acknowledgement,10.48550/arxiv.2002.04027,doi10.48550/arxiv.2002.04027,This research was supported in part by two NIDCD grants (R01DC012048 and R01DC015521) and the Ohio Supercomputer Center.,True,False,False acknowledgement,10.1101/2022.08.17.504180,doi10.1101/2022.08.17.504180,"This work was supported by the Canadian Institutes of Health Research [MOP-142451, PJT- 168956 to J.D.]; the Natural Sciences and Engineering Council of Canada [RGPIN-2019- 05281 to J.D.]; Fonds de Recherche – Nature et Technologies (to S.C.); McGill Faculty of Medicine scholarships (to D.S.); and McGill studentships (to J.S.). Funding for open access charge: CIHR [MOP-142451].",True,False,False acknowledgement,10.1101/2022.10.03.510745,doi10.1101/2022.10.03.510745,"The authors thank the members of the Hirose and Asai laboratories for their valuable discussions. The computational analysis was partially performed on the NIG supercomputer at the ROIS National Institute of Genetics. This work was supported by JST CREST grant no. JPMJCR20E6 (to T.H.), AMED grant no. 21479280 (to T.H.), and JSPS KAKENHI grants nos. 26113002, 16H06279, 20H00448, 21H05276, and 22K19293 (to T.H.).",True,False,False acknowledgement,10.21203/rs.3.rs-3919526/v1,doi10.21203/rs.3.rs-3919526/v1,"This study was supported financially by the Fisheries Agency, Council of Agriculture [Grant number 103AS-11.3.1-FA-F1(2)].",True,False,False acknowledgement,10.1101/2023.06.19.545572,doi10.1101/2023.06.19.545572,We are grateful to the Save Our Seas Foundation and The People's Trust for Endangered Species who provided funding for this work. JH was supported by a Natural Environment Research Council CASE studentship through the ENVISION DTP (case partner: Royal Zoological Society of Scotland) and received additional grants from the Fisheries Society of the British Isles and the Genetics Society. Fieldwork in Seychelles was supported by the SOSF-D'Arros Research Centre. RB was funded by the Save Our Seas Foundation and the Marine Conservation Action Fund of the New England Aquarium. BRT acknowledges the generous support provided by the Save Our Seas Foundation and the Marine Conservation and Action Fund (MCAF) for field work and sample collection.,True,False,False acknowledgement,10.48550/arxiv.2102.03921,doi10.48550/arxiv.2102.03921,This research was funded by Russian Science Foundation (project 19-71-00146).,True,False,False acknowledgement,10.1101/821157,doi10.1101/821157,TK was supported by the Japan Society for the Promotion of Science Research Fellowships for Young Scientists. This research was supported by the Japan Society for the Promotion of Science [KAKENHI Grant Number 16J08310 and 19K15809 to TK].,True,False,False acknowledgement,10.1101/467225,doi10.1101/467225,"This project was supported by CRUK Cancer Immunology fund (Ref. 20193), ERC grants (ThSWITCH, grant number 260507; ThDEFINE, Project ID 646794), an EU FET-OPEN grant (MRG-GRAMMAR No 664918), and Wellcome Sanger core funding (No WT206194).",True,False,False acknowledgement,10.48550/arxiv.1905.07168,doi10.48550/arxiv.1905.07168,"While working on this paper, the author was supported by the NSF-AGEP Fellowship and the UC Dissertation Year Fellowship. The author would like to thank an anonymous referee, whose suggestions help to simplify and improve the initially-submitted version of this paper.",True,False,False acknowledgement,10.1101/2023.12.18.572099,doi10.1101/2023.12.18.572099,"Ben Ashby is supported by the Natural Environment Research Council (Grant No. NE/V003909/1). This research was generously supported by a Milner Scholarship PhD grant to Lydia Buckingham from The Evolution Education Trust. We acknowledge the support of the Natural Sciences and Engineering Research Council of Canada (NSERC). Nous remercions le Conseil de recherches en sciences naturelles et en génie du Canada (CRSNG) de son soutien. The Pacific Institute on Pathogens, Pandemics and Society receives funding from the BC Ministry of Health.",True,False,False acknowledgement,10.1101/2020.12.11.20247601,doi10.1101/2020.12.11.20247601,"The study has been supported in part by the following grants: i) ""ARISTOTLE"" program was implemented under National Strategic Reference Framework 2007-2013 (MIS 365008) and was cofunded by the European Social Fund, national resources and the Hellenic Scientific Society for the Study of AIDS and STDs, ii) ""TRIP"" program was supported by the United States National Institute on Drug Abuse (NIDA) (DP1 DA034989), iii) data from Luxembourg were collected in the context of studies supported by grants from the Ministry of Health of Luxembourg (HIV-MSAN) and iv) 2018 Asklepios Gilead Hellas Grants Programme.",True,True,True acknowledgement,10.48550/arxiv.2402.05171,doi10.48550/arxiv.2402.05171,"Acknowledgements. The research leading to these results has received funding from the French Agence Nationale de la Recherche (ANR), under grant MASSIF (ANR-21-CE31-0018-02). The computational resources and services used in this work were provided by the VSC (Flemish Supercomputer Center), funded by the Research Foundation - Flanders (FWO) and the Flemish Government department EWI. CA acknowledges financial support from the KU Leuven Research Council (grant C16/18/005: PARADISE) and from the European Research Council (ERC) under the Horizon Europe programme (Synergy Grant agreement N°101071505: 4D-STAR). While partially funded by the European Union, views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. The authors are grateful to the anonymous referee for their feedback. This research made use of the numpy (Harris et al. 2020) and matplotlib (Hunter 2007) Python software packages.",True,False,True acknowledgement,10.1101/2020.10.28.359976,doi10.1101/2020.10.28.359976,"Funding: This study was supported by National Institutes of Health R01HL083015 (TKH), R01HL111437 (TKH), R01HL129727 (TKH), R01HL118650 (TKH), I01 BX004356 (TKH).",True,False,False acknowledgement,10.21203/rs.3.rs-3658893/v1,doi10.21203/rs.3.rs-3658893/v1,"This work was supported by the UK Engineering and Physical Sciences Research Council (EPSRC) [grant numbers EP/R045518/1, and EP/X52556X/1] and the UK Natural Environment Research Council (NERC) [grant numbers NE/S007415/1, and NE/R011613/1]. The work was also supported by the Royal Society under an International Collaboration Award 2020 [grant number ICA\R1\201302]. B.W. and H.B. would like to gratefully acknowledge the support of NERC and the Grantham Institute – Climate Change and the Environment for Ph.D. scholarships. J.N. thanks the Royal Society for the award of a Research Professorship and the European Research Council for award of an Advanced Grant (grant number 742708, CAPaCITY). The authors would like to thank Dr Andreas Olympios for guidance",True,False,False acknowledgement,10.1101/2024.01.30.24301966,doi10.1101/2024.01.30.24301966,"TEG, SL, DPD, AT, SC, HK, and ER were supported by NIA grant R01AG051346.The authors report no conflicts of interest.",True,False,False acknowledgement,10.1101/2022.07.26.501605,doi10.1101/2022.07.26.501605,"We thank Dr. Panagiotis Kastritis and Dr. Steven Johnson for critical reading of the manuscript. We are grateful to Lily Rose for the help with some two-hybrid analyses. This research was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2008 – 390540038 – UniSysCat and project 426290502 and, in part, by the Wellcome Trust [Grant number 203149]. For the purpose of open access, the authors have applied a CC BY public copyright license to any Author Accepted Manuscript version arising from this submission.",True,False,False acknowledgement,10.1101/871624,doi10.1101/871624,The authors acknowledge financial support from the MRC (MR/P011225/1 to BS) and the National Institutes of Health (R01 AI093870 to AJY). We thank Fiona Powrie and the Oxford Centre for Microbiome Studies for germ-free mice.,True,False,False acknowledgement,10.21203/rs.3.rs-871716/v1,doi10.21203/rs.3.rs-871716/v1,"This work was supported by National Natural Science Foundation of China (No. 82072076, 82072165 and 81871556), and Young Top Talents in Xing Liao Talents Program of Liaoning Province (XL YC1807183).",True,False,False acknowledgement,10.1101/2021.09.13.460028,doi10.1101/2021.09.13.460028,"This is publication ISEM-YYYY-XXX of the Institut des Sciences de l'Evolution – Montpellier. This work was supported by a grant from the Agence Nationale de la Recherche (No.: ANR-19-CE02-0015) to EAF. BR gratefully acknowledges the support of iDiv funded by the German Research Foundation (DFG-FZT 118, 202548816). The scientific results have in part been computed at the High-Performance Computing Cluster EVE of the Helmholtz Centre for Environmental Research (UFZ) and iDiv, and we thank Christian Krause for technical support.",True,False,False acknowledgement,10.1101/829036,doi10.1101/829036,"This research was funded by decisions #266523 and #304519 to TMR from the Academy of Finland, the Doctoral Programme in Plant Science grant and Lammi Biological Station's Environmental Research Foundation grant 2017 and 2018 to CCB. We thank Lammi Biological Station, Paula Lebowski, Santa Neimane, and Marta Pieristè for the help with fieldwork, and Titta Kotilainen for her advice on plotting spectra.",True,False,False acknowledgement,10.1101/2021.08.06.455448,doi10.1101/2021.08.06.455448,"This work was supported by FACEPE (Fundação de Amparo à Ciência e Tecnologia do Estado de Pernambuco, grant no. IBPG-1520-2.03/18 and APQ-0409-2.02/16) and CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico, grant no. 310804/2017-5 and no. 313944/2020-2). | We also thank FACEPE (Fundação de Amparo à Ciência e Tecnologia do Estado de Pernambuco) and CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico) for financial support.",True,False,False acknowledgement,10.22541/au.169468781.18932093/v1,doi10.22541/au.169468781.18932093/v1,"This work was supported by an SSE Lewontin Award to MRW, a UGA Plant Center award to MRW, a Robin Hightower Genetics Graduate Support Fund award to MRW, and National Science Foundation grants IOS-1827645 and DEB-1856180 to ALS.",True,False,False acknowledgement,10.48550/arxiv.2211.02500,doi10.48550/arxiv.2211.02500,"The author gratefully acknowledge partial financial supports from the National Natural Science Foundation of China (11871249, 12171155).",True,False,False acknowledgement,10.1101/2023.05.05.23289547,doi10.1101/2023.05.05.23289547,"Funding: KSB, JA, TD, and RT were supported by the Cancer Research United Kingdom (grant no. C8221/A29017). HBS and AVS are funded by The Swedish Cancer Society (Grants 20 0990). RMM is a National Institute for Health Research Senior Investigator (NIHR202411). RMM is supported by a Cancer Research UK 25 (C18281/A29019) programme grant (the Integrative Cancer Epidemiology Programme). RMM is also supported by the NIHR Bristol Biomedical Research Centre which is funded by the NIHR (BRC-1215-20011) and is a partnership between University Hospitals Bristol and Weston NHS Foundation Trust and the University of Bristol. RMM is affiliated with the Medical Research Council Integrative Epidemiology Unit at the University of Bristol which is supported by the Medical Research Council (MC_UU_00011/1, MC_UU_00011/3, MC_UU_00011/6, and MC_UU_00011/4) and the University of Bristol. Department of Health and Social Care disclaimer: The views expressed are those of the author(s) and not necessarily those of the NHS, the NIHR or the Department of Health and Social Care.",True,False,False acknowledgement,10.48550/arxiv.math/9911003,doi10.48550/arxiv.math/9911003,"*Supported by NSF grant DMS-96-26633. | †Supported by a Sloan Foundation Fellowship, and NSF grants DMS-95-05175, DMS-96-26911.",True,False,False acknowledgement,10.1101/2020.09.23.310201,doi10.1101/2020.09.23.310201,"We acknowledge help from R. Majed in performing bacterial transformations. DF thanks Kirill Korolev and Oskar Hallatschek for helpful discussions. MH acknowledges studentship funding from EPSRC under grant number EP/R513180/1. NK acknowledges funding from the Gates Cambridge Scholarship. TL acknowledges college grant from St Edmund Hall. This work was performed using resources provided by the Cambridge Service for Data Driven Discovery (CSD3) operated by the University of Cambridge Research Computing Service, provided by Dell EMC and Intel using Tier-2 funding from the Engineering and Physical Sciences Research Council (capital grant EP/P020259/1), and DiRAC funding from the Science and Technology Facilities Council.",True,True,False acknowledgement,10.21203/rs.3.rs-16448/v2,doi10.21203/rs.3.rs-16448/v2,"This work was funded by Georgia CTSA Grants TL1TR002382 and UL1TR002378, NASA grant NNX16AT06G, and the Georgia Research Alliance (CRE).",True,False,False acknowledgement,10.26434/chemrxiv.14049719.v1,doi10.26434/chemrxiv.14049719.v1,"The research leading to these results has received funding from Spanish Ministerio de Ciencia e Innovación (PID2019-111189GB-I00 and CTQ2017-92173-EXP). We are grateful to the UK Materials and Molecular Modelling Hub for computational resources, which is partially funded by EPSRC (EP/P020194/1 and EP/T022213/1).",True,False,False acknowledgement,10.1101/2024.04.15.589443,doi10.1101/2024.04.15.589443,This work was supported in part by National Institutes of Health grants R21AI104166 and R21AI118351. Additional funding was provided by Health Research Inc grant #11009701.,True,False,False acknowledgement,10.21203/rs.3.rs-711022/v1,doi10.21203/rs.3.rs-711022/v1,"This work was supported by ""the National Science Foundation of China"" (81800995)",True,False,False acknowledgement,10.48550/arxiv.math/0504062,doi10.48550/arxiv.math/0504062,* Research supported by the National Science Foundation.,True,False,False acknowledgement,10.1101/2024.07.28.605537,doi10.1101/2024.07.28.605537,"The authors would like to acknowledge the Katharina Gaus Light Microscopy Facility (KGLMF) and their staff for the continuous support in imaging resources and assistance in image processing and analysis. Special acknowledgement to Dr. Michael Carnell for developing the NoBS algorithm for the analysis of F-actin stress fibers alignment; Dr. Elvis Pandzic for assisting and training V.P. in custom-built MATLAB scripts for the analysis of cell shape, volume; and Dr. Celine Heu for assistance with the AFM; Dr. Chantal Kopecky for assistance in deformability cytometry. V.P. would like to thank the Scientia PhD Scholarship scheme from UNSW for support throughout her doctoral research studies. This work has been supported in part by grants from the National Health and Medical Research Council (MLKT, KAK) and the National Institute of Health (KAK).",True,False,True acknowledgement,10.31223/osf.io/ezr6u,doi10.31223/osf.io/ezr6u,"Partial financial support was provided by the Deutsche Forschungsgemeinschaft (DFG grants BA 2207/6-1 and INST 90/678-1 FUGG), the European Commission H2020 Marie Skłodowska-Curie Action (grant 706088) and the Universitätsbund of Friedrich-Alexander-Universität Erlangen-Nürnberg.",True,False,False acknowledgement,10.48550/arxiv.1703.07508,doi10.48550/arxiv.1703.07508,"The authors thank N. Balsara and Z-G. Wang for insightful discussions regarding grain growth in block copolymers, S. Sinha for assistance with MALDI-TOF measurements, and the reviewers for helpful feedback. This work was supported by NSF under DMR-1410568 and DMR-1119826. Facilities use was supported by YINQE. P.G. acknowledges support under DMR-1507409. Additionally, this research used resources of the Center for Functional Nanomaterials, which is a U.S.DOE Office of Science Facility, at Brookhaven National Laboratory under Contract No. de-sc0012704.",True,False,False acknowledgement,10.1101/237693,doi10.1101/237693,"We acknowledge members of the NYGC Technology Innovation and Satija labs for critical discussions and support. We thank M. Coppo, S. Fennessey, B. Baysa and S. Pescatore at NYGC for sequencing support. This work was supported by the Chan Zuckerberg Initiative (HCA-A- 1704-01895, to RS and PS), NIHR21-HG-009748 (to PS), and an NIH New Innovator Award (DP2-HG-009623, to RS).",True,False,False acknowledgement,10.48550/arxiv.2202.09789,doi10.48550/arxiv.2202.09789,"The authors would like to thank the anonymous reviewers for their insightful comments and suggestions, which can substantially improve the quality of this work. Ke Liu and Guang Yang have contributed equally to this work and they are co-first authors. This work is supported in part by the National Natural Science Foundation of China (Grant no. 61872263), The Open Project of State Key Laboratory of Information Security (Institute of Information Engineering, Chinese Academy of Sciences) (Grant No. 2020-MS-07).",True,False,False acknowledgement,10.48550/arxiv.2206.00239,doi10.48550/arxiv.2206.00239,The author is partially supported by the National Key R&D Program of China (Grant No. 2020YFA0713000) and China Postdoctoral Science Foundation (Grant No. 315251).,True,False,False acknowledgement,10.26434/chemrxiv-2024-jtt33,doi10.26434/chemrxiv-2024-jtt33,"This work was supported by the DFG, project GO 3250/2-1 A.G. and C.G.L..",True,False,False acknowledgement,10.48550/arxiv.1912.10462,doi10.48550/arxiv.1912.10462,"Thanks to Riccardo Maffucci for being my supervisor in this project, who has been indispensable in every sense. Thanks also to the LMS and Oxford University Math Institute for providing funding for this project. I would also like to thank Zeév Rudnick and R. Heath-Brown for generously answering my questions about their work.",True,False,False acknowledgement,10.1101/684985,doi10.1101/684985,"PR, LM, WV acknowledge funding from the Research Foundation Flanders under grant agreement number G.0328.16N. LM acknowledges funding from the European Union’s Horizon 2020 Programme under Grant Agreement 823839 (H2020-INFRAIA-2018-1). NH and LM acknowledge funding from a Concerted Research Action grant from Ghent University under grant agreement number BOF12/GOA/014. EV is a postdoctoral research fellow of the Research Foundation Flanders under grant agreement number 12F0816N. The authors are grateful to all submitters to the PRIDE database for making their proteomics data publicly available.",True,True,False acknowledgement,10.1101/2022.04.14.488295,doi10.1101/2022.04.14.488295,"This work was supported by the Swedish Research Council (2017-04018 and 2021-03992 to M.H.), the European Research Council (HIGH-GEAR 724394 to M.H.), the Knut and Alice Wallenberg Foundation (20217.0275 and 2019.0436 to M.H.), and National Institutes of Health grants GM133081 (to K.D.S.), GM117126 (to N.K.S.), GM55302 (to V.K.Y.), GM110501 (to J.Y.) and GM126289 (to J.K.). A.M.O., P.A., and A.Bu. were supported by Diamond Light Source, the UK Science and Technology Facilities Council (STFC), a jointly funded strategic award from the Wellcome Trust and the Biotechnology and Biological Sciences Research Council (102593 to James Naismith), a Wellcome Investigator Award (210734/Z/18/Z to A.M.O.), and a Royal Society Wolfson Fellowship (RSWF\R2\182017 to A.M.O.). The DOT instrument used in this research was funded by Department of Energy (DOE), Office of Science, Office of Basic Energy Sciences (BES), Division of Chemical Sciences, Geosciences, and Biosciences (to J.K., J.Y., and V.K.Y.). XFEL data was collected under proposal LU50 at LCLS, SLAC, Stanford, USA, and under proposal 2017B8085 at BL2 of SACLA, Japan. The Rayonix detector used at LCLS was supported by the NIH grant S10 OD023453. Use of the LCLS, SLAC National Accelerator Laboratory, is supported by the U.S. DOE, Office of Science, BES, under contract no. DE-AC02-76SF00515.",True,True,False acknowledgement,10.1101/2020.02.25.964403,doi10.1101/2020.02.25.964403,"This study was supported by grants R01EY022161 (VVM), P30EY030413 (VVM), and R35GM118103 (DRC) from the National Institutes of Health, Bethesda, MD, an unrestricted grant from Research to Prevent Blindness, New York (VVM), Harrington Scholar-Innovator Award from Harrington Discovery Institute (VVM), the Alfred and Kathy Gilman Special Opportunities in Pharmacology Fund (DRC), and the Robert A. Welch Foundation I-1244 (DRC).",True,False,False acknowledgement,10.21203/rs.3.rs-2662244/v1,doi10.21203/rs.3.rs-2662244/v1,"The UK Medical Research Council and Wellcome (Grant ref: 102215/2/13/2) and the University of Bristol provide core support for ALSPAC. A comprehensive list of grants funding is available on the ALSPAC website (http://www.bristol.ac.uk/alspac/external/documents/grant-acknowledgements.pdf). JMA is supported by the Wolfson Centre for Young People’s Mental Health at Cardiff University. REW is supported by a postdoctoral fellowship from the South-Eastern Norway Regional Health Authority (2020024). CMAH is supported by a Philip Leverhulme Prize. This publication is the work of the authors, and JMA will serve as guarantor for the contents of this paper.",True,False,False acknowledgement,10.48550/arxiv.2401.00652,doi10.48550/arxiv.2401.00652,* indicates the corresponding author. This work was supported by the National Natural Science Foundation of China under Grants U20B2051 and U1936214.,True,False,False acknowledgement,10.21203/rs.3.rs-193098/v1,doi10.21203/rs.3.rs-193098/v1,"This work was supported by the Ministry of Science and Technology of China through the Program ""Driving process and mechanism of three dimensional spatial distribution of high risk organic pollutants in multi field coupled sites"" (Project Code: 2019YFC1804303) and ""Research on Mechanism of Groundwater Exploitation and Seawater Intrusion in Coastal Areas"" (Project Code: 20165037412), and the program ""Postgraduate Research & Practice Innovation Program of Jiangsu Province"" (Project Code: SJKY19_0519, 2019B60214). We acknowledge support by the German Research Foundation and the Open Access Publication Funds of the Göttingen University. | Open Access funding enabled and organized by Projekt DEAL.",True,True,True acknowledgement,10.1101/857268,doi10.1101/857268,"The study was funded by grants from the Carnegie Trust for the Universities of Scotland (70743) and Moray Endowment Fund. PH was also supported by the University of Edinburgh Centre for Cognitive Ageing and Cognitive Epidemiology, part of the cross council Lifelong Health and Wellbeing Initiative (MR/K026992/1). Funding from the Biotechnology and Biological Sciences Research Council (BBSRC) and Medical Research Council (MRC) is gratefully acknowledged.",True,True,False acknowledgement,10.48550/arxiv.cond-mat/9806244,doi10.48550/arxiv.cond-mat/9806244,"This work was supported by Grants RFBR 96-02-17497, RFBR 97-02-16829, and INTAS-RFBR 95-302 and by the Programme ""Statistical Physics"" from the Russian Ministry of Sciences.",True,False,False acknowledgement,10.1101/202473,doi10.1101/202473,"This project was supported by the National Institutes of Health AI093533A, HL129795, CA016672, EY007551, EY018239, and the Cancer Prevention Research Institute of Texas RP110166.",True,False,False acknowledgement,10.48550/arxiv.2004.12371,doi10.48550/arxiv.2004.12371,"Acknowledgments We thank Christoph Haase, Leonid Libkin, and Pascal Bergsträßer for their help during the preparation of this work. Matthew Hague is supported by EPSRC [EP/T00021X/1]. Anthony Lin is supported by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement no 759969), and by Max-Planck Fellowship. Philipp Rümmer is supported by the Swedish Research Council (VR) under grant 2018-04727, and by the Swedish Foundation for Strategic Research (SSF) under the project WebSec (Ref. RIT17-0011). Zhilin Wu is partially supported by the NSFC grant No. 61872340, Guangdong Science and Technology Department grant (No. 2018B010107004), and the INRIA-CAS joint research project VIP.",True,False,False acknowledgement,10.48550/arxiv.2307.02264,doi10.48550/arxiv.2307.02264,"The second author was partially supported by the Graduiertenkolleg 2339 IntComSin of the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – Project-ID 321821685. The support is gratefully acknowledged.",True,False,False acknowledgement,10.48550/arxiv.1905.05179,doi10.48550/arxiv.1905.05179,"This work was done while AM was at Microsoft Research. AM acknowledges the concurrent support in part by a grant from the Open Philanthropy Project to the Center for Human-Compatible AI, and in part by NSF grant CAREER IIS-1452099.",True,False,False acknowledgement,10.21203/rs.3.rs-3414062/v1,doi10.21203/rs.3.rs-3414062/v1,This project is funded by the Australian Government Medical Research Future Fund Preventative Public Health Research Initiative (2019; GNT1200764). HC is supported by a National Heart Foundation Future Leader Fellowship (#102549) and partially by the Australian Government through the Australian Research Council's Centre of Excellence for Children and Families over the Life Course (Project ID CE200100025). BJJ is supported by an Early- Mid Career Researcher Fellowship from The Hospital Research Foundation Group (2022-CF-EMCR-008-QA25323). RB is supported by an Australian Research,True,False,False acknowledgement,10.48550/arxiv.2404.09490,doi10.48550/arxiv.2404.09490,Experiments are based on the NAVER Smart Machine Learning NSML [19] platform. This research was partly supported by the Bio \& Medical Technology Development Program of the National Research Foundation (NRF) (No. 2021M3A9E4080782) and the IITP grants [No. RS-2021-II212068; No. RS-2021II211343] funded by the Korean government (MSIT).,True,False,False acknowledgement,10.48550/arxiv.1811.08305,doi10.48550/arxiv.1811.08305,"This work is supported by the National Science and Engineering Research Council of Canada (NSERC), discovery grant program, and by the ETS Research Chair on Artificial Intelligence in Medical Imaging.",True,False,False acknowledgement,10.1101/509174,doi10.1101/509174,"We thank D. Black for providing the PTBP1 antibody (Bb7) and for helpful discussions. We also thank W. Li, F. R. Ward, and A. S.-Y. Lee for helpful discussions. This work was funded by a predoctoral fellowship to L.M.A.T. through CAPES Science Without Borders (fellowship P-3-03822) and by grant P50-GM102706 from NIGMS to J.H.D.C.",True,False,False acknowledgement,10.26434/chemrxiv-2023-6ngm1,doi10.26434/chemrxiv-2023-6ngm1,"This work was supported by United States Department of Energy, Office of Science, Basic Energy Sciences, under Award No. DE-SC0018645 for network synthesis and characterization of tensile, adhesive, and swelling properties.",True,False,False acknowledgement,10.48550/arxiv.1603.08487,doi10.48550/arxiv.1603.08487,"The first author was partially supported by Conicyt (Programa de Inserción de Capital Humano Avanzado, PAI 79140019). The second author was partially supported by Fondecyt (Grant No. 1141254). The research of the third author has been cofinanced by the European Union (European Social Fund—ESF) and Greek national funds through the Operational Program ""Education and Lifelong Learning"" of the National Strategic Reference Framework (NSRF)—Research Funding Program: THALES: Reinforcement of the interdisciplinary and/or inter-institutional research and innovation.",True,False,False acknowledgement,10.1101/2020.10.16.343137,doi10.1101/2020.10.16.343137,"Algorithm development and image analysis for this study were partially supported by the National Institute on Aging (RF1AG051710, R21AG065942, R01AG031581 and P30AG19610), the National Library of Medicine, National Cancer Institute, the National Institute for Biomedical Imaging and Bioengineering (R01EB025032), and the Arizona Alzheimer Consortium. | Data collection and sharing for this project was funded by the Alzheimer's Disease Neuroimaging Initiative (ADNI) (National Institutes of Health Grant U01 AG024904) and DoD ADNI (Department of Defense award number W81XWH-12-2-0012). ADNI is funded by the National Institute on Aging, the National Institute of Biomedical Imaging and Bioengineering, and through generous contributions from the following: Alzheimer's Association; Alzheimer's Drug Discovery Foundation; BioClinica, Inc.; Biogen Idec Inc.; Bristol-Myers Squibb Company; Eisai Inc.; Elan Pharmaceuticals, Inc.; Eli Lilly and Company; F. Hoffmann-La Roche Ltd and its affiliated company Genentech, Inc.; GE Healthcare; Innogenetics, N.V.; IXICO Ltd.; Janssen Alzheimer Immunotherapy Research & Development, LLC.; Johnson & Johnson Pharmaceutical Research & Development LLC.; Medpace, Inc.; Merck & Co., Inc.; Meso Scale Diagnostics, LLC.; NeuroRx Research; Novartis Pharmaceuticals Corporation; Pfizer Inc.; Piramal Imaging; Servier; Synarc Inc.; and Takeda Pharmaceutical Company. The Canadian Institutes of Health Research is providing funds to support ADNI clinical sites in Canada. Private sector contributions are facilitated by the Foundation for the National Institutes of Health (www.fnih.org). The grantee organization is the Northern California Institute for Research and Education, and the study is coordinated by the Alzheimer's Disease Cooperative Study at the University of California, San Diego. ADNI data are disseminated by the Laboratory for Neuro Imaging at the University of Southern California.",True,True,False acknowledgement,10.1101/688168,doi10.1101/688168,D.A.S. was supported by a GRA Fellowship from the Cornell College of Veterinary Medicine. This work was supported by Cornell University startup funds and a Seed Grant from the Cornell University Stem Cell Program to C.E.A.,True,False,False acknowledgement,10.48550/arxiv.2407.05314,doi10.48550/arxiv.2407.05314,The authors acknowledge the UKRI Future Leaders Fellowship 'Printing the future of space telescopes' under grant # MR/T042230/1 and the advice provided by Patrick Risch (Glassomer) and Markus Demharter (SGL Carbon). N. Yu acknowledges the Royal Society under grant # IEC/R3/213107. | The SICAPRINT prototype presented in Section 2 was printed as part of the European Union's Horizon 2020 research and development programme under grant agreement # 730890 (OPTICON Work package 5). The design was created through a collaboration of Instituto de Astrofísica de Canarias and TNO in the Netherlands. C. Atkins acknowledges the support of F. Tenegi-Sanginés and A. Vega-Moreno in providing prototype information. C. Atkins acknowledges the role of N. Yu (co-author) in seeing the potential of the OPTICON prototype and in making the connection with Osaka University.,True,False,False acknowledgement,10.21203/rs.3.rs-2952641/v1,doi10.21203/rs.3.rs-2952641/v1,"Funding The project described was supported by the National Institute of General Medical Sciences, 5U54GM104942-04. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH. | The analyses described in this publication were conducted with data or tools accessed through the NCATS N3C Data Enclave covid.cd2h.org/enclave and supported by CD2H - The National COVID Cohort Collaborative (N3C) IDeA CTR Collaboration 3U24TR002306-04S2 NCATS U24 TR002306. This research was possible because of the patients whose information is included within the data from participating organizations (covid.cd2h.org/dtas) and the organizations and scientists (covid.cd2h.org/duas) who have contributed to the on-going development of this community resource (cite this https://doi.org/10.1093/jamia/ocaa196).",True,True,False acknowledgement,10.48550/arxiv.cs/0606014,doi10.48550/arxiv.cs/0606014,"This research was supported in part by NSF grants CCF-0448181,CCF- 0552741, ECS-0218207 and ECS-0225448, THECB ARP 010115-0013-2006, the Office of Naval Research through the Electric Ship Research and Development Consortium and a grant from Freescale Semiconductor Corporation. Wei Wu was also supported by the Hemphill-Gilmore Student Endowed Fellowship through the University of Texas at Austin.",True,False,False acknowledgement,10.1101/2023.05.19.23290190,doi10.1101/2023.05.19.23290190,"This work was supported in part by grants from the National Institutes of Health (NIH) including the National Institute of Allergy and Infectious Diseases (NIAID) [R03AI133172 to MJM, R03AI139871 to RRK, R01AI153152 to MJM] and the Fogarty International Center (FIC) [D43TW007124 to HMB for the ""Emory-Georgia TB Research Training Program"", R21TW011157 to MK and MJM]. ADS was supported by a Vanderbilt Emory Cornell Duke (VECD) Global Health Fellowship, funded by the NIH FIC NIH (D43TW009337). The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.",True,False,False acknowledgement,10.48550/arxiv.2205.07798,doi10.48550/arxiv.2205.07798,"This work is partially supported by the National Natural Science Foundation of China (Grant No. 11721101), and by National Key Research and Development Project SQ2020YFA070080.",True,False,False acknowledgement,10.1101/2024.05.19.594887,doi10.1101/2024.05.19.594887,"We appreciate Craig H. Bailey (Columbia University) for critical reading and suggestions. This work was supported by the grants from National Research Foundation of Korea (NRF), NRF 2020R1A6A3A01099508 and NRF 2021R1I1A1A01044359 to H.J.K; NRF 2021R1A6A1A10042944 and POSCO TJ Foundation to S.L; NRF 2020M3H1A1075314 and NRF 2021R1A6A3A01087288 to T.Y; NRF RS-2023-00271562 to H.L; KBRI Basic research program (23-BR-01-03) to K.J.L; NRF 2018R1A3B1052079 and RS-2023-00265883 to J.-H.K.",True,False,False acknowledgement,10.48550/arxiv.1812.00404,doi10.48550/arxiv.1812.00404,W.H. was supported by the NSF via the TRIPODS program and by Berkeley Institute for Data Science. R.F.B. was partially supported by the NSF via grant DMS-1654076 and by an Alfred P. Sloan fellowship.,True,True,False acknowledgement,10.1101/484584,doi10.1101/484584,"The study was supported by Goldsmiths University of London, the British Academy, through grant SG161006, and the German Research Foundation (DFG - Deutsche Forschungsgemeinschaft), through project HE 6013/1-2 to MHR. The authors would like to thank two anonimous reviewers for their excellent suggestions, which improved the manuscript considerably.",True,False,False acknowledgement,10.48550/arxiv.1510.06479,doi10.48550/arxiv.1510.06479,"The authors thank Yoichi Miyawaki, Yasuhito Sawahata, Makoto Takemiya, and Kei Majima for helpful comments on the manuscript; and Mitsuaki Tsukamoto for help with data collection. Guohua Shen for help with implementing codes for generating preferred images. This research was supported by grants from JSPS KAKENHI Grant number JP26119536, JP26870935, JP15H05920, JP15H05710, a contract with the Ministry of Internal Affairs and Communications entitled ""Novel and innovative R&D making use of brain structures"", ImPACT Program of Council for Science, Technology and Innovation (Cabinet Office, Government of Japan), and the New Energy and Industrial Technology Development Organization (NEDO).",True,True,False acknowledgement,10.48550/arxiv.0810.4171,doi10.48550/arxiv.0810.4171,"This work was carried out at Rensselaer Polytechnic Institute and was supported by the Air Force Research Laboratory, Rome, NY.",True,False,False acknowledgement,10.48550/arxiv.2110.00796,doi10.48550/arxiv.2110.00796,"* Work done when Wenxuan Zhang was an intern at Alibaba. This work was supported by Alibaba Group through Alibaba Research Intern Program, and a grant from the Research Grant Council of the Hong Kong Special Administrative Region, China (Project Codes: 14204418).",True,False,False acknowledgement,10.1101/281089,doi10.1101/281089,"We would like to thank EJ Chichilnisky for generously providing data and valuable discussion. We also thank II Memming Park and Jacob Yates for helpful comments. This work was supported by the McKnight Foundation (JWP), the Simons Foundation (SCGB AWD1004351, JWP), an NSF CAREER Award IIS-1150186 (JWP), a grant from the NIMH (MH099611, JWP), the Howard Hughes Medical Institute (FR), and a grant from the NIH (EY011850, FR).",True,True,False acknowledgement,10.48550/arxiv.2004.01167,doi10.48550/arxiv.2004.01167,"This research has been supported by grant TIN2016-77206-R from the Spanish Government, co-financed by the European Regional Development Fund. IP received a predoctoral grant and RSC a postdoctoral grant from UNED, both co-financed by the Regional Government of Madrid with funds from the Youth Employment Initiative (YEI) of the European Union.",True,False,False acknowledgement,10.31234/osf.io/52ey4,doi10.31234/osf.io/52ey4,This project has received funding from the European Union's Horizon2020 research and innovation programme under the Marie Skłodowska Curie grant agreement No 765556.,True,False,False acknowledgement,10.48550/arxiv.math/9801151,doi10.48550/arxiv.math/9801151,¹ The author is supported by the Basic Research Foundation of the Israel Academy of Sciences; publication 531. | ² The author is supported by the Swiss National Science Foundation,True,False,False acknowledgement,10.48550/arxiv.2407.08781,doi10.48550/arxiv.2407.08781,"This work is funded through the JWST/NIRCam contract to the University of Arizona, NAS5-02015, and JWST Program 3215. The JWST data presented in this article were obtained from the Mikulski Archive for Space Telescopes (MAST) at the Space Telescope Science Institute. The specific observations analyzed can be accessed via doi:10.17909/8tdj-8n28. AJB acknowledges funding from the ""FirstGalaxies"" Advanced Grant from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (Grant agreement No. 789056). B.E.M. was supported by the Heising-Simons Foundation 51 Pegasi b Postdoctoral Fellowship. S.C acknowledges support by European Union's HE ERC Starting Grant No. 101040227 - WINGS. FDE and IJ acknowledge support by the Science and Technology Facilities Council (STFC), by the ERC through Advanced Grant 695671 ""QUENCH"", and by the UKRI Frontier Research grant RISEandFALL. DJE is supported as a Simons Investigator and by JWST/NIRCam contract to the University of Arizona, NAS5-02015. ST acknowledges support by the Royal Society Research Grant G125142. The research of CCW is supported by NOIRLab, which is managed by the Association of Universities for Research in Astronomy (AURA) under a cooperative agreement with the National Science Foundation. BER acknowledges support from the NIRCam Science Team contract to the University of Arizona, NAS5-02015, and JWST Program 3215. The authors acknowledge use of the lux supercomputer at UC Santa Cruz, funded by NSF MRI grant AST 1828315.",True,True,False acknowledgement,10.31234/osf.io/xe65t,doi10.31234/osf.io/xe65t,"The work of Athanassios Protopapas is partially supported by The Research Council of Norway, Centres of Excellence, Grant 331640.",True,False,False acknowledgement,10.21203/rs.3.rs-208862/v1,doi10.21203/rs.3.rs-208862/v1,"This work is supported by the Ministry of Education, Culture, Sports, Science, and Technology of Japan (MEXT) ESICMM Grant Number 12016013; the Program for Promoting Research on the Supercomputer Fugaku (DPMSD); the JST-Mirai Program ""Development of Materials Design Workflow and Data Library for Materials Foundry,"" Grant Number JPMJMI18G5; and JSPS KAKENHI Grants 20K05301, JP19H05815 (Grants-in-Aid for Scientific Research on Innovative Areas Interface Ionics), and 20K05068, Japan.",True,True,False acknowledgement,10.48550/arxiv.1701.01791,doi10.48550/arxiv.1701.01791,"This work was supported in part by NSF CCF-1615475, NSF XPS-1337198 and AFRL FA8750-15-2-0048. Any opinions, findings and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of grant agencies or their contractors.",True,False,False acknowledgement,10.48550/arxiv.2410.05645,doi10.48550/arxiv.2410.05645,"We thank Eli Kranjec, Donghao Ren, Halden Lin, Yannick Assogba, and Fred Hohman for feedback and contributions to the framework design. This work was supported by a National Science Foundation Graduate Research Fellowship (DGE2140739), and by the Carnegie Mellon University Center of Machine Learning and Health.",True,False,False acknowledgement,10.48550/arxiv.2308.00342,doi10.48550/arxiv.2308.00342,"This work was supported by the National Natural Science Foundation of China (Grants Nos. 11975072, 11875102 and 11835009), the National SKA Program of China (Grants Nos. 2022SKA0110200 and 2022SKA0110203), Shaanxi Provincial Education Department (Grant No. 21JK0556), and Shaanxi Provincial Department of Science and Technology (Grant No. 2023-JC-QN-0077).",True,False,False acknowledgement,10.21203/rs.3.rs-514812/v1,doi10.21203/rs.3.rs-514812/v1,"This study was supported by the National Natural Science Foundation of China (grant No. 81730008, 81770201, 81870153), Key Project of Science and Technology Department of Zhejiang Province (grant No. 2019C03016, 2018C03016-2, 2021C03010).",True,False,False acknowledgement,10.21203/rs.3.rs-3062984/v1,doi10.21203/rs.3.rs-3062984/v1,"This work was supported: Italian Association for Cancer Research (AIRC) grant ID 22759 to G.B.; Italian Association for Cancer Research (A.I.R.C.) grant ID 15255, and Italian Ministry of Health (RF-2019-12368737) to M.F.",True,False,False acknowledgement,10.21203/rs.3.rs-131840/v1,doi10.21203/rs.3.rs-131840/v1,This work was supported by the Victorian Cancer Agency (VCA) through which the first author was a recipient of an Early Career Seed Grant,True,False,False acknowledgement,10.2139/ssrn.4462665,doi10.2139/ssrn.4462665,We would like to thank Onur Kesten for helpful comments. This work was supported by JSPS KAKENHI Grant Numbers 20K01675 and 22K01402.,True,False,False acknowledgement,10.1101/706762,doi10.1101/706762,"Funding: Support for this work was provided by the US National Science Foundation (1511333 to JOD, 1510929 to SPC, 1511996 to BJG, 1511721 to JHC) and the Office of Naval Research (000141712248 to MCL, N00140810654 to JHC). KNL was supported by a National Science Foundation Graduate Research Fellowship under grant DGE-1745303.",True,False,False acknowledgement,10.26434/chemrxiv.12203240.v2,doi10.26434/chemrxiv.12203240.v2,"This work was supported by JST PRESTO (Grant No. JPMJPR17N1 for N.A. and JPMJPR16N8 for Y.H.), Grant-in-Aid for JSPS KAKENHI Grant (No. JP20K15252 for N.A.) and JST-ERATO (Grant No. JPMJER1903 for S.M. and Y.H.). The computations were partially performed at the computer cennter of Kyoto University and the HOKUSAI system at RIKEN.",True,True,False acknowledgement,10.1101/2021.03.16.21253729,doi10.1101/2021.03.16.21253729,"We thank the Bioinformatics and Expression Analysis core facility (BEA) at Karolinska Institute that preformed the sequencing analysis. We thank the Swedish National Infrastructure for Computing (SNIC) at National Supercomputing Centre (NSC), Linköping University for the computing systems enabling the data handling, partially funded by the Swedish Research Council through grant agreement N° 2018-05973. The work was supported by grants from the Swedish Research Council (Vetenskapsrådet) N° 2018-05973 and N° 2018-04246 and the Consejo Nacional de Ciencia, Tecnología e Innovación Tecnológica CONCYTEC and Cienciactiva N° 106-2018-FONDECYT. J.D is a postdoctoral fellow supported through the Medical Infection and Inflammation Center (MIIC) at Linköping University.",True,False,False acknowledgement,10.48550/arxiv.2104.03108,doi10.48550/arxiv.2104.03108,*This work was supported by the STW project 15472 of the STW Smart Industry 2016 program,True,False,False acknowledgement,10.21203/rs.3.rs-1326519/v1,doi10.21203/rs.3.rs-1326519/v1,This study received funding from Mashhad University of Medical Sciences (number= 4000573) and University of Mohaghegh Ardabili (number= 991523). | We would like to thank Mashhad University of Medical Sciences and University of Mohaghegh Ardabili for funding this study.,True,False,False acknowledgement,10.48550/arxiv.2007.06791,doi10.48550/arxiv.2007.06791,This research was supported by the Science Challenge Project (No. TZ2016002) and the National Science Foundation in China (No. 11971041).,True,False,False acknowledgement,10.26434/chemrxiv-2024-z9f59-v2,doi10.26434/chemrxiv-2024-z9f59-v2,"Financial support from the DST-SERB, New Delhi (File No. CRG/2021/000308), and infrastructure support from the School of Chemistry, University of Hyderabad (Institution of Eminence) are acknowledged with gratitude. AB thanks the Ministry of Education, Government of India, for the award of the Prime Minister's Research Fellowship (PMRF ID: 3700975).",True,False,False acknowledgement,10.48550/arxiv.1912.07860,doi10.48550/arxiv.1912.07860,"This work is partially supported by National Natural Science Foundation of China (61902445, 61872310), partially by Fundamental Research Funds for the Central Universities of China under grant No. 19lgpy222, and partially by Natural Science Foundation of Guangdong Province of China under Grant 2019A1515011798.",True,False,False acknowledgement,10.48550/arxiv.2205.03099,doi10.48550/arxiv.2205.03099,"Acknowledgements. The work of the first named author was partially supported by PRIN 2015 Deterministic and Stochastic Evolution equations. The work of the second named author was partially supported by a public grant as part of the Investissement d'avenir project, reference ANR-11-LABX-0056-LMH, LabEx LMH, in a joint call with Gaspard Monge Program for optimization, operations research and their interactions with data sciences.",True,True,False acknowledgement,10.21203/rs.3.rs-927401/v1,doi10.21203/rs.3.rs-927401/v1,"This work is supported by NSFC (22076122) and Shanghai government (19SG42, 19520710700 and 18230742500).",True,False,False acknowledgement,10.21203/rs.2.15274/v3,doi10.21203/rs.2.15274/v3,"This work was supported by the National Key R&D Program of China (2017YFC1309604), and the Clinical Nursing Research Fund Project of the Second Xiangya Hospital, Central South University 2017-YHL-03.",True,False,False acknowledgement,10.48550/arxiv.1512.04741,doi10.48550/arxiv.1512.04741,The research leading to these results has received funding from the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme FP7/2007-2013/ under REA grant agreement \( n^{\circ} 289032 \). This paper however reflects solely the Author’s personal opinion and the Union is not liable for any use that may be made of the information contained therein.,True,False,False acknowledgement,10.21203/rs.2.20776/v2,doi10.21203/rs.2.20776/v2,"This study was financially supported by grants from the National Key R&D Program of China (2018YFD09001205). The funders were not involved in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.",True,True,False acknowledgement,10.21203/rs.2.24575/v5,doi10.21203/rs.2.24575/v5,"This work is part of the grant provided by the Department of Biotechnology, Government of India, and Medical Research Council, UK. Award number: BT/IN/DBT-MRC/DIFD/GRB/17/2018-19. | This work was supported by the Wellcome Trust/DBT India Alliance Fellowship/Grant [grant number IA/CPHI/14/1/501499] awarded to Dr. Giridhara R Babu.",True,False,False acknowledgement,10.1101/718056,doi10.1101/718056,"This study was supported by the DBT-Center of Excellence grant BT/PR13446/COE/34/30/2015, DST-ECR ECR/2015/000390 and DBT Ramalingaswami Re-entry Fellowship to T.M and Basic Science Research Program through National Research Foundation (NRF-2014S1A2A2028388 and NRF- 2017R1C1B2007343) to J.S.",True,False,False acknowledgement,10.1101/2023.09.24.559224,doi10.1101/2023.09.24.559224,"This work was supported by the National Science Foundation and the National Institutes of Health DMS/NIGMS award #2054347. The authors thank the Chedin lab, Louxin Zhang and Jian-Rong Yang for helpful discussion.",True,False,False acknowledgement,10.48550/arxiv.1802.06637,doi10.48550/arxiv.1802.06637,Acknowledgement: The authors were partially supported by the ANR (Agence Nationale de la Recherche) project ANR-16-CE40-0015-01.,True,False,False acknowledgement,10.31219/osf.io/ms2kv,doi10.31219/osf.io/ms2kv,"This work was supported by the German Centre for Rail Traffic Research (DZSF) at the Federal Railway Authority within the project ""Explainable AI for Railway Safety Evaluations (XRAISE)"" and by the German Research Foundation (DFG) under grant number: PA 1232/15-1.",True,False,False acknowledgement,10.21203/rs.3.rs-3132694/v1,doi10.21203/rs.3.rs-3132694/v1,"Acknowledgment: Hemant Raheja, the first author, is grateful to the Ministry of Education, Government of India, for funding the scholarship for this study. The authors acknowledged the National Institute of Technology, Kurukshetra, for providing various research facilities. | Funding: The Ministry of Education, Government of India, supported this project financially (Grant No. 2K19/NITK/PHD/61900011-Hemant Raheja).",True,False,False acknowledgement,10.1101/2022.05.20.22275350,doi10.1101/2022.05.20.22275350,"Data collection was funded by a Keele University Faculty of Natural Sciences Research Development award to SMS, JS and NS, and a Kings COVID Appeal Fund award granted jointly to LS, GJR, RA, NS, SMS and JS. NS research is supported by the National Institute for Health Research (NIHR) Applied Research Collaboration (ARC) South London at King's College Hospital NHS Foundation Trust. NS is a member of King's Improvement Science, which offers co-funding to the NIHR ARC South London and is funded by King's Health Partners (Guys and St Thomas NHS Foundation Trust, King's College Hospital NHS Foundation Trust, Kings College London and South London and Maudsley NHS Foundation Trust), and the Guy's and St Thomas' Foundation. The views expressed are those of the authors and not necessarily those of the NIHR, the charities, UK Health Security Agency or the Department of Health and Social Care.",True,True,False acknowledgement,10.48550/arxiv.2109.00774,doi10.48550/arxiv.2109.00774,"†Department of Mathematics, Zhejiang Normal University, Email: xdzhu@zjnu.edu.cn, Grant numbers: NSFC 11971438, U20A2068, ZJNSFC LD19A010001.",True,False,False acknowledgement,10.21203/rs.2.17021/v2,doi10.21203/rs.2.17021/v2,This study was supported by the National Natural Science Foundation of China (Grant No. 81861138048 and No. 71774005) (http://www.nsfc.gov.cn/) and China Medical Board (Grant No. 17-270) (https://chinamedicalboard.org/). The funders had no role in study,True,False,False acknowledgement,10.21203/rs.3.rs-960394/v2,doi10.21203/rs.3.rs-960394/v2,This work was supported by the National Natural Science Foundation of China (81860465 and 8216110588).,True,False,False acknowledgement,10.21203/rs.3.rs-4453852/v1,doi10.21203/rs.3.rs-4453852/v1,"This study was funded by the French Agency for Food, Environmental and Occupational Health Safety (ANSES), grant no.: ANSES-21-EST-050, as well as the French National Research Agency (ANR) as part of the ""Investissements d'Avenir"" program (ANR-11-LABX-0002-01, Lab of Excellence ARBRE), the project ""Des Hommes et Des Arbres"" (DHDA) supported by the French government through its program ""Plan d'Investissement d'Avenir - Territoire d'Innovation"", and the Metropole du Grand Nancy (grant no. 7434).",True,False,False acknowledgement,10.48550/arxiv.1705.08541,doi10.48550/arxiv.1705.08541,"The second author wishes to thank Institute of Mathematics of the Polish Academy of Sciences, where the idea of this paper births, for financial support and the warm hospitality.",True,False,False acknowledgement,10.1101/677559,doi10.1101/677559,"Funding: The work was supported by research grants to CGK (SNF PP00P3_157520, Gottfried and Julia Bangerter-Rhyner Stiftung, Olga Mayenfisch Stiftung and Swiss Life Jubiläumsstiftung).",True,False,False acknowledgement,10.48550/arxiv.2404.15406,doi10.48550/arxiv.2404.15406,"We acknowledge the CINECA award under the ISCRA ini- tiative, for the availability of high-performance computing resources and support. This work has been conducted un- der two research grants, one co-funded by Leonardo S.p.A. and the other co-funded by Altilia s.r.l., and supported by the PNRRM4C2 project ""FAIR - Future Artificial Intel- ligence Research"", funded by the European Commission, and by the PNRR project ""Italian Strengthening of Esfri RI Resilience"" (ITSERR) funded by the European Union - NextGenerationEU (CUP B53C22001770006).",True,False,False acknowledgement,10.48550/arxiv.1807.09126,doi10.48550/arxiv.1807.09126,This project is funded from the European Union's Horizon 2020 research and innovation programme under grant agreement No. 646804-ERC-COG-BNYQ. K.V.M. acknowledges partial support via Lady Davis Postdoctoral Fellowship and Andrew and Erna Finzi Viterbi Postdoctoral Fellowship.,True,False,False acknowledgement,10.21203/rs.3.rs-172431/v1,doi10.21203/rs.3.rs-172431/v1,"The authors gratefully acknowledge the finances support provided by The National Natural Science Fund (grant no. 41974148). | This research was funded by the National Natural Science Foundation of China, grant number 41974148, Hunan Provincial Key Research and Development Program, grant number 2020SK2135, Science and Technology Progress and Innovation Project of Transport Department of Hunan Province, grant number 202012 and Zhejiang 2020 Transportation Science and Technology Plan Project, grant number 2020041. The APC was funded by 41974148.",True,False,False acknowledgement,10.48550/arxiv.2005.12818,doi10.48550/arxiv.2005.12818,"This research has benefited from the financial support of IDEXLYON from Université de Lyon (project INDEPTH) within the Programme Investissements d'Avenir (ANR-16-IDEX-0005) and the SFR ""Mathématiques de la décision pour l'ingénierie physique et sociale"" (MODMAD).",True,False,False acknowledgement,10.1101/2022.06.20.496902,doi10.1101/2022.06.20.496902,"Víctor Sánchez-Gaya is supported by a doctoral fellowship from the University of Cantabria (Spain). Work in the Rada-Iglesias laboratory is supported by the EMBO Young Investigator Programme, grant PGC2018-095301-B-I00 funded by MCIN/AEI/ 10.13039/501100011033 and by ""ERDF A way of making Europe"", grant RED2018-102553-T (REDEVNEURAL 3.0) funded by MCIN/AEI /10.13039/501100011033, grant ERC CoG ""PoisedLogic"" (862022) funded by the European Research Council and grant ""ENHPATHY"" H2020-MSCA-ITN-2019-860002 funded by the European Commission.",True,False,False acknowledgement,10.48550/arxiv.1411.2514,doi10.48550/arxiv.1411.2514,"Funding for this research was provided by the ESRC Secondary Data Analysis Initative, Grant Number ES/K004433/1.",True,True,False acknowledgement,10.21203/rs.3.rs-2578728/v1,doi10.21203/rs.3.rs-2578728/v1,"This work has been supported by the Natural Science Foundation of Hunan Province, China (2021JJ30987), Key Research and Development Project of Hunan Province, China (2020sk 2056) and Innovation Project for Postgraduates of Central South University (Grant No. CX20220369).",True,False,False acknowledgement,10.21203/rs.3.rs-291189/v1,doi10.21203/rs.3.rs-291189/v1,"This work is supported by the National Key Research and Development Program of China (2017YFA0303403), the National Natural Science Foundation of China (61674058, 61574058).",True,False,False acknowledgement,10.48550/arxiv.1812.06501,doi10.48550/arxiv.1812.06501,This publication was made possible by NPRP grant 8-519- 1-108 from the Qatar National Research Fund (a member of Qatar Foundation). The findings achieved herein are solely the responsibility of the author(s).,True,False,False acknowledgement,10.48550/arxiv.2107.05262,doi10.48550/arxiv.2107.05262,W.L. and N.S. are partially supported by BSF grant no. 2018230. T.B. and D.E. are partially supported by BSF grant no. 2020159. T.B. and N.S are partially supported by the NSF-BSF award 2019752. T.B. is also supported in part by the ISF grant no. 1924/21. D.E. is supported by Simons Collaboration grant 708560. W.L. is partially supported by NSF award IIS-1837992.,True,False,False acknowledgement,10.21203/rs.3.rs-102629/v1,doi10.21203/rs.3.rs-102629/v1,"The design of this study and collection, analysis, and interpretation of data was supported by the Bio & Medical Technology Development Program of the National Research Foundation (NRF) funded by the Korean government (MSIT) (NRF-2017M3A9E8049714, 2017M3A9E8033205, 2019M3A9E8020536), South Korea",True,True,False acknowledgement,10.21203/rs.3.rs-4023571/v1,doi10.21203/rs.3.rs-4023571/v1,"Funding: This study was supported by the Grants-in-Aid for Innovative Drug Discovery and Development Project from the Japan Agency for Medical Research and Development (grant number: 21nf0101636h0001). The funding source played no role in the analysis, interpretation, or writing of this manuscript.",True,False,False acknowledgement,10.1101/2023.11.20.567982,doi10.1101/2023.11.20.567982,"We thank Hsuan-Chi Liu, Chin-Kun Fu, and Shih-Yao Mao for helping with participant recruitment and experiment preparation. We also thank Felix B. Kern and Amit Yaron for proofreading. This study was supported by Japan Society for the Promotion of Science, Japan (to Y.T.H), Ministry of Science and Technology of Taiwan, Taiwan (MOST 106-2420-H-002 -008-MY2 and MOST 109-2410-H-002-106-MY3) (to C.W), and World Premier International Research Center Initiative (WPI), MEXT, Japan (to Z.C.C.).",True,True,False acknowledgement,10.1101/2022.02.20.481171,doi10.1101/2022.02.20.481171,"The research is partly supported by NIH grants U01HG011720, U01DA052713, and P50HD103573.",True,False,False acknowledgement,10.48550/arxiv.1601.01122,doi10.48550/arxiv.1601.01122,"The authors's work has been supported by the Collaborative Research Center ""Statistical modeling of nonlinear dynamic processes"" (SFB 823) of the German Research Foundation (DFG).",True,False,False acknowledgement,10.48550/arxiv.1607.03328,doi10.48550/arxiv.1607.03328,"Acknowledgements. This work was supported by the European Research Council grant number 307617 (Bennett), JSPS Research Activity Start-up no. 26887008 and JSPS Grant-in-Aid for Young Scientists A no. 16H05995 (Bez), and NRF Republic of Korea no. 2015R1A2A2A05000956 (Lee). The authors would also like to thank the anonymous referee for their helpful comments on the first draft of the paper.",True,False,False acknowledgement,10.1101/2022.12.29.522241,doi10.1101/2022.12.29.522241,"This work was supported by NIH NCI Cancer Center Support grant P30 CA008748 (R.K.H.), NIGMS R01-GM13230704 (R.K.H.), NCI F31-CA243235 (N.P.), the Searle Scholars Program (R.K.H.) and the Josie Robertson Investigators Program (R.K.H.).",True,False,True acknowledgement,10.48550/arxiv.1305.7271,doi10.48550/arxiv.1305.7271,"DJA's and GH's contribution was funded a grant from the National Library of Medicine, ""Discovering and applying knowledge in clinical databases"" (R01 LM006910). MS's contribution was funded by by C.S. Draper Laboratory, Inc. grant number SC001 - 0000000642. We'd like to thank Professor Sato for discussions and the invitation, and NOLTA for hosting the conference.",True,True,False acknowledgement,10.21203/rs.3.rs-4784733/v1,doi10.21203/rs.3.rs-4784733/v1,"The work was supported by National Natural Science Foundation of China (No. 52303163), Guangdong Basic and Applied Basic Research Foundation (No. 2022A1515110026)",True,False,False acknowledgement,10.26434/chemrxiv-2021-r2d6j,doi10.26434/chemrxiv-2021-r2d6j,"This study is based upon a work supported in part by the Science and Engineering Research Board of the Department of Science and Technology (Grant No. EMR/2016/000362) and Board of Research in Nuclear Sciences (BRNS Grant No. 58/14/18/2020) to GNP. NBB and SS thank CSIR India and DST-INSPIRE, respectively, for the research fellowship. MK is supported by the Women Scientists Scheme of the Department of Science and Technology (Grant No. SR/WOS-A/CS-18/2019).",True,False,False acknowledgement,10.48550/arxiv.2404.12218,doi10.48550/arxiv.2404.12218,This work was supported by EPSRC grants EP/R014604/1 and EP/T031077/1. X.C. is supported by Bristol-CSC joint program.,True,False,False acknowledgement,10.48550/arxiv.1008.4949,doi10.48550/arxiv.1008.4949,EPM is sponsored by CAPES and would like to thank CAPES for all their support during her PhD. JCR is supported by an EPSRC Leadership Fel- lowship EP/G007470/1.,True,False,False acknowledgement,10.31234/osf.io/vnd6j,doi10.31234/osf.io/vnd6j,Funding statement. This research was funded in part by an Australian Research Council Discovery Grant (DP150101158) awarded to the Carolyn MacCann and Amirali Minbashian.,True,False,False acknowledgement,10.48550/arxiv.2301.04719,doi10.48550/arxiv.2301.04719,"This work is funded in part by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 392214008, and by the Bavarian Cooperative Research Program of the Free State of Bavaria - DIK-2002-0013//DIK0114/02.",True,False,False acknowledgement,10.1101/2022.11.11.516094,doi10.1101/2022.11.11.516094,This research was supported by the Beijing Municipal Science and Technology Commission and Tsinghua University.,True,False,False acknowledgement,10.31223/x5gq2r,doi10.31223/x5gq2r,"This material is based upon work supported by the National Center for Atmospheric Research, which is a major facility sponsored by the National Science Foundation under Cooperative Agreement No. 1852977. RRB, PF, and MSF also acknowledge funding from the Office of Naval Research under grant numbers PE 0601153N, N00014-20-1-2071, and ONR-005722, respectively, as part of the Tropical Cyclone Rapid Intensification Departmental Research Initiative.",True,False,False acknowledgement,10.48550/arxiv.1412.0729,doi10.48550/arxiv.1412.0729,"The second author was partially supported by NSF grants CMMI-1052750 (formerly 0928154), CMMI-1234100 and DMS 1407504.",True,False,False acknowledgement,10.48550/arxiv.2110.07707,doi10.48550/arxiv.2110.07707,"We would like to thank Mark Behrens, Andrew Blumberg, Emanuele Dotto, Jeremy Hahn, Kristian Moi, Irakli Patchkoria, Dylan Wilson, Inna Zakharevich, and Mingcong Zeng for helpful discussions. The authors were partially supported by NSF grant DMS-1547292. J.S. was also funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy EXC 2044-390685587, Mathematics Münster: Dynamics-Geometry-Structure.",True,False,False acknowledgement,10.21203/rs.3.rs-164645/v1,doi10.21203/rs.3.rs-164645/v1,"We thank funding support from National Institute of Food and Agriculture (Agriculture and Food Research Initiative grant 2015-67017- 23142) and U.S. Department of Agriculture (agreement no. 58-8050-4-003). The funding sources were not involved in the study design, conduct of the study, or collection, management, analysis, or interpretation of the data or in the preparation or review of the manuscript and had no right to approve or disapprove of the submitted manuscript. | Supported by Agriculture and Food Research Initiative grant 2015-67017- 23142 from National Institute of Food and Agriculture to SLF, Clinical and Translational Science Awards UL1TR002544 from National Institutes of Health to Tufts Clinical and Translational Science Institute, and the U.S. Department of Agriculture under agreement no. 58-8050-4-003 to Jean Mayer USDA Human Nutrition Research Center on Aging.",True,False,False acknowledgement,10.48550/arxiv.2304.06497,doi10.48550/arxiv.2304.06497,"* This work was supported by the Fundamental Research Funds for the Central Universities (2022JBMC013), the National Natural Science Foundation of China (61976017 and 61601021), and the Beijing Natural Science Foundation (4202056). Shunli Zhang is the corresponding author.",True,False,False acknowledgement,10.21203/rs.3.rs-1412017/v1,doi10.21203/rs.3.rs-1412017/v1,"This research was supported by the National Natural Science Foundation of China (Grant number 71961012), National Key R&D Program Project of China (Grant number 2017YFC0803906) and Independent Technology Project of the Company (Grant number ZL-2021-01).",True,False,False acknowledgement,10.1101/665687,doi10.1101/665687,This work was supported by the Wellcome Trust (grant number: 094597/Z/10/Z). The authors declare no competing interests.,True,False,False acknowledgement,10.48550/arxiv.2303.03633,doi10.48550/arxiv.2303.03633,"This work was supported by JST CREST (Grant Number JPMJCR1689), JST AIP-PRISM (Grant Number JPMJCR18Y4), JSPS Grant-in-Aid for Scientific Research on Innovative Areas (Grant Number JP18H04908), and JSPS KAKENHI (Grant Number JP22K07681).",True,False,False acknowledgement,10.1101/2024.06.03.597199,doi10.1101/2024.06.03.597199,"Funding: This research was funded by Ministerio Ciencia e Innovacion (MCIN/AEI/10.13039/501100011033 ""ERDF A way of making Europe"", Spain) grant number PID2020-118821RB-I00, awarded to L.P. and B.J., and Consejeria de Ciencia, Universidades e In-novacion de la CAM (Madrid, Spain) reference PEJ-2021-AI/BMD-22698 awarded to B.J. and A.I.G-A.",True,False,False acknowledgement,10.48550/arxiv.1104.3246,doi10.48550/arxiv.1104.3246,"Nakagawa, Daiji Suzuki, and member of T-PRIMAL for their valuable comments. S.T. is partly supported by Grant-in-Aid for Young Scientists Start-up (21840021) from the JSPS, MEXT Grant-in-Aid for Scientific Research (B) (22340111), and the ""Open Research Center"" Project for Private Universities: matching fund subsidy from MEXT. R.T. is partly supported by Global COE Program ""the Physical Sciences Frontier"", MEXT, Japan. The computation in the present work was performed on computers at the Supercomputer Center, Institute for Solid State Physics and University of Tokyo and at Taisuke Sato's group, Tokyo Institute of Technology.",True,False,False acknowledgement,10.48550/arxiv.2106.04031,doi10.48550/arxiv.2106.04031,"R. Konda (rkonda@ucsb.edu), R. Chandan, D. Grimsman and J. R. Marden are with the Department of Electrical and Computer Engineering at the University of California, Santa Barbara, CA. This work is supported by ONR Grant #N00014-20-1-2359 and AFOSR Grant #FA9550-20-1-0054.",True,False,False acknowledgement,10.48550/arxiv.1801.10190,doi10.48550/arxiv.1801.10190,"The work of K. Cumanan and A. G. Burr was supported by H2020- MSCA-RISE-2015 under grant number 690750. In addition, the work on which this paper is based was carried out in collaboration with COST Action CA15104 (IRACON).",True,False,False acknowledgement,10.21203/rs.2.15245/v2,doi10.21203/rs.2.15245/v2,This study was supported by the National Basic Research Program of China (Grant No. 2012CB517901) and the National Natural Science Foundation of China (Grant No. 81974217\No.81601197).,True,False,False acknowledgement,10.1101/2020.09.28.20203075,doi10.1101/2020.09.28.20203075,"Dr. Wei Lin is supported by the National Key R&D Program of China (Grant no. 2018YFC0116600), the National Natural Science Foundation of China (Grant no. 11925103), and by the STCSM (Grant no. 18DZ1201000). The authors thank Sara Barton for editing the manuscript and the Texas Advanced Computing Center for computation support.",True,False,False acknowledgement,10.48550/arxiv.1805.05203,doi10.48550/arxiv.1805.05203,Research partially supported by NSF grant and DMS-1541126 and by the Stefan Bergman trust,True,False,False acknowledgement,10.21203/rs.3.rs-951034/v1,doi10.21203/rs.3.rs-951034/v1,"This work has been supported by the Guangdong Major Project of Basic and Applied Basic Research (2020B0301030004) and the National Natural Science Foundation of China (grants 4210050250, 42075015, 41875114).",True,False,False acknowledgement,10.48550/arxiv.1807.08358,doi10.48550/arxiv.1807.08358,"The first author was supported in part by Grant No. 96050219 from School of Mathematics, Institute for Research in Fundamental Sciences (IPM). The first author was additionally financially supported by the Center of Excellence for Mathematics at the University of Isfahan.",True,False,False acknowledgement,10.26434/chemrxiv-2022-bphpr,doi10.26434/chemrxiv-2022-bphpr,"This work was authored in part by the National Renewable Energy Laboratory (NREL), operated by Alliance for Sustainable Energy, LLC, for the U.S. Department of Energy (DOE) under Contract No. DE-AC36-08GO28308. Funding provided by the U.S. Department of Energy's Vehicle Technologies Office (VTO) under the Silicon Consortium Project directed by Brian Cunningham and managed by Anthony Burrell. Project conception, chemical synthesis, LIB fabrication and characterization were conducted at NREL. TEM and EDS mapping data were conducted at PNNL. SEM, EDS mapping, and XPS data were collected and analyzed at URI. The LFP electrode used in this manuscript are from Argonne's Cell Analysis, Modeling and Prototyping (CAMP) Facility, which is fully supported by the DOE VTO. The views expressed in the article do not necessarily represent the views of the DOE or the U.S. Government. The U.S. Government retains and the publisher, by accepting the article for publication, acknowledges that the U.S. Government retains a nonexclusive, paid-up, irrevocable, worldwide license to publish or reproduce the published form of this work, or allow others to do so, for U.S. Government purposes.",True,True,False acknowledgement,10.48550/arxiv.2210.08622,doi10.48550/arxiv.2210.08622,The author is supported by an NSF Postdoctoral Research Fellowship (DMS-2303242).,True,False,False acknowledgement,10.1101/692038,doi10.1101/692038,Acknowledgments—This work was supported by the Engineering and Physical Sciences Research Council grant EP/R020205/1 to Alain Goriely and by the National Science Foundation grant CMMI 1727268 to Ellen Kuhl. A.G. gratefully acknowledges a discussion with Tuomas Knowles.,True,False,False acknowledgement,10.48550/arxiv.2108.13913,doi10.48550/arxiv.2108.13913,"*We gratefully acknowledge partial support from the projects MEGABIT – Università degli Studi di Catania, PIAno di inCEntivi per la RIcerca di Ateneo 2020/2022 (PIACERI), Linea di intervento 2.",True,False,False acknowledgement,10.48550/arxiv.2106.00215,doi10.48550/arxiv.2106.00215,"Acknowledgments. This work is supported in part by the Army Research Office (ARO) under the SLICE Multidisciplinary University Research Initiatives (MURI) Program, award W911NF1810327, and in part by ONR grant N00014-16-1-2817, a Vannevar Bush Faculty Fellowship held by the second author, sponsored by the Basic Research Office of the Assistant Secretary of Defense for Research and Engineering. The authors gratefully acknowledge helpful conversations with Yuliy Baryshnikov, William Clark, George Council, Timothy Greco, Rohit Gupta, and Eugene Lerman. We owe special gratitude to Clark for carefully reading the manuscript and making suggestions which improved its quality, and to Gupta for bringing relevant references to our attention. Finally, we thank the two anonymous referees for useful suggestions.",True,False,False acknowledgement,10.1101/2021.10.13.464276,doi10.1101/2021.10.13.464276,"We are grateful to Volker Staiger for cell tracing as well as technical support, to Michael Myoga for helping to build one in vitro setup and to Pieter Goltstein for software. This study was supported by the Max Planck Society and the German Research Foundation (DFG, the Collaborative Research Center SFB870_A08, reference number 118803580; V.S. and M.H.).",True,False,True acknowledgement,10.48550/arxiv.1704.07549,doi10.48550/arxiv.1704.07549,Acknowledgements: This project is supported by the National Natural Science Foundation of China (No.11671350 and No.11571173).,True,False,False acknowledgement,10.1101/2024.05.10.24307165,doi10.1101/2024.05.10.24307165,"This research was supported by AMS Springboard (SBF007\100077) to JJ. AAH has received funding from the Medical Research Council, UK (Grant MR/T005580/1) and National Institute of Health/NIA, USA (Grant 1R56AG074467-01). She has received honoraria from Biogen, Eisai, and Lilly for advisory consultations and teaching related to Alzheimer's disease.",True,False,False acknowledgement,10.1101/212985,doi10.1101/212985,"This work was supported by grants and fellowships from the National Health and Medical Research Council of Australia (G.S. #1058892, L. H. and N.B. #1037321, #1129033, #1080887, A.L. and G.S. #1054618, R.A. and T.J. #1049307, #1100451, T.J. #1124081) and the Australian Research Council (R.A. #130100541). This study was made possible through Victorian State Government Operational Infrastructure Support and Australian Government NHMRC Independent Research Institute Infrastructure Support scheme.",True,False,False acknowledgement,10.21203/rs.3.rs-5105732/v1,doi10.21203/rs.3.rs-5105732/v1,"The authors acknowledge UNAB and ANID/CONICYT Ph.D. scholarships awarded to C. G. and L. A.-H., respectively. We also are indebted to the Fondo Nacional de Ciencia y Tecnología (FONDECYT-ANID, Chile) for the continuous financial and academic support provided through Project Nos. 1221383 (PP), and 1181582 and 1231018 (EC).",True,False,False acknowledgement,10.48550/arxiv.1806.11530,doi10.48550/arxiv.1806.11530,"This research was supported by several sources, via grants to the senior author, for which the authors are grateful: Air Force Office of Scientific Research USA (FA9550-18-1-0054), Office of Naval Research USA (N00178-16-P-0087), the Canada Research Chairs Program (950-231659), and the Natural Sciences and Engineering Research Council of Canada (RGPIN-2016-05352), and the NSERC Canadian Field Robotics Network (NETGP-417354-11).",True,False,False acknowledgement,10.48550/arxiv.1305.5344,doi10.48550/arxiv.1305.5344,"This author's work was supported by the Hong Kong Research Grant Council (Grant No. PolyU 501909, 502510, 502111 and 501212). | This author's work was done when visiting The Hong Kong Polutechnic University and supported by Jiangsu NSF (No.).",True,False,False acknowledgement,10.21203/rs.3.rs-3935004/v1,doi10.21203/rs.3.rs-3935004/v1,"Funding: The study received partial funding from Novartis Pharma, Germany.",True,False,False acknowledgement,10.21203/rs.3.rs-94679/v1,doi10.21203/rs.3.rs-94679/v1,"M.J.M and A.M.S are PostDoc fellows of the AstraZeneca R&D PostDoc Program. G.O is a member of the AstraZeneca R&D graduate programme. This work was conducted within the Industrial Research Centre, FoRmulaEx-Nucleotide Functional Drug Delivery, and with associated financial support to E.K.E from the Swedish Foundation for Strategic Research (SSF, grant No. IRC15-0065). We thank Erik Oude Blenke for the formulation of β-sitosterol containing LNPs.",True,False,False acknowledgement,10.31234/osf.io/r7asu,doi10.31234/osf.io/r7asu,Acknowledgements: This research was funded by ERC grant KINSHIP awarded to LMD.,True,False,False acknowledgement,10.48550/arxiv.1203.0788,doi10.48550/arxiv.1203.0788,"This work has been performed in Knowledge Space Lab project, a Strategiefonds project of the Royal Netherlands Academy of Arts and Sciences (KNAW). The data processing has been performed in collaboration with BigGrid-NL, based on a grant of NWO (project ""Emergence of category systems in knowledge spaces - the WIKI case""). We would like to thank in particular Tom Visser, Coen Schrijvers and Ammar Benabadelkader from the BigGrid team for their support. This research has been also supported by the COST action network MP0801 ""Physics of competition and conflicts"".",True,True,False acknowledgement,10.21203/rs.3.rs-21842/v3,doi10.21203/rs.3.rs-21842/v3,"This study was supported by The National Key Research and Development Program of China (2018YFD1000800), the National Natural Science Foundation of China (31722006) and Key Research Program of Fujian Province (2018NZ0002).",True,False,False acknowledgement,10.1101/2022.10.07.511352,doi10.1101/2022.10.07.511352,"This work was supported by NSF grant (DMS-1854770) of Dr. Arsuaga, NIH R01 (NS083702) of Dr. Luo, and R34 (NS118411) of Drs. Ding and Luo.",True,False,False acknowledgement,10.1101/2023.10.13.23297016,doi10.1101/2023.10.13.23297016,Acknowledgments: This work was supported by funding from the Austrian Science Fund-FWF (Grant No. P34783). No funding sources had any role in the writing of the manuscript or the decision to submit.,True,False,False acknowledgement,10.1101/867531,doi10.1101/867531,"BMN and TBHG were supported by Aidsfonds (P-11118), European Research Council, Advanced grant (670424). BML is supported by the Indonesian Endowment Fund for Education (grant no. 20150822023688). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.",True,False,False acknowledgement,10.21203/rs.3.rs-318924/v1,doi10.21203/rs.3.rs-318924/v1,"Funding This research was financially supported by the Internal Grant Agency of the Faculty of Tropical AgriSciences, Czech University of Life Sciences Prague, IGA (Project No. 20205006), and the institutional project of the Crop Research Institute (MZE-R00418). BP gratefully acknowledges the Gene Bank CGIAR Research Programme and the CGIAR Research Programme on Roots, Tubers, and Bananas (RTB), and the Directorate-General for Development, Belgium (DGD) for financial support of the project 'Safeguarding vegetatively-propagated crop diversity to nourish people now and in the future'.",True,False,False acknowledgement,10.21203/rs.3.rs-1471307/v1,doi10.21203/rs.3.rs-1471307/v1,"We thank the funding support from Michigan Soybean Promotion Committee, USDA National Institute of Food and Agriculture (Hatch project 1011788) and AgBioResearch at Michigan State University (Project No. MICL02013). We are also thankful to the Overseas Training Program for Young-Backbone Teachers of Hebei Agricultural University to WL. We are also thankful to University Grants Commission (UGC), India, for providing Raman Postdoctoral Fellowship (5-20/2016(IC)) to SHW. We also thank PJC, ZW, YB, RT, and SZ for their help in creating and maintaining the mapping populations.",True,False,False acknowledgement,10.21203/rs.3.rs-500450/v1,doi10.21203/rs.3.rs-500450/v1,"This work was supported by the National Natural Science Foundation of China (Nos. 61805129), the Science and Technology Project of Shanxi province (No.201801D221161).",True,False,False acknowledgement,10.1101/2022.08.30.505909,doi10.1101/2022.08.30.505909,"We thank Dr. Nathaniel Lim for the expansion of the DE prior ranking (manuscript in preparation), first generated in Crow et al. (2019). We also thank Dr. Marine Louarn, who has managed the update of the resource of curated regulatory interactions (Chu et al., 2021). This work was supported by National Institutes of Health grant MH111099 (https://www.nih.gov/) and Natural Sciences and Engineering Research Council of Canada grant RGPIN-2016-05991 (https://www.nserc-crsng.gc.ca/), both held by PP. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. AM had funding support from CIHR-CGS, NSERC CREATE, and IMH Marshall Scholars programs.",True,False,False acknowledgement,10.48550/arxiv.1108.5819,doi10.48550/arxiv.1108.5819,"Part of this work was supported by the Collaborative Research Project of Materials and Structures Laboratory of Tokyo Institute of Technology, and Grant-in-Aid for Scientific Research, MEXT, Japan.",True,False,False acknowledgement,10.21203/rs.3.rs-929800/v1,doi10.21203/rs.3.rs-929800/v1,"This research was supported by the National Natural Science Foundation of China (No. 52075058), Chongqing Graduate Scientific Research and Innovation Foundation (No. CYS21003) and the whole process green manufacturing process innovation and application project of large and complex aviation die forgings (No. 2018272106).",True,False,False acknowledgement,10.48550/arxiv.2006.15731,doi10.48550/arxiv.2006.15731,"Acknowledgements: We thank Piotr Koniusz and Lei Wang for sharing their implementation of Fisher vector encoding. This work was supported in part by the Inria associate team GAYA, and by the Intelligence Advanced Research Projects Activity (IARPA) via Department of Interior/Interior Business Center (DOI/IBC) contract number D17PC00345. The U.S. Government is authorized to reproduce and distribute reprints for Governmental purposes not withstanding any copyright annotation theron. Disclaimer: The views and conclusions contained herein are those of the authors and should not be interpreted as necessarily representing the official policies or endorsements, either expressed or implied of IARPA, DOI/IBC or the U.S. Government.",True,False,False acknowledgement,10.48550/arxiv.1306.2886,doi10.48550/arxiv.1306.2886,The first author is supported by NSF grant DMS-0649473 and by a Simons Investigator Award. The second author is supported by ISF grant 407/12. The second author was on sabbatical at Stanford at the time this work was carried out; she would like to thank the Stanford math department for its hospitality and support.,True,False,False acknowledgement,10.1101/2020.04.16.044321,doi10.1101/2020.04.16.044321,"The authors would like to thank Sabrina Linden (University of Bonn, Germany) for technical assistance. Financial support by the University of Bonn is gratefully acknowledged.",True,False,False acknowledgement,10.48550/arxiv.2308.00841,doi10.48550/arxiv.2308.00841,"The work at the University of Houston was funded in part by the National Science Foundation (CHE-2102506) and the Robert A. Welch Foundation (E-1337). The work at Los Alamos National Laboratory was funded by the Laboratory Directed Research and Development (LDRD) programme, 20220047DR. The work at Georgia Tech was funded by the National Science Foundation (DMR-1904293).",True,False,False acknowledgement,10.21203/rs.3.rs-2063612/v2,doi10.21203/rs.3.rs-2063612/v2,"Much of the work presented in this paper was supported by the National Natural Science Foundation of China (41907259), Research Center of Rock-Soil Drilling & Excavation and Protection (202208, 220215) and Scientific Foundation of Hubei Provincial Education Department (Q20202701).",True,False,False acknowledgement,10.21203/rs.3.rs-3492242/v1,doi10.21203/rs.3.rs-3492242/v1,"This study is supported by the NIH R01 DK123733 to M.A-M, A.L, and A.K and the NIH R01AA029859 to A.K and M.A-M. Additional support was provided by the R24AA026801 to A.K and R01AG062383, R01AG062383-04S1, R01NS117458, R01AI165079, and R21AI170166 to M.A-M. M.A-M is also funded by Penn Center for AIDS Research (P30 AI 045008) and the NIH-funded BEAT-HIV Martin Delaney Collaboratory to cure HIV-1 infection (1UM1AI126620). The Wistar Proteomics and Metabolomics Shared Resource is supported in part by NIH Cancer Center Support Grant CA010815. The Thermo Q-Exactive HF-X mass spectrometer was purchased with NIH grant S10 OD023586. This research was also supported in part by philanthropic funding from Mr. and Mrs. Larry Field, Mr. and Mrs. Glass, Mrs. Marcia and Mr. Silas Keehn, the Sklar Family, the Johnson Family, and Mr. Harlan Berk to A.K.",True,False,False acknowledgement,10.48550/arxiv.1009.2327,doi10.48550/arxiv.1009.2327,"This work was funded by the Deutsche Forschungsgemeinschaft. Access to the GHMFL through the European Commission Program (""Transnational Access - Specific Support Action"" Program - Contract n° RITA-CT-2003-505474) is acknowledged.",True,False,False acknowledgement,10.48550/arxiv.2409.12287,doi10.48550/arxiv.2409.12287,"This work was supported by the Department of Energy under grant no. DE-SC0022389. | This work was supported by the U.S. Department of Energy, Office of SBIR/STTR Programs under Award Number DE-SC0022389.",True,False,False acknowledgement,10.1101/2020.05.21.108894,doi10.1101/2020.05.21.108894,"This work was supported by: Wellcome Strategic Awards 091911/B/10/Z and 107457/Z/15/Z) to ID, a Wellcome Trust Senior Research Fellowship (081858) to ID; a Wellcome Investigator Award (209412/Z/17/Z) to ID; a John Fell Fund Award 141/020 to ID ; an EPSRC IAA grant EP/K503769/1 to MJB.",True,False,False acknowledgement,10.1101/2023.07.19.549808,doi10.1101/2023.07.19.549808,David Huepe is supported by an ANID/FONDECYT Regular (1231117) research grant. The content of this article is solely the responsibility of the authors and does not represent the official views of this institution.,True,False,False acknowledgement,10.21203/rs.3.rs-2533531/v1,doi10.21203/rs.3.rs-2533531/v1,"This work was supported by grants from the Natural Science Foundation of Guangdong Province (2022A1515012103), and the National Natural Science Foundation of China (81870222, 32070813).",True,False,False acknowledgement,10.48550/arxiv.2310.07245,doi10.48550/arxiv.2310.07245,This publication was made possible by the PDRA award PDRA7-060621012 from the Qatar National Research Fund (a member of The Qatar Foundation) and Qatar University Internal Grant No. IRCC-2023-237. The statements made herein are solely the responsibility of the authors.,True,False,False acknowledgement,10.1101/825695,doi10.1101/825695,This work has been funded by the Canada First Research Excellence Fund supported Plant Phenotyping and Imaging Research Centre (P2IRC).,True,False,False acknowledgement,10.48550/arxiv.2405.12111,doi10.48550/arxiv.2405.12111,"Acknowledgements. We gratefully acknowledge support from the National Agency for Research and Development (ANID) under the fellowship ANID Becas/Doctorado Nacional, #21220337 (LNMR-R), Millennium Science Initiative Program - ICN12_009 (LNM-R, FEB), CATA-BASAL - FB210003 (LNM-R, FEB), and FONDECYT Regular - #1200495 (LNM-R, FEB); the Vicerrectoría de Investigación of Pontificia Universidad Católica de Chile under the fellowship Stay of Doctoral Co-tutelage Abroad, leading to double degree; the Vicerrectoría de Investigación y Extensión de la Universidad Industrial de Santander under project 2494 (JCBP); and the Ministry of Science, Technological Development and Innovation of the Republic of Serbia, through contract No. 451-03-9/2024-14/200002 (MS). We thank Sebastian Höning, Paolo Padovani and Christine Done for useful comments, valuable discussions and suggestions on the implementation of CAT3D-WIND, KD18 and synchrotron emission models. We thank David W Hogg and Luis A. Núñez for their support during the initial phases of the project.",True,False,False acknowledgement,10.21203/rs.3.rs-2413412/v1,doi10.21203/rs.3.rs-2413412/v1,"Acknowledgements: This research was funded by Shandong Modern Agricultural Technology & Industry System, grant number SDAIT-21-06 Key Research and Development Program of Shandong Province(2022CXGC010606).",True,False,False acknowledgement,10.48550/arxiv.1111.5108,doi10.48550/arxiv.1111.5108,"This work was partially supported by the grants NSF CCF-0431150, CCF-0728867, CCF-0926127, CCF-1117939, ARO MURI W911NF-09-1-0383, W911NF-07-1-0185, DARPA N66001-11-1-4090, N66001-11-C-4092, N66001- 08-1-2065, AFOSR FA9550-09-1-0432, and LLNL B593154.",True,False,False acknowledgement,10.48550/arxiv.1610.07283,doi10.48550/arxiv.1610.07283,This work was supported by the National Science Foundation of China Grant (11401459) and the Natural Science Foundation of Shaanxi Province (2015JM1010).,True,False,False acknowledgement,10.48550/arxiv.2401.14285,doi10.48550/arxiv.2401.14285,"This work was supported by funding from the National Institutes of Health (NIH) under grant numbers R01EB025468, R01CA224140, and R01CA275188.",True,False,False acknowledgement,10.48550/arxiv.2404.14132,doi10.48550/arxiv.2404.14132,"*Corresponding author. † The first two authors contributed equally to this work. This work was partially supported by NSFC (62301432,62306240), NSBRPS (2023-JC-QN-0685, QCYRCXM-2023-057).",True,False,False acknowledgement,10.21203/rs.3.rs-1191974/v1,doi10.21203/rs.3.rs-1191974/v1,"This work was supported by the International Cooperation & Education Program (NCCRI•NCCI 52210-52211, 2020) of the National Cancer Center, Korea, and grants from the National Cancer Center, Korea (1910330) and National Research Foundation of Korea (2021R1A2C2008439).",True,False,False acknowledgement,10.1101/2023.09.22.559051,doi10.1101/2023.09.22.559051,This project was funded by National Institute of Mental Health (NIMH) grants R01MH123184 and R37MH057881.,True,False,False acknowledgement,10.1101/653808,doi10.1101/653808,"Japan Society for the Promotion of Science (JSPS) provided funding to Satoshi Taniguchi under grant numbers 15K21645 and 11J02534. JSPS provided funding to Masayuki Shimojima under grant number 16K08041. Japan Agency for Medical Research and Development (AMED) provided funding to Masayuki Saijo under grant numbers 19fk0108072j0002. | assistance. This research was supported by Grant-in-aids from the Japan Society for the Promotion of Science KAKENHI (15K21645, 11J02534, and 16K08041).",True,False,False acknowledgement,10.48550/arxiv.1112.2010,doi10.48550/arxiv.1112.2010,"We thank John Close, Andrew White and André Carvalho for enlightening discussions. This research was conducted by the Australian Research Council Centre of Excellence for Quantum Computation and Communication Technology (project number CE110001027) and Centre of Excellence for Engineered Quantum Systems (Project number CE110001013).",True,False,False acknowledgement,10.21203/rs.3.rs-850529/v1,doi10.21203/rs.3.rs-850529/v1,"This work was supported by the National Natural Science Foundation of China (No. 82071119, 82071142).",True,False,False acknowledgement,10.21203/rs.3.rs-50575/v2,doi10.21203/rs.3.rs-50575/v2,"This study was supported by the Guiding Project of Science and Technology Plan of the Science and Technology Bureau, Fujian province, China (2017D0016), by the Youth Research Fund from Fujian Provincial Health Bureau (Grant 2018-2-65), and the Fund from Natural Science Foundation of Fujian Province, China (Grant 2018J01393).",True,False,False acknowledgement,10.21203/rs.2.19567/v3,doi10.21203/rs.2.19567/v3,"The study was financially supported by the Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand (grant number 017/2562). The funding bodies had no role in the design of the study; the collection, analysis, and interpretation of data; or the writing of the manuscript.",True,False,False acknowledgement,10.48550/arxiv.1412.4409,doi10.48550/arxiv.1412.4409,"The work of OL and ADP was partially supported by the Deutsche Forschungsgemeinschaft under Grant LE 838/13. The work of RJS was partially supported by the Consolidated Grant ST/L000334/1 from the UK Science and Technology Facilities Council. This work was completed while RJS was visiting the Hausdorff Research Institute for Mathematics in Bonn during the 2014 Trimester Program ""Noncommutative Geometry and its Applications""; he would like to thank Alan Carey, Victor Gayral, Matthias Lesch, Walter van Suijlekom and Raimar Wulkenhaar for the invitation, and all the staff at HIM for the warm hospitality.",True,False,False acknowledgement,10.48550/arxiv.2405.14808,doi10.48550/arxiv.2405.14808,"This material is based in part upon work supported by the German Federal Ministry of Education and Research (BMBF): Tübingen AI Center, FKZ: 01IS18039B; by the Machine Learning Cluster of Excellence, EXC number 2064/1 – Project number 390727645; by a National Science Foundation award (#2306372); by a Swiss National Science Foundation award (#201009) and a Responsible AI grant by the Haslerstiftung. The usage of OpenAI credits are largely supported by the Tübingen AI Center.",True,False,False acknowledgement,10.48550/arxiv.2308.12968,doi10.48550/arxiv.2308.12968,"Acknowledgment. This study is supported under the RIE2020 Industry Alignment Fund Industry Collaboration Projects (IAF-ICP) Funding Initiative, as well as cash and in-kind contribution from the industry partner(s). It is also supported by Singapore MOE AcRF Tier 2 (MOET2EP20221-0001) and the NTU NAP Grant.",True,False,False acknowledgement,10.31234/osf.io/3j6v8,doi10.31234/osf.io/3j6v8,"This research was supported by the Swiss National Science Foundation under grant ""Eudaimonic emotions and the (meta-)philosophy of well-being"".",True,False,False acknowledgement,10.21203/rs.3.rs-23621/v3,doi10.21203/rs.3.rs-23621/v3,This work was supported by les Ministères de L'Enseignement Supérieur et de la Santé Publique de la République tunisienne and by NPRP grant #09-344-3-082 from the Qatar National Research Fund (a member of Qatar Foundation).,True,False,False acknowledgement,10.1101/2024.03.04.583351,doi10.1101/2024.03.04.583351,"Observatory (ForestGEO) Plot Project. This project was supported by a Webster Groves Nature Study Society (WGNSS) Bo Koster Scholarship to ACW, George Hayward Plant Biology Graduate Fellowship to ACW, Maxwell/Hanrahan Foundation Field Work Grant from the Missouri Botanical Garden to ACW, National Science Foundation grants DEB 1557094 and DEB 2240431 to JAM, the International Center for Advanced Renewable Energy and Sustainability (I-CARES) at Washington University in St. Louis, ForestGEO, Washington University in St. Louis' Provost's Office, and Tyson Research Center.",True,False,False acknowledgement,10.1101/2022.07.19.500689,doi10.1101/2022.07.19.500689,"We thank Jonathan Webber for flow sorting, Tal Arnon and Peter McGill (University of Oxford) for providing mice and Lynn Dustin (University of Oxford) for providing Daudi cells. Funding for this work was provided by the Wellcome Trust (211072/Z/18/Z), Cancer Research UK/Versus Arthritis (C70663/A29547), the Kennedy Trust for Rheumatology Research, and the US National Institutes of Health (HL118979). Flow cytometry and microscopy facilities were supported by the Kennedy Trust for Rheumatology Research through the Cell Dynamics Platform. We thank the Wolfson Imaging Centre Oxford for providing microscope facility support.",True,False,False acknowledgement,10.48550/arxiv.0805.3529,doi10.48550/arxiv.0805.3529,"*Work supported by the National Science Foundation under Grant DMS-0604056, by the ""ex-60%"" funds of the Universities of Padova and Verona, and by the INdAM-GNCS.",True,False,False acknowledgement,10.48550/arxiv.2311.07738,doi10.48550/arxiv.2311.07738,"*C.M.V.O., M.T.T.K., and B.F.T. were supported by MITRE's Financial Innovation Lab. E.R.C. was supported by the MITRE PhD Fellowship in Computational Finance within the Complex Systems Center at the University of Vermont.",True,False,False acknowledgement,10.48550/arxiv.2208.04825,doi10.48550/arxiv.2208.04825,"This work was supported in part by United States National Institutes of Health (NIH) grants EB008374, EB006733, and AG053867. Y. Huang was supported by the China Scholarship Council and the National Natural Science Foundation of China under Grant 6210011424.",True,False,False acknowledgement,10.1101/2023.08.31.555641,doi10.1101/2023.08.31.555641,"This work was supported by the (1) Startup funding for MM though Guangxi University. (2) National Natural Science Foundation of China (#32260333) to MM. (3) National Natural Science Foundation of China (#31860600) to JY for fieldwork. (4) Innovation Project of Guangxi Graduate Education (#YCBZ2021008) to TRM and CB for research work. These funding bodies played no role in the design of the study and collection, analysis, and interpretation of data or in the writing of the manuscript.",True,False,False acknowledgement,10.48550/arxiv.0708.4413,doi10.48550/arxiv.0708.4413,"Acknowledgements L. Cerrigone acknowledges the Smithsonian Astrophysical Observatory for funding through the SAO Predoctoral Fellowship Program. | This work is based in part on observations made with the Spitzer Space Telescope, operated by Jet Propulsion Laboratory under NASA contract 1407. | The Australia Telescope Compact Array is part of the Australia Telescope which is funded by the Commonwealth of Australia for operation as a National Facility managed by CSIRO.",True,False,False acknowledgement,10.32920/23596341,doi10.32920/23596341,"The author(s) disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: This research was funded by the National Institute of Mental Health (R21 MH122010; MPI Quinn and Voisin).",True,False,False acknowledgement,10.1101/2023.04.08.536116,doi10.1101/2023.04.08.536116,"The authors would like to acknowledge seminar invitations from the Massachusetts Institute of Technology, University of California, San Diego, Brown University, and the Innovative Genomics Institute (University of California, Berkeley), where iterations of the ideas in this manuscript were discussed. The authors acknowledge support from the National Institutes of Health grants R35GM136354 (M.D.S. and RMH) and R01AI168166 (M.D.S. and C.B.O.), R35GM147107 (R.F.G.), and the National Science Foundation's Division of Environmental Biology Award Number 2142719 (C.B.O.). The authors would also like to thank the Martin Luther King Jr Visiting Professors and Scholars Program at the Massachusetts Institute of Technology for support (C.B.O.). The authors would like to thank the organizers and participants in the 2022 workshop entitled ""Reimagining the Central Dogma"" at The Foundations Institute, University of California, Santa Barbara, where ideas related to those covered in this manuscript were discussed. Lastly, the authors would like to thank K. Kabengele and S. Scarpino for helpful feedback on the manuscript.",True,False,True acknowledgement,10.48550/arxiv.2402.06308,doi10.48550/arxiv.2402.06308,"The present research is part of the activities of ""Dipartimento di Eccellenza 2023-2027"", MUR, Italy, Dipartimento di Matematica, Politecnico di Milano. R. Piersanti and L. Dede' have received support from the project PRIN2022, MUR, Italy, 2023-2025, 202232A8AN ""Computational modeling of the heart: from efficient numerical solvers to cardiac digital twins"". F. Regazzoni has received support from the project PRIN2022, MUR, Italy, 2023-2025, P2022N5ZNP ""SIDDMs: shape-informed data-driven models for parametrized PDEs, with application to computational cardiology"". The authors acknowledge their membership to INdAM GNCS - Gruppo Nazionale per il Calcolo Scientifico (National Group for Scientific Computing, Italy). This project has been partially supported by the INdAM-GNCS Project CUP E53C22001930001.",True,False,False acknowledgement,10.48550/arxiv.2106.14974,doi10.48550/arxiv.2106.14974,"We acknowledge technical support from P. Sénat, D. Duet, P.-F. Orfila and S. Delprat, and are grateful for fruitful discussions within the Quantronics group. We acknowledge IARPA and Lincoln Labs for providing the Josephson Traveling-Wave Parametric Amplifier. Funding: This project has received funding from the European Union's Horizon 2020 research and innovation program under Marie Sklodowska-Curie Grant Agreement No. 765267 (QuSCO) and No. 792727 (SMERC). E.F. acknowledges support from the ANR grant DARKWADOR:ANR-19-CE47-0004. We acknowledge support from the Agence Nationale de la Recherche (ANR) through the Chaire Industrielle NASNIQ under contract ANR-17-CHIN-0001 cofunded by Atos and through the project MIRESPIN under contract ANR-19-CE47-0011, and of the Region Ile-de-France through the DIM SIRTEQ (REIMIC project). This work was supported by the ANR-Hong Kong RGC Joint Scheme (ANR- 17-CHIN-0001 and A-CUHK403/15). S.L. was supported by the Impact Postdoctoral Fellowship of CUHK. S.B. thanks the support of the CNRS research infrastructure RENARD (FR 3443).",True,False,False acknowledgement,10.26434/chemrxiv-2023-3dfw6,doi10.26434/chemrxiv-2023-3dfw6,"S. C. S and J. B. contributed equally to this work. The authors acknowledge financial support from the Engineering and Physical Sciences Research Council (EPSRC) (EP/M0138/1, EP/M013812/1 and EP/S023259/1), the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement no. 866402) and the National Research Council of Canada through the Materials for Clean Fuels Challenge Program. S. C. S. acknowledges Marie Skłodowska-Curie Fellowship | H2020-MSCA-IF-2019 (896637). A. P. thanks supports from the EPSRC Centre for Doctoral Training in the Advanced Characterisation of Materials (grant number EP/L015277/1), and the Imperial College London SPIN-Lab (equipment grant number: EP/P030548/1) with Dr. Irena Nevjestic (equipment grant number: EP/P030548/1) and Surface Analysis Lab with Dr. Sarah Fearn. Maria-Magdalena Titirici acknowledges the Royal Academy of Engineering Chair in Emerging Technologies Fellowship. A.B acknowledges support from the Carlsberg Foundation (grant number CF21-0114).",True,True,False acknowledgement,10.1101/2022.12.06.519362,doi10.1101/2022.12.06.519362,"Y. Yang's laboratory was supported by the National Natural Science Foundation of China (Grant: 81874301), the Fundamental Research Funds for Central University (Grant: DUT22YG122) and the Key Research project of 'be Recruited and be in Command' in Liaoning Province (Personal Target Discovery for Metabolic Diseases).",True,False,False acknowledgement,10.46855/energy-proceedings-10511,doi10.46855/energy-proceedings-10511,This study is supported by the National Natural Science Foundation of China (72140002).,True,False,False acknowledgement,10.48550/arxiv.2112.04846,doi10.48550/arxiv.2112.04846,Acknowledgements. This project was supported by Chist-Era EPSRC IPALM EP/S032398/1 grant.,True,False,False acknowledgement,10.21203/rs.3.rs-584267/v1,doi10.21203/rs.3.rs-584267/v1,Funding: This study was supported by the National Institute of Aging (NIA) from NIH grant (AG064338-01) to S.K.P.,True,False,False acknowledgement,10.48550/arxiv.1902.06862,doi10.48550/arxiv.1902.06862,"The authors would like to thank Pratik Chaudari for valuable conversations as well as funding by NSF Grant No. DGE-1321851 and the Intel Science and Technology Center for Wireless Autonomous Systems. Any opinions, findings, and conclusions do not necessarily reflect the views of the NSF.",True,False,False acknowledgement,10.1101/2023.05.04.539504,doi10.1101/2023.05.04.539504,"J.D.H. acknowledges the support of the National Science Foundation. N.S.G. acknowledges financial support from the Foundation for Food and Agriculture Research (FFAR) Fellows program. We acknowledge support of the IGI LGR ERA, GlaxoSmithKline, and Citris/Banatao Seed Funding. We acknowledge support of a Burroughs Wellcome Fund Career Award at the Scientific Interface (CASI) (to M.P.L.), a Dreyfus foundation award (to M.P.L.), an NIH MIRA award (to M.P.L.), an NSF CAREER award (to M.P.L), an NSF CGEM award (to M.P.L.), a FFAR Young Investigator award (to M.P.L.), a CZI investigator award (to M.P.L), a Sloan Foundation Award (to M.P.L.), a and Moore Foundation Award (to M.P.L.). M.P.L. is a Chan Zuckerberg Biohub investigator, a Hellen Wills Neuroscience Institute Investigator, and an IGI Investigator. R.L.P. acknowledges support from the Schmidt Science Fellows program, in partnership with the Rhodes Trust. Efforts to apply XSI for studying ssDNA on SWCNTs are supported in part by National Cancer Institute grants Structural Biology of DNA Repair (SBDR) CA092584 and CA220430. XSI data was collected at the Advanced Light Source (ALS) beamline SIBYLS which is supported by the DOE-BER IDAT DE-AC02-05CH11231 and NIGMS ALS-ENABLE (P30 GM124169 and S10OD018483). This work benefited from the use of the SasView application, originally developed under NSF award DMR- 0520547. SasView contains code developed with funding from the European Union's | Horizon 2020 research and innovation program under the SINE2020 project, grant agreement No 654000. We thank the staff at the University of California, Berkeley Electron Microscope Laboratory for advice and assistance in electron microscopy sample preparation and data collection. Additional electron microscopy was conducted at the National Center for Electron Microscopy at the Molecular Foundry, Lawrence Berkeley National Laboratory. Work at the Molecular Foundry was supported by the Office of Science, Office of Basic Energy Sciences, of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Molecular graphics and analyses performed with UCSF Chimera, developed by the Resource for Biocomputing, Visualization, and Informatics at the University of California, San Francisco, with support from NIH P41GM103311. We would like to acknowledge the use of medical clipart from BioRender.com. Thank you to Dr. Daniel Murray, Dr. Lee Joon Kim, Dr. Abraham Beyene, Dr. James Holton, Dr. Andrew Crothers, and Dr. Michal Hammel for their helpful feedback and editing of this manuscript. Thank you to Brandon Russel for enabling remote modeling operations. Thank you to Elizabeth Voke for making this long-distance project possible by always being ready to send images of written lab notebooks during the manuscript writing process.",True,True,False acknowledgement,10.21203/rs.3.rs-3776843/v1,doi10.21203/rs.3.rs-3776843/v1,Acknowledgments We acknowledge the funding support from the National Natural Science Foundation of China (Grant No. 52174088). The authors would like to thank the anonymous reviewers and editors for their constructive suggestions which greatly improve the quality of this paper. | Funding This research received no external funding.,True,False,False acknowledgement,10.1101/2021.03.31.437891,doi10.1101/2021.03.31.437891,"This work was supported by pump-prime funding from ANTI-VeC (AV-PP20), a BBSRC/GCRF Network Grant. We are extremely grateful to Helen Williams and members of the Liverpool Insect Testing Establishment (LITE), in particular James Court and Amy Guy, and their expertise in rearing large populations of An. funestus colonies, which made this project a lot easier than it could have been. Matt Craske provided excellent technical assistance in the breeding of transgenic lines. We are also grateful to Leon Mugenzi, Andrew Hammond, Linta Grigoraki and Kyros Kyrou for helpful discussions on initial optimisation of injection technique and DNA cloning protocols.",True,False,False acknowledgement,10.26434/chemrxiv-2022-nb9q9,doi10.26434/chemrxiv-2022-nb9q9,"This research was supported by the Institute for Quantum Matter, an Energy Frontier Research Center funded by the U.S. Department of Energy (DOE), Office of Science, Basic Energy Sciences under Award No. DE-SC0019331. The single crystal diffraction work at Weiwei Xie's group was supported by U.S. DOE-BES under Contract DE-SC0022156.",True,False,False acknowledgement,10.26434/chemrxiv-2022-vgr23,doi10.26434/chemrxiv-2022-vgr23,"We are very grateful to Dr. Maxime Vitale and Dr. Laurence Grimaud (Ecole Normale Supérieure, Paris) for very helpful discussion and their help in the recording of the cyclic voltammetry study. ST thanks the China Scholarship Council (CSC) for her PhD fellowship. We also gratefully acknowledge the ANR (ANR-20-CE07-0020; ""ELMER""), the Université Paris-Saclay and the CNRS for financial support.",True,False,False acknowledgement,10.48550/arxiv.1411.5143,doi10.48550/arxiv.1411.5143,"This work was carried out when LR was with the Institute for Computational and Applied Mathematics, WWU Münster. MB and RE acknowledge partial support by the German Science Foundation (DFG) via SFB 656, Subproject B2, and Cells-in-Motion Cluster of Excellence (EXC 1003 - CiM), WWU Münster, Germany.",True,False,False acknowledgement,10.21203/rs.3.rs-4004841/v1,doi10.21203/rs.3.rs-4004841/v1,"The authors would like to acknowledge CNPq (309080/2015-0 and 434955/2018-3), FAPERJ (E-26/203.001/2017, E-26/010.101118/2018, and E-26010.001424/2019), and the CAPES PRINT Program (88881.310460/2018-01) for financial support. Milena D. Lessa was supported by a research fellowship from the MIDAS INCT.",True,False,False acknowledgement,10.1101/2023.11.29.569211,doi10.1101/2023.11.29.569211,"This study was supported by the Institut Polaire Français Paul-Emile Victor (IPEV) within the framework of the Program 137-ANTAVIA (PI: CLB), by the Centre Scientifique de Monaco with additional support from the LIA-647 and RTPI-NUTRESS (CSM/CNRS-UNISTRA), by the Centre National de la Recherche Scientifique (CNRS) through the Programme Zone Atelier de Recherches sur l'Environnement Antarctique et Subantarctique (ZATA). The study was approved by the French ethics committee (last: APAFIS#29338-2020070210516365) and the French Polar Environmental Committee, and permits to handle animals and access breeding sites were delivered by the ""Terres Australes et Antarctiques Françaises"" (TAAF). JRP is supported by funding from the European Union's Horizon Europe research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 101068395 - 'Poly2Adapt'. SG was supported by PNRA16_00099 and PNRA16_00234. ET was supported by PNRA_16 00164 (""Programma Nazionale di Ricerca in Antartide"". Bando PNRA 5 aprile 2016, n. 651. – Linea B ""Genomica degli adattamenti estremi alla vita in Antartide""). Bioinformatic analyses were performed on the HPC clusters at the Department of Life and Environmental Sciences (""HappyComputing@DiSVA""), Marche Polytechnic University, and the Department of Life Sciences and Biotechnology, University of Ferrara.",True,True,False acknowledgement,10.1101/2023.05.03.539215,doi10.1101/2023.05.03.539215,Alcoa Foundation funded development of this methodology and part of RVL's time. RVL's time was also funded by University of Queensland through a strategic grant. Data and results can be accessed through The University of Queensland's e-space.,True,True,False acknowledgement,10.1101/2020.08.20.260083,doi10.1101/2020.08.20.260083,"Acknowledgements: The authors gratefully acknowledge support from the National Institute of Neurological Disorders and Stroke (R01NS092597 to M.M, K12NS098482-02 to J.K.K., R01NS034774 to J.H.), NIH Director's Pioneer Award (DP1NS111132 to M.M.), Kleberg Foundation, Stanford Maternal and Child Health Research Institute (to M.M. and J.K.K.), Bio-X Institute (to M.M. and J.K.K.), Cancer Research UK (to M.M.), American Epilepsy Society and CURE Epilepsy Foundation (to J.K.K.). The authors wish to thank Michelle Fogerson, Jordan Sorokin, Austin Reese and Christopher Makinson for their guidance on performing and analyzing rodent EEG. The authors also thank Dr. Steve Chinn at Stanford Children's Health for his assistance with ethosuximide experiments.",True,False,False acknowledgement,10.1101/2023.12.04.23299287,doi10.1101/2023.12.04.23299287,"This study was funded and supported by Associazione Italiana per la Ricerca sul Cancro (AIRC IG 20541). | This work was supported by the Myeloma Solutions Fund (MSF), Paula and Rodger Riney Multiple Myeloma Research Program Fund, the Tow Foundation, Sylvester Comprehensive Cancer Center NCI Core Grant (P30 CA 240139). | FM is supported by the American Society of Hematology (ASH), Leukemia & Lymphoma Society (LLS), and by International Myeloma Society (IMS). | N.B. Is supported by the Associazione Italiana per la Ricerca sul Cancro (AIRC Investigator Grant n. 25739) and by the European Research Council under the European Union’s Horizon 2020 research and innovation program (grant agreement No. 817997)",True,False,False acknowledgement,10.48550/arxiv.2103.05452,doi10.48550/arxiv.2103.05452,"The research was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) — 380258175. The research was also partially conducted in the framework of the DFG-funded research training group ""GRK 2240: Algebro-Geometric Methods in Algebra, Arithmetic and Topology"".",True,False,False acknowledgement,10.21203/rs.3.rs-2328718/v1,doi10.21203/rs.3.rs-2328718/v1,This study was supported by the Guangdong Science and Technology Program (2019B21201005) and the NSFC-Guangdong Province Union Funds (U1701246). We thank the reviewers for their nice and considerate comments on our manuscript.,True,False,False acknowledgement,10.21203/rs.3.rs-3831337/v1,doi10.21203/rs.3.rs-3831337/v1,"We would like to express our gratitude to all the individuals and organizations that have contributed to this study. We appreciate the expertise and guidance provided by our colleagues and reviewers who have contributed to the development of this study. This work was supported by the Environment Research and Technology Development Fund (grant number: JP-MEERF20224003), the 2023 Sophia University Young Researchers (PJPD) Research Fund (project title: Application of citizean science data in conservation and utility of national parks), and 2022 Nanjing Science and Technology Innovation Project for Excellent Overseas Students (grant number: 51211039).",True,True,False acknowledgement,10.48550/arxiv.2108.11577,doi10.48550/arxiv.2108.11577,"We thank Önder Askin for proofreading and valuable comments. This work was funded by the German Federal Ministry of Education and Research (BMBF) under the projects BI-FOLD (FKZ01IS18025B) and DataChainSec (FKZ16KIS1700). Furthermore, the authors acknowledge funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy EXC 2092 CASA-390781972 and by the Helmholtz Association (HGF) within topic ""46.23 Engineering Secure Systems"".",True,False,False acknowledgement,10.48550/arxiv.2101.05990,doi10.48550/arxiv.2101.05990,The author would like to thank Kazuhiro Sakai for useful discussions. This work was supported in part by JSPS KAKENHI Grant No. 19K03845.,True,False,False acknowledgement,10.1002/essoar.10511227.1,doi10.1002/essoar.10511227.1,"M.N. enjoyed fruitful and constructive discussions with Jong-Sun Park and Timo Pitkänen, and was supported by a grant of the National Natural Science Foundation of China (NSFC 42074194). Y.M. was supported by Korea Astronomy and Space Science Institute under the R&D program (2022-1-850-09) supervised by the Ministry of Science and ICT. N.P. was supported by the Norwegian Research Council (NRC) under CoE contract 223252. Q.Q.S. was supported by NSFC 41731068, 41961130382, and 41974189, and also supported from International Space Science Institute, Beijing (ISSI-BJ). We thank George K. Parks for providing the Polar UVI data and Kan Liou for processing the data.",True,True,False acknowledgement,10.48550/arxiv.1912.03786,doi10.48550/arxiv.1912.03786,This work was supported in part by NSERC of Canada.,True,False,False acknowledgement,10.1101/2021.05.25.445646,doi10.1101/2021.05.25.445646,"This research was supported by the Hungarian National Research, Development and Innovation Office grants NK-104481 and K-134370 to I.K. and K-128117 to B.R. and by the Higher Education Institutional Excellence Program of the Ministry of Human Capacities in Hungary within the framework of the neurology thematic program of Semmelweis University.",True,False,True acknowledgement,10.21203/rs.3.rs-1773793/v1,doi10.21203/rs.3.rs-1773793/v1,"This work was supported by Collaborative Research Fund (Ref: C4032-21GF), Group Research Scheme (Ref: 3110146) and Health Care and Promotion Scheme (Ref: 02180118).",True,False,False acknowledgement,10.1101/2022.08.24.505151,doi10.1101/2022.08.24.505151,"strains were provided by the CGC, which is funded by NIH Office of Research Infrastructure Programs (P40 OD010440). N. Macaisne was supported by an ANR contract (grant ANR-19- CE13-0015), L. Bellutti was supported by a post-doctoral fellowship from the Fondation pour la Recherche Médicale (FRM). This work was supported by CNRS and University Paris Cité, by NIH R01GM117407 and R01GM130764 (JC. Canman), and by grants from the European Research Council consolidator grant (ERC-CoG) ChromoSOMe grant 819179 and from the Agence Nationale de la Recherche ANR-19-CE13-0015 (J. Dumont).",True,False,False acknowledgement,10.48550/arxiv.2103.08252,doi10.48550/arxiv.2103.08252,The second author was supported by the Austrian Science Fund FWF grants P 30405 and P 34180. We thank Audie Warren for his helpful comments.,True,False,False acknowledgement,10.1101/2022.06.17.496451,doi10.1101/2022.06.17.496451,"the Zebrafish Brain Browser and mapZebrain atlases. This work was supported by funding from the ATIP-Avenir program of the CNRS and Inserm (O.R.), a Fondation Fyssen research grant (O.R.), the IDEX-Impulsion initiative of the University of Lyon (O.R.), the NIH RO1 grants MH109498 (M.G.), NS123887 (M.H.), and the NIH Brain Initiative grants U19NS104653, R24 NS086601, and R43OD024879, as well as Simons Foundation grants SCGB nos. 542973 and 325207 (F.E.)",True,False,False acknowledgement,10.1101/2021.07.06.451263,doi10.1101/2021.07.06.451263,"This work was supported in part by Institutional Research Grant number 14-189-19 from the American Cancer Society, and NIH grant R01-DE030493 (to X.W.). This work has also been supported by the Biostatistics and Bioinformatics Shared Resource at the H. Lee Moffitt Cancer Center & Research Institute, an NCI designated comprehensive cancer center (P30-CA076292).",True,False,False acknowledgement,10.48550/arxiv.2209.15321,doi10.48550/arxiv.2209.15321,SW was supported by the Royal Society of Edinburgh (RSE) (grant number 69938). BRH and JW acknowledge the receipt of studentship awards from the Health Data Research UK-The Alan Turing Institute Wellcome PhD Programme in Health Data Science (Grant Ref: 218529/Z/19/Z).,True,True,False acknowledgement,10.48550/arxiv.2206.09802,doi10.48550/arxiv.2206.09802,"The authors are grateful to A.A. Korsheninnikov and M.D. Skorokhvatov for support of the work, and to the Russian Foundation for Basic Research under grant 18-02-00007A which carried out a significant part of the work",True,False,False acknowledgement,10.1101/2023.02.17.23286049,doi10.1101/2023.02.17.23286049,"Acknowledgements: We are grateful to the individuals who provided the information for the analyses and thank the staff of the Connecticut Department of Corrections for their efforts in the response to the COVID-19 pandemic and in collecting data for the study. We also thank Ryan Borg and Dava Flowers-Poole for their assistance in the coordination of the study. This work was supported by a contract from the Connecticut Department of Public Health (Emerging Infections Program 2021-0071 to A.I.K.), the Raj and Indra Nooyi Professorship (to A.I.K), and the Merck Investigator Studies Program (to W.L.S. and A.I.K.). The funders did not have a role in the design or implementation of the study nor the decision to publish the study. The study and its findings are the responsibility of the authors and do not reflect the views of the Connecticut Department of Correction.",True,False,False acknowledgement,10.21203/rs.3.rs-28524/v1,doi10.21203/rs.3.rs-28524/v1,The presented was supported by a research grant from Smith & Nephew. The main author ML has served scientific consultant for the preparation of the manuscript. Author ML has performed educational activities for Smith and Nephew. Stacey Leake-Gardner is employed by Smith & Nephew. The other authors has no conflicts of interest in relation to the present study. | The study was supported by a research grant from smith & Nephew. Grant # 15000946.,True,False,False acknowledgement,10.48550/arxiv.2202.05252,doi10.48550/arxiv.2202.05252,This material is based upon work supported by U.S. Department of Energy's Office of Energy Efficiency and Renewable Energy (EERE) under Solar Energy Technologies Office Award Number DEEE0008770.,True,False,False acknowledgement,10.48550/arxiv.2404.05676,doi10.48550/arxiv.2404.05676,"VL gratefully acknowledges support from the CONACyT Research Fellowship program. VL acknowledge support from PAPIIT-UNAM grant IN113522. RS acknowledges support from the Fondecyt grant 1230441. JF acknowledges financial support from the UNAM-DGAPA-PAPIIT IN110723 grant, Mexico.",True,False,False acknowledgement,10.1101/2021.09.15.460429,doi10.1101/2021.09.15.460429,"This work was supported by NIH grants 1R01DK62277, 1R01DK100287, 1R01DK116993, R01CA204586, 1R01CA251155-01 and Endowed Chair for Experimental Pathology to S.P.M. This work was also supported in part by 1R01CA258449 to SK. This work was also supported by T32EB0010216 and 1F31DK115017-01 to J.O.R. This work was also supported by P30DK120531 to the Pittsburgh Liver Research Center for services provided by Biospecimen Repository and Processing Core.",True,True,False acknowledgement,10.21203/rs.3.rs-4666170/v1,doi10.21203/rs.3.rs-4666170/v1,The authors acknowledge financial support for this research from the Taiwanese Ministry of Science and Technology (Grant numbers: MOST 111-2222-E-005-002-). This work was supported in part by China Steel Corporation.,True,False,False acknowledgement,10.48550/arxiv.2404.18526,doi10.48550/arxiv.2404.18526,"Sci‑ence This Foundation work was supported of China (Grants by the National No. 12204424, Natural No. 12147149, No. 12405029, No. 12205256, No. 12274376, No. Postdoc‑toral Science 11935006, Foundation No. 12421005), (Grant No. the 2022M722889), China the Sci-Tech Innovation Program of Hunan Province (Grant No. 2020RC4047), the National Key R&D Program (Grant Sci‑Tech Sci‑ence and Program No. Technology 2024YFE0102400), (Grant Major No. 2023ZJ1010), Project the of Hunan the the Department Henan Major of Science and Technology of Henan Province (Grant No. 241100210400), the Natural Science Foundation of Henan Province (Grant No. 242300420665), and the Doctoral Research Foundation of Zhengzhou University of Light Industry (Grant No. 2022BSJJZK20).",True,True,False acknowledgement,10.48550/arxiv.math/0404381,doi10.48550/arxiv.math/0404381,This research was partially supported by Progetto Giovani Ricercatori number CPDG031245 of the University of Padova. The author wishes to thank Professor Juan Cuadra of the University of Almería for suggesting the problem leading to Theorem 2.1.,True,False,False acknowledgement,10.48550/arxiv.1709.01686,doi10.48550/arxiv.1709.01686,This work is supported in part by gifts from the Intel Corporation and in part by the Naval Supply Systems Command award under the Naval Postgraduate School Agreements No. N00244-15-0050 and No. N00244-16-1-0018.,True,False,False acknowledgement,10.21203/rs.3.rs-1966719/v1,doi10.21203/rs.3.rs-1966719/v1,"This work was co-supported by the National Natural Science Foundation of China (Nos. 51875473 and 91960203), and the Science Center for Gas Turbine Project P2021-A-IV-003-001.",True,False,False acknowledgement,10.48550/arxiv.2106.03649,doi10.48550/arxiv.2106.03649,"This work was co-funded in the framework of RIN IFROST, and CPER BRIDGE projects by European Union with European Regional Development Fund (ERDF) and by Region Normandie. Partial support from the French National Research Agency, within the project ""INMOST"" (ANR-19-CE08-0025) is acknowledged. This study was performed on the NanoCharacterisation PlatForm (PFNC), and supported by the ""Recherches Technologiques de Base"" Program of the French Ministry of Research.",True,True,False acknowledgement,10.1101/816876,doi10.1101/816876,This work was supported by the Washington Research Foundation and by a Data Science Environments project award from the Gordon and Betty Moore Foundation (Award #2013-10-29) and the Alfred P. Sloan Foundation (Award 3835) to the University of Washington eScience Institute.,True,True,False acknowledgement,10.21203/rs.3.rs-2215379/v1,doi10.21203/rs.3.rs-2215379/v1,"This work was supported by the Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran. (Grant number: NCRCCD-0102) | This research was extracted from the master's thesis (NCRCCD-0102) of Mohajer Abdoli's, a master's student of nursing at Ahvaz Jundishapur University of Medical Sciences (AJUMS). We appreciate all the nurses and nursing students participating in this project, as well as the faculty members of the School of Nursing and Midwifery of AJUMS. This study was funded by AJUMS, Ahvaz, Iran.",True,False,False acknowledgement,10.1101/2024.01.21.576567,doi10.1101/2024.01.21.576567,This work was funded by a Project Grant from the Canadian Institutes of Health Research (CIHR) to VA (175132). JL and HM received studentships from the Fonds de Recherche du Québec – Santé.,True,False,False acknowledgement,10.1101/870063,doi10.1101/870063,"We acknowledge Bernadette Mohr, Joseph Rudzinski and Alessia Centi for critical review of this manuscript and Burkhard Dünweg for insightful discussions. This project was supported by the Deutsche Forschungsgemeinschaft (DFG) and the Alexander von Humboldt-stiftung (AvH). This work used computational resources from the Max Planck Computing and Data Facility (MPCDF).",True,True,False acknowledgement,10.48550/arxiv.1607.02163,doi10.48550/arxiv.1607.02163,☆Lei Li's research is partly supported by the NSF of China (11301285). Dongyang Chen's project was supported by the Natural Science Foundation of Fujian Province of China (No. 2015J01026).,True,False,False acknowledgement,10.48550/arxiv.1802.09884,doi10.48550/arxiv.1802.09884,"This work has been supported by the German Research Foundation as part of the Research Training Group ""Adaptive Preparation of Information from Heterogeneous Sources"" (AIPHES) under grant No. GRK 1994/1. We also acknowledge the useful comments and suggestions of the anonymous reviewers.",True,False,False acknowledgement,10.21203/rs.3.rs-1499386/v1,doi10.21203/rs.3.rs-1499386/v1,This work was supported by the National Natural Science Foundation of China (Grants No. 61775126) and by the Opened Fund of the State Key Laboratory of Integrated Optoelectronics under Grant No. IOSKL2019KF16.,True,False,False acknowledgement,10.21203/rs.3.rs-665268/v1,doi10.21203/rs.3.rs-665268/v1,This work was supported by The National Science and Technology Major Project of China (Grant 2019-VII-0004-0144).,True,False,False acknowledgement,10.1101/2023.04.10.536324,doi10.1101/2023.04.10.536324,"We would like to thank Matthias Rieckher for supplying us the videos of the CSB-1 dataset, as well as Xiao-Liu Chu for supplying the Mating Dataset video. We thank everyone who helped us annotating the data used in this publication. Maurice Deserno and Katarzyna Bozek were supported by the North Rhine-Westphalia return program (311-8.03.03.02-147635), BMBF program Junior Group Consortia in Systems Medicine (01ZX1917B) and hosted by the Center for Molecular Medicine Cologne. We thank the Regional Computing Center of the University of Cologne (RRZK) for providing computing time on the DFG-funded (Funding number: INST 216/512/1FUGG) High Performance Computing (HPC) system CHEOPS as well as support.",True,True,True acknowledgement,10.48550/arxiv.1710.10305,doi10.48550/arxiv.1710.10305,"†† and ††† Supported by NRC grant no. 240569 | †Supported by the SIR grant ""NEWHOLITE - New methods in holomorphic iteration"" no. RBSI14CFME. This work was done during the international research program ""Several Complex Variables and Complex Dynamics"" at the Center for Advanced Study at the Academy of Science and Letters in Oslo during the academic year 2016/2017.",True,False,False acknowledgement,10.48550/arxiv.2307.13141,doi10.48550/arxiv.2307.13141,"University authors thank the McDonnell Center for the Space Sciences for financial and logistic support. H.K., N.R.C., K.H. and S.C. acknowledge NASA support through the grants 80NSSC20K0329, 80NSSC21K1817, 80NSSC22K1291, 80NSSC22K1883, 80NSSC23K1041, 80NSSC24K0205, and 80NSSC24K1178. A.C. and Y.Y. acknowledge support from NSF grants DMS-2235457 and AST-2308111. A.C. also acknowledges NASA support from grant 80NSSC21K2027. Y.Y. also acknowledges support by the Multimessenger Plasma Physics Center (MPPC), NSF grant PHY-2206608. The Washington University authors acknowledge support from the McDonnell Center for the Space Sciences. N.R.C. acknowledges support by the John Templeton Foundation.",True,True,False acknowledgement,10.21203/rs.3.rs-2557586/v1,doi10.21203/rs.3.rs-2557586/v1,We would like to also thank the Fundació UdG: Innovació i Formació for providing part of the research equipment for the fieldwork.,True,False,False acknowledgement,10.1101/718148,doi10.1101/718148,"This work was supported by grants from the Major Research Plan of the National Natural Science Foundation of China (No. U1435222), the National Natural Science Foundation of China (No. 31801112), and the National Natural Science Foundation of China (No. 61873276).",True,False,False acknowledgement,10.21203/rs.3.rs-565848/v1,doi10.21203/rs.3.rs-565848/v1,"This work was supported by a WIN-POWR grant to A.K.B. (WND-POWR 03.02.00-00-I021/16) from the National Centre for Research and Development (NCBR), Poland; by an OPUS grant to A.K.B. and K.Y. (UMO-2016/23/B/NA1/01847) from the National Science Centre of Poland (NCN); by a TEAM grant to M.M. and K.Y. (TEAM/2017-4/41) from the Foundation for Polish Science (FNP), as well as the institutional core support by Małopolska Centre of Biotechnology, Jagiellonian University.",True,False,False acknowledgement,10.48550/arxiv.2005.06467,doi10.48550/arxiv.2005.06467,"The NEXT Collaboration acknowledges support from the following agencies and institutions: the European Research Council (ERC) under the Advanced Grant 339787-NEXT; the European Union's Framework Programme for Research and Innovation Horizon 2020 (2014–2020) under the Grant Agreements No. 674896, 690575 and 740055; the Ministerio de Economía y Competitividad and the Ministerio de Ciencia, Innovación y Universidades of Spain under grants FIS2014-53371-C04, RTI2018-095979, the Severo Ochoa Program grants SEV-2014-0398 and CEX2018-000867-S, and the María de Maeztu Program MDM-2016-0692; the Generalitat Valenciana of Spain under grants PROMETEO/2016/120 and SEJI/2017/011; the Portuguese FCT under project PTDC/FIS-NUC/2525/2014 and under projects UID/FIS/04559/2020 to fund the activities of LIBPhys-UC; the Pazy Foundation (Israel) under grants 877040 and 877041; the US Department of Energy under contracts number DE-AC02-06CH11357 (Argonne National Laboratory), DE-AC02-07CH11359 (Fermi National Accelerator Laboratory), DE-FG02-13ER42020 (Texas A&M) and DE-SC0019223 / DE-SC0019054 (University of Texas at Arlington); and the University of Texas at Arlington. DGD acknowledges support from the Ramón y Cajal program (Spain) under contract number RYC-2015-18820. JM-A acknowledges support from Fundación Bancaria la Caixa (ID 100010434), grant code LCF/BQ/PI19/11690012, and from the Plan GenT program of the Generalitat Valenciana, grant code CIDEGENT/2019/049. Finally, we are grateful to the Laboratorio Subterráneo de Canfranc for hosting and supporting the NEXT experiment.",True,False,True acknowledgement,10.1101/2021.12.05.471331,doi10.1101/2021.12.05.471331,KAKENHI Grant number 20K20423 and JST COI Grant Number JPMJCE1311,True,False,False acknowledgement,10.1101/2023.07.12.548718,doi10.1101/2023.07.12.548718,"This work was funded by an NIH BRAIN Initiative RF1 (RF1MH128842, brain data and sciMET-cap development) and a Silver Family Foundation Innovator Award (PBMC datasets) to A.C.A.",True,True,False acknowledgement,10.48550/arxiv.1603.06119,doi10.48550/arxiv.1603.06119,This work was supported by the NSF NEEDS program and by AIM Photonics under Project MCE-EPDA004.,True,False,False acknowledgement,10.1101/2024.02.23.581648,doi10.1101/2024.02.23.581648,This work was supported by NINDS (R01NS116051) and NIA (R21AG086934). David Linsenbardt was supported by AA022268 and P50-AA022534. Jonathan Brigman was supported by AA025652 and P50-AA022534. Jason Weick was additionally supported by grants from the National Science Foundation (NSF1632881) and National Institute of Health (P20GM109089; R21NS093442).,True,True,False acknowledgement,10.21203/rs.3.rs-1903326/v1,doi10.21203/rs.3.rs-1903326/v1,"Acknowledgements For useful feedback on previous versions, we thank the editor and reviewers. This work is partially supported by the National Natural Science Foundation of China (No. 71390333), the National Key Technology R&D Program of China during the 12th Five-Year Plan Period (No. 2013BAD19B05). The authors also gratefully acknowledge the helpful comments and suggestions of the reviewers, which have improved the presentation. | Funding: This work is partially supported by the National Natural Science Foundation of China (No. 71390333), the National Key Technology R&D Program of China during the 12th Five-Year Plan Period (No. 2013BAD19B05).",True,False,False acknowledgement,10.1101/2022.05.05.490789,doi10.1101/2022.05.05.490789,"This work was financially supported (in part) by the Advanced Plant Biotechnology Center at National Chung Hsing University from ""The Featured Areas Research Center Program within the framework of the Higher Education Sprout Project"" by the Ministry of Education (MOE) in Taiwan. The work reported here was supported by a grant (AS-104-TP-B01), the Thematic Research Program, from Academia Sinica of Taiwan, and by grants from the Ministry of Science and Technology (MOST 107-2313-B-415-007) and (MOST 108-2313-B-415-013-MY3) of Taiwan.",True,False,False acknowledgement,10.1101/2022.05.16.492055,doi10.1101/2022.05.16.492055,"This research has been funded by Deutsche Forschungsgemeinschaft (DFG) through grant SFB 958/Project A04, SFB 1114/Project C03, European Research Commission (CoG 772230 ""ScaleCell""), the Berlin Institute for Foundations of Learning and Data (BIFOLD), through DFG project number 278001972 – TRR 186 and BMBF grant CLS9 COMPXRAY. Crandell-Rees Feline Kidney (CRFK) cells were a kind gift from Benedikt Kaufer lab. The acquisition of x-ray tomograms was performed at the U41-PGM1-XM beamline at BESSY II synchrotron facility unless otherwise indicated. The data collected for supplemental figure S3 was acquired at the MISTRAL beamline at ALBA synchrotron in collaboration with the beamline staff1. The data presented in supplemental figure S4 is based on the raw data of EMPIAR-10416 and EMPIAR-10417, which were kindly provided to us by the staff of B24 beamline at Diamond Light Source.",True,True,False acknowledgement,10.48550/arxiv.hep-th/9909176,doi10.48550/arxiv.hep-th/9909176,"We would like to thank the organizers of the workshop for the wonderful workshop. I am grateful to H. Aoki, S. Iso, H. Kawai, Y. Kitazawa and T. Tada for collaborations and K. Okuyama for discussions. This work was supported by the Grant-in-Aid for Scientific Research from the Ministry of Education, Science and Culture of Japan.",True,False,False acknowledgement,10.48550/arxiv.2308.11347,doi10.48550/arxiv.2308.11347,"Acknowledgements. The author expresses gratitude to Erik Bates, Chris Janjigian, Firas RassoulAgha, and Evan Sorensen for their insightful discussions regarding their works on the Busemann process. The author also extends sincere thanks to Timo Seppäläinen for the valuable suggestions provided for this paper. Furthermore, the author acknowledges partial support from the Wylie Research Fund at the University of Utah.",True,False,False acknowledgement,10.48550/arxiv.2403.00283,doi10.48550/arxiv.2403.00283,"The first author is partly supported by the New Faculties' Basic Research Capability Enhancement Program through No. 2-9-2022-010 at China University of Geosciences (Beijing). The first author appreciates the assistance of Yi Ren at Qualcomm (Shanghai) for his support in sensor connectivity and Zhuoqun Gao for her meticulous care. The authors appreciate the constructive comments from Prof. Daniel Straub at the Technical University of Munich. Any opinions, findings, and conclusions expressed in this paper are those of the authors and do not necessarily reflect the views of the sponsors.",True,False,False acknowledgement,10.21203/rs.3.rs-20720/v2,doi10.21203/rs.3.rs-20720/v2,"This study was funded by the National Nature Science Foundation of China(Grant No. 81872714), the Shanxi Provincial Key Laboratory of Major Diseases Risk Assessment (Grant No. 201805D111006) and the General Program for Young Scholar of Shanxi Province (Grant No. 201801D221423).",True,False,False acknowledgement,10.1101/2021.05.13.444101,doi10.1101/2021.05.13.444101,"Funding: This work was supported by the US Office of Naval Research Global [grant number N62909-17-1-2139] awarded to Martin V Sale. The funding body had no involvement in the study design; the collection, analysis, and interpretation of data; the writing of the report; or the decision to submit the article for publication.",True,False,False acknowledgement,10.21203/rs.3.rs-108518/v1,doi10.21203/rs.3.rs-108518/v1,"This study was supported by the Ministry of Education, Culture, Sports, Science and Technology (MEXT) of Japan, under its Earthquake and Volcano Hazards Observation and Research Program, and was a consignment study from the Ministry of Land, Infrastructure, Transport and Tourism of Japan (MLIT).",True,False,False acknowledgement,10.1101/633628,doi10.1101/633628,I would like to thank Suvrajit Maji and Hstau Liao for helpful comments on an earlier version of the manuscript. This research was supported by the National Institutes of Health Grants GM29169 and GM55440 (to J.F.).,True,False,False acknowledgement,10.1101/2021.02.02.429332,doi10.1101/2021.02.02.429332,"This work was supported by Société Académique Vaudoise to L.K., and SNF (grant 310030B_176399) to N.G., (grants 31003A_179159 and PCEGP3_187007) to M.B.",True,True,False acknowledgement,10.48550/arxiv.2106.03884,doi10.48550/arxiv.2106.03884,Acknowledgements. The author was partially supported by NSF grant number DMS-1811900. The author wishes to thank John Baldwin for many helpful discussions and comments on a draft of this paper.,True,False,False acknowledgement,10.48550/arxiv.1601.02238,doi10.48550/arxiv.1601.02238,*Tiandong Wang and S. Resnick were supported by Army MURI grant W911NF-12-1-0385 to Cornell University.,True,False,False acknowledgement,10.48550/arxiv.1711.02483,doi10.48550/arxiv.1711.02483,"The work of D. W. K. Ng was supported under Australian Research Councils Discovery Early Career Researcher Award funding scheme (DE170100137). The work of R. Schober was supported by the Alexander von Humboldt Professorship Program. The work of V.W.S. Wong was supported by the Natural Sciences and Engineering Research Council of Canada. This work was presented in part at the IEEE Global Communications Conference (Globecom) 2016, Washington, DC, USA, Dec. 2016 [1].",True,False,False acknowledgement,10.48550/arxiv.1006.4952,doi10.48550/arxiv.1006.4952,Most of this work was carried out during the authors’ visits to each other’s home institution whom we thank for the great support and warm hospitality. Particular thanks go to Bert van Geemen and Klaus Hulek. We are grateful to the referee for many helpful comments.,True,False,False acknowledgement,10.1101/2022.10.19.22281248,doi10.1101/2022.10.19.22281248,The authors would like to thank all participants of the CoMix survey. The CoMix study in the Netherlands was made possible through funding from the European Union’s Horizon 2020 research and innovation programme - project EpiPose (Grant agreement number 101003688). This work reflects only the authors’ view. The European Commission is not responsible for any use that may be made of the information it contains. We are grateful to the EpiPose management team for coordinating the CoMix survey so data collection was made possible in the Netherlands.,True,True,False acknowledgement,10.48550/arxiv.1702.05371,doi10.48550/arxiv.1702.05371,This research is supported by U.S. Air Force Office of Scientific Research under grant number FA9550-17-1-0259. This research was conducted when D. Bauso was visiting NYUAD.,True,False,False acknowledgement,10.48550/arxiv.1402.3689,doi10.48550/arxiv.1402.3689,"This work is financially supported by the ""Direction Générale de l'Armement"" (DGA), The French Government Defense",True,False,False acknowledgement,10.48550/arxiv.2401.05428,doi10.48550/arxiv.2401.05428,"The authors would like to acknowledge A. R. Vazsonyi, J. M. Wang, S. S. Jain, S. Mirjalili, L. Jofre Cruanyes, K. P. Griffin, and the multi-phase group at the 17th Stanford University Center for Turbulence Research Summer Program for helpful discussions and feedback. This work utilised the Blanca condo computing resource of the University of Colorado Boulder, as well as the Summit supercomputer, which is supported by the National Science Foundation (awards ACI-1532235 and ACI-1532236), the University of Colorado Boulder, and Colorado State University, and the Alpine high performance computing resource, which is jointly funded by the University of Colorado Boulder, the University of Colorado Anschutz, Colorado State University, and the National Science Foundation (award 2201538).",True,False,False acknowledgement,10.48550/arxiv.1511.01935,doi10.48550/arxiv.1511.01935,"This research was primarily supported by NASA Living With a Star project #NNA13AB92I, ""Data Assimilation for the Integrated Global-Sun Model"". Additional support was provided by the Air Force Office of Scientific Research project R-3562-14-0, ""Incorporation of Solar Far-Side Active Region Data within the Air Force Data Assimilative Photospheric Flux Transport (ADAPT) Model"". The photospheric observations used in Figures 5, 6, and 7 were provided by SOLIS-VSM.",True,True,False acknowledgement,10.1101/2023.11.15.567303,doi10.1101/2023.11.15.567303,This work was supported by a Natural Sciences and Engineering Research Council of Canada (NSERC) grant to G.C.D.,True,False,False acknowledgement,10.48550/arxiv.2410.03400,doi10.48550/arxiv.2410.03400,Part of this work is based on work from the author's PhD. The author gratefully acknowledges Martin Liebeck for many helpful conversations during their PhD and for patiently reviewing preliminary versions of this work. The author would also like to acknowledge Alexander Kleshchev for several significant conversations which guided this work. This work was supported both by the Engineering and Physical Sciences Research Council [EP/L015234/1] through the EPSRC Centre for Doctoral Training in Geometry and Number Theory (London School of Geometry and Number Theory) and by Heilbronn Institute for Mathematical Research via the University of Manchester.,True,False,False acknowledgement,10.31235/osf.io/hxv36,doi10.31235/osf.io/hxv36,"Thiede acknowledges the assistance provided by the Population Research Institute at Penn State University, which is supported by the Eunice Kennedy Shriver National Institute on Child Health and Human Development (P2CHD041025). Thiede was also supported by the USDA National Institute of Food and Agriculture Multistate Research Project #PEN04623 (Accession #1013257). GIS support was provided by Philip McDaniel of UNC Libraries.",True,True,False acknowledgement,10.1101/2021.09.29.461966,doi10.1101/2021.09.29.461966,"The authors gratefully acknowledge partial support from the following sources: SB,TK, AW, DEN, WJM, and TAL: NIH-NIAID, U19-AI089680;",True,False,False acknowledgement,10.26434/chemrxiv-2024-62kh1,doi10.26434/chemrxiv-2024-62kh1,"R.A. acknowledges support by the Dutch Research Council (NWO Rubicon 019.202EN.028). The authors thank SURF (www.surf.nl) for the support in using the National Supercomputer Snellius. R.M-A. and R.A-O. thank ANID-Chile for support under FONDECYT N. 1200200. G.P, L.B.A and P.C.T.S would like to thank the support of the French National Center for Scientific Research (CNRS) and the funding from research collaboration agreements with PharmCADD. This work was granted access to the HPC resources of IDRIS and TGCC under the allocations 2022-A0120713456 and | 2023-A0140713456 made by GENCI. We also acknowledge the support of the Centre Blaise Pascal's IT test platform at ENS de Lyon (Lyon, France) for the computer facilities. The platform operates the SIDUS solution developed by Emmanuel Quemener65. S.J.M. acknowledges funding from the European Research Council with the Advanced grant ""COMP-O-CELL"" (101053661).",True,False,False acknowledgement,10.21203/rs.3.rs-5024083/v2,doi10.21203/rs.3.rs-5024083/v2,"Funding: This work was supported by National Natural Sciences Foundation of China (82360601 and 82160487 to Z.Y.), Cuiying Scientific and Technological Innovation Program of the Lanzhou University Second Hospital (CY2022-MS-A05 to Z.Y.).",True,False,False acknowledgement,10.21203/rs.3.rs-3020750/v1,doi10.21203/rs.3.rs-3020750/v1,This study was supported by research funding from the Beijing Science and Technology Planning Project (Z151100002115049). The funding source provided financial support without any influence on the study design and interpretation of data.,True,False,False acknowledgement,10.31234/osf.io/fvbd3,doi10.31234/osf.io/fvbd3,"We would like to acknowledge funding from Riksbankens Jubileumsfond, the Knut and Allice Wallenberg Foundation, NIH awards K01 MH104739 and R21 MH103550, and Simons Foundation Award #383661.",True,False,False acknowledgement,10.48550/arxiv.2009.10337,doi10.48550/arxiv.2009.10337,"This work was supported by Academy of Finland grant 299358 and the Technology Industries of Finland Centennial Foundation. The experiments utilized the Triton cloud computing infrastructure of Aalto University. Part of the research was conducted while the first author was a visiting researcher at University of British Columbia, Canada.",True,False,False acknowledgement,10.1101/2023.12.04.569947,doi10.1101/2023.12.04.569947,"We would like to thank the NSF Division of Molecular and Cellular Biology for a CAREER grant (2045844) and NIH/NIGMS for a New Innovator Award (DP2-GM140926) both to S.D.F. E.M.S. thanks the Program in Molecular Biophysics training grant (NIH-T32GM135131). Funds from the NSF CAREER grant and the Dreyfus Foundation partly supported undergraduates involved in the project (J.B., G.L., S.L.). We thank Alexey Nesvizhskii for critical manuscript reading and helpful feedback.",True,False,True acknowledgement,10.26434/chemrxiv-2023-4rw80,doi10.26434/chemrxiv-2023-4rw80,We thank Saket Bhargava (Dow Inc.) for the technical discussion. We also acknowledge support for this work was provided by DOW Chemical Company.,True,False,False acknowledgement,10.48550/arxiv.2102.03616,doi10.48550/arxiv.2102.03616,"This research is funded by Tejas Networks, Bangalore, India | This research project is funded by Tejas Networks, Bangalore, India.",True,False,False acknowledgement,10.1101/2020.10.24.353318,doi10.1101/2020.10.24.353318,"JF acknowledges support from NSF CHE-1738979 and the Sloan Kettering Institute. MW acknowledges sup-port from a FWF Erwin Schrödinger Postdoctoral Fellowship J 4245-N28. JDC acknowledges support from NIH grant P30 CA008748, NIH grant R01 GM121505, NIH grant R01 GM132386, and the Sloan Kettering Institute. | JDC is a current member of the Scientific Advisory Board of OpenEye Scientific Software, Redesign Science, and Interline. The Chodera laboratory receives or has received funding from multiple sources, including the National Institutes of Health, the National Science Foundation, the Parker Institute for Cancer Immunotherapy, Relay Therapeutics, Entasis Therapeutics, Silicon Therapeutics, EMD Serono (Merck KGaA), AstraZeneca, Vir Biotechnology, Bayer, XtalPi, Foresite Laboratories, the Molecular Sciences Software Institute, the Starr Cancer Consortium, the Open Force Field Consortium, Cycle for Survival, a Louis V. Gerstner Young Investigator Award, and the Sloan Kettering Institute. A complete funding history for the Chodera lab can be found at http://choderalab.org/funding",True,False,True acknowledgement,10.1101/2023.09.27.559821,doi10.1101/2023.09.27.559821,"We thank Mike Filius for his generous help with the DNA constructs and overall scientific advice. C.J. is supported by The Netherlands Organization for Scientific Research (NWO) (Vici), the European Research Council (an ERC Consolidator grant, 819299), Basic Science Research Program (NRF), and Frontier 10-10 (Ewha Womans University). M.H. acknowledges funding from the Biotechnology and Biological Sciences Research Council (BBSRC, BB/I006303/1).",True,False,False acknowledgement,10.1101/2022.02.03.478944,doi10.1101/2022.02.03.478944,"We thank the French National Research Agency (ANR) LABEX SIGNALIFE ANR-11-LABX-0028-01 and the Fondation pour la Recherche Médicale (FDT201904008453) for supporting M.D. PhD fellowship. This study was supported by ANR (ANR-18-CE12-0004, ANR-20-CE12-0020), Fondation pour la Recherche Médicale (EQU202003010413), CEFIPRA, Fondation ARC (N° PJA32020070002320) to G.L. Work in E.G. laboratory is supported by grants from the Fondation ARC pour la recherche sur le cancer (Labelisation N° PGA20160203873) and the INSERM cross cutting program on aging (AGEMED).",True,False,False acknowledgement,10.48550/arxiv.1904.02306,doi10.48550/arxiv.1904.02306,The last author would like to acknowledge support from a Facebook Fellowship.,True,False,False acknowledgement,10.48550/arxiv.2204.04937,doi10.48550/arxiv.2204.04937,"The work was partially supported by the Department of Artificial Intelligence at Wroclaw University of Science and Technology, and by European Regional Development Fund (ERDF) in RPO WD 2014-2020 (project no. RPDS.01.02.02-02-0065/20). We want to thank Mikołaj Morzy for an initial review and feedback. We want to thank our annotators team - Barbara Orłowska, Daria Szałamacha, Konrad Gajewski and Paweł Odrowąż-Sypniewski.",True,False,False acknowledgement,10.48550/arxiv.2209.08964,doi10.48550/arxiv.2209.08964,"S. Rangan, W. Xia, S. Kang, and M. Mezzavilla were supported by NSF grants 1302336, 1564142, 1547332, and 1824434, SRC, and the industrial affiliates of NYU WIRELESS. A. Lozano and G. Geraci were supported by ERC grant 694974, by MINECO's Projects RTI2018-101040 and PID2021123999OB-I00, by the ""Ramón y Cajal"" program, and by ICREA. The work of V. Semkin was supported in part by the Academy of Finland.",True,False,False acknowledgement,10.1101/2024.02.18.578245,doi10.1101/2024.02.18.578245,"This work was supported by the U.S. Department of Energy, Office of Science, Basic Energy Sciences under Award No. DE-SC0022035 for M. Meigooni, H.Y., J.L., E.T., X.L, and C.M.S. and the National Science Foundation under Award 2227399 for R.S. and C.M.S.",True,False,False acknowledgement,10.1101/2022.09.26.509156,doi10.1101/2022.09.26.509156,"Acknowledgments: This work was supported by grants from NKFIH KH129567, NKFIH K135027 and TKP2021-EGA-25 to C.C., grants NKFIH K137563 and TKP2021-EGA-24 to K.K. and from the project NextGen-O2k (Oroboros Instruments) which has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement N° 859770. We would like to acknowledge the support and resources of the Birmingham Metabolic Tracer Analysis Core. T.N.S. has received funding from Childhood Cancer UK, Foundation for Metabolic Cancer Therapies, the Corkin Family Foundation, and Dr. Edward Miller. D. R. was supported by a scholarship from School of PhD Studies of Semmelweis University, project no EFOP-3.6.3-VEKOP-16-2017-00009.",True,False,False acknowledgement,10.1101/401513,doi10.1101/401513,"This work was supported by the National Natural Science Foundation of China (Grant 31570844), the National Basic Research Program of China (973 project, Grant 2013CB127103), Project 2662016PY094 supported by the Fundamental Research Funds for the Central Universities. The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.",True,True,False acknowledgement,10.1101/2023.04.14.23288550,doi10.1101/2023.04.14.23288550,"Funding National Health and Medical Research Council of Australia (GTN2009264; GTN1158384), National Institute on Aging (AG062531), Alzheimer's Association (2018-AARG-591358), and the Banting Fellowship Program (#454104). | Dr. Pase is supported by a National Health and Medical Research Council of Australia Investigator Grant (GTN2009264) with sleep research funding from the National Health and Medical Research Council of Australia (GTN1158384), National Institute on Aging (R01 AG062531) and Alzheimer's Association (2018-AARG-591358). Dr. Baril is funded by the Banting Fellowship Program (#454104). The funders of the study had no role in study design, data collection, data analysis, data interpretation, or writing of the report.",True,True,False acknowledgement,10.48550/arxiv.1912.02000,doi10.48550/arxiv.1912.02000,"* Giacomo Como is also with the Department of Automatic Control, Lund University, Sweden. This work was partially supported by MIUR grant Dipartimenti di Eccellenza 2018-2022 [CUP: E11G18000350001], the Swedish Research Council, and by the Compagnia di San Paolo.",True,False,False acknowledgement,10.48550/arxiv.2205.05720,doi10.48550/arxiv.2205.05720,The authors SB and PT acknowledge support by the DFG via the priority programme SPP 2256 Variational Methods for Predicting Complex Phenomena in Engineering Structures and Materials (BA 2268/7-1). The author AB is partially supported by NSF grant DMS-2110811.,True,False,False acknowledgement,10.22541/au.167069039.95224014/v1,doi10.22541/au.167069039.95224014/v1,"This research was funded by The National Natural Science Foundation of China, grant number 32160164 This research was funded by The Natural Science Foundation of Gansu Province, grant number 18JR2JA004 This research was funded by The Fundamental Research Funds for the Central Universities, grant number(31920210033, 31920210002)",True,False,False acknowledgement,10.48550/arxiv.1801.03635,doi10.48550/arxiv.1801.03635,"*The authors thank the Johns Hopkins Causal Inference Working Group, Luke Keele, Betsy Ogburn, Jamie Robins, Fredrik Sävje, and Larry Wasserman for helpful comments and discussions. This work was partially supported by the NSF grant DMS-17130003.",True,False,False acknowledgement,10.1101/2023.11.13.566844,doi10.1101/2023.11.13.566844,"This work was supported by grants from the Research Foundation Flanders [G005219N, G003322N] and a Strategic Research Program Financing from the VUB [SRP50].",True,False,False acknowledgement,10.48550/arxiv.1404.6078,doi10.48550/arxiv.1404.6078,"An acknowledgment section references the writing of the paper in Aarhus University, Denmark, and mentions financial support for the research. the RFFI grant No 11-01-00458 and by project SPbGU No 11.38.215.2014.",True,False,False acknowledgement,10.21203/rs.3.rs-150894/v1,doi10.21203/rs.3.rs-150894/v1,This project was funded through the ERC as part of iHEAR project,True,False,False acknowledgement,10.48550/arxiv.2407.11490,doi10.48550/arxiv.2407.11490,"This work was supported by Grants-in-Aid for Scientific Research (Grant Nos. JP19H05603, JP22H00112, and JP24H00827) and JSPS Bilateral Program Number JPJSBP120249911.",True,False,False acknowledgement,10.21203/rs.3.rs-2220141/v1,doi10.21203/rs.3.rs-2220141/v1,This study was supported by Program of Excellent Doctoral (Postdoctoral) of Zhongnan Hospital of Wuhan University (Grant No. ZNYB2019006) and Natural Science Foundation of Hubei Province (Grant No. 2019CFB505).,True,False,False acknowledgement,10.48550/arxiv.2312.10587,doi10.48550/arxiv.2312.10587,"This research is supported by the Engineering and Physical Sciences Research Council (EPSRC) under Grant EP/Y025946/1. Wangkun Xu is also supported by the PhD scholarship of the Department of EEE, Imperial College London. Jianhong Wang is fully supported by the UKRI Turing AI World-Leading Researcher Fellowship, EP/W002973/1.",True,False,False acknowledgement,10.48550/arxiv.1507.01483,doi10.48550/arxiv.1507.01483,The first author is partially supported by DGICYT Grant MTM2012-33073 and CAPES-PVE Grant 88881.062217/2014-01. The second author is partially supported by FAPESP Grant 2013/14014-3. The third author is partially supported by CNPq Grant 309626/2014-5 and FAPESP Grant 2013/10856-0.,True,True,False acknowledgement,10.31224/osf.io/c974v,doi10.31224/osf.io/c974v,This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 764547. The sole responsibility of this publication lies with the author(s). The European Union is not responsible for any use that may be made of the information contained herein.,True,False,False acknowledgement,10.48550/arxiv.1912.08487,doi10.48550/arxiv.1912.08487,Acknowledgement This project was supported by the Austrian Research Promotion Agency (FFG) project DGT (860820). This work was partially funded by the Christian Doppler Laboratory for Embedded Machine Learning.,True,False,False acknowledgement,10.48550/arxiv.1008.2935,doi10.48550/arxiv.1008.2935,"Acknowledgment. The second-named author acknowledges partial financial sup- port from the Project MTM2007-61446, DGI-FEDER, of the MCYT, Spain, and from the grant PNII - Programme ""Idei"" (code 1194).",True,False,False acknowledgement,10.1101/2022.11.18.516922,doi10.1101/2022.11.18.516922,"- Acknowledgments: This work was funded by the UK Dementia Research Institute which receives its funding from the Medical Research Council, Alzheimer's Society, and Alzheimer's Research UK. We gratefully acknowledge the contributions of our brain tissue donors and their families. BWM receives funding from the Medical Research Council (Grant Number MR/R001316/1) and from Leducq Foundation Transatlantic Network of Excellence, Stroke-IMPaCT (Grant Number 19CVD01). For the purpose of open access, the author has applied a CC-BY public copyright license to any Author Accepted Manuscript version arising from this submission. We would like to thank the QMRI Flow Cytometry & Cell Sorting Facility at The University of Edinburgh for assistance with FACS studies, the Shared University Research Facilities (SuRF) Histology facility at The University of Edinburgh for assistance with processing, sectioning and slide-scanning brains, Dr Daniel Soong at The MRC Centre for Reproductive Health, University of Edinburgh for his assistance with image analysis, and Prof. Siddharthan Chandran at The University of Edinburgh for providing the SHSY-5Y cell line.",True,False,False acknowledgement,10.48550/arxiv.2004.09190,doi10.48550/arxiv.2004.09190,Acknowledgement This work was supported by the National Natural Science Foundation of China (No. 61672481) and Youth Innovation Promotion Association CAS (No. 2018495).,True,False,False acknowledgement,10.21203/rs.3.rs-38388/v1,doi10.21203/rs.3.rs-38388/v1,"The experimental design of this work was conducted thanks to funding from INIA project RTA2011-00064-00-00. This study was part of the Feed-a-Gene project and received funding from the European Union’s H2020 program under grant agreement no. 633531. MVG is a recipient of a “Formación de Personal Investigador (FPI)” pre-doctoral fellowship from INIA, associated with the research project RTA2014-00015-C2-01. YRC was funded by Marie Skłodowska-Curie grant (P-Sphere) agreement no. 6655919 (EU).",True,False,False acknowledgement,10.21203/rs.3.rs-544226/v1,doi10.21203/rs.3.rs-544226/v1,"Acknowledgments: We thank I. Guzei for small molecule x-ray structure determination and S.H. Gellman and members of the Buller group for critical reading of the manuscript. The crystal mounting and data collection were mediated by the Collaborative Crystallography Core, Department of Biochemistry, UWMadison and data were collected at the Life Sciences Collaborative Access Team beamline 21ID-D at the Advanced Photon Source, Argonne National Laboratory and we thank Z. Wawrzak for technical assistance during data collection. Use of the LS-CAT Sector 21 was supported by the Michigan Economic Development Corporation and the Michigan Technology Tri-Corridor (Grant 085P1000817). This work was supported by the Office of the Vice Chancellor for Research and Graduate Education at the University of Wisconsin-Madison, Wisconsin Alumni Research Foundation, National Institute of Health (grant DP2-GM137417), Morgridge Institute for Research – Metabolism Theme Fellowship, and the NIH Biotechnology Training Grant (T32-GM008349). The Bruker AVANCE III-500 NMR spectrometers were supported by the Bender Fund. The Advanced Photon Source was supported by the U. S. Department of Energy, Office of Science, Office of Basic Energy Sciences, under Contract No. W-31-109-Eng-38. The Bruker D8 VENTURE Photon III X-ray diffractometer was partially funded by NSF Award (#CHE-1919350) to the UW–Madison Department of Chemistry",True,True,False acknowledgement,10.48550/arxiv.2403.06773,doi10.48550/arxiv.2403.06773,"Most progress on this article and its follow-up has been made during mutual visits for various occasions in different places, and we would like to thank the respective organizers and hosts: the 2022 workshop ""math in the mill"" in Sondheim vor der Rhön; IMPAN Warsaw; and Leibniz University Hannover. This research is also part of the EU Staff Exchange project 101086394 ""Operator Algebras That One Can See"". It was partially supported by the University of Warsaw Thematic Research Programme ""Quantum Symmetries"". The second author would like to thank Profs. K. Schmüdgen and J. Cimprič for insightful discussions and their encouragement to work on this topic.",True,False,False acknowledgement,10.21203/rs.3.rs-4792645/v1,doi10.21203/rs.3.rs-4792645/v1,"JST Mirai, Grant Number JPMJSP2136, and JSPS KAKENHI, Grant Number 23K21830, supported this work.",True,False,False acknowledgement,10.1101/2021.12.08.471450,doi10.1101/2021.12.08.471450,"This study was financed by the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP, São Paulo, Brazil) through a scholarship to FM (grant number 2015/06677-8), CM (grant number 2018/03403–2) and GS (BIOEN grant number 2016/02506-7).",True,False,False acknowledgement,10.48550/arxiv.2009.01455,doi10.48550/arxiv.2009.01455,"*This research was supported by the National Key Research and Development Program of Ministry of Science and Technology of China under Grant No. 2018AAA0101002, the National Natural Science Foundation of China under grants No. 61803024, 11688101,61906016, the General Project of Scientific Research Project of the Beijing Education Committee under Grant No. KM201811417002, the Foundation of Beijing Union University under Grant No. BPHR2019DZ08, the Young Elite Scientists Sponsorship Program by CAST under Grant 2018QNRC001, and Beijing Institute of Technology Research Fund Program for Young Scholars.",True,False,False acknowledgement,10.1101/2022.11.20.22282562,doi10.1101/2022.11.20.22282562,"The authors would like to thank Harris Health System for their partnership and support throughout the study. This study is supported by a grant from the National Institute for Minority Health and Health Disparities (NIMHD, R01MD013715, PI: JR Montealegre). The NIMHD was not involved in the study design; the collection, analysis, or interpretation of data; the writing of this manuscript; or the decision to submit the manuscript for publication. The REDCap software platform used for data capture is supported by a grant from the National Center for Supporting Translational Sciences (UL1 TR000445).",True,True,True acknowledgement,10.21203/rs.3.rs-422855/v1,doi10.21203/rs.3.rs-422855/v1,Funding: This research was funded by the National Natural Science Foundation of China (Grant No. 41961064); Yunnan Department of Science and Technology application of basic research project (Grant No. 202001BB050030).,True,False,False acknowledgement,10.48550/arxiv.0710.2082,doi10.48550/arxiv.0710.2082,This work was supported in part by the Natural Science Foundation of China (No.10171059) and by the NSF Grant 0620539.,True,False,False acknowledgement,10.48550/arxiv.2104.06746,doi10.48550/arxiv.2104.06746,"This work was granted by the 9th research program of Labex LaSIPS (Paris-Saclay Systems and Engineering Laboratory, Paris-Saclay University). Computations were performed using HPC resources from the computing centre of CentraleSupélec and ENS Paris-Saclay.",True,False,False acknowledgement,10.48550/arxiv.2301.11564,doi10.48550/arxiv.2301.11564,"This work acknowledges the support by the following programs: Postdoctoral Fellowship Program of CPSF (GZC20232292). National Natural Science Foundation of China (T2125009, 92048302). The funding of the ""Pioneer"" R&D Program of Zhejiang (Grant No. 2023C03007). Suzhou Key Laboratory of Artificial Intelligence and Social Governance Technologies (SZS2023007), Smart Social Governance Technology and Innovative Application Platform (YZCXPT2023101).",True,False,False acknowledgement,10.26434/chemrxiv-2023-9z6bg-v2,doi10.26434/chemrxiv-2023-9z6bg-v2,"The authors thank Oliver Welz for valuable advice on the experimental data and the use of the ORCA software. This work was supported by the German Federal Ministry of Education and Research (BMBF) within the funding program ""Quantum technologies — From basic research to market"" in the joint project MANIQU (Grant No. 13N15575).",True,True,True acknowledgement,10.48550/arxiv.2410.15224,doi10.48550/arxiv.2410.15224,We acknowledge funding support from NSF Grants No. CCF-2241298 and ECCS-2409701. We thank the Ohio Supercomputer Center for providing the computational resources needed in carrying out this work.,True,False,False acknowledgement,10.21203/rs.2.14041/v2,doi10.21203/rs.2.14041/v2,KO is supported by an Australian Government Research Training Program Scholarship and a Westpac Scholars Trust 2018 Future Leaders Scholarship.,True,False,False acknowledgement,10.48550/arxiv.1810.00511,doi10.48550/arxiv.1810.00511,"Acknowledgements: We would like to acknowledge Srinivasan Parthasarathy, Jiongqian Liang, Vishal Dey and the anonymous reviewers for their insightful comments that improved this paper. This work was supported by the National Science Foundation grants IIS-1464381, CCF-1816577, CCF- 1815145, CCF-1423230 and CAREER award 1453472.",True,False,False acknowledgement,10.48550/arxiv.1610.07220,doi10.48550/arxiv.1610.07220,"This research is part of the Blue Waters sustained-petascale computing project, which is supported by the National Science Foundation (awards OCI-0725070, ACI-1238993, and ACI1444747) and the state of Illinois. Blue Waters is a joint effort of the University of Illinois at Urbana-Champaign and its National Center for Supercomputing Applications. This work is also supported by NSF grants ACI-1253881, CCF-1439057, and the DOE Office of Science through the",True,False,False acknowledgement,10.48550/arxiv.1305.6465,doi10.48550/arxiv.1305.6465,"Acknowledgments. Thanks are due to B. Kostant for kindly answering some basic questions concerning stabilisers of semisimple Lie algebra elements. This research is partially supported by ANR grants 08-BLAN-0317-01/02 (SEDIGA), 05-BLAN-0029-01 (GIMP).",True,False,False acknowledgement,10.48550/arxiv.math/9907008,doi10.48550/arxiv.math/9907008,"Each author is partly supported by a grant from NSERC; | This collaboration was partly supported by an Ontario-Quebec Exchange Grant of the Ministry of Education and Training of Ontario, Canada.",True,False,False acknowledgement,10.21203/rs.3.rs-4835625/v1,doi10.21203/rs.3.rs-4835625/v1,"Funding statement: This work was supported by the Strategic Research Promotion of Yokohama City University Research (KT), the Aid for Scientific Research C (22K09210 to KT), and Gold Ribbon Network research grant (YN and MK).",True,False,False acknowledgement,10.48550/arxiv.2402.16019,doi10.48550/arxiv.2402.16019,"This work was supported by the National Natural Science Foundation of China under Grants Nos. 11875328 and 12075327, the Central Government Guidance Funds for Local Scientific and Technological Development, China (No. Guike ZY22096024), the Key Laboratory of Nuclear Data foundation(JCKY2022201C157).",True,True,False acknowledgement,10.1101/277996,doi10.1101/277996,This work was supported by NIH grant MH063207.,True,False,False acknowledgement,10.48550/arxiv.1806.09843,doi10.48550/arxiv.1806.09843,This work was supported in part by the the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIP) (No. 2017R1C1B2009280) and the DGIST R&D Program of the Ministry of Science and ICT(17-ST-02).,True,False,False acknowledgement,10.48550/arxiv.astro-ph/0410349,doi10.48550/arxiv.astro-ph/0410349,"The author acknowledges the support through RFBR grants 02-02-16500, 03-02-17174 and 04-02-16720.",True,False,False acknowledgement,10.48550/arxiv.2410.05027,doi10.48550/arxiv.2410.05027,"This work was partially supported by the National Science Foundation Graduate Research Fellowship under Grant No. DGE-1746891 (Remedios). Development is partially supported by CDMRP W81XWH2010912 (Prince), NIH R01 CA253923 (Landman), NIH R01 CA275015 (Landman), the NMSS grant RG-1507-05243 (Pham) and PCORI grant MS-1610-37115 (Newsome and Mowry). The statements in this publication are solely the responsibility of the authors and do not necessarily represent the views of PCORI, its Board of Governors or Methodology Committee.",True,False,False acknowledgement,10.1101/442848,doi10.1101/442848,Acknowledgements. This work was supported by an NSF/NIH CRCNS grant (R01MH115557) and an NSF grant (DMS-1517629). BK and KJ were supported by NSF grant (DMS-1662305). KJ was also supported by NSF NeuroNex grant (DBI-1707400). ZPK was also supported by an NSF grant (DMS- 1615737).,True,False,False acknowledgement,10.21203/rs.3.rs-2116553/v1,doi10.21203/rs.3.rs-2116553/v1,"This work was supported by the Xinjiang Key Laboratory of Neurological Disorder Research(grant number: XJDX1711-2206), Xinjiang Uygur Autonomous Region Regional Collaborative Innovation Project (Shanghai Cooperation Organization Science and Technology Partnership Program and International Science and Technology Cooperation Program) (grant number: 2021E00131), Xinjiang Natural Science Foundation youth science fund Project (grant number: 2021D01C341).",True,False,False acknowledgement,10.21203/rs.3.rs-3314860/v1,doi10.21203/rs.3.rs-3314860/v1,"Vanderbilt University Medical Center's BioVU (BIOVU) projects are supported by numerous sources: institutional funding, private agencies, and federal grants. These include NIH funded Shared Instrumentation Grant S10OD017985, S10RR025141, and S10OD025092; CTSA grants UL1TR002243, UL1TR000445, and UL1RR024975. Genomic data are also supported by investigator-led projects that include U01HG004798, R01NS032830, RC2GM092618, P50GM115305, U01HG006378, U19HL065962, and R01HD074711. | Electrocardiographic data at Vanderbilt University Medical Center were obtained using Vanderbilt's Synthetic Derivative. The Synthetic Derivative resource is supported by Clinical and Translational Science Awards award No. UL1TR000445 from the National Center for Advancing Translational Sciences. The contents of this publication are solely the responsibility of the authors and do not necessarily represent official views of the National Center for Advancing Translational Sciences or the National Institutes of Health. | This project was supported by National Institutes of Health R01GM133169 (Dr. Below, Dr Chen, Dr. Huff, Mr. Baker), U01HG011181 (Dr. Roden), and T32 HG008962 (Dr. Lancaster). Dr. Chen was supported by the American Heart Association (AHA)18PRE34060101.",True,True,False acknowledgement,10.48550/arxiv.2305.06059,doi10.48550/arxiv.2305.06059,Acknowledgments. This work was supported by National Natural Science Foundation of China (Grant No. 12171344) and the National Key R \& D Program of China (No. 2018YFA0701700 and No. 2018YFA0701701). The authors thank Volodymyr Mazorchuk for very helpful discussions about the socular highest weight modules in the case of type \( A \). The authors thank the referees for the careful reading and comments.,True,False,False acknowledgement,10.31219/osf.io/ve8w4,doi10.31219/osf.io/ve8w4,"Acknowledgements: We are grateful to everyone who made our fieldwork possible. We thank Anagrafe Nazionale Antifascista, Associazione Nazionale Partigiani d'Italia, Associazione Ricreativa Culturale Italiana Milano, Istituto Nazionale per la Storia del Movimento di Liberazione in Italia, Francesco Colombo, Cristina Franceschi, Gloria Gennaro, Giacomo Lemoli, Andrea Ruggeri, and Stefano Costalli for helping us collect the data. For comments on previous versions, we thank Danilo Bolano, Stefano Costalli, Catherine De Vries, Giovanna Marcolongo, Zach Mampilly, Zach Parolin, Andrea Ruggeri, and participants in Leiden’s ‘Conflict Cluster Retreat’ and ‘Political Science Seminar’, UNU-WIDER Workshop ‘Institutional Legacies of Violent Conflict’, Bocconi’s ‘Politics & Institutions Clinic’, Wageningen’s ‘Spaces of Governance Workshop’, BIGSSS Lecture Series, and EUI’s ‘Political Behavior Colloquium’. Nicola Bariletto, Giulia di Donato, Sara Luxmoore, and Giuseppe Spatafora provided superb research assistance. This research has received support from UNU-WIDER and the ERC (Grant No. 864687). | This study has been prepared within the UNU-WIDER project Institutional legacies of violent conflict. | The Institute is funded through income from an endowment fund with additional contributions to its work programme from Finland and Sweden, as well as earmarked contributions for specific projects from a variety of donors.",True,False,False acknowledgement,10.21203/rs.3.rs-385814/v1,doi10.21203/rs.3.rs-385814/v1,"This work was supported by the Humanities and Social Science Research Project of the Ministry of Education of China (20YJC630138), the Anhui Natural Science Foundation (2008085QG345), the Fundamental Research Funding for Central Universities of China (WK2040000023), the New Liberal Arts Fund of University of Science and Technology of China (YD2040002010) and the National Natural Science Foundation of China (Grant number 71974177).",True,False,False acknowledgement,10.1101/666222,doi10.1101/666222,"This work was financially supported by the Department of Biotechnology (DBT), Government of India, grants BT/PR6963/BID/7/427/2012 and BT/BI/25/066/2012 awarded to DG.",True,False,False acknowledgement,10.1101/2023.03.27.534406,doi10.1101/2023.03.27.534406,"We thank George Sperling and Sebastian Schneegans for helpful discussion, and Robert Taylor for help with Bayesian hierarchical modelling. This research was supported by the Wellcome Trust (grant 106926 to PMB).",True,False,False acknowledgement,10.48550/arxiv.1703.07461,doi10.48550/arxiv.1703.07461,"F.J. Aragón was supported by MINECO of Spain and ERDF of EU, as part of the Ramón y Cajal program (RYC-2013-13327) and the I+D grant MTM2014-59179-C2-1-P. M. Ahookhosh, R.M.T. Fleming, and P.T. Vuong were supported by the U.S. Department of Energy, Offices of Advanced Scientific Computing Research and the Biological and Environmental Research as part of the Scientific Discovery Through Advanced Computing program, grant #DE-SC0010429. P.T. Vuong was also supported by the Austrian Science Foundation (FWF), grant I 2419-N32.",True,False,False acknowledgement,10.1101/2021.08.21.456929,doi10.1101/2021.08.21.456929,"This research was supported by the Singapore National Research Foundation and Ministry of Education under the Research Centre of Excellence Programme and by program grants 1102-IRIS-10-02 (S.W., R.B.H.W and S.C.S) from the National Research Foundation (NRF). The computational work was performed in part on resources of the National Supercomputing Centre (NSCC, Singapore) supported by Project 11000984. We thank our numerous colleagues from the Public Utilities Board (Republic of Singapore) for access to facilities and biomass which permitted this work to be undertaken.",True,False,False acknowledgement,10.1101/2020.03.16.994616,doi10.1101/2020.03.16.994616,"This work was supported by NYU Grossman School of Medicine Start-up package to C. J. and by the National Natural Science Foundation of China (Grant No. 31500664, 31770838) and Natural Science Foundation of Jiangsu Province (Grant No. BK20171338) to Lei Fang.",True,False,False acknowledgement,10.21203/rs.3.rs-839939/v1,doi10.21203/rs.3.rs-839939/v1,"This work was supported by the Nanjing Medical University Research Support Funding (grant number: 2018RC0003), National Natural Science Foundation of China (grant number: 82001994), Chinese PLA General Hospital Clinical Research Support Funding (grant number: 2018FC-WJFWZX-1-21), and Chinese PLA General Hospital Youth Development Project (grant number: QNC19058).",True,True,False acknowledgement,10.1364/opticaopen.26093791.v1,doi10.1364/opticaopen.26093791.v1,"Funding. This research was funded by the Natural Sciences and Engineering Research Council of Canada (grant number RGPIN-2018-05501) and the High Throughput and Secure Networks Challenge Program at the National Research Council of Canada (grant numbers HTSN-621, HTSN-644).",True,False,False acknowledgement,10.21203/rs.3.rs-1074506/v1,doi10.21203/rs.3.rs-1074506/v1,This work is supported by the National Key R\&D Program of China (GrantNo.2020YFC2008503).,True,False,False acknowledgement,10.21203/rs.3.rs-4099955/v1,doi10.21203/rs.3.rs-4099955/v1,This study was supported by the National Natural Science Foundation of China (82060551; 82060666).,True,False,False acknowledgement,10.21203/rs.3.rs-31250/v1,doi10.21203/rs.3.rs-31250/v1,"Supports for this study were provided, in part, by NIH grants U01-HL114494, R01- HL112986 and S10-RR022421, T32-HL-144461 and by Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (NRF-2017R1D1A1B03034157) and by the Korea Ministry of Environment (MOE) as the Environmental Health Action Program (RE201806039). The authors thank the SPIROMICS participants and participating physicians, investigators and staff for making this",True,False,False acknowledgement,10.48550/arxiv.2207.12564,doi10.48550/arxiv.2207.12564,"This material is based upon work supported by the National Science Foundation under grants no. PHY-1654219 and PHY-2116686. This work was supported in part by the National Science Foundation (NSF) within the framework of the MUSES collaboration, under grant number OAC-2103680, the US-DOE Nuclear Science Grant No. DE-SC0020633, US-DOE Office of Science, Office of Nuclear Physics, within the framework of the Beam Energy Scan Topical (BEST) Collaboration. J.N. is partially supported by the U.S. Department of Energy, Office of Science, Office for Nuclear Physics under Award No. DE-SC0021301.",True,False,False acknowledgement,10.48550/arxiv.0907.4634,doi10.48550/arxiv.0907.4634,"The authors thank the EPSRC U.K. GR/S76076, and QIPIRC U.K. for funding this work. JBBO acknowledges financial support from CAPES Brazil. AFAK acknowledges financial support from the University of Cairo.",True,False,False acknowledgement,10.1101/2023.05.23.541852,doi10.1101/2023.05.23.541852,"This project was supported by Grant from Kao Corporation (to M. Murayama); AMED-Brain/Minds Project (JP15dm0207001 to M. Murayama); Grant-in-Aid for Transformative Research Areas (B) from the JSPS (20B305 to M. Murayama); Grant-in-Aid for Young Scientists (A) from the JSPS (16H05929 to M. Murayama); Junior Research Associate program of RIKEN (to Y.S.). | RIKEN CBS-Kao Collaboration Center is partly funded by Kao corporation. This funder did not have any role in data collection and analysis, decision to publish, or preparation of the manuscript.",True,True,False acknowledgement,10.48550/arxiv.1205.6869,doi10.48550/arxiv.1205.6869,*Research supported partially by NSFC(No.11071223) and ZJNSF(No.Z6090150); Corresponding author. Email: wwf@zjnu.cn.,True,False,False acknowledgement,10.21203/rs.3.rs-180271/v1,doi10.21203/rs.3.rs-180271/v1,This study was funded by the EuroQol Research Foundation (EQ Project 20180230). The views expressed by the authors in the manuscript do not necessarily reflect the views of the EuroQol Group.,True,False,False acknowledgement,10.48550/arxiv.2110.10760,doi10.48550/arxiv.2110.10760,"*Discrete Mathematics Group, Institute for Basic Science, Daejeon, South Korea yoa@ibs.re.kr. The author is supported by the Institute for Basic Science (IBS-R029-C1) and in part by NSF Grant DMS-1945200.",True,False,False acknowledgement,10.48550/arxiv.2005.00191,doi10.48550/arxiv.2005.00191,"This material is based on research sponsored by DARPA under agreements FA8750-19-C-0003 and HR0011-18-C-0060, and by a gift from Intel Corp. The U.S. Government is authorized to reproduce and distribute reprints for Governmental purposes notwithstanding any copyright notation thereon. This research has also been sponsored by the Amazon Machine Learning Research Awards program and a GPU grant from Nvidia Corp. The views and conclusions contained herein are those of the authors and should not be interpreted as necessarily representing the official policies or endorsements, either expressed or implied, of DARPA, the U.S. Government, or the other sponsors.",True,False,False acknowledgement,10.21203/rs.3.rs-4183647/v1,doi10.21203/rs.3.rs-4183647/v1,A.D.B. and M.M. were funded by the Else Kröner Forschungskolleg Magdeburg (grant numbers 2017_Kolleg.07; TP3 and TP4). E.G. received funding from the Deutsche Forschungsgemeinschaft (grant number FOR2372).,True,False,False acknowledgement,10.48550/arxiv.2210.10343,doi10.48550/arxiv.2210.10343,"We thank the reviewers for their valuable comments. Yong Jiang and Lijie Wen are the corresponding authors. Xuming Hu, Aiwei Liu and Lijie Wen were partially supported by the National Key Research and Development Program of China (No. 2019YFB1704003), the National Nature Science Foundation of China (No. 62021002), Tsinghua BN Rist and Beijing Key Laboratory of Industrial Bigdata System and Application. Philip S. Yu was partially supported by the NSF under grants III-1763325, III-1909323, III-2106758, SaTC-1930941.",True,True,False acknowledgement,10.1101/2021.07.17.21260663,doi10.1101/2021.07.17.21260663,"This work was supported by the National Institutes of Health [1R25NS090978]; Marilyn Hilton Award for Innovation in MS from the Conrad N. Hilton Foundation; the National MS Society USA [FG-1908-34882]; the National MS Society USA [RG 4463A18]; National Institutes of Health [CO6 RR020092]; NIH/NIA AG054513 and Washington University Institute of Clinical and Translational Sciences–Brain, Behavioral and Performance Unit [TR000448]. Anne H. Cross was funded in part by the Manny and Rosalyn Rosenthal-Dr. John L. Trotter MS Center Chair of Barnes-Jewish Hospital Foundation, and the Leon and Harriet Felman Fund for Human MS Research.",True,False,False acknowledgement,10.1101/2022.11.17.516844,doi10.1101/2022.11.17.516844,"This work was funded by CIHR (CIHR PJT-175222, to IC), NSERC (NSERC RGPIN-2019-05271, to IC), CFI (258389, to IC), and by McGill University (130251, to IC). Andressa Lira received a Mitacs Global-Link fellowship (IT25163). Sahil Rao Sanghi received a fellowship from the Mitacs Research Training Award program (IT19603).",True,False,False acknowledgement,10.21203/rs.3.rs-1456392/v1,doi10.21203/rs.3.rs-1456392/v1,"The present study was supported by National Natural Science Foundation of China [grant number 81771589], the Program of Tianjin Science and Technology Plan [grant no. 18ZXDBSY00170] and the Public Health and Technology project of Tianjin [grant no. ZC20120, TJWJ2021ZD007].",True,False,False acknowledgement,10.1101/160739,doi10.1101/160739,"This work was supported by the CNRS, and by funding from the People Programme (Marie Curie Actions) of the EU Seventh Framework Programme FP7 to O.C. (REA agreement n°290257, « UPStream »), the Association pour la Recherche sur le Cancer to S.B. (ARC n°PJA 20141201831 and n°SFI20111203984), the French Ministry of Research (Investissements d'Avenir Program, Proteomics French Infrastructure, ANR-10-INBS-08) and the Fonds Européens de Développement Régional (FEDER), Toulouse Métropole, the Région Occitanie (fellowships to TM and BF) to O.B.-S. B.J.N was supported by the Marie Curie International Training Network « UPStream ». S.B. was initially supported by EMBO and HFSP Long Term Fellowships.",True,False,False acknowledgement,10.48550/arxiv.2206.09564,doi10.48550/arxiv.2206.09564,"Acknowledgments. This research was supported in part by the National Natural Science Foundation of China (62172246), the Open Project Program of State Key Laboratory of Virtual Reality Technology and Systems (VRLAB2021A05), and Youth Innovation and Technology Support Plan of Colleges and Universities in Shandong Province (2021KJ062).",True,False,False acknowledgement,10.1101/2023.10.09.561551,doi10.1101/2023.10.09.561551,"This work was supported by the Conselho Nacional de Desenvolvimento Científico e Tecnológico-CNPq (Process APQ-02381-21), Coordenação de Aperfeiçoamento de Pessoal de Nível Superior/Programa de Excelência Acadêmica-Finance Code 001 (CAPES ProEx grant 23038.019105/2016-86), CAPES-PrInt (process 88887.696147/2022-00) and Fundação de Amparo à Pesquisa do Estado de Minas Gerais—FAPEMIG (Process 402644/2021-2) for the financial support.",True,False,False acknowledgement,10.26434/chemrxiv.12616370.v1,doi10.26434/chemrxiv.12616370.v1,This work was supported by Vietnam National Foundation for Science & Technology Development (NAFOSTED) grant #104.99-2019.57.,True,False,False acknowledgement,10.21203/rs.3.rs-3935018/v1,doi10.21203/rs.3.rs-3935018/v1,"This research was funded by the US Geological Survey Northwest Climate Adaptation Science Center (NWCASC), which is managed by the USGS National Climate Adaptation Science Center under grant and cooperative agreement number UWSC14074. The conclusions and views presented in this work are those of the authors and should not be interpreted as representative of the views or policies of USGS, nor should any commercial products mentioned in the text be misinterpreted as being endorsed by USGS or NWCASC. The research was also funded by the USDA NIFA McIntire Stennis project (1019284) and USDA NIFA postdoctoral award awarded to RAA (2022-67012-37200).",True,False,False acknowledgement,10.21203/rs.3.rs-2368178/v1,doi10.21203/rs.3.rs-2368178/v1,The authors would like to express grateful appreciation to the funding support by the National Natural Science Foundation of China (grant number 81903377). | This work was supported by the National Natural Science Foundation of China (grant number 81903377). Author Jiao Wang has received the research support.,True,False,False acknowledgement,10.26434/chemrxiv-2023-dlbcj,doi10.26434/chemrxiv-2023-dlbcj,"SV acknowledges funding from the SNSF Starting Grant project (TMSGI2_211246). HB acknowledges funding from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)project no. 4181400. We thank Paola Gori-Giorgi for insightful discussions which greatly improved the present work.",True,False,False acknowledgement,10.1101/2023.10.27.564453,doi10.1101/2023.10.27.564453,"This work was supported by the Agricultural Science and Technology Innovation Program, Chinese Academy of Agricultural Sciences (ASTIP-TRI02 to Y.G.), the National Natural Science Foundation of China (32270332 to Y.G. and 31970204 to W.L.), the Graduate School of Chinese Academy of Agricultural Sciences (Z. Z), Wageningen University Joint PhD Programme and the European Research Council (ERC) under the EU Horizon 2020 Research and Innovation Programme (grant agreement 724321 to C.T.).",True,False,False acknowledgement,10.1101/248807,doi10.1101/248807,"These studies were supported by the São Paulo Research Foundation FAPESP (2015/23898-8), and by a Sir Henry Dale research fellowship to Dr A. Mielgo funded by the Wellcome Trust and the Royal Society (grant number 102521/Z/13/Z).",True,False,False acknowledgement,10.1101/2023.08.15.553375,doi10.1101/2023.08.15.553375,"Acknowledgements: This work was supported by James Simons Foundation Grant 543057SPI, the National Institutes of Health grant R01MH062349, and the ONR grant N00014-23-1-2040. YL thanks Aldo Battista, Vishwa Goudar, Lucas Tian, Kenneth Kay, Haohong Li's lab, Yu Qi's lab, Sage Chen, Yi Sun's lab, Jianguang Ni's lab, Bo Shen, Shuo Chen, Xiaohan Zhang and all members of Xiao-Jing Wang's lab for helpful discussions and comments on the manuscript.",True,False,False acknowledgement,10.48550/arxiv.2212.13147,doi10.48550/arxiv.2212.13147,This research was partially supported by the National Science Centre (Poland) Grant No. 2017/27/B/ST1/00100.,True,False,False acknowledgement,10.1101/373209,doi10.1101/373209,"The authors acknowledge the support of the Medical Research Council (MR/M010694/1) (RC), and the Biotechnology and Biological Sciences Research Council (BB/M003671/1) (RC) and the COST Action BM1404 Mye-EUNITER (www.mye-euniter.eu), supported by COST (European Cooperation in Science and Technology).",True,False,False acknowledgement,10.48550/arxiv.2306.08938,doi10.48550/arxiv.2306.08938,"This work was supported by the National Key Research and Development Program of China (2020YFB1807700), and the National Natural Science Foundation of China (NSFC) under Grant No. 62071356 and No. 62201414, and the fundamental research funds for the central universities under grant ZYTS23175.",True,False,False acknowledgement,10.48550/arxiv.1612.07360,doi10.48550/arxiv.1612.07360,"This research was supported in part by NSF IIS-1212928, DARPA, Adobe Research and a Google Faculty grant. We thank Subhashini Venugopalan for providing an implementation of S2VT [22] and Stan Sclaroff for many useful discussions.",True,False,False acknowledgement,10.48550/arxiv.2312.01690,doi10.48550/arxiv.2312.01690,"We acknowledge JSPS KAKENHI JP22K11919, JP22H00516, JP-JMJCR1913 for financial support. JP22K14274, and JST CREST",True,False,False acknowledgement,10.48550/arxiv.1907.11066,doi10.48550/arxiv.1907.11066,"This work has been partially funded through the project ""Research on Vision Sensor Technology Fusing Multidimensional Parameters"" (111303-I21805) by Hangzhou SurImage Technology Co., Ltd and supported by Hangzhou KrVision Technology Co., Ltd (krvision.cn).",True,False,False acknowledgement,10.26434/chemrxiv-2022-15lfr-v2,doi10.26434/chemrxiv-2022-15lfr-v2,"We thank the laboratory of Dr. Sven Traxel (Merck Element Analytics) for conducting and evaluating the ICP-MS analyses; the Chemical Synthesis Centre for Doctoral Training (funded by EPSRC (EP/L015366/1), AstraZeneca, GlaxoSmithKline, Syngenta, UCB, Ziylo and the University of Bristol) for the provision of a PhD studentship (BJSR); the EPSRC for a part studentship and AstraZeneca for CASE top-up funding (H.M.O'B.), the Technology Enhanced Chemical Synthesis Centre for Doctoral Training, funded by EPSRC (EP/S024107/1), [AstraZeneca, Astex, Bayer, GlaxoSmithKline, Syngenta, Vertex] and the University of Bristol, for the provision of a PhD studentship (P.R.D.-D.) and the UK Catalysis Hub for resources and support provided via our membership of the UK Catalysis Hub Consortium and funded by EPSRC grant: EP/R026939/1, EP/R026815/1, EP/R026645/1, EP/R027129/1 or EP/M013219/1(biocatalysis)).",True,False,False acknowledgement,10.48550/arxiv.2411.15420,doi10.48550/arxiv.2411.15420,"This work is supported by MOE (Ministry of Education in China) Liberal Arts and Social Sciences Foundation 24XJCZH024, General Project of Education Department of Shaanxi Provincial Government under Grant 22JK058, Xi'an Key Laboratory of Aircraft Optical Imaging and Measurement Technology Open Fund Project 2023-006, National Natural Science Foundation of China 62173270 and 52367015, China Postdoctoral Science Foundation under Grant 2024M750897, and Jiangxi Provincial Natural Science Foundation under Grants 20224BAB204051 and 20232BAB214064.",True,False,False acknowledgement,10.1101/2020.07.15.200709,doi10.1101/2020.07.15.200709,"This work was funded by the Wellcome Trust Translational Award (080083/Z/06/Z ) and Seeding Drug Discovery Award (91050/Z/10/Z) and we acknowledge the support of their Seeding Drug Discovery team, in particularly Dr Sarah Hardy and Prof Chas Bountra, for useful discussions. This work was also funded by Medical Research Council (MRC) Programme grants MC_UU_12022/1 and MC_UU_12022/8 to ARV, and a research grant from Astex Pharmaceuticals.",True,False,False acknowledgement,10.1101/232116,doi10.1101/232116,"We Thank Carolina ATF Mendonça for helpful contributions. FBS was supported by the Higher Education Personnel Improvement Coordination (CAPES) and National Council for Scientific and Technological Development (CNPq - Grant Process No. 141715/2017-0). VGC was funded by Grant 2016/13998-8 and 2017/09662-7, São Paulo Research Foundation (FAPESP) and Higher Education Personnel Improvement Coordination (CAPES). VMO was supported by the National Council for Scientific and Technological Development (CNPq - Grant Process No. 141985/2013-5). VBPL was supported by the National Council for Scientific and Technological Development (CNPq) and FAPESP Grant 2014/06862-7 and 2016/19766-1. We also thank the Center for Scientific Computing (NCC/GridUNESP) of São Paulo State University (UNESP) for computational resources. This work was supported by the Wellcome Trust (grant number WT095195). JC is a Wellcome Trust Senior Research Fellow.",True,False,False acknowledgement,10.48550/arxiv.2108.00182,doi10.48550/arxiv.2108.00182,"Acknowledgements. This work was supported by the research unit: ""Dynamical systems and their applications"", (UR17ES21), Ministry of Higher Education and Scientific Research, Faculty of Science of Bizerte, Bizerte, Tunisia.",True,False,False acknowledgement,10.21203/rs.3.rs-3361651/v1,doi10.21203/rs.3.rs-3361651/v1,"The authors are thankful to Department of Biotechnology, Government of India for the funding provided to carry out the work (DBT Reference: BT/IN/Indo-UK/AMR-Env/02/JS/2020-21).",True,False,False acknowledgement,10.21203/rs.3.rs-258126/v1,doi10.21203/rs.3.rs-258126/v1,"The authors thank the National Key Research and Develop-ment Program of China (2016YFA0602900), the National Nat-ural Science Foundation of China (22071063), and the Fundamental Research Funds for the Central Universities (2019PY05 and x2hgD2200520) for financial support.",True,False,False acknowledgement,10.48550/arxiv.2009.05445,doi10.48550/arxiv.2009.05445,"J.H. is with ICTEAM institute, UCLouvain (Belgium) julien.hendrickx@uclouvain.be. His work was was supported by the ""RevealFlight"" Concerted Research Action (ARC) of the Federation Wallonie-Bruxelles, by the Incentive Grant for Scientific Research (MIS) ""Learning from Pairwise Comparisons"" of the F.R.S.-FNRS, and by a WBI World Excellence Fellowship. M.R. is with Facebook AI Research, Montreal, Canada, mikerabbat@fb.com.",True,False,False acknowledgement,10.21203/rs.2.18197/v1,doi10.21203/rs.2.18197/v1,"This study was funded by the Danish Rheumatism Association, the KV-foundation, Odense University Hospital and the University of Southern Denmark. The funding had no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.",True,False,False acknowledgement,10.48550/arxiv.1003.4465,doi10.48550/arxiv.1003.4465,The first author was partially supported by NSF grant DMS-0757907 and by the Alfried Krupp prize. The final details of the paper were completed at the AIM workshop “Mock modular forms in combinatorics and arithmetic geometry.” The authors would like to thank AIM for their support and for supplying a stimulating work environment.,True,False,False acknowledgement,10.1101/2023.06.09.543079,doi10.1101/2023.06.09.543079,"This work is supported by NIH F31 AI156949 (K.H.), NIH R01 AI042347 (M.K.W.), and the Howard Hughes Medical Institute (M.K.W.).",True,False,False acknowledgement,10.21203/rs.2.11920/v3,doi10.21203/rs.2.11920/v3,"This project received funding from: University of Otago (Dept. of Psychology, William James Building, 275 Leith Walk, Dunedin 9016). University of Otago Wellington (Dean’s Department; Dept. of Psychological Medicine, 23 Mein St, Newtown, Wellington 6242). A PhD scholarship was provided by the Dean’s Department, ultimately provided by the Ministry of Health, New Zealand.",True,False,False acknowledgement,10.26434/chemrxiv-2023-j1bxh,doi10.26434/chemrxiv-2023-j1bxh,DP was supported by the Deutsche Forschungsgemeinschaft through the CMFI Cluster of Excellence (EXC 2124) and the Collaborative Research Center CellMap (TRR 261). PS was supported by the European Union Horizon 2020 Program through a Marie Skłodowska-Curie fellowship (101108450-MeStaLeM).,True,False,False acknowledgement,10.48550/arxiv.2401.14651,doi10.48550/arxiv.2401.14651,"The authors are grateful to the NSERC and the CRC Program for their support. RM also acknowledges the support of the BERC 2022-2025 program and the Spanish Ministry of Science, Innovation and Universities through the Agencia Estatal de Investigacion (AEI) BCAM Severo Ochoa excellence accreditation SEV-2017-0718 and the Basque Government fund AI in BCAM EXP. 2019/00432. This research was enabled in part by support provided by SHARCNET and the Digital Research Alliance of Canada.",True,False,True acknowledgement,10.48550/arxiv.2411.11992,doi10.48550/arxiv.2411.11992,This work was supported by the U.S. Department of Energy under Contract No. DE-SC0012704 and by Laboratory Directed Research and Development (LDRD) funds from Brookhaven Science Associates.,True,False,False acknowledgement,10.48550/arxiv.0904.1614,doi10.48550/arxiv.0904.1614,"Acknowledgements: This work has spurred out of a joint project with Barak Weiss, in which we attempted to answer some of the still open questions asked in the last section of the paper. Barak's thoughtful remarks and insights are gratefully acknowledged. Thanks are also due to Gregory Margulis, Elon Lindenstrauss, Nimish Shah and the reviewer for useful comments. The author was supported by NSF Grant DMS-0801064.",True,False,False acknowledgement,10.1101/2023.06.19.545607,doi10.1101/2023.06.19.545607,"This research was supported by the Consejo Nacional de Investigaciones Científicas y Técnicas, Grant No. 11220200102316CO, Agencia Nacional de Promoción de la Investigación, el Desarrollo Tecnológico y la Innovación, Grant No. PICT-2021-I-A- 00957, and Universidad de Buenos Aires.",True,False,False acknowledgement,10.26434/chemrxiv-2022-17k83,doi10.26434/chemrxiv-2022-17k83,Funding from Canada First Excellence Research Fund through University of Alberta's Future Energy systems and through the Discovery Grants program of the Natural Sciences and Engineering Research Council of Canada (NSERC) are acknowledged. Vinay Prasad acknowledges support from the Jaffer professorship in Process Systems and Control Engineering. Computations reported in this work were supported by Compute Canada's through the resources for research groups competition.,True,False,False acknowledgement,10.48550/arxiv.2002.04564,doi10.48550/arxiv.2002.04564,"This work was supported by the National Institutes of Health grant R01 GM117590, awarded under the Joint DMS/NIGMS Initiative to Support Research at the Interface of the Biological and Mathematical Sciences.",True,False,False acknowledgement,10.1101/2023.09.11.557107,doi10.1101/2023.09.11.557107,"The authors thank all the volunteers for their participation in the study and anonymous reviewers for their insightful comments and suggestions. This work was supported by the STI2030-Major Projects (2021ZD0200500, 2022ZD0213300), National Natural Science Foundation of China (32271145, 81871425), Fundamental Research Funds for the Central Universities (2017XTCX04), Open Research Fund of the State Key Laboratory of Cognitive Neuroscience and Learning (CNLZD2101). Data in this publication were provide (in part) by the Human Connectome ProjectDevelopment (HCP-D), which is supported by the National Institute Of Mental Health of the National Institutes of Health under Award Number U01MH109589 and by funds provided by the McDonnell Center for Systems Neuroscience at Washington University in St. Louis.",True,True,False acknowledgement,10.48550/arxiv.0908.4579,doi10.48550/arxiv.0908.4579,Bates and Sottile supported by the Institute for Mathematics and Its Applications. Bates supported by NSF grant DMS-0914674. Sottile supported by the NSF CAREER grant DMS-0538734 and NSF grant DMS-0701050.,True,False,False acknowledgement,10.21203/rs.3.rs-443100/v1,doi10.21203/rs.3.rs-443100/v1,"Sections of the article about measurement with non-demolition filtration and filtration mapping were written by A. Kozubov and A. Gaidash, Section about semi-demolition measurement by A. D. Kiselev and G. Miroshnichenko. The work of A. Kozubov and A. Gaidash is supported by the Russian Science Foundation under grant No. 20-71-10072 and performed in Steklov Mathematical Institute of Russian Academy of Sciences. The work of A. D. Kiselev was financially supported by the Russian Ministry of Education (Grant No. 2019-0903). Also we are very grateful to Alena Ivanova for inestimable help with figure preparation.",True,False,False acknowledgement,10.22541/au.163252821.18680330/v1,doi10.22541/au.163252821.18680330/v1,This research was supported by the Korea Institute of Science and Technology (KIST) Institutional Program [grant number 2E30170] and the National Research Foundation of Korea (NRF) funded by the Ministry of Science and ICT (Information & Communication Technology) [grant number NRF-2020M1A2A2080847].,True,False,False acknowledgement,10.48550/arxiv.2305.18546,doi10.48550/arxiv.2305.18546,"J.P.G.R. acknowledges financial support by the European Research Council under the Grant Agreement No. 721675 ""Regularity and Stability in Partial Differential Equations (RSPDE)"". D.R. acknowledges financial support by the European Research Council (ERC Starting Grant No. 101078782).",True,False,False acknowledgement,10.48550/arxiv.2408.10070,doi10.48550/arxiv.2408.10070,"We would like to thank M. Beccaria, S. Ekhammar, L. Guerrini, M. Lagares, S. Penati and V. Velizhanin for useful discussions and comments. The work of SG is supported in part by the US NSF under Grant No. PHY-2209997. SAK acknowledges support of the President's PhD Scholarship of Imperial College London. AAT is supported by the STFC grant ST/T000791/1. Part of this work was done while AAT was attending the meeting ""Integrability in low-supersymmetry theories"" (Trani, 2024) funded by the COST Action CA22113, by INFN and by Salento University.",True,False,False acknowledgement,10.21203/rs.2.9711/v3,doi10.21203/rs.2.9711/v3,"This work was supported by National Natural Science Foundation of China (grant No., 31761143010, 31460368 and U1405213), National Postdoctoral Program for Innovative Talents (No. BX201600030) and the China Agriculture Research System (No. CARS-10-P20). The funders did not have any role in the design of the study, collection, analysis and interpretation of the data, decision to publish, and in writing the manuscript.",True,False,False acknowledgement,10.21203/rs.3.rs-656233/v1,doi10.21203/rs.3.rs-656233/v1,This study was financially supported by Liao Ning Revitalization Talents Program (XLYC1905010) and Key R&D Program of Liao Ning Province (2019JH2/10200004). XXW is supported by State Key Laboratory of North China Crop Improvement and Regulation.,True,False,True acknowledgement,10.21203/rs.3.rs-1632165/v1,doi10.21203/rs.3.rs-1632165/v1,"This work was supported by National Key Research and Development Project of China (2021YFA1000102, 2021YFA1000103), Natural Science Foundation of China (Grant Nos. 61873280, 61972416), Taishan Scholarship (tsqn201812029), Foundation of Science and Technology Development of Jinan (201907116), Shandong Provincial Natural Science Foundation(ZR2021QF023), Fundamental Research Funds for the Central Universities (21CX06018A), Spanish project PID2019-106960GB-I00, Juan de la Cierva IJC2018-038539-I.",True,False,False acknowledgement,10.26434/chemrxiv.14382056.v1,doi10.26434/chemrxiv.14382056.v1,The authors thank Drs. C. Park and E. C. Dykhuizen for critical review of the manuscript. We thank C. Park for assistance with protein expression and purification. This work was supported by NIH 1R35GM128894-01 to C.J.K. The Purdue University Mass Spectrometry and Genome Sequencing Shared Resources are supported by P30 CA023168 from the National Institutes of Health.,True,False,False acknowledgement,10.21203/rs.3.rs-988334/v1,doi10.21203/rs.3.rs-988334/v1,Funding This work was supported by the National Nature Science Foundation of China (No. 41807471) and the Open Research Fund Program of MNR Key Laboratory for Geo-Environmental Monitoring of Great Bay Area (SZU51029202010).,True,False,False acknowledgement,10.21203/rs.3.rs-2721021/v1,doi10.21203/rs.3.rs-2721021/v1,The authors disclosed receipt of the following financial support for the research and authorship of this article: this research was supported by the National Natural Science Foundation of China to Dr. TY Zhang [grant No. 82001324].,True,False,False acknowledgement,10.1101/2023.09.15.558024,doi10.1101/2023.09.15.558024,"This study was supported by a NSF Postdoctoral Research Fellowship in Biology to J.B.M. (#2010649), a Campbell Scholars Program undergraduate research grant to M.E.P., a University of Illinois Research Board Grant to E.K.F. (RB21025), and University of Illinois Urbana-Champaign laboratory start-up funds to E.K.F.",True,False,False acknowledgement,10.21203/rs.3.rs-3178497/v1,doi10.21203/rs.3.rs-3178497/v1,Funding; This work was supported by the National Natural Science Foundation of China (Grant No. 52162040).,True,False,False acknowledgement,10.48550/arxiv.1807.04682,doi10.48550/arxiv.1807.04682,"Supported in part by NSF Grant CCF-1422152 and CAREER-1553166. | Supported by Moprexprogmol CNRS MI grant. | Supported in part by JST Program to Disseminate Tenure Tracking System, MEXT, Japan, No. 6F36, JSPS Grant-in-Aid for Young Scientists (A) No. 16H05854, and JSPS Bilateral Program No. YB29004",True,False,True acknowledgement,10.21203/rs.3.rs-44886/v2,doi10.21203/rs.3.rs-44886/v2,This work was funded through a Medical Research Council doctoral training award. | The Health Services Research Unit is funded by the Chief Scientist Office of the Scottish Government Health and Social Care Directorates.,True,False,False acknowledgement,10.1101/2022.09.13.22279424,doi10.1101/2022.09.13.22279424,"Source of funding: This study was supported by JSPS KAKENHI [grant number JP 16H05216]. The funders had no role in the study design, analysis and interpretation of the data, writing of the manuscript, or the decision to submit the manuscript for publication.",True,False,False acknowledgement,10.48550/arxiv.2502.00467,doi10.48550/arxiv.2502.00467,"S.G. and R.S. acknowledge support by the ERDF of the European Union and by 'Fonds of the Hamburg Ministry of Science, Research, Equalities and Districts (BWFGB)'. J.F. acknowledges support by the Czech Science Foundation under Grant No. 21-23120S.",True,False,False acknowledgement,10.1101/2022.05.16.492147,doi10.1101/2022.05.16.492147,"This work was supported by awards from the NIH (HL136377-01 and DK110098) to K.A. R.D. was supported by the Larry L. Hillblom Foundation Fellowship Research Grant (2019-D-004-FEL). The sequencing was carried out at the UC Davis Genome Center DNA Technologies and Expression Analysis Core, supported by NIH Shared Instrumentation Grant 1S10OD010786-01. The graphical abstract was made using Biorender.com. We would like to thank S. Layer for ongoing inspiration.",True,True,False acknowledgement,10.48550/arxiv.1910.05084,doi10.48550/arxiv.1910.05084,"Ch.F. was partly supported by the US-Israel Binational Science Foundation, grant number 2014055, AFOSR, grant DMS-1265524, and NSF, grant FA9550- 12-1-0425. S.I. was partly supported RFBR, grant 20-01-00070, M.L. was supported by Academy of Finland, grants 273979 and 284715, and H.N. was partly supported by NSF grant DMS-1620102 and a Ramanujan Fellowship and a Swarna Jayanti fellowship.",True,False,False acknowledgement,10.21203/rs.2.16155/v1,doi10.21203/rs.2.16155/v1,Funding This work was supported by the National Research Foundation of Korea (NRF-2018R1D1A1A02085712) grant funded by the Korea government.,True,False,False acknowledgement,10.48550/arxiv.1702.04222,doi10.48550/arxiv.1702.04222,"The research carried out by G. Alessandrini and E. Sincich for the preparation of this paper has been supported by FRA 2016 ""Problemi inversi, dalla stabilità alla ricostruzione"" funded by Università degli Studi di Trieste. E. Sincich has been also supported by Gruppo Nazionale per l'Analisi Matematica, la Probabilità e le loro Applicazioni (GNAMPA) by the grant "" Problemi Inversi per Equazioni Differenziali"". E. Sincich is grateful for the support and the hospitality of the Department of Mathematics and Statistics of the University of Limerick, where part of this work has been carried over. R. Gaburro and E. Sincich acknowledge the support of ""Programma professori visitatori"", Istituto Nazionale di Alta Matematica Francesco Severi (INdAM) during the Fall 2016/17. R. Gaburro wishes to acknolwedge also the support of MACSI, the Mathematics Applications Consortium for Science and Industry (www.macsi.ul.ie), funded by the Science Foundation Ireland Investigator Award 12/IA/1683. M.V de Hoop was partially supported by the Simons Foundation under the MATH + X program, the National Science Foundation under grant DMS-1559587, and by the members of the Geo-Mathematical Group at Rice University.",True,False,False acknowledgement,10.26434/chemrxiv-2024-cl867,doi10.26434/chemrxiv-2024-cl867,"This work was supported by CAPES, CNPq, INCT-FCx, and FAPERGS.",True,False,False acknowledgement,10.21203/rs.3.rs-2964876/v1,doi10.21203/rs.3.rs-2964876/v1,"Xie gang reports financial support was provided by General project of national Natural Science Foundation of China. Xie gang reports financial support was provided by Study on anodic electrochemical performance of aluminum air battery alloy. Xie gang reports financial support was provided by Yunnan Provincial Science and Technology Talents and Platform Project. Yu xiaohua reports financial support was provided by Yunnan Ten Thousand Plan. | This work has been supported by the General Program of the National Natural Science Foundation of China (51774160).This work has received support from the National Natural Science Foundation of China (52022013,51974031).This work has received support from the Yunnan Provincial Ten Thousand Talents Plan Project Fund (YNWR-QNBJ-2018-327)",True,False,False acknowledgement,10.1101/403253,doi10.1101/403253,"We thank J. Saras, P.-E. Lund, and A. Thonig (Uppsala University) for expert technical assistance, and D. Machado (University of La Laguna) for spike analysis software. The work was supported by the Swedish Research Council, Diabetes Wellness Network Sweden, Swedish Diabetes Society, European Foundation for the Study of Diabetes, Swedish Society for Medical Research, Hjärnfonden, and the NovoNordisk and Family Ernfors foundations. N.R.G. was supported by the European Foundation for the Study of Diabetes (EFSD)/Lilly Research Fellowship and the Swedish Society for Medical Research (SSMF). SD was supported by grants from the Norwegian Research Council (NFR) and Helse-Bergen. Human islets for research were provided by the Nordic Network for Islet Transplantation (supported by JDRF grant 31-2008-416, ECIT Islet for Basic Research Program).",True,False,False acknowledgement,10.31234/osf.io/tgnzm,doi10.31234/osf.io/tgnzm,Paul Seli was supported by a Social Sciences and Humanities Research Council Banting Post-Doctoral Fellowship. Michael J. Kane was supported by award DRL1252444 from the National Science Foundation. Jonathan Smallwood was supported by award 646927 from the European Research Council. Daniel L. Schacter was supported by a National Institute on Aging grant R01 AG08441. David Maillet was supported by a Canadian Institutes of Health Research (CIHR) fellowship. Jonathan Schooler was supported by an Institute of Educational Science grant # R305A170445. Daniel Smilek was supported by a Natural Sciences and Engineering Research Council discovery grant 06459.,True,False,False acknowledgement,10.1101/827162,doi10.1101/827162,This work was supported in part by grant R01 MH117646-02S1 from the National Institutes of Health to T.L. Itsik Pe'er is supported by grants CCF-1547120 and DGE-1144854 from the National Science Foundation as well as grant U54CA209997 from the National Institutes of Health.,True,False,False acknowledgement,10.1101/2021.10.14.464479,doi10.1101/2021.10.14.464479,"This work was supported by the grants from National Natural Science Foundation of China (31970053 and 32170059 to T.H., 21632007 to S.L), the National Key Research and Development Program of China (2018YFA0901900), and the Startup fund for Youngman Research at SJTU (SFYR at SJTU), respectively.We would like to thank the Instrumental Analysis Center of Shanghai Jiao Tong University and Shanghai Institute of Organic Chemistry for obtaining the NMR data.",True,False,False acknowledgement,10.48550/arxiv.1703.00927,doi10.48550/arxiv.1703.00927,"This research benefited from the support of the FMJH Program PGMO under grant HEAVY.NET and from the support of EDF, Thales, and Orange. R. Colini-Baldeschi and M. Scarsini are members of GNAMPA-INdAM. R. Cominetti and P. Mertikopoulos gratefully acknowledge the support and hospitality of LUISS during a visit in which this research was initiated. R. Cominetti's research is also supported by FONDECYT 1130564 and Núcleo Milenio ICM/FIC RC130003 ""Información y Coordinación en Redes."" P. Mertikopoulos was partially supported by the ECOS/CONICYT Grant C15E03 and the Huawei HIRP Flagship project ULTRON. P. Mertikopoulos and M. Scarsini also gratefully acknowledge the support and hospitality of FONDECYT 1130564 and Núcleo Milenio ""Información y Coordinación en Redes.""",True,False,False acknowledgement,10.2139/ssrn.4902450,doi10.2139/ssrn.4902450,"This work was supported by the United States National Air Force Office of Scientific Research (AFOSR) under Contract No. FA9550-22-1-0030 and the United States National Science Foundation (NSF) under Grant No. CAREER-1653059. This work used Stampede3 at the Texas Advanced Computing Center (TACC) at The University of Texas at Austin through allocation MCH230053 from the Advanced Cyberinfrastructure Coordination Ecosystem: Services \& Support (ACCESS) program, which is supported by National Science Foundation grants \#2138259, #2138286, #2138307, #2137603, and #2138296 (Boerner et al., 2023). This content is solely the responsibility of the authors and does not necessarily represent the official views of AFOSR, NSF, TACC, or ACCESS. The authors would like to thank Dr. S. Lamont and Professor F. Vernerey (CU Boulder) for orchestrating the implementation of the Transient Network Theory (TNT) package into LAMMPS based on the work of Wagner et al. (2021).",True,False,False acknowledgement,10.48550/arxiv.1706.01833,doi10.48550/arxiv.1706.01833,"This work is supported by CME Group. We thank them for providing us with valuable data and we are grateful for their donation of the Maxeler FPGA hardware. We especially acknowledge Ryan Eavy, Executive Director, Architectures at CME Group for his support and introduction to Maxeler.",True,True,False acknowledgement,10.26434/chemrxiv-2021-rjzdn,doi10.26434/chemrxiv-2021-rjzdn,"This research was supported by the U.S. National Science Foundation through grant CBET-1914543 and by U.S. DOE award DE-AC05-76RL01830 through PNNL subcontract 535264. The authors thank Martin Jin, Emily Kerr, Daniel Pollack, and Jinxu Gao for valuable discussions.",True,False,False acknowledgement,10.48550/arxiv.math/0601381,doi10.48550/arxiv.math/0601381,"Acknowledgements. We are grateful to F. Klopp for helping us to find some references. The first author was supported by a postdoctorial fellowship from Ecole Polytechnique. She also thanks Y. Colin de Verdière for an interesting discussion around random functions. The second author is grateful to the Japan Society for the promotion of Sciences and to the Dept of Mathematics of Tokyo Unversity for offering excellent working conditions during the month of July, 2005. He also thanks E. Servat for a very interesting remark. We also thank the referee for many detailed remarks that have helped to improve the presentation.",True,False,False acknowledgement,10.1101/270298,doi10.1101/270298,"This work was supported by the National Science Foundation (Grant IOS-1456482 to F.T.) and Michigan AgBioResearch (F.T.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. | This work was supported by the Program Area: Plant Health and Production and Plant Products [Grant no. 2015-67013-22932 to F.T.] from the USDA National Institute of Food and Agriculture. Any opinions, findings, conclusions, or recommendations expressed in this publication are those of the authors and do not necessarily reflect the view of the U.S. Department of Agriculture.",True,False,False acknowledgement,10.48550/arxiv.2304.05268,doi10.48550/arxiv.2304.05268,"This research has been conducted as part of the FIBISS project which is funded by the German Research Council (DFG, project number: KL 2869/5-1). We thank the anonymous reviewers for their valuable feedback.",True,False,False acknowledgement,10.21203/rs.3.rs-131425/v1,doi10.21203/rs.3.rs-131425/v1,"This work was supported by grants from the Natural Science Foundation of China (82071478, 81960260), the Natural Science Foundation of Shandong Province (ZR2020QH129), the Natural Science Foundation of Hubei Province (2020CFB857) and Supporting Fund for Teachers' research of Jining Medical University (JYFC2019FKJ034).",True,False,False acknowledgement,10.1101/2021.03.11.434673,doi10.1101/2021.03.11.434673,"Funding: This research was supported by the National Institutes of Health (PI: KCC, R24-RR017441, and PI: KCC, R24-OD018559), the Jake Gittlen Laboratories for Cancer Research, the Penn State College of Medicine Zebrafish Functional Genomics Core, the Huck Institutes of the Life Sciences and the Institute for Cyber Science, Penn State University, and the Pennsylvania Department of Health Tobacco CURE Funds. The Pennsylvania Department of Health specifically disclaims responsibility for any analysis, interpretations, or conclusions. This research used resources of the Advanced Light Source, a U.S. DOE Office of Science User Facility under contract no. DE-AC02-05CH11231.",True,False,False acknowledgement,10.1101/452268,doi10.1101/452268,"The authors thank Alice Feurtey, Asger Hobolth, Bernhard Haubold, Eva Stukenbrock, Fabian Klötzl, Kai Zeng, Pier Palamara and Stephan Schiffels for fruitful discussions about this work.JYD acknowledges funding from the Max Planck Society. This work was supported by a grant from the German Research Foundation (Deutsche Forschungsgemeinschaft) attributed to JYD",True,False,False acknowledgement,10.48550/arxiv.1501.00731,doi10.48550/arxiv.1501.00731,"The work was supported by Grants No. VEGA 1/0457/12 and No. APVV-0050-11, by ""NewCompStar"", COST Action MP1304, and by Polatom ESF network.",True,False,False acknowledgement,10.48550/arxiv.2206.11045,doi10.48550/arxiv.2206.11045,This work has received funding from the DFG's Reinhart Koselleck project No. 442218748 (AUDI0NOMOUS) and from the EU's Horizon 2020 grant agreement No. 826506 (sustAGE).,True,False,False acknowledgement,10.21203/rs.3.rs-1585941/v1,doi10.21203/rs.3.rs-1585941/v1,Funding: This study was not funded by a particular source. The de-identified dataset used in this study was generated from a grant R305A160114 (Lyon and Cook) awarded by the Institute of Education Sciences. The content is solely the responsibility of the authors and does not necessarily represent the official views of the Institute of Education Sciences.,True,True,False acknowledgement,10.1101/297242,doi10.1101/297242,We thank Rodrigo Amezcua Correa for providing a multi-mode fiber and Jeffrey Moffitt for fruitful discussion regarding a flat-field illumination. This work was supported by DARPA (HR00111720066) and CREOL at University of Central Florida.,True,False,False acknowledgement,10.1101/2020.10.12.336552,doi10.1101/2020.10.12.336552,"This work was supported by PHS grants DA09082 (RJV), T32MH017168 Training Program in Behavioral and Cognitive Neuroscience (HMG) and F31MH10521 NIMH NRSA for Individual Predoctoral Fellowships (HMG). The authors declare no conflict of interest.",True,False,False acknowledgement,10.21203/rs.3.rs-744869/v1,doi10.21203/rs.3.rs-744869/v1,"This work was supported by Japan Agency for Medical Research and Development (AMED) under Grant number 20ak0101068h0004; the Japanese Ministries of Education, Culture, Sports, Science and Technology, and of Health, Labor and Welfare (JSPS KAKENHI) under Grant number JP19K07729; and the Japan Research Foundation for Clinical Pharmacology.",True,False,False acknowledgement,10.21203/rs.3.rs-1945879/v1,doi10.21203/rs.3.rs-1945879/v1,"J.L.P-G. and A.L.P. were supported by the ERDF/Spanish Ministry of Science, Innovation and Universities-State Research Agency (Grant RTI2018-096246-B-I00, to ALP), Consejería de Economía, Conocimiento, Empresas y Universidad, Junta de Andalucía (Grant P18-RT-2413, to A.L.P.) and ERDF/ Counseling of Economic transformation, Industry, Knowledge and Universities (Grant B-BIO-84-UGR20, to A.L.P.) and the Science and Engineering Research Board (SERB, India; Grant MTR/2019/000392, to ANN). Financial support from Horizon 2020 EU_FT-ICR_MS project (731077), EU/MEYS projects BioCeV (CZ.1.05/1.1.00/02.0109) and CIISB LM2018127 are acknowledged.",True,False,False acknowledgement,10.21203/rs.3.rs-889945/v1,doi10.21203/rs.3.rs-889945/v1,"Acknowledgements : KP, AG, and PV acknowledge CSIR, New Delhi for financial support for this research (MLP0027). TKM thanks CSIR for a project fellowship and NS thanks to UGC for Senior Research Fellowship. RAS acknowledges DST, India for Inspire Fellowship. PBS and SS acknowledge the Department of Science & Technology for financial support. The Analytical and Environmental Science Division and Centralized Instrument Facility of the Institute is acknowledged for providing instrumentation facilities.",True,False,False acknowledgement,10.1101/2021.12.09.471759,doi10.1101/2021.12.09.471759,"The work was carried out within the framework of the State Assignment of Institute of Theoretical and Experimental Biophysics, Russian Academy of Sciences (No. 075-00381-21-00), and was supported by the Russian Science Foundation (project No. 20-65-46035).",True,False,False acknowledgement,10.48550/arxiv.2106.08203,doi10.48550/arxiv.2106.08203,"The first author acknowledges supports from Louisiana Board of Regents, grant # LEQSF(2017-19)-ENH-TR-25. The second author is partially supported by grant 101.04-2019.313 of the Vietnam National Foundation for Science and Technology Development.",True,False,False acknowledgement,10.48550/arxiv.2012.08185,doi10.48550/arxiv.2012.08185,"This research was supported in part by the Austrian Science Fund (FWF) under grant Z211-N23 (Wittgenstein Award), ERC CoG 863818 (FoRM-SMArt), and the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385.",True,False,False acknowledgement,10.21203/rs.3.rs-3761389/v1,doi10.21203/rs.3.rs-3761389/v1,The authors are grateful to the project entitled 'Scientific infrastructures for global change monitoring and adaptation in Andalusia (INDALO-LIFEWATCH-2019-04-AMA-01)'. Funding for open access charge: Universidad de Huelva / CBUA. This research is funded by EU project 101071300 Sustainable Horizons (HORIZON).,True,False,False acknowledgement,10.48550/arxiv.1910.04204,doi10.48550/arxiv.1910.04204,The authors were partially supported by the NSF grant DMS-1517583. We thank the anonymous referees for many helpful comments which greatly improve the quality of the paper.,True,False,False acknowledgement,10.48550/arxiv.1506.04330,doi10.48550/arxiv.1506.04330,*Supported by the FP7 EU project UNIFY and the German-Israeli GIF project I-1245-407.6/2014.,True,False,False acknowledgement,10.21203/rs.3.rs-643976/v1,doi10.21203/rs.3.rs-643976/v1,"This work was supported by the Institute of Biomedical Engineering, National Taiwan University, Taipei, Taiwan, ROC, Ministry of Science and Technology, Taipei, Taiwan, ROC and National Health Research Institutes (109-1901-01-19-07), Taiwan, Republic of China. | The authors would like to express their immense gratitude to the Institute of Biomedical Engineering, National Taiwan University, Ministry of Science and Technology and the National Health Research Institutes for their financial support.",True,False,False acknowledgement,10.21203/rs.3.rs-3912945/v1,doi10.21203/rs.3.rs-3912945/v1,"We acknowledge financial support from National Key Research and Development Program of China (2017YFD0600901, 2020YFD1000500) and the National Natural Science Foundation of China (32071838).",True,False,False acknowledgement,10.48550/arxiv.2004.09666,doi10.48550/arxiv.2004.09666,"The authors would like to thank Alexander Bruce for scanning internal cohorts of patient histology slides at BWH; Jingwen Wang, Katerina Bronstein, Lia Cirelli and Sharifa Sahai for querying the BWH slide database and retrieving archival slides; Martina Bragg and Terri Mellen for logistical support; and Zahra Noor for developing the interactive demo website. This work was supported in part by internal funds from BWH Pathology, Google Cloud Research Grant and Nvidia GPU Grant Program. R.J.C. was additionally supported by the NSF Graduate Fellowship and NIH T32HG002295.",True,True,False acknowledgement,10.48550/arxiv.1608.03002,doi10.48550/arxiv.1608.03002,"Aknowledgements Collaboration MTM2013-44233-P and Victor Grant-316446, Reiner the with and FEDER. for original of J. H. Przytycki and many version of useful Mathematics of M. was We Silvero would discussions. Subsection the partially like was partially to thank 2.2. particular, In The authors University supported of Michał Seville (IMUS) Reiner are us the Institute supported by Simons by Adamaszek helped grateful to and the Institute of Mathematics of the University of Barcelona (IMUB) for their hospitality.",True,False,False acknowledgement,10.48550/arxiv.1711.04305,doi10.48550/arxiv.1711.04305,"This article has been awarded by the National Natural Science Foundation of China (61170035, 61272420, 81674099, 61502233), the Fundamental Research Fund for the Central Universities (30916011328, 30918015103), and Nanjing Science and Technology Development Plan Project (201805036).",True,False,False acknowledgement,10.22541/au.166597931.18244176/v1,doi10.22541/au.166597931.18244176/v1,"This work was supported by the ""Science and Technology Commission of Shanghai Municipality (19050501900)"" to CL.",True,False,False acknowledgement,10.48550/arxiv.1805.04414,doi10.48550/arxiv.1805.04414,"The work of Christos Ordoudis and Pierre Pinson is partly funded by the Danish Strategic Research Council (DSF) through projects 5s-Future Electricity Markets, No. 12-132636/DSF and CITIES, No. 1305-00027B/DSF. The work of Juan M. Morales is partly funded by the European Research Council (ERC) under the European Unions Horizon 2020 research and innovation programme (grant agreement No. 755705), by the Spanish Research Agency through project ENE2017-83775-P (AEI/FEDER, UE), and by the Research Funding Program for Young Talented Researchers of the University of Málaga through project PPIT-UMA-B1-2017/18. Finally, we would like to thank the editor and the reviewers for their comments to improve this manuscript.",True,False,False acknowledgement,10.21203/rs.3.rs-2260142/v1,doi10.21203/rs.3.rs-2260142/v1,This work was supported by National Natural Science Foundation of China (31560476).,True,False,False acknowledgement,10.1101/2021.05.27.21257956,doi10.1101/2021.05.27.21257956,"Funding: This study is supported by China National Science Foundation (Grant No. 81871893), Key Project of Guangzhou Scientific Research Project (Grant No. 201804020030), Key-Area Research and Development Program of Guangdong Province, China (No. 2018B010111001), National Key R&D Program of China (2018YFC2000702) and the Scientific and Technical Innovation 2030-""New Generation Artificial Intelligence"" Project (No. 2020AAA0104100).",True,False,False acknowledgement,10.1101/2022.12.13.519604,doi10.1101/2022.12.13.519604,"Funding for this project was supported by an ERC Starting Grant [ERC-StG-759432] to I.C., an ERSC-IIAA grant to J.W., I.C. and S.F.S., by a Swiss National Science Foundation grant (10001C_201145) to A.-R.R. and R.C., and by a NSERC and IVADO graduate scholarships to S.F.S.",True,False,False acknowledgement,10.48550/arxiv.1910.12197,doi10.48550/arxiv.1910.12197,"This work was supported by AFOSR under grant FA95501710218, NSF under grant IIS1814472, and a Faculty award from J. P. Morgan. The authors would like to sincerely thank Bishan Yang for the initial discussions and ideas related to model architecture, and to Kathryn Mazaitis for the brainstorming sessions on the limitations of the model and future directions.",True,False,False acknowledgement,10.31224/osf.io/863un,doi10.31224/osf.io/863un,"The authors acknowledge financial support from the ERA-NET Susfood-CEREAL project, No. 031A431B, by the German Federal Ministry of Education and Research. This project has also received funding from the European Research Council (ERC) under the European Unions Horizon 2020 research and innovation program (grant agreement no. 694946).",True,False,False acknowledgement,10.21203/rs.3.rs-846033/v1,doi10.21203/rs.3.rs-846033/v1,"This work was supported by grants from the Natural Science Foundation of Liaoning Province (2020-ZLLH-45), Shenyang High-level Innovative Talents Program (RC190447) and Liaoning Cancer Hospital & Institute- Dalian University of Technology ""Medical-industrial interdisciplinary research fund"" (LD202021).",True,False,False acknowledgement,10.21203/rs.3.rs-498874/v2,doi10.21203/rs.3.rs-498874/v2,"This work was supported by the National Natural Science Foundation of China (32070250), the Natural Science Foundation of Guangdong Province (2020A1515011030) and the open research project of ""Cross-Cooperative Team"" of the Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences.",True,False,False acknowledgement,10.48550/arxiv.2211.09418,doi10.48550/arxiv.2211.09418,"A.K. was partially supported by the HSE University Basic Research Program. E.S. is supported by the EPSRC grant EP/T019379/1 ""Derived categories and algebraic K-theory of singularities"", and by the ERC Synergy grant ""Modern Aspects of Geometry: Categories, Cycles and Cohomology of Hyperkähler Varieties"".",True,False,False acknowledgement,10.1101/2020.11.15.383273,doi10.1101/2020.11.15.383273,J.R. is supported by the Vitterbi Fellowship. M.J.P.C. is supported by NHGRI U24HG007497.,True,False,False acknowledgement,10.48550/arxiv.1902.09938,doi10.48550/arxiv.1902.09938,The research of the second author was supported by NSERC of Canada under grant # RGPIN 418201. The authors would like to thank the anonymous reviewers for valuable comments and feedback that helped with the exposition and clarity of results.,True,False,False acknowledgement,10.21203/rs.3.rs-2825802/v1,doi10.21203/rs.3.rs-2825802/v1,"The authors appreciate the reviewers for their contribution in ensuring the quality of the article. We thank the financial support from Natural Science Foundation of China (Grant No. 52102235), Youth Foundation of Natural Science Foundation of Hebei Province (No. C2020202009) and Natural Science Foundation of Hebei Province (E2022202095).",True,False,False acknowledgement,10.1101/2024.06.22.24309300,doi10.1101/2024.06.22.24309300,"This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no 945380, DAAD PRIME Fellowship, Agencia Estatal de Investigación grant PID2019-108531GB-I00 AEI/FEDER, and AGAUR Generalitat de Catalunya grant 2021 SGR 00911.",True,False,False acknowledgement,10.48550/arxiv.2010.01837,doi10.48550/arxiv.2010.01837,Financial support from the European Research Council (2014-2019 / ERC grant agreement No. 337665) is gratefully acknowledged.,True,False,False acknowledgement,10.1101/222299,doi10.1101/222299,"This research was supported in part by grants NHGRI U01HG007031, ARO W911NF1710005, ONR N00014- 16-1-2664, DOE DE-AC02-05CH11231, NHGRI R00 HG006698, DOE (SBIR/STTR) Award DE-SC0017069, DOE DE-AC02-05CH11231, and NSF DMS-1613002. We thank the Center for Science of Information (CSoI), a US NSF Science and Technology Center, under grant agreement CCF-0939370. Research reported in this publication was supported by the National Library Of Medicine of the NIH under Award Number T32LM012417. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH. BY acknowledges support from the Miller Institute for her Miller Professorship in 2016-2017. SB acknowledges the support of UC Berkeley and LBNL, where he conducted most of his work on this paper as a postdoc. We thank P. Bickel and S. Shrotriya for helpful discussions and comments, T. Arbel for preparing Drosophila dataset, and S. Celniker for help vetting the Drosophila data and for consultation on TF interactions.",True,True,False acknowledgement,10.21203/rs.3.rs-4594320/v1,doi10.21203/rs.3.rs-4594320/v1,This work was supported by Science and Technology Commission of Shanghai Municipality (grant no. 22Y31900502) of Yan Huang.,True,False,False acknowledgement,10.21203/rs.3.rs-1405408/v1,doi10.21203/rs.3.rs-1405408/v1,"We thank Drs. Peter Narins, Hyle Park and Xiaohui Lin. This work was supported by NIH/NIDCD R01DC011506, R21DC019998, and VA Merit Award C2296-R to W.D.",True,False,False acknowledgement,10.48550/arxiv.1706.00063,doi10.48550/arxiv.1706.00063,"Enide Andrade was supported in part by the Portuguese Foundation for Science and Technology (FCT-Fundaçāo para a Ciência e a Tecnologia), through CIDMA - Center for Research and Development in Mathematics and Applications, within project UID/MAT/04106/2013. M. Robbiano was partially supported by project VRIDT UCN 170403003.",True,False,False acknowledgement,10.1101/832170,doi10.1101/832170,"This paper resulted from the sTURN working group funded by sDiv, the Synthesis Centre of the German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, funded by the German Research Foundation (FZT 118). Additional funding came from Österreichische Forschungsgemeinschaft (ÖFG; International Communication, project 06/15539). We thank all members of the working group for discussions that inspired this manuscript and feedback in its development. We also thank Jacob Usinowicz, Mary O'Connor, and Devin Lyons for valuable discussions and feedback. PLT is supported by Killam and NSERC postdoctoral fellowships. LDM acknowledges KU Leuven Research Fund project C16/2017/002 and FWO project G0B9818. ZH acknowledges support by the Interreg V-A Austria-Hungary program of the European Regional Development Fund (project ""Vogelwarte - Madárvárta 2"") and GINOP 2.3.2.-15-2016-00057. | LMG. is supported by NSERC CGS-D and UBC Four Year Fellowships. JMC was also supported by the German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, funded by the German Research Foundation (FZT 118). DSV was supported by the Alexander von Humboldt Foundation and sDiv, the Synthesis Centre of iDiv.",True,False,False acknowledgement,10.48550/arxiv.2309.01427,doi10.48550/arxiv.2309.01427,"The research was supported by the Deutsche Forschungsgemeinschaft (DFG), grant number 344069666. Open access funding enabled and organized by project DEAL. Thanks to M. Böhme, S. Unbehau and F. Ellermann for their helpful input.",True,False,False acknowledgement,10.48550/arxiv.1705.01727,doi10.48550/arxiv.1705.01727,This work is supported by the Swedish Research Council grant (Reg.No. 340-2013-5342) and Estonian institutional research funding IUT34-5. Adam Johansson is acknowledged for providing us with data.,True,False,False acknowledgement,10.1101/2023.07.29.551098,doi10.1101/2023.07.29.551098,"We thank Dr. Frédéric Labbé for assistance in utilizing the malaria-SNP simulator to generate simulated SNP read counts data. Q. He and N. Ju acknowledges support from Purdue University's Showalter Trust Research Award. Also, this project was funded, in part, with support from the Indiana Clinical and Translational Sciences Institute funded, in part by Grant Number UL1TR002529 from the National Institutes of Health, National Center for Advancing Translational Sciences, Clinical and Translational Sciences Award. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.",True,False,False acknowledgement,10.48550/arxiv.2012.13229,doi10.48550/arxiv.2012.13229,"This research was supported by the DFG through the CRC 1283 ""Taming uncertainty and profiting from randomness and low regularity in analysis, stochastics and their applications"".",True,False,False acknowledgement,10.48550/arxiv.1504.06760,doi10.48550/arxiv.1504.06760,This work was supported by the Korean MSIP under IITP Grant B0132-15-1005 (ETRI) and by the National Science Foundation under Grant CCF-1320895.,True,False,False acknowledgement,10.1101/2020.10.12.329177,doi10.1101/2020.10.12.329177,"This work was supported partly from DBT project- BT/PR21430/ADV/90/246/2016 (SP025) on developing Leptospira vaccines and partly from DBT-NIAB flagship project No-BT/AAQ/01/NIAB-Flagship/2019 (SP051) on host-pathogen interaction which are funded to SMF from the Department of Biotechnology, Ministry of Science and Technology, Government of India. Financial support from the NIAB core fund is duly acknowledged. The authors would like to thank the Director, NIAB, Dr. Subeer S. Majumdar for providing necessary infrastructural facility and support for the execution of the above study. We would like to thank Mr. Mohd Kadivella, PhD student of Dr. Faisal for help in docking experiments. Thanks to Mr. Shashikant Gawai and Mrs. Rama Devi for helping in confocal microscopy and Flow cytometry. Thanks to Dr. Jayant Hole for help in animal experiments. AK is supported by UGC fellowship and registered for PhD programme at RCB, Faridabad. VPV is supported by CSIR fellowship.",True,False,False acknowledgement,10.48550/arxiv.1901.03690,doi10.48550/arxiv.1901.03690,"BR was supported in part by the US National Science Foundation grant 1710009 and the grant 2717.001 from the Semiconductor Research Corporation. MS received funding from the European Commission H2020 within the Human Brain Project, grant agreement ID 785907. AS acknowledges support from the European Research Council through the European Unions Horizon 2020 Research and Innovation Program under grant number 682675.",True,False,False acknowledgement,10.48550/arxiv.1602.04369,doi10.48550/arxiv.1602.04369,"AB acknowledges funding under EPSRC grant EP/L020955/1. FM and HAM acknowledge funding from NSF (Grant No. DMR-1308235) and DOE Geosciences Division (Grant No. DE-FG02-03ER15458). We are grateful to the following scientists whom, over the years, have shaped our vision of the granular problem: J. S. Andrade Jr., L. Bo, T. Boutreux, J. Brujić, S. F. Edwards, P.-G. de Gennes, N. Gland, S. Havlin, J. T. Jenkins, Y. Jin, D. L. Johnson, J. Kurchan, S. Li, G. Parisi, R. Mari, L. La Ragione, M. Shattuck, C. Song, H. E. Stanley, M. S. Tomassone, J. J. Valenza, K. Wang, and P. Wang. We are grateful for comments on the review by: R. Blumenfeld, J.-P. Bouchaud, B. Chakraborty, P. Charbonneau, S. Franz, G. Gradenigo, S. Martiniani, M. Moore, C. O'Hern, G. Parisi, M. Saadatfar, M. Shattuck, M. Sperl, M. Wyart, A. Zaccone, and F. Zamponi. We also thank B. Behringer, S. Martiniani and S. Nagel for the permission to use their images.",True,False,False acknowledgement,10.1101/2021.01.20.427507,doi10.1101/2021.01.20.427507,"Funding: This work was supported by Grants-in-Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology of Japan (19K067309 to Y.K.), and the Takeda Science Foundation (to Y.K.). M.E.B. was supported by Research fund #3096.",True,False,False acknowledgement,10.1101/2021.06.28.450090,doi10.1101/2021.06.28.450090,"The authors acknowledge Mr. Alan Hoofring (NIH’s Medical Arts Design Section) for help with Illustrations (Figures 1 and 6). In addition, the authors thank Ms. Sherly Michel (NIDCD) and Mr. Pat Diers (NIDCD) for help with animal care and genotyping and Dr. Kuni Iwasa (NIDCD) and Dr. Benjamin Perrin (Indiana University - Purdue University Indianapolis) for carefully reading the manuscript and providing critical inputs. A.X.C.R. and this work was supported by the National Institutes of Health (NIH) Distinguished Scholars Program and the NIH Intramural Research Program of the National Institute of Biomedical Imaging and Bioengineering (grant # ZIA EB000094). This research was supported (in part) by the Intramural Research Program of the NIH, NIDCD DC000039 to T.B.F. S.K. was supported by JSPS KAKENHI grant 20K09687 and G.F. by NIDCD/NIH (R01DC014658 and S10OD025130). The electron microscopy was performed at the University of Kentucky Electron Microscopy Center, which belongs to the National Science Foundation NNCI Kentucky Multiscale Manufacturing and Nano Integration Node, supported by ECCS-1542174.",True,False,True acknowledgement,10.48550/arxiv.2009.09801,doi10.48550/arxiv.2009.09801,This work was partially supported by ANR project CQFD (ANR-18-CE23-0003).,True,False,False acknowledgement,10.21203/rs.2.10901/v1,doi10.21203/rs.2.10901/v1,"We are grateful to all colleagues for participating in the research and express our gratitude to the 20-20 project of Samsung Medical Center and the National Research Foundation of Korea (NRF-2017R1A2B4005136). | This study was supported by a grant from the Basic Science Research Program through the National Research Foundation of Korea (NRF), which is funded by the Ministry of Education, Science, and Technology (NRF-2017R1A2B4005136). The experiments of this study including immunohistochemistry and cytokine measurements were funded by the aforementioned grant. However, there was no role of the funding body in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.",True,True,False acknowledgement,10.48550/arxiv.1812.03313,doi10.48550/arxiv.1812.03313,E.L.D. was partially supported by the Academy of Finland (grant 288501 'Geometry of subRiemannian groups') and by the European Research Council (ERC Starting Grant 713998 GeoMeG 'Geometry of Metric Groups').,True,False,False acknowledgement,10.1101/2021.09.29.462469,doi10.1101/2021.09.29.462469,E.M. is supported by the National Science Foundation Graduate Research Fellowship under Grant No. DGE-1656518 and a Stanford Graduate Fellowship. J.S. is supported by the National Institute of General Medical Sciences Grants R01 GM116847 and R35 GM139517 and NSF Faculty Early Career Development Program Award MCB1552196.,True,True,False acknowledgement,10.48550/arxiv.2401.00153,doi10.48550/arxiv.2401.00153,"This work was supported by the National Natural Science Foundation of China (Grant 62371139 and 82227803), the Science and Technology Commission of Shanghai Municipality (Grant 22DZ1100100 and 22ZR1404800).",True,False,False acknowledgement,10.48550/arxiv.2008.12024,doi10.48550/arxiv.2008.12024,Funding: Parts of this work have been performed in the context of project SAARTE (Spatially-Aware Augmented Reality in Teaching and Education). SAARTE is supported by the European Union (EU) in the ERDF program P1-SZ2-7 and by the German federal state Rhineland-Palatinate (Antr.-Nr. 84002945). This work was also supported by the Bundesministerium für Bildung und Forschung (BMBF) in the context of ODPfalz under Grant 03IHS075B,True,False,False acknowledgement,10.48550/arxiv.2102.10034,doi10.48550/arxiv.2102.10034,This research was partially supported by the Federal Ministry for Economic Affairs and Energy (BMWi) under the project KI-SIGS and the German Research Foundation (DFG) under the project Transregio Crossmodal Learning (TRR 169).,True,False,False acknowledgement,10.21203/rs.3.rs-1300133/v1,doi10.21203/rs.3.rs-1300133/v1,"This research was supported in part as a COVID-19 Research Project by Research Organization of Information and Systems (ROIS). K.I. and M.O. have been supported by JSPS KAKENHI Grant Numbers JP21H04905 and JP21J22938, respectively.",True,False,False acknowledgement,10.26434/chemrxiv-2021-81d73,doi10.26434/chemrxiv-2021-81d73,"The authors would like to thank Matti Jussila and Kari Hartonen for useful discussion and assistance in assembling the sorbent tube, and Markus Metsälä for assistance with the mass spectrometer measurements. The authors would like to thank Roland Teissier, Alexei Baranov and Hadrien Phillip for providing the QCL used in this work. This work received funding from Jenny and Antti Wihuri foundation. This work was supported by the Academy of Finland Flagship Programme, Photonics Research and Innovation (PREIN), decision number: 320167.",True,False,False acknowledgement,10.48550/arxiv.2411.13434,doi10.48550/arxiv.2411.13434,The simulations were performed on resources provided by the National Academic Infrastructure for Supercomputing in Sweden (NAISS) at the National Supercomputer Centre partially funded by the Swedish Research Council through grant agreement no. 2022-06725 and on the centers of the Grand Equipement National de Calcul Intensif (GENCI) under grant number A0090406960. The first author also acknowledges financial support from a visiting fellowship of the Centre de Recherche Astrophysique de Lyon. A.B. acknowledges support from the Ministerio de Econom ́ıa y Competitividad of Spain (Grant No. PID2021-125550OBI00).,True,False,False acknowledgement,10.48550/arxiv.1209.0483,doi10.48550/arxiv.1209.0483,Aleksanyan thanks Göran Gustafsson Foundation for visiting appointment to KTH. Shahgholian was partially supported by Swedish Research Council.,True,False,False acknowledgement,10.21203/rs.3.rs-35150/v1,doi10.21203/rs.3.rs-35150/v1,The current research was funded by Medical Science and Technology Foundation of Guangdong Province (A2016450 and B2018237).,True,False,False acknowledgement,10.21203/rs.3.rs-3218320/v1,doi10.21203/rs.3.rs-3218320/v1,"Funding This work was supported by the Shanghai Sailing Program (No. 20YF1446100), Shanghai Municipal Health Commission (No. shslczdzk04901; ZY(2021-2023)-0204-06), Shanghai University of TCM Xinglin Young Talent Training System-Xinglin Scholars Project (TCM[2020]23), Shanghai University of TCM Excellent Talents Training Program (TCM[2020]10), and Future Plan for Traditional Chinese Medicine development of Science and Technology of Shanghai Municipal Hospital of Traditional Chinese Medicine (No. WL-QNRC-2022002K; WL-HBMS-2022003K).",True,False,False acknowledgement,10.48550/arxiv.2108.08998,doi10.48550/arxiv.2108.08998,"Acknowledgements This work was supported by Institute of Information & communications Technology Planning & Evaluation (IITP) grant funded by the Korea government(MSIT) (No.2019-0-01906, Artificial Intelligence Graduate School Program(POSTECH)) and National Research Foundation of Korea (NRF) grant funded by the Korea government(MSIT) (NRF- 2018R1A5A1060031, No. 2020R1C1C1014863).",True,False,False acknowledgement,10.48550/arxiv.2212.07641,doi10.48550/arxiv.2212.07641,"Acknowledgements This research is supported by National Key R&D Program of China (2021YFA1400800), VILLUM FONDEN (VIL50469), European Research Council (REFOCUS 3522), the National Natural Science Foundation of China (62035017, 12334017, 12293052, 12104522, 92050202, 61975243), the Natural Science Foundation of Guangdong (2022A1515011400), Guangdong Introducing Innovative and Entrepreneurial Teams of ""The Pearl River Talent Recruitment Program"" (2021ZT09X044), the Danish National Research Foundation, SPOC (DNRF123), and Guangdong Special Support Program (2019JC05X397). We thank Yujie Chen, Jie Liu and Siyuan Yu for loaning the equipment.",True,False,False acknowledgement,10.21203/rs.3.rs-3218619/v1,doi10.21203/rs.3.rs-3218619/v1,"Funding: This work was supported by the National Science Foundation (DGE-1247312 to BAG and IOS- 1354072 to KMW), Sigma Xi (G2018031596022314 to BAG), and Boston University.",True,False,False acknowledgement,10.48550/arxiv.1709.02781,doi10.48550/arxiv.1709.02781,†This material is based upon work supported by the National Science Foundation under Grant No. PHY 1519606.,True,False,False acknowledgement,10.21203/rs.3.rs-1472257/v1,doi10.21203/rs.3.rs-1472257/v1,"This work was financially supported by the Natural Science Foundation of Jiangsu Province (BZ2021010), the National Natural Science Foundation of China (21890741, 22073087), MOST (2018YFA0208603), CAS (YSBR-004), and Super Computer Centre of USTCSCC and SCCAS.",True,False,False acknowledgement,10.48550/arxiv.1609.09167,doi10.48550/arxiv.1609.09167,- The research of G. Ge was supported by the National Natural Science Foundation of China under Grant Nos. 11431003 and 61571310.,True,True,False acknowledgement,10.1101/409730,doi10.1101/409730,"This work has been supported by grants from the National Institutes of Health, USA (grant R01-GM078221) and the National Science Foundation, USA (award 1507736). Computations in this study have been performed in part on the Maryland Advanced Research Computing Center (MARCC) Blue Crab cluster. The authors thank Prof. Ingemar André, Lund University for helpful discussions and guidance and Dr. David E. Kim, University of Washington for advice on homology modeling with Robetta.",True,False,False acknowledgement,10.31219/osf.io/7gqmt,doi10.31219/osf.io/7gqmt,"Cai, Yunbo and Minjing thanks financial supports from the Natural Science Foundation of Zhejiang and Taizhou (LTY20B030001) and private fund from Chris Rourk.",True,False,False acknowledgement,10.1101/2023.09.19.558498,doi10.1101/2023.09.19.558498,The Edinburgh Genome Foundry is supported by the BBSRC (BB/M018040/1) and the BBSRC/MRC/EPSRC-funded UK Centre for Mammalian Synthetic Biology as part of the RCUK's Synthetic Biology for Growth program. This work was supported by the UKRI EPSRC Fellowship (EP/V033794/1) to G.S.,True,False,False acknowledgement,10.48550/arxiv.2312.13698,doi10.48550/arxiv.2312.13698,The study has received financial support from the National Science Centre of Poland under grant 2018/28/C/ST3/00052.,True,False,False acknowledgement,10.1101/2022.08.09.22278584,doi10.1101/2022.08.09.22278584,This research was partly funded by the National Institute for Health Research (NIHR) (INSPIRED 16/136/102) using aid from the UK government to support global health research. GoDARTS was funded and supported by the Wellcome Trust (Award 072960 and 084726) and the UK Medical Research Council (Award G0601261). SHARE is NHS Scotland Research (NRS) infrastructure initiative and it was funded by the Chief Scientists Office of the Scottish Government. The PREDICTION-ADR Consortium was funded by the European Union's Seventh Framework Programme (FP7/2007-2013) under Grant Agreement no. 602108. The UK Biobank was primarily funded by the Wellcome Trust and the Medical Research Council. Approval for the study and permission to access the data was granted by the UK Biobank Resource under Application Number 20405 that is open access.,True,True,False acknowledgement,10.48550/arxiv.1302.4487,doi10.48550/arxiv.1302.4487,"Department of Mathematics, University of Houston, Houston, TX 77204-3008 and Dept. Mechanics and Mathematics, Moscow State University, Moscow 119899 email: molshan@math.uh.edu; partially supported by the RFBR grants 12-01-00283, 11-01-00767, 12-01-91330. | Department of Mathematics, University of Pittsburgh, Pittsburgh 15260, PA, USA; email: xix21@pitt.edu; partially supported by the NSF under grant DMS-0810385",True,False,False acknowledgement,10.21203/rs.3.rs-785656/v1,doi10.21203/rs.3.rs-785656/v1,"This study was supported by the National Key Research and Development Program of China (No. 2018YFC1314300), the National Natural Science Foundation of China (81971255), Social Development Foundation of Jiangsu Province, China (No. BE2019610), Jiangsu Provincial Medical Talent project (ZDRCA2016075) and Basic Research Project of Frontier Technology in Jiangsu Province, China (BK20192004D).",True,False,False acknowledgement,10.1101/2020.12.03.410761,doi10.1101/2020.12.03.410761,The initial part of the work was supported by a CRCNS grant from the NSF (1515587). We would like to thank Manuel Tanzi for his thoughts and inputs during this project. We would also like to thank Gang Xiao and Ekaterina Gribkova for their valuable evaluation and feedback about the application.,True,False,False acknowledgement,10.48550/arxiv.1911.07625,doi10.48550/arxiv.1911.07625,This publication was made possible by NPRP grant # NPRP9-224-1-049 from the Qatar National Research Fund (a member of Qatar Foundation). The statements made herein are solely the responsibility of the authors.,True,False,False acknowledgement,10.31223/osf.io/te8as,doi10.31223/osf.io/te8as,"This study was funded by the Dutch research organisation (NWO) with the project number ALWOP.2015.082. We would like to thank the editor John Brodholt and three anonymous reviewers for constructive comments. The microstructural studies were conducted at EMU, the Utrecht University Facility for Electron Microscopy. The head of facility Dr M. A. van Huis, facility manager C.W.T.M. Schneijdenberg, and J. D. Meeldijk are thanked for support. Funding",True,False,False acknowledgement,10.48550/arxiv.2301.03756,doi10.48550/arxiv.2301.03756,The authors were partially supported by JSPS KAKENHI Grant Numbers 20K03634 and 21K03298.,True,False,False acknowledgement,10.2139/ssrn.4364493,doi10.2139/ssrn.4364493,"Acknowledgements. This research is partially supported by NSFC grants 12201255. The author is grateful to Bo Dai, Huijun Fan and Yuuji Tanaka for invaluable help in the production of this paper.",True,False,False acknowledgement,10.21203/rs.3.rs-3484966/v1,doi10.21203/rs.3.rs-3484966/v1,"Funding support by: Indian Council of Medical Research [Advanced Center for Research in Pediatric Kidney Diseases; 5/7/1090/2013-RHN and 5/4/7-18/Nephro/2020-NCDII] and Department of Biotechnology, Government of India [BT/PR11030/MED/30/1644/2016]",True,False,False acknowledgement,10.21203/rs.3.rs-67706/v1,doi10.21203/rs.3.rs-67706/v1,"This work was supported by the National Natural Science Foundation of China (Grant No. 81972690, 81000914, and 81272526). The funding bodies played no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.",True,True,False acknowledgement,10.1101/2020.12.29.424752,doi10.1101/2020.12.29.424752,"We are grateful to those who helped us collect samples from various locations. We thank Ms. Yuki Sano, Mr. Atushi Shirakawa, and Mr. Kazuma Kubo for preparing the DNA samples. This work was supported by the Urakami Foundation for Food and Food Culture Promotion.",True,False,False acknowledgement,10.48550/arxiv.2109.11503,doi10.48550/arxiv.2109.11503,We thank the reviewers for their helpful comments. We thank Xiang Zhou for useful discussions and thank Steven Chen for proofreading SCUs for PyrXSum. This work was supported by NSFCAREER Award 1846185.,True,False,False acknowledgement,10.26434/chemrxiv-2023-4dbq2,doi10.26434/chemrxiv-2023-4dbq2,"This research was funded by European Commission through the HORIZON-EIC-2021- TRANSITIONOPEN-01 project NEXUS (automated in-line separatioN and dEtection of eXtracellular vesicles for liqUid biopsy applicationS) under Grant Number 101058200. The authors are grateful to Dr. R. Vago (Urological Research Institute, Division of Experimental Oncology, IRCCS San Raffaele Scientific Institute, Milan, Italy) for providing HEK-derived EV samples, and to Dr. Y. D'Alessandra (Bio-Techne) for performing Western Blot analyses.",True,False,False acknowledgement,10.21203/rs.3.rs-1684185/v1,doi10.21203/rs.3.rs-1684185/v1,"This research is supported by the National Natural Science Foundation of China (51975259, 31601578) and China Agriculture Research System of MOF and MARA.",True,False,False acknowledgement,10.48550/arxiv.2404.04965,doi10.48550/arxiv.2404.04965,"A.R., T.M., and J.R. receive funding from the Australian Government Research Training Program Scholarship from the University of Melbourne. K.K., S.E.J. and D.B.G. are supported by the ARC (Australian Research Council) Industrial Transformation Training Centre in Cognitive Computing for Medical Technologies (IC170100030). T.M. is supported by the Elizabeth and Vernon Puzey Scholarship. C.S.L is supported by the Melbourne School of Psychological Sciences.",True,False,False acknowledgement,10.46855/energy-proceedings-9972,doi10.46855/energy-proceedings-9972,The authors would like to acknowledge the financial support from the National Natural Science Foundation of China [51706139] and the Science and Technology Commission of Shanghai Municipality [20dz1203304].,True,False,False acknowledgement,10.48550/arxiv.2209.09748,doi10.48550/arxiv.2209.09748,Acknowledgements We thank the referee for useful comments and suggestions. The first named author thanks the Infosys Foundation for the partial financial support. He also thanks MATRICS for the partial financial support. The second named author thanks the Chennai Mathematical Institute for the hospitality during his stay.,True,False,False acknowledgement,10.48550/arxiv.2102.09248,doi10.48550/arxiv.2102.09248,"The work on this article was supported by the Freigeist-Fellowships of Volkswagen Stiftung, project ""Bayesian Boosting - A new approach to data science, unifying two statistical philosophies"". Boyao Zhang performed the present work in partial fulfilment of the requirements for obtaining the degree ""Dr. rer. biol. hum."" at the Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU).",True,True,False acknowledgement,10.21203/rs.3.rs-691242/v1,doi10.21203/rs.3.rs-691242/v1,This study was fully funded by Moorfields Eye Charity grant (R170041A) to Mr. Sajjad Ahmad (Nov 2016-Oct 2021).,True,False,False acknowledgement,10.48550/arxiv.2306.04882,doi10.48550/arxiv.2306.04882,"CL thanks Lucas Menou for helping to set up the numerical calculations at the beginning of the project. We thank Yicheng Qiang for helpful discussions and critical reading of the manuscript. We gratefully acknowledge funding from the Max Planck Society and the European Union (ERC, EmulSim, 101044662).",True,False,False acknowledgement,10.21203/rs.3.rs-3963516/v1,doi10.21203/rs.3.rs-3963516/v1,This work was supported by MHLW Research on Emerging and Re-Emerging Infectious Diseases and Immunization (Program Grant Number JPMH23HA2011).,True,False,False acknowledgement,10.1101/2020.02.03.20020131,doi10.1101/2020.02.03.20020131,"This work was supported by the National Health and Medical Research Council project grant number APP1020526, the Brain Foundation, Wicking Trust, Collie Trust, and Sidney and Fiona Myer Family Foundation.",True,False,False acknowledgement,10.48550/arxiv.2106.07549,doi10.48550/arxiv.2106.07549,This work was supported by National Research Foundation of Korea (2018R1D1A1A02045842). | This work was supported by National Research Foundation of Korea (2018R1D1A1A02045842). All authors certify that they have no affiliations with or involvement in any organization or entity with any financial interest or non-financial interest in the subject matter or materials discussed in this manuscript.,True,False,False acknowledgement,10.21203/rs.3.rs-5363849/v1,doi10.21203/rs.3.rs-5363849/v1,This work was supported by the Tokyo Metropolitan Government Infectious Disease Research Project and the Japan Society for the Promotion of Science (JSPS) (KAKENHI Grant No. 24K22352). We thank all the laboratory members and staff at Tokyo Metropolitan University.,True,False,False acknowledgement,10.1101/2020.10.01.322982,doi10.1101/2020.10.01.322982,"This work is supported by the National Institute of Health under grants R01-GM114365, R01-EB026998, and R01-CA204443.",True,False,False acknowledgement,10.21203/rs.3.rs-68810/v1,doi10.21203/rs.3.rs-68810/v1,We express our appreciation for funding supported by a Human Resources and Services Administration (HRSA) Healthy Tomorrows Partnership for Children Program grant (Grant Number H17MC29435) and the Life Course Methodology Core (LCMC) of the New York Regional Center for Diabetes Translation Research via a grant from the National Institute of Diabetes and Digestive and Kidney Diseases (grant numbers DK111022- 8786 and P30 DK111022).,True,False,False acknowledgement,10.22541/essoar.171893198.89278240/v1,doi10.22541/essoar.171893198.89278240/v1,"The GISTEMP analysis is funded by the NASA Modeling, Analysis and Prediction program. N.L. was also funded from the National Science Foundation Graduate Research Fellowship (NSF DGE 16-44869) and the Food and Agriculture Organization (FAO) of the United Nations.",True,False,False acknowledgement,10.1101/704247,doi10.1101/704247,"A.R. acknowledges NIH/NCI PSOC award number U54 CA193417, NSF CAREER 1350601, P30 CA016520, SPORE P50 CA174523, NIH U01 CA227550, NIH 4DN U01 HL129998, NIH Center for Photogenomics (RM1 HG007743), and the Tara Miller Foundation. C.M. acknowledges support from the Deutsche Forschungsgemeinschaft DFG through the SFB 1243. A.S. acknowledges support from the NIH grant 5R01GM124446-02. L.S. would like to acknowledge the support of the PROMOS fellowship of the DAAD, Germany. Y.G. would like to acknowledge the Schmidt Science Fellows in partnership with the Rhodes Trust. Y.G. is a fellow of The Jane Coffin Childs Memorial Fund for Medical Research and this investigation has been aided by a grant from The Jane Coffin Childs Memorial Fund for Medical Research.",True,False,False acknowledgement,10.1101/2022.01.06.475217,doi10.1101/2022.01.06.475217,This work was supported by the Young Scientists Fund of the National Natural Science Foundation of China [31801103] and the Chinese Academy of Medical Sciences (CAMS) Initiative for Innovative Medicine [2016-I2M-1-016].,True,False,False acknowledgement,10.22541/au.166733107.78559129/v1,doi10.22541/au.166733107.78559129/v1,"G.W., L.S., E.S.G., and J.M. acknowledge funding by the DFG through the CRC1279 ""Exploiting the Human Peptidome for Novel Antimicrobial and Anticancer Agents"", project ID 316249678. J.M. acknowledges additional funding by the DFG through projects MU3115/8-1 and MU3115/11-1 and the Baden Württemberg Stiftung (Piggy-backed EPI-X4). M.H. was funded by funding programs for female scientists of the Equal Opportunities Unit and by the ""Bausteinprogramm"", Projektnummer: L.SBN.0209, of Ulm University. E.S.G further acknowledges instrumentation funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the Großgerät initiative- Projektnummer: 436586093. E.S.G. and Y. A.H. are supported by the DFG under Germany's Excellence Strategy - EXC-2033 - Project number 390677874.",True,False,False acknowledgement,10.31223/osf.io/9nrwh,doi10.31223/osf.io/9nrwh,"Funding. RH is supported by the German space agency (Deutsches Zentrum für Luft- und Raumfahrt) under PLATO Data Center grant 50OO1501. JPD and JR acknowledge support from the DFG SPP 1833 ""Building a Habitable Earth"" (DU 1450/3-1, DU 1450/3-2, and RE 665/42-2).",True,True,False acknowledgement,10.21203/rs.3.rs-32861/v1,doi10.21203/rs.3.rs-32861/v1,"- This study was funded by the grants from the National Key Research and Development Program (grant number 2019YFC1316000), the National Natural Science Foundation of China (grant numbers 31970696, 81502975 and 81802355), and the Zhejiang Provincial Program for the Cultivation of High-level Innovative Health Talents. The funders played no roles in the study design, the collection, analysis, and interpretation of data, the writing of the report, and the decision to submit the article for publication. All authors, external and internal, had full access to all of the data (including statistical reports and tables) in the study and can take responsibility for the integrity of the data and the accuracy of the data analysis, as well as being independent of the funders.",True,True,False acknowledgement,10.2139/ssrn.4663839,doi10.2139/ssrn.4663839,Acknowledgements: The author was supported by the Engineering and Physical Sciences Research Council (EPSCR) Project 2478902.,True,False,False acknowledgement,10.22541/au.165912304.43671789/v1,doi10.22541/au.165912304.43671789/v1,"This work was supported by the projects PI15/01073 and PI18/00997 from the Health Research Fund (FIS. Instituto de Salud Carlos III. Plan Nacional de I+D+I 2013-2016) of the Carlos III Health Institute (ISCIII, Madrid, Spain) partially financed by the European Regional Development Fund (FEDER) 'A way of making Europe'. BRS (CPII19/00002) is recipient of a Miguel Servet contract supported by the FIS. DRT has been funded by the IiSGM through its intramural programme.",True,False,False acknowledgement,10.48550/arxiv.2210.03665,doi10.48550/arxiv.2210.03665,"This work was supported in part by Fermilab LDRD 2019.011 and LDRD 2022.053. This material is based upon work supported by the U.S. Department of Energy, Office of Science, Office of Workforce Development for Teachers and Scientists, Office of Science Graduate Student Research (SCGSR) program. The SCGSR program is administered by the Oak Ridge Institute for Science and Education for the DOE under contract number DESC0014664. The work of M.B., B.C., and P.M. is supported by NOIRLab, which is managed by the Association of Universities for Research in Astronomy (AURA) under a cooperative agreement with the National Science Foundation. SIFS construction was supported by FAPESP 1999/03744-1 and Laboratório Nacional de Astrofísica (LNA/MCTI). CCD development was supported by the Lawrence Berkeley National Laboratory Director, Office of Science, of the U.S. Department of Energy under Contract No. DE-AC02-05C H11231. This manuscript has been authored by Fermi Research Alliance, LLC under Contract No. DE-AC02-07CH11359 with the U.S. Department of Energy, Office of Science, Office of High Energy Physics. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes.",True,False,False acknowledgement,10.48550/arxiv.2206.11179,doi10.48550/arxiv.2206.11179,This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No. 817597).,True,False,False acknowledgement,10.1101/2024.02.27.582331,doi10.1101/2024.02.27.582331,This research was supported by grant DK031135 from the National Institute of Diabetes and Digestive and Kidney Diseases. The authors thank Steven Zukerman for his expert technical assistance.,True,False,False acknowledgement,10.21203/rs.3.rs-580080/v1,doi10.21203/rs.3.rs-580080/v1,"This study was supported from the Key Research Program of Frontier Sciences, Chinese Academy of Sciences (ZDBS-LY-DQC017, QYZDB-SSW-DQC035), the Natural Science Foundation of Heilongjiang Province (D2018009), the Grass-field Rotation Scientist Studio of Heilongjiang Province (202004),",True,False,False acknowledgement,10.21203/rs.2.17151/v1,doi10.21203/rs.2.17151/v1,"This study is funded by grants from the Open Society Foundations (https://www.opensocietyfoundations.org/), The ELMA Relief Foundation (https://www.elmaphilanthropies.org/relief), and the Fred Foundation (https://www.fredfoundation.org/).",True,False,False acknowledgement,10.1101/2024.01.30.577965,doi10.1101/2024.01.30.577965,The authors gratefully acknowledge funding support from the Biotechnology and Biological Research Council (BBSRC; BB/P504440/1 to RCC) and from Chiesi Farmaceutici S.p.A. awarded to RCC under a collaborative framework agreement. Support was also received from UKRI/MRC (MR/N013867/1) to RCC); The Rosetrees Trust (M904 to RCC) and from the National Institute for Health and Care Research University College London Hospitals Biomedical Research Centre.,True,False,False acknowledgement,10.48550/arxiv.2312.04701,doi10.48550/arxiv.2312.04701,Acknowledgments: The author is grateful to Chiara Marletto and Charles Bédard for extensive discussions and comments on issues related to this work. V.V.'s research is supported by the Moore Foundation and the Templeton Foundation.,True,False,False acknowledgement,10.1101/2022.06.26.497561,doi10.1101/2022.06.26.497561,"D.G. and JR acknowledge support from the Swiss Cancer Research Foundation (KFS-4104-02-2017). G.Croce is supported by the Marie-Curie fellowship (H2020-MSCA-IF-2020, No 101027973). | Funding Acquisition, D.G.",True,False,False acknowledgement,10.48550/arxiv.1505.00318,doi10.48550/arxiv.1505.00318,Acknowledgment. This work was supported by JSPS KAKENHI Grant Number 25400014.,True,False,False acknowledgement,10.21203/rs.3.rs-3035547/v1,doi10.21203/rs.3.rs-3035547/v1,"Acknowledgements: We thank Graham Watton and Gary Oak access to private land where the experiments were conducted. The research was supported by grants from the Natural Sciences and Engineering Research Council of Canada (KL-H: Postdoctoral Fellowship, TNS: Discovery Grant).",True,False,False acknowledgement,10.21203/rs.3.rs-34715/v2,doi10.21203/rs.3.rs-34715/v2,"This work was funded by Strategic Awards from the Wellcome Trust [WT086151/Z/08/Z, WT104104/Z/14/Z] and the Member States of the European Molecular Biology Laboratory (EMBL); Funding for open access charge: Wellcome Trust.",True,False,False acknowledgement,10.21203/rs.3.rs-16599/v1,doi10.21203/rs.3.rs-16599/v1,"AL was supported by funding from GlaxoSmithKline and PW by funding from the National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs).",True,False,False acknowledgement,10.21203/rs.2.19783/v2,doi10.21203/rs.2.19783/v2,"This work has, in part, received funding from UK Research and Innovation via the Global Challenges Research Fund under grant agreement 'A Global Network for Neglected Tropical Diseases' grant number MR/P027989/1, Sir J. C. Bose Fellowship, India and Council of Scientific and Industrial Research, India.",True,False,False acknowledgement,10.21203/rs.3.rs-2003043/v3,doi10.21203/rs.3.rs-2003043/v3,This study was funded by the LSHTM Wellcome's Institutional Strategic Support Fund (ISSF) grant reference 204928/Z/16/Z.,True,False,False acknowledgement,10.1101/2022.05.30.493937,doi10.1101/2022.05.30.493937,This work was partly supported by NIH grant R01GM139980.,True,False,False acknowledgement,10.26434/chemrxiv-2023-bn0jv-v2,doi10.26434/chemrxiv-2023-bn0jv-v2,"This work was supported by the Office of Naval Research (N00014-18-1-2659 and N00014-17- 12875). C.B.H. acknowledges support from the NSF Graduate Research Fellowship Program Grant No. DGE-1656518. He also acknowledges the invaluable support of Stephane Thiell maintaining the XStream Cluster, and Tiffany Berglund and Ethan Curtis for their keen edits of the text. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect the views of the National Science Foundation.",True,False,False acknowledgement,10.21203/rs.3.rs-1705218/v1,doi10.21203/rs.3.rs-1705218/v1,Acknowledgements This research was funded by the Research Grant Council of the Hong Kong SAR (PolyU 152023/20E). Xin Fang is supported by the National Natural Science Foundation of China (Projects No. 12002371) and the Hong Kong Scholars Program.,True,False,False acknowledgement,10.21203/rs.2.22898/v3,doi10.21203/rs.2.22898/v3,"This research was financially supported by the National Key Research and Development Program of China (2016YFD0101802), the National Natural Science Foundation of China (31600216), the Natural Science Foundation of Hebei Province, China (C2017301066), and the HAAFS Agriculture Science and Technology Innovation Project (2019-4-8-1). The funding bodies played no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.",True,True,False acknowledgement,10.31235/osf.io/j4wdh,doi10.31235/osf.io/j4wdh,"The author(s) disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: The research in this paper was supported by funding from the Australian Research Council [grant number DP200100189] and by the ARC Centre of Excellence for Automated Decision-Making and Society [grant number CE200100005].",True,False,False acknowledgement,10.48550/arxiv.1210.8074,doi10.48550/arxiv.1210.8074,This research was in part supported by a grant from IPM (No. 90030052).,True,False,False acknowledgement,10.21203/rs.3.rs-1797921/v1,doi10.21203/rs.3.rs-1797921/v1,"This research work was financially supported by Guangdong Basic and Applied Basic Research Foundation (No. 2021A1515110565), Medical Scientific Research Fundation of Guangdong Province of China (No. B2021051) and Scientific Research Project of Traditional Chinese Medicine Bureau of Guangdong Province of China (No. 20212119).",True,False,False acknowledgement,10.21203/rs.3.rs-1094738/v1,doi10.21203/rs.3.rs-1094738/v1,The authors gratefully acknowledge the support provided by National Natural Science Foundation of China (CN)(Grant nos. 21007060) and the Ji Yang college of Zhejiang Agriculture and Forestry University Science developmental foundation (Grant nos.4251700015) and Natural Science Foundation of Zhejiang Province (CN)(Grant nos. LY14B070014).,True,False,False acknowledgement,10.21203/rs.3.rs-145781/v1,doi10.21203/rs.3.rs-145781/v1,"This study is funded by Ikomed Technologies Inc., Vancouver, BC | This work was supported by Mitacs through Mitacs Accelerate Program.",True,False,False acknowledgement,10.26434/chemrxiv-2024-xv7db,doi10.26434/chemrxiv-2024-xv7db,"Funding: This research was funded by Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP, grant number 2007/54241-8), and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq, grant 310648/2022-0).",True,False,False acknowledgement,10.31234/osf.io/b95ev,doi10.31234/osf.io/b95ev,U.H. was supported by the Israel Science Foundation (1532/20). O.N. was supported by the Azriely Foundation.,True,False,False acknowledgement,10.1101/2024.04.24.590974,doi10.1101/2024.04.24.590974,"Funding resources: This work was funded by NIH Grants DP2GM137419 (V.S.T.) and R01CA282036 (J.T.M.), Welch Foundation Grants I-1911 (V.S.T.), I-2088 (J.W.) I-1961 (J.T.M), CPRIT Grant RP220309 (J.T.M.), and the Howard Hughes Medical Institute (HHMI, V.S.T and J.T.M.). V.A.L is supported by the HHMI Hanna Gray fellowship. V.S.T. is a Michael L. Rosenberg Scholar in Medical Research, a CPRIT Scholar (RR150033), and a Searle Scholar. V.S.T. and J.T.M. are investigators of the HHMI. | Acknowledgements: We thank members of the Tagliabracci laboratory for helpful discussions, Andrew Lemoff (UTSW Proteomics Core Facility) for help with intact mass spectrometry, the Structural Biology Lab at UT Southwestern Medical Center for support with X-ray crystallographic studies, Helen Aronovich for help with screening crystals (UTSW Structural Biology Laboratory). Jun Wu is a New York Stem Cell Foundation – Robertson Investigator and Virginia Murchison Linthicum Scholar in Medical Research. Research in the Wu laboratory is supported by National Institutes of Health (R01HD103627), NYSCF, and The Welch Foundation (I-2088). We thank Robin E. Stanley from the NIH for the E. coli expression vector for the TSEN complex. Structural results shown in this report are derived from work performed at Argonne National Laboratory (ANL), Structural Biology Center (SBC) at the Advanced Photon Source (APS), under Department of Energy Office of Biological and Environmental Research contract DE-AC02-06CH11357.",True,True,False acknowledgement,10.26434/chemrxiv-2024-hm6vh,doi10.26434/chemrxiv-2024-hm6vh,"We thank Alex M. Ganose for insightful discussions regarding the electronic band structures of these compounds. W.Z.D, K.B.S, and D.O.S acknowledge support from the European Research Council (grant 758345). S.R.K. acknowledges the EPSRC Centre for Doctoral Training in the Advanced Characterisation of Materials (EP/S023259/1) for a PhD studentship. W.Z.D and M.Z acknowledge the support of the National Key R&D Program of China (2022YFF0708800), the Natural Science Foundation of Zhejiang Province (LZ22A040004), and the National Natural Science Foundation of China (11674042). W.Z.D acknowledges the support of the international joint doctoral education fund of Beihang University. W.Z.D, K.B.S, S.R.K and D.O.S acknowledge the support of the UCL Myriad and Kathleen High-Performance Computing Facilities (Myriad@UCL, Kathleen@UCL). K.B.S, S.R.K and D.O.S acknowledge the support of the ARCHER2 UK National Supercomputing Service (https://www.archer2.ac.uk) via our membership of the UK's HEC Materials Chemistry Consortium, which is funded by the EPSRC (EP/L000202, EP/R029431 and EP/T022213), the UK Materials and Molecular Modelling (MMM) Hub (Young EP/T022213). W.Z.D and M.Z acknowledge the support of the High-Performance Supercomputing Center of Zhongfa Aviation Institute of Beihang University and the Center for High-Performance Computing of Beihang University (BHHPC). K.B.S and D.O.S acknowledge the University of Birmingham's BlueBEAR HPC service (http://www.birmingham.ac.uk/bear); the Baskerville Tier 2 HPC service (https://www.baskerville.ac.uk/), which was funded by the EPSRC and UKRI through the World Class Labs scheme (EP/T022221/1) and the Digital Research Infrastructure programme (EP/W032244/1) and is operated by Advanced Research Computing at the University of Birmingham; and the Sulis Tier 2 HPC platform hosted by the Scientific Computing Research Technology Platform at the University of Warwick, which is funded by EPSRC Grant EP/T022108/1 and the HPC Midlands+ consortium.",True,True,False acknowledgement,10.48550/arxiv.2103.02164,doi10.48550/arxiv.2103.02164,This material is based upon work that is in part supported by the Defense Advanced Research Projects Agency (DARPA) under Contract No. HR001117C0047.,True,False,False acknowledgement,10.26434/chemrxiv-2022-46vsh,doi10.26434/chemrxiv-2022-46vsh,"We gratefully acknowledge financial support from Instituto de Salud Carlos III/FEDER ""A way to make Europe/""Investing in your future"" (project 20/01754), and MCIN/AEI/10.13039/501100011033 (projects PID2020-114347RB-C31 and PID2020- 114347RB-C32), and Gobierno Vasco-Eusko Jaurlaritza (project IT1639-22). A.B.-M. and L.C. thank MICIN for a FPI (BES-2015-073571) and a FPU (FPU2017-01317) predoctoral contract, respectively. R.P.M thanks MIU and NGEU for a postdoctoral contract (MARSA21/71). A.O.S. thanks UPV-EHU for a predoctoral fellowship. The authors thank the technical and human support provided by SGIker (UPV/EHU/ ERDF, EU), X-rays: Molecules and Materials Unit, for the XRD structure of compound 9.",True,False,False acknowledgement,10.48550/arxiv.1011.4652,doi10.48550/arxiv.1011.4652,"*The final preparation of this paper was supported by the DFG within the research training group ""Methods for Discrete Structures"" (GRK1408). It contains one of the results of the authors diploma thesis written at TU Dortmund, Germany.",True,False,False acknowledgement,10.26434/chemrxiv-2023-rf3dk-v3,doi10.26434/chemrxiv-2023-rf3dk-v3,"The authors acknowledge computing support from Dr. Zhe Shen, Dr. Jin Zhang, Ms. Guo Wang, Mr. Chunan Wu, Mr. Yongpan Chen, and Ms. Yunfei Zhou. BX, XW, JZ, DF, PZ, JM, SW and MY are partially supported by grants from Shenzhen Science and Technology Program (KQTD20210811090114013) and Trillion Compound Library Construction Enabling New Drug Discovery (XMHT20220104035). We would like to acknowledge Nicholas Labello for the computing infrastructure support.",True,False,False acknowledgement,10.21203/rs.3.rs-2964857/v1,doi10.21203/rs.3.rs-2964857/v1,"Funding: Innovationsausschuss of the Federal Joint Committee (G-BA) (01NVF18024). | The systematic review is part of a larger project which is supported by the Innovation Fund coordinated by the Innovation Committee of the Federal Joint Committee in Germany (Innovationsausschuss beim Gemeinsamen Bundesausschuss (G-BA)), grant number 01NVF18024. Open Access funding enabled and organized by Projekt DEAL. The funders had no role in planning or conduct of the review nor in the decision to submit the results for publication.",True,False,False acknowledgement,10.48550/arxiv.math/0605217,doi10.48550/arxiv.math/0605217,Research supported in part by NSF grant no. DMS-0654147.,True,False,False acknowledgement,10.48550/arxiv.1610.01797,doi10.48550/arxiv.1610.01797,"This research is supported by EPSRC grant EP/N014111/1 ""Making Sense of Sounds"" and research scholarship from the China Scholarship Council (CSC).",True,False,False acknowledgement,10.1101/2023.09.06.556542,doi10.1101/2023.09.06.556542,"This study was supported by Biomedical Research Programme funds at Weill Cornell Medicine in Qatar, a program funded by the Qatar Foundation. The funders had no role in the study design, data collection and analysis, decision to publish or preparation of the manuscript. | JK and RB are supported by the National Institute of Aging of the National Institutes of Health under awards U19AG063744, R01AG069901-01 and Alzheimer's association award AARFD-22-974775. | ROS/MAP data collection was supported through funding by NIA grants P30AG10161 (ROS), R01AG15819 (ROSMAP; genomics and RNAseq), R01AG17917 (MAP), R01AG30146, R01AG36042 (5hC methylation, ATACseq), RC2AG036547 (H3K9Ac), R01AG36836 (RNAseq), R01AG48015 (monocyte RNAseq) RF1AG57473 (single nucleus RNAseq), U01AG32984 (genomic and whole exome sequencing), U01AG46152 (ROSMAP AMP-AD, targeted proteomics), U01AG46161(TMT proteomics), U01AG61356 (whole genome sequencing, targeted proteomics, ROSMAP AMP-AD), the Illinois Department of Public Health (ROSMAP), and the Translational Genomics Research Institute (genomic). | ROSMAP metabolomics data is funded wholly or in part by the following grants and supplements thereto: NIA R01AG046171, RF1AG051550, RF1AG057452, R01AG059093, RF1AG058942, U01AG061359, U19AG063744 and FNIH: #DAOU16AMPA awarded to Dr. Kaddurah-Daouk at Duke University in partnership with many academic institutions.",True,True,False acknowledgement,10.26434/chemrxiv.13116005.v1,doi10.26434/chemrxiv.13116005.v1,"Acknowledgments This research was financially supported by C1 Gas Refinery Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT and Future Planning (NRF-2017M3D3A1A01037001). This study was also supported by a core Korea Research Institute of Chemical Technology (KRICT) project (SI2051-10).",True,False,False acknowledgement,10.1101/2023.06.06.23290973,doi10.1101/2023.06.06.23290973,"This project has been funded in whole or in part with federal funds from the National Cancer Institute, National Institutes of Health, under Contract No. 75N91019D00024 Task Order No. 75N91022F00007 and for EMMES LLC under Division of Microbiology and Infectious Diseases contract # 75N93021C00012. The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organizations imply endorsement by the U.S. Government. − ARB has received research support from NIH-NIAID, grants from Pfizer, Cyanvac, and Merck as well as consulting fees from Janssen and GSK. − LRB has received grants from Wellcome Trust, Gates Foundation, NIH/Harvard Medical School through institution. Serves as member of DSMB for NIH and AMDAC for FDA. Dr Baden is involved in HIV and SARS-CoV-2 vaccine clinical trials conducted in collaboration with the NIH, HIV Vaccine Trials Network (HVTN), Covid Vaccine Prevention Network (CoVPN), International AIDS Vaccine Initiative (IAVI), Crucell/Janssen, Moderna, Military HIV Research Program (MHRP), the Gates Foundation, and Harvard Medical School. − DJD has received a contract from Leidos Biomedical research to conduct the clinical trial through institution. − ARF has received grants from Janssen, Pfizer, Merck, BioFire Diagnostics, and CyanVac through institution, consultant fees from Arrowhead and Icosavax, and honoraria as a speaker from Moderna and GlaxoSmithKline. ARF also serves on safety/advisory boards for Novavax and received travel/meeting support from GlaxoSmithKline. − SEF has received funding from Leidos to Saint Louis University to conduct Protocol DMID22-0004. − DNF has as a contract from CDC and is the site PI for clinical trials from Gilead, Regeneron and MetroBiotech LLC. She is the PI on one investigator-initiated award from Gilead and the co-PI on another investigator-initiated award from Gilead. DNF served on an HBV Advisory board for Gilead in 2021 and received payment for expert testimony not related to COVID in 2022. − PAG has received funding for COVAIL clinical trial. PAG has also received consulting fees from Janssen Vaccines. − LCI has received support for the present manuscript from NIH-NIAID/DMID, Moderna, Pfizer, and Sanofi. LCI has also received grants from GSK, Merck, Sharpe & Dohme Corp, CDC, Novavax, AHRQ, and NIH/NLM/NIMHD as well as consulting fees from Moderna, CDC, and Pediatric Emergency Medicine Associates, LLC. LCI has received honoraria as a speaker from American Academy of Pediatrics, Rockefeller University, and American Academy of Pediatrics- Georgia Chapter. LCI Serves on Data Safety Monitoring for NIH-Phase 2 Vaccine Trial for Monkeypox, Moderna Scientific Advisory Board- North America, and CoVID-19 Task Force, Georgia. LCI has a leadership role in the Pediatric Infectious Disease Society and serves as board member on the Emory University- Pediatric and Reproductive Environmental Health Scholars-Southeastern, the Center for Spatial Analytics of the Georgia Institute of Technology, and the American Academy of Pediatrics (Executive Board for Section on Infectious Diseases). LCI has received travel/meeting support from the American Academy of Pediatrics and Moderna. − LAJ has received funding from NIH for support for this study, funding from Pfizer to support a clinical trial and contract funding for research support from the CDC and the NIH, all through institution. LAJ also reports unpaid participation on Data Safety Monitoring Boards for NIH funded clinical trials. − SJL has received NIH grants through institution. − AFL has received grants from Merck, Gilead and, Viiv through institution as well as consulting fees from Vir Biotechnology. AFL has also received travel support from Merck to attend a required investigator meeting, testing kits and supplies to support research study from Hologic, and medication donated by Mayne Pharma to support research study. − MM has received funding from Division of Microbiology and Infectious Diseases for contract # 75N93021C00012. − DCM has received funding from NIH/75N93019C00050-21A: CIVICS A- Option 21A- DMID Trials of COVID-19 Vaccines. − JM has received funding from Division of Microbiology and Infectious Diseases, contract # 75N93021C00012. − AN has received support from NIH-NIAID, CEIRR (Centers of Excellence for Influenza Research and Response) and Gates Cambridge Trust as well as grants from NIH-NIAID R01. − RMN has received grants from Moderna and Janssen and travel/meeting support from Moderna. − CMP has received funding from NIAID UM1AI148684. − RMP has received funding from NIH DMID COVAIL as well as grants from Janssen, Moderna and NIH through institution. − NGR has received research grants from Pfizer, Merck, Sanofi, Quidel and Lilly through institution, consulting fees from Krog, honoraria as speaker for Virology education, and travel support from Sanofi. NGR serves on safety committees for ICON and EMMES and is a member of the Moderna Advisory board. − DJS has received support from NIH-NIAID CEIRR , grants from NIH-NIAID R01, and travel support from NIH-NIAID CEIRR for NIH-related meetings. − KT has received funding from Division of Microbiology and Infectious Diseases contract # 75N93021C00012. − EBW has received funding from Leidos Biomedical Research AGREEMENT NO. 22CTA-DM0009 as well as grants from Pfizer, Moderna, Sequiris, Clinetic, and Najit Technologies, with payments made to institution. EBW has also received honoraria as a speaker from College of Diplomates of the American Board of Pediatric Dentistry, consulting fees from Iliad Biotechnologies, and travel/meeting support from the American Academy of Pediatrics. EBW serves as member of Vaxcyte Scientific Advisory board. − PLW has received subcontract funding from NIH for this study as well as NIH grant funding and contract funding from Pfizer through University of Iowa. PLW has also received consulting fees from Pfizer and serves on safety/advisory board for Emmes Corporation. − SK has received research grants from Pfizer.",True,True,False acknowledgement,10.21203/rs.3.rs-1178312/v2,doi10.21203/rs.3.rs-1178312/v2,"The research project is part of the UNISSAHEL program (Universal Health Coverage in Sahel), funded by the Agence Française de développement (AFD) Group.",True,False,True acknowledgement,10.48550/arxiv.2106.08584,doi10.48550/arxiv.2106.08584,Funding Yongle Zhang was supported partly by the National Natural Science Foundation of China (11901414) and (11871359) and Sichuan Science and Technology Program (2018JY0201). Guoyin Li was partially supported by a Future fellowship from Australian Research Council (FT130100038) and a discovery project from Australian Research Council (DP190100555). Ting Kei Pong was supported partly by Hong Kong Research Grants Council PolyU153000/20p.,True,False,False acknowledgement,10.31219/osf.io/wun5v,doi10.31219/osf.io/wun5v,"DQ is supported by an Excellence Grant from the Novo Nordisk Foundation (NNF16OC0019856). The funder had no influence in the design, analysis, or interpretation of data or in the writing of the manuscript.",True,True,False acknowledgement,10.48550/arxiv.1208.3348,doi10.48550/arxiv.1208.3348,Acknowledgments. The third author is supported by Nucleus Millennium Information and Randomness P04-069-F. This project was also partially supported by the international cooperation program ECOS-Conicyt C03-E03.,True,False,False acknowledgement,10.1101/339424,doi10.1101/339424,"This research was supported by the BBSRC (including BB/L011794/1, PRR-CROP BB/G024960/1, the Norwich Research Park Doctoral Training Grant BB/M011216/1, and the cross-institute strategic programmes Designing Future Wheat and Plant Health BB/P012574/1), the 2Blades Foundation, the Betty and Gordon Moore Foundation, and the Gatsby Foundation.",True,False,False acknowledgement,10.1101/841601,doi10.1101/841601,"We thank Dr. Christopher C. Hemond (UMMS) for critical reading of the manuscript. We thank Dr. Paola Perrat (UMMS) for advice on the design and production of plasmids, Shannon Becker (UMMS) and Anoushka Lotun (UMMS) for assistance with tissue preparation, and Dr. Claudio Punzo and Georgia Gunner for advice and training on optomotor testing. We further thank Prof. Dr. Matthew Rasband (Baylor College of Medicine) for sharing CASPR and βIV-spectrin specific antibodies and Prof. Oleg Butkovsky for providing P2RY12 specific antibodies. This work was supported by DFG (Deutsche Forschungsgemeinschaft) grant WE 6170/1-1 (SW), NIMH - R00MH102351 (DPS), NIMH - RO1MH113743 (DPS), NIMH - R21MH115353 (DPS), Charles H. Hood Foundation (DPS), Brain & Behavior Research Foundation (DPS), Worcester Foundation (DPS), the Intramural Research Program of NINDS (DSR), and the Dr. Miriam and Sheldon G. Adelson Medical Research Foundation (DPS, DSR, BP).",True,False,False acknowledgement,10.26434/chemrxiv-2021-xb970,doi10.26434/chemrxiv-2021-xb970,"National Science and Engineering Research Council of Canada National Science Foundation Canadian Foundation for Innovation Wilson and Florence Quail Fund in Chemistry | This work was funded by the National Science and Engineering Research Council of Canada (NSERC) Award RGPIN-2019-04868, the National Science Foundation (Award 1454959), the Canadian Foundation for Innovation John R. Evans Leaders Fund, and a Wilson and Florence Quail Fund in Chemistry. TFK is a Canada Research Chair in Environmental Analytical Chemistry. This research was undertaken, in part, thanks to funding from the Canada Research Chairs program. The authors thank Mr. K. Blaha for contributions to the kinetics studies, and Dr. D. J. Donaldson for helpful discussion.",True,False,False acknowledgement,10.1101/2023.02.24.529866,doi10.1101/2023.02.24.529866,This study was funded by the Academy of Finland the project No. 345091 (to JM) and Societas pro Fauna et Flora Fennica (grant to CO).,True,False,False acknowledgement,10.1101/2020.01.10.902221,doi10.1101/2020.01.10.902221,This work was supported by NIH grants R01 NS109176 to S.S.; and R21 NS101450 to S.S. and A.L.T.. We also benefited from the use of the National Eye Institute Core Facilities [supported by P30 EY012576].,True,False,False acknowledgement,10.1101/2023.12.19.572424,doi10.1101/2023.12.19.572424,This work was supported by the National Institute of Allergy and Infectious Diseases of the National Institutes of Health under award number R21AI167124 to DAG. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.,True,False,False acknowledgement,10.21203/rs.3.rs-1050623/v1,doi10.21203/rs.3.rs-1050623/v1,"This study was supported in part by Korea University Guro Hospital (Korea Research-Driven Hospital), and a grant funded by Korea University Medicine (K2115701, K.M.C.) and by the National Research Foundation of Korea (NRF- 2018R1D1A1B07049605, H.S.C.).",True,False,False acknowledgement,10.48550/arxiv.1808.09654,doi10.48550/arxiv.1808.09654,NJ was supported by Australian Laureate Fellowship grant no. FL120100094 from the Australian Research Council. CJL was supported by Macquarie University New Staff grant no. 63934274.,True,False,False acknowledgement,10.48550/arxiv.0806.4058,doi10.48550/arxiv.0806.4058,The studies that resulted in writing this paper have been supported by Contract φ1515 with the Bulgarian Svience Research Fund.,True,False,False acknowledgement,10.21203/rs.3.rs-58642/v2,doi10.21203/rs.3.rs-58642/v2,"Funding: This study was supported by the National Natural Science Foundation of China (No. 52070113 and No.51378286), and the State Environmental Protection Key Laboratory of Microorganism Application and Risk Control.",True,False,False acknowledgement,10.1101/543546,doi10.1101/543546,Acknowledgements This research was supported by the Research Grants Council of Hong Kong through Project 11206514. JCV acknowledges support provided by the Hong Kong PhD Fellowship Scheme (HKPFS). We thank David Wilkins for critiquing the manuscript.,True,False,False acknowledgement,10.22541/au.165812631.19042374/v1,doi10.22541/au.165812631.19042374/v1,"The research was supported by the National Natural Science Foundation of China #12171160, 11831003 and Guangdong Basic and Applied Basic Research Foundation #2020B1515310015.",True,True,False acknowledgement,10.26434/chemrxiv.12925511.v2,doi10.26434/chemrxiv.12925511.v2,"A large portion of this work was funded by the National Science Foundation under Grant No. CHE-1708210. C.G.J. acknowledges the National Science Foundation Graduate Research Fellowship Program (DGE-1650604), the Christopher S. Foote Fellowship, and the Pat Tillman Foundation for funding. J.O. acknowledges the National Science Foundation Graduate Research Fellowship Program (DGE-1650604) for funding. H.M.N. acknowledges the Packard Foundation and Bristol Myers Squibb for generous funding. A.E.S thanks Robert H. Grubbs for use of facilities and helpful discussions. The authors thank Jose Rodriguez, Duilio Cascio, Michael R. Sawaya and Michael J. Collazo (UCLA) for assistance with MicroED data collection and processing, and Vincent LaVallo, Yan Xu and William Wolf for helpful general discussions. The computational work was performed at the UC Berkeley Molecular Graphics and Computation Facility (MGCF), which is supported by the National Institute of Health (Grant No. NIH S10OD023532), and the authors thank Dave Small for his assistance with these calculations. This work incorporates data collected at the Northeastern Collaborative Access Team (NE-CAT) beamlines at Argonne National Laboratory. NE-CAT is funded by the NIH-NIGMS (Grant No. P30 GM124165). The Pilatus 6M detector on the 24-ID-C beamline is funded by NIH-ORIP HEI (Grant No. S10 RR029205). This work also used resources at the Advanced Photon Source, a U.S. Department of Energy Office of Science User Facility operated by Argonne National Laboratory under Contract No. DE-AC02-06CH11357. The UCLA-DOE Institute's X-ray Crystallography Core Facility is supported by the U.S. Department of Energy (Grant No. DE-FC02-02ER63421).",True,True,False acknowledgement,10.1101/2022.04.21.22273340,doi10.1101/2022.04.21.22273340,SAI is funded by a Wellcome Trust Clinical Research Training Fellowship (no 215654/Z/19/Z).,True,False,False acknowledgement,10.48550/arxiv.2301.05177,doi10.48550/arxiv.2301.05177,"THK, TL and AR are supported partly by the Area of Excellence (AoE) under the Grant No. AoE/P-404/18-3 and supported partly by the General Research Fund (GRF) under Grant No. 16304321. Both of the AoE and GRF grants are issued by the Research Grants Council of Hong Kong S.A.R. LL is supported by the DOE grant DE-SC-0010010.",True,False,False acknowledgement,10.48550/arxiv.2405.06554,doi10.48550/arxiv.2405.06554,"This work was supported by NSTC of Taiwan under Grant 111-2628-E-002-005-MY2 and 113-2628-E-002-022-MY4, and NTU under Grant 113L7764, 113L891404, and 113L900902. The material in this paper was presented in part at the 2024 IEEE International Symposium on Information Theory, July 2024.",True,False,False acknowledgement,10.1101/2021.08.19.21262289,doi10.1101/2021.08.19.21262289,"Funding: The pilot study referred to in this article is funded by a Catalyst Grant from CSO (Chief Scientist Office) Scotland. The funding body had no input into the design, analysis, interpretation or manuscript preparation.",True,False,False acknowledgement,10.48550/arxiv.1907.00017,doi10.48550/arxiv.1907.00017,"¹This work has been supported by Deutsche Forschungsgemeinschaft through Collaborative Research Center 910 ""Control of self-organizing nonlinear systems: Theoretical methods and concepts of application"".",True,False,False acknowledgement,10.1101/2023.12.19.572370,doi10.1101/2023.12.19.572370,"Funding This work was supported through the CGIAR Research Program on Roots, Tubers and Bananas (RTB) and the European Union Framework Program pipeline for the sustainable generation of h",True,False,False acknowledgement,10.48550/arxiv.2305.12040,doi10.48550/arxiv.2305.12040,This work was supported in part by NSF under grant CCF-1954837 and ONR under grant N00014-21-1-2719.,True,False,False acknowledgement,10.48550/arxiv.2210.03884,doi10.48550/arxiv.2210.03884,We thank the anonymous reviewers for their insightful comments and suggestions. This work was supported by the National Key RD Program of China via grant 2021YFF0901602 and the National Natural Science Foundation of China (NSFC) via grant 62176078.,True,False,False acknowledgement,10.21203/rs.3.rs-27955/v1,doi10.21203/rs.3.rs-27955/v1,"The study is funded by the MRC Confidence in Concept Scheme (Award Letter August 2015) and UCB Pharma Investigator Initiated Study scheme (Award letter December 2015). Please see attached. The MRC had no direct input into the design of the study and collection, analysis, and interpretation of data and in writing the manuscript. UCB Pharma had input into the logistics of supplying IMP. UCB Pharma have not been involved in analysis, data interpretation or in the writing of this manuscript.",True,True,False acknowledgement,10.48550/arxiv.2103.14825,doi10.48550/arxiv.2103.14825,This research was supported by the UAEU UPAR Grant G00002160.,True,False,False acknowledgement,10.48550/arxiv.2110.02211,doi10.48550/arxiv.2110.02211,*The author is funded by the Deutsche Forschungsgemeinschaft (DFG) - OB 512/1-1. | †The author is supported by the ERC Synergy Grant HyperK (Grant agreement No. 854361).,True,False,False acknowledgement,10.21203/rs.3.rs-34513/v1,doi10.21203/rs.3.rs-34513/v1,"The study was funded by the Academy of Finland project 307856 and 323576 to PA. ICD supported by the MBDP doctoral program. The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.",True,False,False acknowledgement,10.48550/arxiv.1205.5052,doi10.48550/arxiv.1205.5052,H. Shahgholian was partially supported by the Swedish Research Council. Authors also thank Professor Carlos Kenig for several valuable comments. A.K. thanks Göran Gustafsson Foundation for visiting appointments to KTH.,True,False,False acknowledgement,10.21203/rs.3.rs-1957271/v1,doi10.21203/rs.3.rs-1957271/v1,G.J.M and B.A.W are partially supported by NIH grant R01CA249981 and the Leukemia & Lymphoma Society. This study used the Multiple Myeloma Research Foundation (MMRF) CoMMpass Dataset. The authors acknowledge the efforts of the MMRF research consortium to provide the fundamental resource for our study.,True,True,False acknowledgement,10.1101/2022.08.16.504199,doi10.1101/2022.08.16.504199,"We would like to thank Prof. Tom Clemente and the University of Nebraska Plant Transformation Core Research Facility for transformations, Erik Nielsen for providing the Golgi localization reporter, Gregg Sobocinski for imaging advice and Zach Lippman for providing the fin4 seeds. This work was supported by the National Science Foundation under grant no. IOS-1755482.",True,False,False acknowledgement,10.1101/241174,doi10.1101/241174,"This study was financially supported in part by the National Key R&D Program of China (2017YFD0200103); National Natural Science Foundation of China (Grant No.31101596, 31372130); Hunan Provincial Recruitment Program of Foreign Experts; and the National Oilseed Rape Production Technology System of China; ""2011 Plan"" supported by The Chinese Ministry of Education; Research and Innovation Project of postgraduates in Hunan province (CX2015B242).",True,False,False acknowledgement,10.31234/osf.io/8wzmt,doi10.31234/osf.io/8wzmt,The publication was funded by the Open Access Fund of Universität Trier and the German Research Foundation (DFG) within the Open Access Publishing funding program.,True,False,False acknowledgement,10.48550/arxiv.1111.5501,doi10.48550/arxiv.1111.5501,"*Department of Mathematics, ETH, 8092 Zurich, Switzerland. Previous affiliation: Mathematics Institute and DIMAP, University of Warwick, Coventry CV4 7AL, UK. This research was done when the author was affiliated with the Institute of Mathematics, Free University Berlin, 14195 Berlin, Germany. Email: roman.l.glebov@gmail.com. The author was supported by DFG within the research training group ""Methods for Discrete Structures"". | †Alfréd Rényi Institute of Mathematics, Hungarian Academy of Sciences, Budapest, Hungary and Zhejiang Normal University, Jinhua, China, email: tardos@renyi.hu. Partially supported by an NSERC grant, the MTA Cryptography ""Lendület"" project, and the Hungarian OTKA grant NN-102029.",True,False,False acknowledgement,10.48550/arxiv.2109.05251,doi10.48550/arxiv.2109.05251,"The research of this author was supported by the China Scholarship Council while visiting the National University of Singapore. | The research of this author is supported in part by the National Natural Science Foundation of China under Grant 11871178 and Grant 61773136. | The research of this author is supported by the Ministry of Education, Singapore, under its Academic Research Fund Tier 3 grant call (MOE-2019-T3-1-010).",True,False,False acknowledgement,10.26434/chemrxiv-2023-r0qq2-v3,doi10.26434/chemrxiv-2023-r0qq2-v3,"This work was funded by the Office of Basic Energy Sciences, U.S. Department of Energy (Grant No. DESC0021950). This work was partially supported by the University of Chicago Materials Research Science and Engineering Center, which is funded by the National Science Foundation under award number DMR-2011854 and DMR-1420709. Work performed at the Center for Nanoscale Materials, a U.S. Department of Energy Office of Science User Facility, was supported by the U.S. DOE, Office of Basic Energy Sciences, under Contract No. DE-AC02-06CH11357. This work made use of the shared facilities at the University of Chicago Materials Research Science and Engineering Center, supported by National Science Foundation under award number DMR-2011854. This work was completed in part with resources provided by the University of Chicago's Research Computing Center. P.P.J. acknowledges support from a MRSEC-funded Kadanoff-Rice fellowship (DMR- 2011854 and DMR-1420709). D.G.U. and M.K.Y.C. acknowledge the support from the BES SUFD Early Career award. R.L. acknowledges support from a MRSECfunded graduate research fellowship (DMR-1420709). S.B.K. acknowledges start-up funding support from the University of Chicago and the Neubauer Family Assistant Professors Program. L.L. was supported by the Center for Nanophase Materials Sciences (CNMS), which is a U.S. Department of Energy, Office of Science User Facility at Oak Ridge National Laboratory.",True,False,False acknowledgement,10.48550/arxiv.2002.04510,doi10.48550/arxiv.2002.04510,This work is supported by the Office of Naval Research under grant N000141612651.,True,False,False acknowledgement,10.31222/osf.io/cgvzp,doi10.31222/osf.io/cgvzp,This material is based on work supported by the National Science Foundation under Grant No. BCS-2049837.,True,False,False acknowledgement,10.21203/rs.3.rs-3091794/v1,doi10.21203/rs.3.rs-3091794/v1,"We thank the Department of Biotechnology, Government of India, for a project grant (Grant No: BT/PR/31706/PBD/26/705/2019) funding a Hyperthermophile Enzyme Hydrolase Research Centre (HEHRC) in PG's lab. SW thanks the University Grants Commission for a doctoral research fellowship.",True,False,False acknowledgement,10.48550/arxiv.2306.08785,doi10.48550/arxiv.2306.08785,"This work was supported, in part, by the Science Foundation Ireland (SFI) Grants No. 16/SP/3804 (Enable) and 13/RC/2077_P2 (CONNECT Phase 2), the National Natural Science Foundation Of China (NSFC) under the SFI-NSFC Partnership Programme Grant Number 17/NSFC/5224.",True,False,False acknowledgement,10.48550/arxiv.1910.10787,doi10.48550/arxiv.1910.10787,"Acknowledgement. The author is a member of GNAMPA (Gruppo Nazionale per l'Analisi Matematica, la Probabilità e le loro Applicazioni) of INdAM (Istituto Nazionale di Alta Matematica 'Francesco Severi') and is supported by the grant PRIN n. 2017AYM8XW: Nonlinear Differential Problems via Variational, Topological and Set-valued Methods and the grant PdR 2018-2020 - linea di intervento 2: Metodi Variazionali ed Equazioni Differenziali of the University of Catania.",True,False,False acknowledgement,10.21203/rs.3.rs-2038969/v1,doi10.21203/rs.3.rs-2038969/v1,"Fundação para a Ciência e Tecnologia (FCT) is acknowledged for financial support through several projects PTDC/MED-QUI/30591/2017 and UIDB/DTP/04138/2020 (FFUL), and UIDB/04423/2020 and UIDP/04423/2020 (FFUP). FCT and National Network for Advanced Computing (RNCA) are acknowledged for financial support through projects CPCA/A0/7304/2020 and 2021.09821.CPCA. This work also received financial support by national funds, and was co-financed by the European Union (FEDER) over PT2020 Agreement (UIDB/QUI/50006/2020 and POCI/01/0145/FEDER/007265). Cátia A. Bonito and Fernando Durães acknowledge FCT for their PhD grants SFRH/BD/130750/2017 and SFRH/BD/114681/2019, respectively. Professor doctor Emília Sousa and Fernando Durães acknowledge to the Interdisciplinary Centre of Marine and Environmental Research (CIIMAR). The authors are also grateful to Simon Lefevre (LBMC, UNamur) for its technical support in gathering ATPase assays data.",True,False,False acknowledgement,10.21203/rs.3.rs-25679/v2,doi10.21203/rs.3.rs-25679/v2,"This work was supported by the foundation of Nanjing Forestry University (163108059). | This research was designed and wrote by Z.H. and A.A. In addition, H.W., H.R., and Q.Z. reviewed and confirmed. This study was supervised and funded by A.M.",True,False,False acknowledgement,10.1002/essoar.10506340.1,doi10.1002/essoar.10506340.1,"The design, building of and research into the HP^3 has been supported by the German Aerospace Center DLR, by NASA, the AW, and the Polish Academy of Science. The numerical code and data necessary to reproduce the results of this paper have been made publicly available in Grott (2021). Part of this work was performed at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with NASA. US government support is gratefully acknowledged. This paper is InSight Contribution Number 210.",True,True,False acknowledgement,10.48550/arxiv.1601.07376,doi10.48550/arxiv.1601.07376,"I would like to thank Tatiana Odzijewicz, for a careful and thoughtful reading of the manuscript. This work was supported by Portuguese funds through the CIDMA - Center for Research and Development in Mathematics and Applications, and the Portuguese Foundation for Science and Technology (FCT-Fundaç\~ao para a Ciência e a Tecnologia), within project UID/MAT/04106/2013.",True,False,False acknowledgement,10.2139/ssrn.4515389,doi10.2139/ssrn.4515389,This research is partially supported by the Hong Kong RGC/GRF grant number 16207120.,True,False,False acknowledgement,10.21203/rs.3.rs-2515434/v1,doi10.21203/rs.3.rs-2515434/v1,This study was supported by National Institute of Dental and Craniofacial Research grant R03DE027494. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.,True,False,False acknowledgement,10.48550/arxiv.1703.10465,doi10.48550/arxiv.1703.10465,The research partially supported by the Polish NCN grants 2016/21/B/ST1/00033 (Tomasz Szarek) and 2014/13/B/ST1/04551 (Anna Zdunik).,True,False,False acknowledgement,10.1101/299727,doi10.1101/299727,"Research in the laboratory of C.B. is supported by the Deutsche Forschungsgemeinschaft (DFG) DFG BE 4728 1-1 and 3-1, and the University of Mainz. P.M., S.A. and A.K. thank the International PhD Programme (IPP) of the Institute of Molecular Biology, Mainz for supporting the PhD. The work of F.M. is supported by the German Federal Ministry of Education and Research (BMBF 01EO1003).",True,False,False acknowledgement,10.48550/arxiv.2404.12770,doi10.48550/arxiv.2404.12770,†C. Song was with NAVER LABS as a research intern when conducting this work. This research was also supported by IITP grant No.2022-0-00480.,True,False,False acknowledgement,10.26434/chemrxiv-2021-39nhv-v3,doi10.26434/chemrxiv-2021-39nhv-v3,This work was funded by the German Research Foundation (DFG) via SFB 1333 project number 358283783 and the cluster of excellence EXC 2075 (SimTech) project number 390740016. Furthermore the authors acknowledge support by the state of Baden-Württemberg through bwHPC.,True,False,False acknowledgement,10.48550/arxiv.2406.06722,doi10.48550/arxiv.2406.06722,"Acknowledgement. This work is a part of the undergraduate thesis of S. Locke at McMaster University (2023-2024). The authors thank S. Dyachenko, P. Lushnikov, J. Weber, and X. Zhao for many discussions related to the content of this work. Figure 1 was prepared by S. Wang as a part of an undergraduate summer project (2024). D. E. Pelinovsky acknowledges the funding of this study provided by the grant No. FSWE-2023-0004 through the State task program in the sphere of scientific activity of the Ministry of Science and Higher Education of the Russian Federation and grant No. NSH-70.2022.1.5 for the State support of leading Scientific Schools of the Russian Federation.",True,False,False acknowledgement,10.1101/2023.08.03.551779,doi10.1101/2023.08.03.551779,"I thank Wolfgang Stein (Illinois State University), Fernando Vonhoff (UMBC), and Kim-Ann Saal (UMG Göttingen) for helpful discussions and comments on the manuscript, Silvio Rizzoli (UMG Göttingen), Mark Frye (UCLA), and Wolfgang Stein for support and mentorship. Many thanks also to the Grass Foundation and 2021 Grass Fellows Bernardo Pinto, Duncan Leitch, Oscar Arenas Sabogal, Luis Bezares Calderon, as well as the 2021 Grass Director Melissa Coleman and Associate Director Laura Cocas and her postdoc Daniela Moura as well as the Trustees of the Foundation for support and constructive feedback. This work was supported by the Grass Foundation during the 2021 Grass Fellowship and by the UCLA Marion Bowen Postdoctoral Award.",True,False,False acknowledgement,10.48550/arxiv.2007.07757,doi10.48550/arxiv.2007.07757,"We are grateful to the Department of Science and Technology, India; Ministry of Electronics and Information Technology, India; as well as Intel India for the financial support of this project. We also thank the Japan International Cooperation Agency and IIT-Hyderabad for the provision of GPU servers used for this work. We thank Joseph KJ and Sai Srinivas for all the insightful discussions, that improved the presentation of this work.",True,False,False acknowledgement,10.21203/rs.3.rs-2259774/v1,doi10.21203/rs.3.rs-2259774/v1,Funding: This work was supported by Natural Science Foundation of China (no. 82160143) and Kidney Disease Engineering Research Center of Jiangxi Province (no. 20164BCD40095),True,False,False acknowledgement,10.48550/arxiv.2201.05501,doi10.48550/arxiv.2201.05501,"This work was supported in part by the National Natural Science Foundation of China under Grant 61901400, the Young Scholars Development Fund of SWPU under Grant 201899010157, and the Scientific Research Starting Project of SWPU under Grant 2019QHZ015.",True,False,False acknowledgement,10.21203/rs.3.rs-3198060/v1,doi10.21203/rs.3.rs-3198060/v1,"Acknowledgments: We thank Maggie Bayalis, Aubrey Inkster, Covel McDermot, Samantha Nestory, Nathaly Rodriguez, Carl Rosier, Gavin Rosier, and Noah Totsline for field and lab assistance. We thank Meghan Avolio for her contribution toward data analysis approaches and Vince D'Amico for forest site establishment. We acknowledge the University of Delaware Research Foundation and Delaware Environmental Institute for funding. We thank the Delaware Environmental Institute for fellowship awarded to Eric Moore. | This work was funded by the University of Delaware Research Foundation and Delaware Environmental Institute (DENIN). Author Eric R. Moore was awarded a fellowship and received research support from DENIN.",True,False,False acknowledgement,10.2139/ssrn.4728750,doi10.2139/ssrn.4728750,"This work is supported by the Australian Research Council through a Discovery Project Grant (DP170102324). Access KOWARI diffractometer was made possible an ANSTO Program Proposal PP6050 and regular the regular beamtime proposal P14244. Additional support from AINSE Limited was provided during the experimental work. | C.M. Wensrich would like to thank the Isaac Newton Institute for Mathematical Sciences for support and hospitality during the programme Rich and Non-linear Tomography: A Multidisciplinary Approach when work on this paper was undertaken. This program was supported by EPSRC grant number EP/R014604/1. | While in Cambridge, C.M. Wensrich received support from the Si- mons Foundation and would also like to thank Clare Hall for their support and hospitality over this period.",True,True,True acknowledgement,10.21203/rs.3.rs-277508/v1,doi10.21203/rs.3.rs-277508/v1,"This work was supported by grants from the National Research Foundation (NRF) of Korea (NRF2019R1I1A1A01063525 to S-H.Han), from the Korea Health Technology R&D Project through Korea Health Industry Development Institute (KHIDI), funded by the Ministry of Health & Welfare, Republic of Korea (HI19C1132, HU20C0187, HU20C0198 to I. Mook-Jung), from the NRF (2018R1A5A2025964 to I. Mook-Jung, 2014M3C7A1046042 to D.Y.Lee), and from KHIDI (HI18C0630 & HI19C0149 to D.Y.Lee).",True,False,False acknowledgement,10.48550/arxiv.1104.4099,doi10.48550/arxiv.1104.4099,*This research was supported by DAAD.,True,False,False acknowledgement,10.21203/rs.3.rs-2499671/v1,doi10.21203/rs.3.rs-2499671/v1,"Funding: This study was supported by grants from the Swedish Research Council grant 2019-01394, the Inga-Britt and Arne Lundberg Research Foundation, the Swedish Kidney Foundation, John and Brit Wennerström's Research Foundation, Bertil and Berit Adströms Research Foundation, and grants from the Swedish state under the ALF agreement (2019-965544 to J.N. and 2018-727101 to G.G).",True,False,False acknowledgement,10.48550/arxiv.2410.19977,doi10.48550/arxiv.2410.19977,"We would like to thank Jeremy Baier and members of the NANOGrav Detection Working group for useful comments on the manuscript. JPS, XS, and DRM are members of the NANOGrav Collaboration. The NANOGrav collaboration receives support from National Science Foundation (NSF) Physics Frontiers Center award No. 2020265. This work is also partly supported by the George and Hannah Bolinger Memorial Fund in the College of Science at Oregon State University.",True,False,False acknowledgement,10.48550/arxiv.1805.07063,doi10.48550/arxiv.1805.07063,"It is a pleasure to thank Hartmut Löwen, Thomas Speck, Christian Holm, Joost de Graaf, Benno Liebchen, Aidan T Brown and Erdal C. Oğuz for the helpful discussions. We further thank Alexander Reinmüller, Christopher Wittenberg, Denis Botin, Julian Weber, Stanislav Khodorov for their contributions to the project. Internship students Hannah Müller, Songkran Vongsilathi (Thailand) and Zhujun Wu (China) are also acknowledged. We gratefully acknowledge the DFG for financial support (SPP1726, Grants No. PA 459/18-1,2).",True,False,False acknowledgement,10.48550/arxiv.2208.04899,doi10.48550/arxiv.2208.04899,All spectral observations reported in this paper were obtained with the Southern African Large Telescope (SALT) under program 2020-1-MLT-002 (PI: Alexei Kniazev). The work was partly supported by the Russian Foundation for Basic Researches (project 19-07-01198). A. K. acknowledges support from the National Research Foundation (NRF) of South Africa.,True,False,False acknowledgement,10.1101/2022.04.06.487330,doi10.1101/2022.04.06.487330,"This work was supported by Umeå University Medical Faculty, Umeå Sweden (D.M.); StratNeuro, Umeå University, Umeå Sweden (D.M.); Swedish Research Council, Stockholm, Sweden (Grant 2018-01047) (M.L.); Kempe Foundation, Örnsköldsvik, Sweden (Grant JCK-1922.2) (D.M., F.S.); Insamlingsstiftelsen för medicinsk forskning 2019 (D.M.); Magnus Bergvalls Stiftelse, Stockholm, Sweden (Grant 2016-01639) (D.M.); Swedish Research Council, Stockholm, Sweden (2015-01717) (C.B.); Agence Nationale pour la Recherche (ANR-16-CE28-0008-01) (C.B.). H.M.E-S was supported by a grant from the Agencia Canaria de Investigación, Innovación y Sociedad de la Información (ACIISI) of the Regional Consejería de Economía, Industria y Comercio, Canary Islands Government and European Social Fund [Canarias 2014-2020, Axis 3 Priority Theme 74 (85%)]. We also would like to acknowledge the Small Animal Research and Imaging Facility (SARIF) at Umeå University for providing the MRI equipment to perform the study and the Biochemical Imaging Center at Umeå University (BICU) and National Microscopy Infrastructure, NMI (VR-RFI 2019-00217) for providing assistance in microscopy. With great appreciation, we also thank Dr. Seong-Gi Kim and Dr. Won Beom Jung for providing the mask of the fMRI-based sensorimotor cluster reported in Jung et al., NeuroImage, 2019.",True,False,False acknowledgement,10.26434/chemrxiv-2022-mqbgv,doi10.26434/chemrxiv-2022-mqbgv,"This work was financially supported by CREST (JST Grant No.: 18070940) and a Grant-in-Aid for Scientific Research (JSPS Grant No.: 21H05215), Japan. We thank Ms. Kaneda (Instrumental Analysis Center, YNU) for technical support with TEM measurements. H-NMR measurements were carried out at Instrumental Analysis Center, YNU.",True,False,False acknowledgement,10.21203/rs.3.rs-437125/v1,doi10.21203/rs.3.rs-437125/v1,"This manuscript was finished before 2020. This research was supported by the Chinese Academy of Sciences Strategic Priority Research Program (Grant XDA19070403), National key research and development program of China (2016YFA0601802) and the National Natural Science Foundation of China (Grant numbers: 41790473 and 41430533). A. Dai acknowledges the funding support from the U.S. National Science Foundation (Grant Nos. AGS-2015780 and OISE-1743738).",True,False,True acknowledgement,10.1101/585737,doi10.1101/585737,"Acknowledgement: This work and CYB, YYB, SA, NJK, CB are supported by Agence Nationale de la Recherche, France (Grant ANR-12-PDOC-0028- Project Apicolipid), the Atip-Avenir and Finovi programs (CNRS-INSERM-FinoviAtip-AvenirApicolipid projects), and the Laboratoire d' Excellence Parafrap, France (grant number ANR-11-LABX-0024). CYB and GIM are supported by the LIA CNRS Program (Apicolipid project). MAH is supported by European Research Council (ERC consolidator grant 614880) and the Laboratoire d'Excellence Parafrap, France (grant number ANR-11-LABX-0024).",True,False,False acknowledgement,10.48550/arxiv.1503.07383,doi10.48550/arxiv.1503.07383,"The work of FB was supported by the DFG-Collaborative Research Center, TRR 109, ""Discretization in Geometry and Dynamics."" The work of PJF was supported by the Australian Research Council through the grant DP140102613.",True,False,False acknowledgement,10.48550/arxiv.1209.2642,doi10.48550/arxiv.1209.2642,† Uwe Brauer's research was partially supported by grant MTM2012-31928. | *Research supported ORT Braude College's Research Authority.,True,False,False acknowledgement,10.1002/essoar.10511879.1,doi10.1002/essoar.10511879.1,"We would like to acknowledge high-performance computing support from Cheyenne (https://doi.org/10.5065/ D6RX99HX) provided by NCAR's Computational and Information Systems Laboratory, sponsored by the National Science Foundation. Support was provided by the Atkinson Center for Sustainability at Cornell University for EMB, DV and DGM; and by the National Science Foundation through agreement CBET-1818759 for DV and DGM. This material is based upon work supported by the National Center for Atmospheric Research, which is a major facility sponsored by the National Science Foundation under Cooperative Agreement no. 1852977, and by SilverLining through its Safe Climate Research Initiative.",True,True,False acknowledgement,10.48550/arxiv.2310.10404,doi10.48550/arxiv.2310.10404,"This work was supported by Institute of Information & communications Technology Planning & Evaluation (IITP) grant funded by the Korea government(MSIT) (No.2020- 0-00004, Development of Previsional Intelligence based on Long-term Visual Memory Network, No.2022-0-00077, Reasoning, and Inference from Heterogeneous Data, No. 2019-0-00079, Artificial Intelligence Graduate School Pro-gram, Korea University).",True,False,False acknowledgement,10.48550/arxiv.2405.13857,doi10.48550/arxiv.2405.13857,Eman Alashwali acknowledges the financial support of the Ibn Rushd Program at King Abdullah University of Science and Technology (KAUST). This work was funded in part by the Innovators Network Foundation. The authors thank the participants for their time and valuable insights.,True,False,False acknowledgement,10.21203/rs.3.rs-1326573/v1,doi10.21203/rs.3.rs-1326573/v1,"Research in the authors' laboratory is supported by the CNRS, University Toulouse III, FRM (Fondation pour la Recherche Médicale), La Ligue Contre le Cancer 31, La Société Française d'Hématologie (SFH), the China Scholarship Council and the CNRS « Groupement de recherche 3740 ».",True,False,False acknowledgement,10.48550/arxiv.hep-ex/0010079,doi10.48550/arxiv.hep-ex/0010079,*Work supported by the Federal Ministry for Education and Research of Germany,True,False,False acknowledgement,10.48550/arxiv.2206.08790,doi10.48550/arxiv.2206.08790,This work has been partially supported by MIAI @ Grenoble Alpes (ANR-19-P3IA-0003). The authors would like to thank Julien Diard and Laurent Girin for fruitful discussions.,True,False,False acknowledgement,10.48550/arxiv.2310.14761,doi10.48550/arxiv.2310.14761,"Acknowledgements. The author is grateful to Pierre Berger, Viktor Ginzburg, Başak Gürel and Sobhan Seyfaddini for useful discussions. This work is supported by the ERC Starting Grant 851701.",True,False,False acknowledgement,10.48550/arxiv.1807.07467,doi10.48550/arxiv.1807.07467,The authors acknowledge the support from the H2020 OPTICON Joint Research Network. DD and OA thank the Belgian national funds for scientific research (FNRS). SK acknowledges support from an ERC Starting Grant (Grant Agreement No. 639889) and STFC Rutherford Fellowship (ST/J004030/1).,True,False,False acknowledgement,10.48550/arxiv.1112.1453,doi10.48550/arxiv.1112.1453,"Acknowledgements: The research of the first author was supported partially by the Direct Grant 2010/2011 from CUHK and by the General Research Fund (Project No. 400511) from RGC of Hong Kong. The research of the second author was supported by the General Research Fund of Hong Kong, CityU No.103108, and the Croucher Foundation. And research of the third author was supported by the grants from the National Natural Science Foundation of China under contracts 10871151 and 10925103. This work is also supported by ""the Fundamental Research Funds for the Central Universities"".",True,False,False acknowledgement,10.26434/chemrxiv-2023-4ndh3,doi10.26434/chemrxiv-2023-4ndh3,"We thank William W. Parson and Daniel C. Ducat for insightful discussion on the nature of electron transfers in heme containing proteins. J.H., D.M.K., and J.V.V. are supported in part by the U.S. Department of Energy, Office of Basic Energy Sciences under grant number DE-FG02-91ER20021. D.M.O. was supported by the XSEDE EMPOWER program under National Science Foundation grant number ACI-1548562. This work was supported in part through computational resources and services provided by the Institute for Cyber-Enabled Research at Michigan State University.",True,False,False acknowledgement,10.48550/arxiv.2107.04066,doi10.48550/arxiv.2107.04066,"This work was partially supported by the NSF postdoctoral fellowship DMS-2013073, NSF grants DMS- 1744551, DMS-2005328, DMS-2102018, and the Sloan Foundation.",True,False,False acknowledgement,10.21203/rs.3.rs-3839089/v1,doi10.21203/rs.3.rs-3839089/v1,"This work was supported by the Natural Science Foundation Committee of China (Grant No.82172009), Shanxi Bethune Hospital of Shanxi Medical University (Grant No. 2023GZRZ04), Natural Science Foundation of Shanxi Province of China (Grant No. 202303021221200).",True,False,False acknowledgement,10.26434/chemrxiv-2023-07rdd,doi10.26434/chemrxiv-2023-07rdd,"This work was financially supported by JST-ERATO (JPMJER1903), JSPS-WPI, and Grants-in-Aid for Challenging Research (Exploratory) (21K18945), Scientific Research (B) (22H02069), Transformative Research Areas (A) (Digitalizationdriven Transformative Organic Synthesis (Digi-TOS)) (22H05330), and Young Scientists (22K14673). T.M. thanks the Uehara Memorial Foundation and the Naito Foundation for financial support.",True,False,False acknowledgement,10.48550/arxiv.2311.03499,doi10.48550/arxiv.2311.03499,*F.B. was partly funded by the NSF grant DMS-2247117 when most of this research was conducted. †L.C. is partly funded by the Simons Foundation Travel Support for Mathematicians Grant #853249.,True,False,False acknowledgement,10.1101/2023.03.22.533736,doi10.1101/2023.03.22.533736,Acknowledgements: This work was supported by grants from the Fonds National pour la Recherche Scientifique (F.R.S.-FNRS PDR T.0042.15) and the Special Funds for Research from the University of Liège (FSR-S-SS-19/40) and a research project (E4Liberty) with Mithra Pharmaceuticals. CdB was a Post-doctoral Researcher of the F.R.S.-FNRS and CAC is a Research Director of the F.R.S.-FNRS. We thank Laura Vandries and Céline Roomans for their help with the immunostaining and Arlette Gérard for carrying out the RIA assay.,True,False,False acknowledgement,10.1101/2021.06.14.448415,doi10.1101/2021.06.14.448415,"We gratefully acknowledge funding from NIH grants 1R01HG008754 (D.K.G.) and 1R01NS109217 (D.K.G.), and National Science Foundation Graduate Research Fellowship (1122374) (J.H.).",True,False,False acknowledgement,10.48550/arxiv.2010.01592,doi10.48550/arxiv.2010.01592,This research work was funded by the Department of Information Security and Communication Technology at the Norwegian University of Science and Technology.,True,False,False acknowledgement,10.48550/arxiv.1709.02483,doi10.48550/arxiv.1709.02483,Acknowledgements. We would like to thank Emily Frey \( { }^{1} \) for helpful discussions regarding this paper. The first author was supported in part by an NSA Young Investigator Grant and wishes to thank that organization for financial support.,True,False,False acknowledgement,10.48550/arxiv.2311.18277,doi10.48550/arxiv.2311.18277,Nilanjana Laha's research has been partially supported by the NSF-DMS grant DMS-2311098.,True,False,False acknowledgement,10.48550/arxiv.2101.06217,doi10.48550/arxiv.2101.06217,*supported by TCS Research Fellowship,True,False,False acknowledgement,10.48550/arxiv.2006.03922,doi10.48550/arxiv.2006.03922,"We acknowledge Dr. Wilbert van Panhuis (University of Pittsburgh) and Dr. Michael Johannson (US CDC) for discussions and support throughout the process of designing Zoltar. This work has been supported by the National Institutes of General Medical Sciences (R35GM119582, PI: Reich) through the Modeling of Infectious Disease Agents Study (MIDAS). The content is solely the responsibility of the authors and does not necessarily represent the official views of NIGMS, MIDAS, or the National Institutes of Health.",True,False,False acknowledgement,10.1101/2020.12.04.411843,doi10.1101/2020.12.04.411843,"We thank the staff of the Genomics section of the Life Sciences Core Facility (LaCTAD), part of the University of Campinas (UNICAMP), for their contributions to RNA-sequencing. J.D.N., D.Z-M. and E.S.N. were partially supported by NIH R21 AI124797. M.L.R. was supported by grants from the Brazilian Ministry of Health (grant number 440015/2018-9), Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq, grants 405520/2018-2, and 301304/2017-3) and Fiocruz (grants VPPCB-007-FIO-18 and VPPIS-001FIO18). The authors also acknowledge support from the Instituto Nacional de Ciência e Tecnologia de Inovação em Doenças de Populações Negligenciadas (INCT-IDPN). M.L.R. is currently on leave from the position of Associate Professor at the Microbiology Institute of the Federal University of Rio de Janeiro, Brazil. LRA received financial support from Inova Fiocruz/Fundação Oswaldo Cruz [Grant number VPPCB-07-FIO-18-2-52] and CNPq [Grant number 442317/2019-0]. L.R.A is a research fellow awardee from CNPq.",True,False,False acknowledgement,10.21203/rs.3.rs-3288122/v1,doi10.21203/rs.3.rs-3288122/v1,Australian Research Council (Grant number; DP150104199 and DP190101968).,True,False,False acknowledgement,10.48550/arxiv.2112.07530,doi10.48550/arxiv.2112.07530,"The authors thank Andrew Childs and Bibhusa Rawal for useful discussions. Work of Jonathan Katz was supported in part by financial assistance award 70NANB19H126 from the U.S. Department of Commerce, National Institute of Standards and Technology. Work of Christian Majenz was funded by a NWO VENI grant (Project No. VI.Veni.192.159). Gorjan Alagic acknowledges support from the U.S. Army Research Office under Grant Number W911NF-20-1-0015, the U.S. Department of Energy under Award Number DE-SC0020312, and the AFOSR under Award Number FA9550-20-1-0108.",True,False,False acknowledgement,10.21203/rs.3.rs-910455/v1,doi10.21203/rs.3.rs-910455/v1,"This work was supported by emergency management project of National Natural Science Foundation of China (grant number 81541139) and research and development fund of Peking University People's Hospital (grant number RD 2016-14). The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.",True,False,False acknowledgement,10.48550/arxiv.2312.03543,doi10.48550/arxiv.2312.03543,"This research is supported by the Science and Technology Development Fund of Macau SAR (File no. 0021/2022/ITP, 0081/2022/A2, SKL-IoTSC(UM)-2021-2023/ORP/GA08/2022, SKL-IoTSC(UM)-2024-2026/ORP/GA06/2023), and University of Macau (SRG2023-00037-IOTSC). We extend our gratitude to the Institute for Advanced Studies in Humanities and Social Sciences (IAS) for their valuable assistance. For any correspondence regarding this paper, please contact Dr. Zhenning Li at zhenningli@um.edu.mo or Dr. Chengzhong Xu at czxu@um.edu.mo.",True,False,False acknowledgement,10.21203/rs.3.rs-394222/v1,doi10.21203/rs.3.rs-394222/v1,"The authors are thankful to the editors and the anonymous reviews for their valuable comments and suggestions on this paper. This work was supported by the Beijing Natural Science Foundation of China (9192006), the National Natural Science Foundation of China (72073008, 71704047), the Science Foundation of Ministry of Education of China (17YJC790015), Capital Circulation Research Base of China (JD-ZD-2021-003), and the Science and Technology Innovation Service Ability-Beijing Technology and Business University Cultivation Funds of Outstanding Youth Scholars (19008020111) for their financial support.",True,False,False acknowledgement,10.21203/rs.3.rs-1875833/v1,doi10.21203/rs.3.rs-1875833/v1,"This work was supported by the National Key Research and Development Program of China (Nos. 2017YFA0303600, 2019YFA0307800), the National Natural Science Foundation of China (Nos. 12174406, 11874367, 51931011, 52127803), the Key Research Program of Frontier Sciences, Chinese Academy of Sciences (No. ZDBS-LY-SLH008), K.C.Wong Education Foundation (GJTD-2020-11), the 3315 Program of Ningbo, the Natural Science Foundation of Zhejiang province of China (No. LR20A040001), the Beijing National Laboratory for Condensed Matter Physics.",True,False,True acknowledgement,10.48550/arxiv.2409.12339,doi10.48550/arxiv.2409.12339,"*This work is supported by the Helmholtz Association under the joint research school ""Munich School for Data Science - MUDS"".",True,True,False acknowledgement,10.48550/arxiv.2112.00854,doi10.48550/arxiv.2112.00854,Acknowledgements The project is supported in part by Grant #1749833 from the National Science Foundation of United States. Our experiments were performed on the University of Massachusetts Amherst GPU cluster obtained under the Collaborative Fund managed by the Mass. Technology Collaborative.,True,False,False acknowledgement,10.21203/rs.3.rs-3235774/v1,doi10.21203/rs.3.rs-3235774/v1,"We thank the staff of the M. C. & M. L. Inchausti School for allowing us to use the facilities on sampling days, for letting us remain in the School's field during the sampling days, and for providing us with the necessary information for this investigation. We are grateful to Dr. Gabriela Küppers; Dr. Cristina Claps, and Dr. Augusto Salas, for their contributions and availability in the determination of the different groups of organisms. We extend our thanks to the Institute of Limnology Dr. Raúl A. Ringuelet for the use of the facilities and vehicles for campaign trips and to CONICET for financing the doctoral thesis from which this research arose. This work was partially funded by the Argentine Agency for Science and Technology promotion (ANPCyT; PICT 0228), the National Council of Sciences and Technology (CONICET), and the La Plata National University (Grant N849). Finally, we are grateful to the Cuenca del Salado laboratory for their unconditional support in carrying out these experiments. Dr. Donald F. Haggerty, a retired academic career investigator and native English speaker, edited the final version of the manuscript.",True,False,False acknowledgement,10.21203/rs.3.rs-907809/v1,doi10.21203/rs.3.rs-907809/v1,"This work was support by the National Natural Science Foundation of China (Grant No.12064008; No.61502127), and the Key Science and Technology Project of Haikou, Hainan, China (Grant No. 2020-14;No.2020-44; No.2020-053).",True,False,False acknowledgement,10.1101/531749,doi10.1101/531749,"This work was supported by NIH Grants D43 TW007391, U01AI115648, R01AI051584, R03TW008413 and R03TW009444 to SA. Grant R21AI109263 to GA and SA from NIH-NIAID, Grant U54HG003079 from NIH-NHGRI to RKW and SA, McDonnell Genome Institute at Washington University School of Medicine. Partial funding from the National Research Foundation to HGM (Grant # 10924). Swiss National Science Foundation grant PP00P3_170664 to RMW. This research was partially supported by the Slovak Research and Development Agency under the contract No. APVV-15-0604 entitled ""Reduction of fecundity and trypanosomiasis control of tsetse flies by the application of sterile insect techniques and molecular methods"".",True,False,False acknowledgement,10.1101/2020.11.02.365379,doi10.1101/2020.11.02.365379,"The authors thank the LOEWE-Centre TBG funded by the Hessen State Ministry of Higher Education, Research and the Arts (HMWK) for the financial support.",True,False,False acknowledgement,10.1364/opticaopen.22691893.v2,doi10.1364/opticaopen.22691893.v2,Engineering and Physical Sciences Research Council (EP/R011230/1). | The authors thank the Engineering and Physical Sciences Research Council (EPSRC) for fu acknowledges financial support from the China Scholarship Council (Grant No. 201808430227),True,False,False acknowledgement,10.48550/arxiv.2409.05711,doi10.48550/arxiv.2409.05711,"This work was supported by the National Science Foundation under grant Nos. AST-2009253, AST-2009398, and by NASA's Planetary Science Division Internal Scientist Funding Program through the Fundamental Laboratory Research work package (FLaRe). This work makes use of ALMA data set ADS/JAO.ALMA#2018.1.01114.S. ALMA is a partnership of ESO (representing its member states), NSF (USA) and NINS (Japan), together with NRC (Canada), NSTC and ASIAA (Taiwan), and KASI (Republic of Korea), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO and NAOJ. The National Radio Astronomy Observatory is a facility of the National Science Foundation operated under cooperative agreement by Associated Universities, Inc.",True,True,False acknowledgement,10.21203/rs.3.rs-26128/v5,doi10.21203/rs.3.rs-26128/v5,"This study was financially supported by the National Natural Science Foundation of China (3187131721), the earmarked fund for Modern Agro-industry Technology Research System (CARS-40-K12), China Agriculture Research System-Beijing Team for Poultry Industry (CARS-PSTP, Beijing, China), and the Agricultural Science and Technology Innovation Program (ASTIP) of the Chinese Academy of Agricultural Sciences. Apart from providing funds, they were not involved in the study design, data collection, analysis, interpretation, or manuscript writing.",True,True,False acknowledgement,10.21203/rs.3.rs-39220/v2,doi10.21203/rs.3.rs-39220/v2,"This work was funded by Grant E-26/102.287/2013 from Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro-FAPERJ (http://www.faperj.br), Conselho Nacional de Desenvolvimento Científico e Tecnológico-CNPq (http://www.cnpq.br) 305553/2014-3, 454665/2014-8. The household survey was conducted as part of RML PhD. RML was supported by PhD fellowship from Brasil Sem Miséria Program of Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (http://www.capes.gov.br). RML is supported by PDJ INOVA Fiocruz fellowship. The funding agencies had no role in the design, collection, analysis or interpretation of the data.",True,False,False acknowledgement,10.26434/chemrxiv.14637741.v1,doi10.26434/chemrxiv.14637741.v1,Financial support comes from the NSF CHE-1903808 grant to A.N.A. We also acknowledge UCLA-IDRE and XSEDE for providing computational resources.,True,False,False acknowledgement,10.1101/613273,doi10.1101/613273,We thank the DRC government and ICCN for facilitating sample collection and the 200 Mammals Consortium for providing assemblies of Cercopithecus neglectus and Erythrocebus patas. Sequencing was performed by the SNP&SEQ Technology Platform in Uppsala. The facility is part of the National Genomics Infrastructure (NGI) Sweden and Science for Life Laboratory. The SNP&SEQ Platform is also supported by the Swedish Research Council and the Knut and Alice Wallenberg Foundation. The authors acknowledge support from the Uppsala Multidisciplinary Centre for Advanced Computational Science for assistance with massively parallel sequencing and access to the UPPMAX computational infrastructure. This work was supported by FORMAS (2016-00835) to K.G.,True,True,False acknowledgement,10.1364/opticaopen.22057295,doi10.1364/opticaopen.22057295,"Funding. This research was supported by Gansu Provincial Science and Technology Innovative Talent Program: High-level Talent and Innovative Team Special Project (Chief Scientist System, No.22JR9KA001), the Second Tibetan Plateau Scientific Expedition and Research Program (STEP), the National Natural Science Foundation of China (41975019), Higher Education Discipline Innovation Project (B 13045), and the Fundamental Research Funds for the Central Universities (lzujbky-2022-kb10 and lzujbky-2022-kb11).",True,False,False acknowledgement,10.31223/x5pw77,doi10.31223/x5pw77,DJJvH and SHAvdL acknowledge NWO Vici grant 865.17.001. PJJK acknowledges funding from the New Zealand Government (MBIE Contract: CONT-42907-EMTR-UOW).,True,False,False acknowledgement,10.1101/2021.06.19.449089,doi10.1101/2021.06.19.449089,"This work was supported by Australia Research Council DP210101875 to K.P. The support of Shenzhen Science and Technology Program (Grant No. KQTD20170330155106581), and the Major Program of Shenzhen Bay Laboratory S201101001 is also acknowledged.",True,False,False acknowledgement,10.21203/rs.3.rs-566565/v1,doi10.21203/rs.3.rs-566565/v1,- Funding: This study was supported by the National Natural Science Foundation of China under grant no. NSFC-71771052.,True,False,False acknowledgement,10.1101/2023.03.18.533299,doi10.1101/2023.03.18.533299,"This research was funded by: Pilot grants from the Fred & Pamela Buffett Cancer Center (HB \& VB); Department of Defense grants W81XWH-17-1-0616 and W81XWH-20-1-0058 to HB and W81XWH-20-1-0546 to VB; the NIH grants R21CA241055 and R03CA253193 to VB; the NIH Pathway to Independence Award R00 GM1287671 and the NIH MIRA award R35 GM147467 (to M.J.R.); the Raphael Bonita Memorial Fund; and support to UNMC core facilities from the NCI Cancer Center Support Grant (P30CA036727) awarded to Fred \& Pamela Buffett Cancer Center and from the Nebraska Research Initiative. AMB, SC and IM received the University of Nebraska Medical Center Graduate Student Fellowships. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH, Department of Defense, or other funding agencies.",True,False,False acknowledgement,10.48550/arxiv.astro-ph/0108352,doi10.48550/arxiv.astro-ph/0108352,"This research was supported in part by the KRF No. 2000-015-DP0445, by the Korea MOST Grant Star No. Star 00-2-500-00, and by the KOSEF Grant No. 2000-1-113-001-5 to KAO. SH is thankful to staff of the KISTI for permission to use their Compaq GS320 supercomputer. We also thank the referee Dr. M. Peimbert, for a careful review and valuable suggestions and Dr. A. Fletcher (KAO) for help with the preparation of this paper. | The research of GM has been made possible by a fellowship of the Royal Netherlands Academy of Arts and Sciences.",True,False,False acknowledgement,10.48550/arxiv.2308.11533,doi10.48550/arxiv.2308.11533,R.C. was partially supported by an NSERC Discovery Grant (RGPIN-03600-2022). RMS was partially supported by an NSERC Discovery Grant (RGPIN-2017-05514).,True,False,False acknowledgement,10.21203/rs.3.rs-1119314/v1,doi10.21203/rs.3.rs-1119314/v1,"This work was supported by the Key Research and Development Program of Shandong Province, China (2019JZZY020605), the Natural Science Foundation of the Jiangsu Higher Education Institution of China (19KJB180001), the National Natural Science Foundation of China (31700075), the Initial Research Funding of Changzhou University (ZMF17020115), the Extracurricular Innovation and Entrepreneurship Fund for College Students of Changzhou University (ZMF19020280).",True,False,False acknowledgement,10.2196/preprints.11298,doi10.2196/preprints.11298,"The study is being funded by a New Investigator Operating Grant from Research Manitoba awarded to the study primary investigator, MK.",True,False,False acknowledgement,10.21203/rs.3.rs-3315446/v1,doi10.21203/rs.3.rs-3315446/v1,"This work was supported by the National Natural Science Foundation of China (22178141 and 21978059), the Natural Science Foundation of Fujian Province of China (2022J01328) and Youth Science and Technology Innovation Foundation of Xiamen Ocean Development Bureau (23YYST063QCA17). | This work have been granted by the National Natural Science Foundation of China (22178141 and 21978059), the Natural Science Foundation of Fujian Province of China (2022J01328) and Youth Science and Technology Innovation Foundation of Xiamen Ocean Development Bureau (23YYST063QCA17).",True,False,False acknowledgement,10.1101/394148,doi10.1101/394148,We thank Nick McNair for assisting with data collection. This research was supported by an Australian Research Council Future Fellowship (FT120100816) and an Australian Research Council Discovery project (DP160101300) awarded to T.A.C. The authors acknowledge the University of Sydney HPC service for providing High Performance Computing resources. The authors declare no competing financial interests.,True,True,False acknowledgement,10.1101/2020.11.08.373001,doi10.1101/2020.11.08.373001,"This work was supported by the SUNY startup, the American Heart Association (AHA 17SDG33670339) and the National Institute of Arthritis and Musculoskeletal and Skin Diseases, NIAMS (R15AR074728) grants to B.K.D. N.M.R was supported by NIH training Grant T32 GM13206.",True,False,False acknowledgement,10.22541/au.159284997.74592636,doi10.22541/au.159284997.74592636,This work was supported by grant from the National Natural Science Foundation of China (31571574),True,False,False acknowledgement,10.1101/371062,doi10.1101/371062,"This research was supported by the Intramural Research Program of the National Institutes of Health, National Cancer Institute, and Center for Cancer Research. High-throughput imaging work was performed at the High-Throughput Imaging Facility (HiTIF)/Center for Cancer Research/National Cancer Institute/NIH.",True,False,False acknowledgement,10.1101/2024.06.11.598410,doi10.1101/2024.06.11.598410,"This work was supported by grants from the CHDI Foundation and UK Dementia Research Institute, which receives its funding from Dementia Research Institute Ltd, funded by the UK Medical Research Council, Alzheimer's Society and Alzheimer's Research UK.",True,False,False acknowledgement,10.48550/arxiv.2110.01311,doi10.48550/arxiv.2110.01311,"This work was supported by the Academy of Finland (Flagship programme: Finnish Center for Artificial Intelligence FCAI, and grants 319264, 292334).",True,False,False acknowledgement,10.1101/2024.03.14.584926,doi10.1101/2024.03.14.584926,"Funding: This research was funded by the National Natural Science Foundation of China, grant numbers 82373772 and 82204256, Hunan Provincial Natural Science Foundation of China, grant numbers 2022JJ40408, the Chinese Ministry of Education 111 Project, grant number BP0820034.",True,False,False acknowledgement,10.48550/arxiv.2109.14965,doi10.48550/arxiv.2109.14965,"Funding. Funding for this work comes from the Science Foundation Ireland Centre for Research Training in Digitally Enhanced Reality (D-REAL) under Grant No. 18/CRT/6224 and ADAPT SFI Centre for Digital Content Technology, funded by Science Foundation Ireland through the SFI Research Centres Programme and co-funded under the European Regional Development Fund (ERDF) through Grant # 13/RC/2106_P2",True,False,False acknowledgement,10.48550/arxiv.1610.09922,doi10.48550/arxiv.1610.09922,"This work was supported by the National Natural Science Foundation of China Grant Nos. (61435007, 11175094 , 91221205), the National Basic Research Program of China (2015CB921002).",True,False,False acknowledgement,10.21203/rs.3.rs-4020346/v1,doi10.21203/rs.3.rs-4020346/v1,"This article is part of a project supported by the Harran University Scientific Research Cordinatorship, grant numbers 22192.",True,False,False acknowledgement,10.1101/2023.01.04.522803,doi10.1101/2023.01.04.522803,This work was supported by the National Institutes of Health grants R01 HG010086 and R56 HG011509. This research has been conducted using the UK Biobank Resource under Application Number 24247.,True,False,False acknowledgement,10.48550/arxiv.2111.10539,doi10.48550/arxiv.2111.10539,"This research was partially supported by NSFC (No. 61876117, 61876217, 61872258, 61728205), ESP of the State Key Laboratory of Software Development Environment, and PAPD of Jiangsu Higher Education Institutions.",True,False,True acknowledgement,10.1101/744623,doi10.1101/744623,"For financial support we thank the ACS-PRF DNI #57209-DNI2 (WDL/YW), the Walter & Constance Burke Fund at Dartmouth College (WDL) and the NASA award NNX15AH79H; Swiss National Science Foundation (YW); and the Gordon and Betty Moore Foundation and NSF- 1702262 (AP/FJE). We thank the other members of the Leavitt and Pearson labs for thoughtful discussion and support.",True,False,False acknowledgement,10.21203/rs.3.rs-4142601/v1,doi10.21203/rs.3.rs-4142601/v1,"Funding: This research received external funding from the Tertiary Education Trust Fund (TETFund), Nigeria under the Academic Staff Training and Development (AST&D) intervention. | Acknowledgments: The Principal Researcher (Cornelius C. Ahanotu) wishes to gratefully acknowledge the funding granted by the Tertiary Education Trust Fund (TETFund), Nigeria for carrying out the research through the Academic Staff Training and Development (AST&D) Interventions.",True,False,False acknowledgement,10.48550/arxiv.2103.00116,doi10.48550/arxiv.2103.00116,"We acknowledge the computational resources granted from RWTH Aachen University under project RWTH0508. This work was supported in part by the Deutsche Forschungsgemeinschaft (SFB 917) and in part by the Federal Ministry of Education and Research (BMBF, Germany) in the project NEUROTEC (16ES1133 K). We also acknowledge the work of Carl-Friedrich Schön who helped with the calculation of ES/ET and Sophia Wahl who took part in the discussion on the link between sample reflectance and the minimum time for crystallization. H.T. acknowledges Grants-in-Aid for Scientific Research (A) (JP18H03675) and Specially Promoted Research (JP20H05619) from the Japan Society for the Promotion of Science (JSPS). The critical reading of the manuscript by Christophe Bichara is gratefully acknowledged.",True,False,False acknowledgement,10.21203/rs.3.rs-4385787/v1,doi10.21203/rs.3.rs-4385787/v1,"This work was supported by the Guangzhou Municipal Science and Technology Project (2024A03J0427, 2023A03J0508, and 201704030132) and the Guangdong Medical Research Foundation (A2022209). The funders had no role in the study design, data collection or analysis, or preparation of the manuscript.",True,True,False acknowledgement,10.21203/rs.3.rs-2729814/v1,doi10.21203/rs.3.rs-2729814/v1,This study was supported by the office of the Vice-president for Research of the Universidad de Nariño (VIIS-UDENAR).,True,False,False acknowledgement,10.1101/2021.07.12.452093,doi10.1101/2021.07.12.452093,"Studies were supported by the National Institutes of Health (Grants R01-EY-027786 and P30-EY-026877), the Department of Defense (Grant W81XWH-19-1-0738), AFOSR (Grant FA9550-19-1-0402), Wu Tsai Institute of Neurosciences at Stanford, and unrestricted grant from Research to Prevent Blindness. Photovoltaic arrays were fabricated at the Stanford Nano Shared Facilities (SNSF) and Stanford Nanofabrication Facility (SNF), which are supported by the National Science Foundation award ECCS1542152. K.M. was supported by a Royal Academy of Engineering Chair in Emerging Technology, UK. We would like to thank Dr. Tong Ling for his help with the design and assembly of the optical system for prosthetic acuity measurements and its software.",True,False,False acknowledgement,10.1101/2023.08.03.551806,doi10.1101/2023.08.03.551806,"R.M. was supported by the Vienna Science and Technology Fund (WWTF) through project CS11-008 to C.S. and T.B. (2012-2015) and the Austrian Science Fund (FWF) through project Y366-B17 to T.B. S.R. was supported by QR funds at Anglia Ruskin University awarded to R.M (2023). | R.M, T.B. and C.S. provided direct funding support.",True,False,False acknowledgement,10.26434/chemrxiv-2022-cj4tx,doi10.26434/chemrxiv-2022-cj4tx,"This study was supported by the National Key R&D Program of China (2021YFA1200400), the National Natural Science Foundation of China (No. 91956108, 21871103, 22201256), and the Natural Science Foundation of Zhejiang Province (No. LZ22B010001). Funding provided by the Japan Society for the Promotion of Science (JSPS) KAKENHI (grant nos. 20H02698, 20H02552), Scientific Research on Innovative Areas ""Aquatic Functional Materials"" (grant no. 22H04562), Yazaki Memorial Foundation for Science and Technology, and the Ogasawara Foundation for the Promotion of Science and Engineering is also gratefully acknowledged.",True,False,False acknowledgement,10.1101/2024.01.03.573996,doi10.1101/2024.01.03.573996,"This work was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) grant SFB 1449-431232613, sub-project B02 (MW, GN); sub-project B01 (MO), sub-project C03 and Z01 (KP), and supported by Deutsche Forschungsgemeinschaft grant SFB TR84, sub-project Z01b (ADG) and sub-projects C06 and C09 (MW) and grant SFB 1340- 372486779, sub-project C02 (KP). Bundesministerium für Bildung und Forschung (BMBF) - MAPVAP grant 16GW0247 (GN, MW); BMBF - e:Med CAPSyS grant 01ZX1604B (MW); BMBF - e:Med SYMPATH grant 01ZX1906A (MW); Sanitätsakademie der Bundeswehr SoFo39K4 (CMZ), Charité 3R grant (CG), Jürgen Manchot Fundation Stipend (KAKL). The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.",True,False,False acknowledgement,10.48550/arxiv.1605.05825,doi10.48550/arxiv.1605.05825,"*This research was supported by the National Natural Science Foundation of China (Grants #10325101 and #11171076), and by Science and Technology Commission, Shanghai Municipality (Grant No.14XD1400400). The author would like to thank his advisor, Prof. Shanjian Tang from Fudan University, for helpful comments and discussions.",True,False,False acknowledgement,10.48550/arxiv.1709.09284,doi10.48550/arxiv.1709.09284,"This research was supported by SSHRC Grants 410-2010-242, 435-2013-0292 and 435-2018-1273, NSERC Grant 356491-2013, and Leibniz Association Grant SAW-2012-ifo-3.",True,False,False acknowledgement,10.48550/arxiv.2009.07214,doi10.48550/arxiv.2009.07214,"A. Ramadan is partially supported by NSF-DMS, # 1908626. A. Stefanov acknowledges partial support from NSF-DMS, # 1908626.",True,False,False acknowledgement,10.1101/2021.04.09.439135,doi10.1101/2021.04.09.439135,"This work was supported by funding from the UK Biotechnology and Biological Sciences Research Council (BB/M002128/1, BB/R001499/1 to J.M.C) and the Grant-in-Aid for Scientific Research Grant from the Japan Society for the Promotion of Science (15KK0254 to N.S.).",True,True,False acknowledgement,10.48550/arxiv.1511.07268,doi10.48550/arxiv.1511.07268,"The second author was partially supported by the Slovenian Research Agency (research program P1-0285 and research projects N1-0032, N1-0038, J1-5433, and J1-6720).",True,False,False acknowledgement,10.1101/2024.01.23.24301695,doi10.1101/2024.01.23.24301695,"Fundings This study was supported by a Grant-in-Aid for Scientific Research (C) from the Japan Society for the Promotion of Science (JSPS) (to SK, no. 22K11489), and Fukuoka University Institute for Physical Activity, Fukuoka, Japan.",True,False,False acknowledgement,10.48550/arxiv.2111.06145,doi10.48550/arxiv.2111.06145,"We thank Alpo Ahonen, Paula Holmlund and Harri Pohjonen for technical assistance and Terra Quantum AG for scientific support. KVP has been funded by the European Union's Horizon 2020 research and innovation programme under grant agreement no. 862644 (FET-Open project: Quantum readout techniques and technologies, QUARTET). The work at VTT has been funded from the EU Flagship on Quantum Technology Grant No. H2020-FETFLAG-2018-03 Project Nos. 820363 OpenSuperQ and 820505 QMiCS. This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement no. 824109 (supporting MRP, IL, MW, and AS), no. 862644 (FET-Open project QUARTET), and ERC grant agreement no. 670743 (QuDeT). PJH and VV acknowledge financial support from the Academy of Finland through grants nos. 314448 and 321700, respectively. The work of SHR and PJH was supported by MATINE research grant. GSP and KVP would like to thank Saab for scientific collaboration under a research agreement with Aalto University. This work has been done under the ""Finnish Center of Excellence in Quantum Technology QTF"" of the Academy of Finland, project nos. 312059, 312294, 312295, 336810, and 312296.",True,False,False acknowledgement,10.48550/arxiv.2303.09779,doi10.48550/arxiv.2303.09779,"This research was supported by the the National Research Foundation of Korea(NRF) grant funded by the Korea government(MSIT) (No.2022R1F1A1075019, No. 2021M3E8A2100446).",True,False,False acknowledgement,10.48550/arxiv.2011.10498,doi10.48550/arxiv.2011.10498,"We are indebted to helpful discussion with Borja Balle and Doina Precup. The paper also benefited from the feedback of several anonymous reviewers. The work began when A. Kaznatcheev was at the School of Computer Science, McGill University and completed thanks to the generous support of a James S. McDonnell Foundation Postdoctoral Fellowship for Understanding Dynamic \& Multi-scale Systems. P. Panangaden was supported by NSERC (Canada).",True,False,False acknowledgement,10.48550/arxiv.1611.09235,doi10.48550/arxiv.1611.09235,"The work described in this paper was supported by Research Grants Council of Hong Kong (PolyU 152094/14E), National Natural Science Foundation of China (61272291, 61672445) and The Hong Kong Polytechnic University (GYBP6, 4-BCB5, B-Q46C). The correspondence authors of this paper are Wenjie Li and Sujian Li.",True,False,False acknowledgement,10.26434/chemrxiv-2022-4hq5r,doi10.26434/chemrxiv-2022-4hq5r,"This research was supported in part by JSPS KAKENHI Grant-in-Aid for Challenging Research (Exploratory) (SI, Grant Number JP18K19384), Grant-in-Aid for Scientific Research(B) (TT, Grant Number JP18K19384), Grant Platform Project for Supporting Drug Discovery and Life Science Research (Basis for Supporting Innovative Drug Discovery and Life Science Research (BINDS)) from AMED (SI, Grant Number JP22ama121039) and The Akiyama Life Science Foundation (AK), and was partly supported by Hokkaido University, Global Facility Center (GFC), Pharma Science Open Unit (PSOU), funded by MEXT under ""Support Program for Implementation of New Equipment Sharing System"".",True,True,False acknowledgement,10.48550/arxiv.1603.09262,doi10.48550/arxiv.1603.09262,Acknowledgments: The first author was partially supported through NSF grant 1551514.,True,False,False acknowledgement,10.26434/chemrxiv-2023-ppzsj,doi10.26434/chemrxiv-2023-ppzsj,"J.B. received funding from Patheon Viral Vector Services to undertake this research. | The authors greatly acknowledge funding and support from Patheon, and greatly thank Anne Chen for her assistance with project management.",True,False,False acknowledgement,10.48550/arxiv.2304.11610,doi10.48550/arxiv.2304.11610,Acknowledgments. The authors acknowledge support of this research by Ministry of Innovative Development of the Republic of Uzbekistan (Grant No. FZ-20200929224).,True,False,False acknowledgement,10.21203/rs.3.rs-1506074/v2,doi10.21203/rs.3.rs-1506074/v2,The work was supported by the Medical and Health Science and Technology Plan Project of Zhejiang Province (grant # WKJ-ZJ-2110 to HLC) and the National Science & Technology Major Project of China (grant #2017ZX10204401 to LLT).,True,False,False acknowledgement,10.1101/2023.08.22.23294262,doi10.1101/2023.08.22.23294262,"We acknowledge the support of the Supercomputing Wales project, partly funded by the European Regional Development Fund (ERDF) via the Welsh Government. We thank Joanne Morgan, Lesley Bates, Catherine Bresner and Lucinda Hopkins (Cardiff University) for laboratory sample management. We also thank Adrian King (Magna Laboratories) for contributing to the sample collection and data preparation of CLOZUK3.",True,False,False acknowledgement,10.21203/rs.3.rs-3351739/v1,doi10.21203/rs.3.rs-3351739/v1,This project was supported by the NIHR HS&DR programme with grant number 131606. The views and opinions expressed herein are those of the authors and do not necessarily reflect those of the HS&DR programme.,True,False,False acknowledgement,10.1101/021113,doi10.1101/021113,This research was supported by National Institutes of Health DA017716 and DA016776 and the NIH/National Center for Research Resources UCSF-CTSI UL1 RR024131.,True,False,False acknowledgement,10.1101/2021.08.04.455053,doi10.1101/2021.08.04.455053,"The Authors thank the University of Padova to support L.C. as assistant professor and the IRCCS San Camillo Hospital, Venice, Italy. This work was supported by UniPD (STARs 2019: Supporting TAlents in ReSearch) and the Italian Ministry of Health (GR-2016-02363461) to L.C. L.I. is a postdoctoral fellow supported by UniPD. G.P. is supported by Fondazione Telethon (grant TDPG00514TA), MIUR (PRIN-2017ENN4FY), and Fondazione Cariplo (project 2019-3415). F.P. received support by Fondazione Caritro (project 2019.0230). R.B. is funded by Reta Lila Weston Institute and the British Neuropathological Society. S.H. is funded by the MJFF and by intramural funds from Rutgers University. We thank Dr. Alessandra Bellan for the technical support to the transfection of organotypic slices and Raffaella Cinquetti for the technical support to the electrophysiological experiments.",True,False,False acknowledgement,10.21203/rs.3.rs-1794554/v1,doi10.21203/rs.3.rs-1794554/v1,"The author(s) disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: This work was supported by the National Natural Science Foundation, China (No. 81870345), the Beijing Science and Technology Project (No. D171100002917004), the Grant of CAMS Initiative for Innovative Medicine, China (NO. 2016-I2M-1-016), and the Yunnan Provincial Cardiovascular Disease Clinical Medical Center Project (NO. FZX2019-06-01).",True,True,False acknowledgement,10.48550/arxiv.2204.01821,doi10.48550/arxiv.2204.01821,"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No. 817581) and was supported by the EPSRC Centre for Doctoral Training in Delivering Quantum Technologies, grant ref. EP/S021582/1. Google Cloud credits were provided by Google via the EPSRC Prosperity Partnership in Quantum Software for Modeling and Simulation (EP/S005021/1).",True,False,True acknowledgement,10.48550/arxiv.2003.07163,doi10.48550/arxiv.2003.07163,"Acknowledgements. The final part of this paper was written in OIST. The first author thanks Andrew Lobb for inviting him to ""Mini-Symposium : Knot Theory on Okinawa"" during 17-21 February 2020. He also thanks Kazuhiro Ichihara for telling him the paper [5] and Chuck Livingston for clarifying some confusing points on orientations in Section 2. The authors thank the referee for his/her careful reading and helpful comments. The first author was supported by the Research Promotion Program for Acquiring Grants in-Aid for Scientific Research (KAKENHI) in Ritsumeikan University. The second author was supported by JSPS KAKENHI Grant number JP18K13416.",True,False,False acknowledgement,10.48550/arxiv.2412.19608,doi10.48550/arxiv.2412.19608,"H.J. is supported by the NSFC (Grant No. 11935006, 12421005), the Sci-Tech Innovation Program of Hunan Province (Grant No. 2020RC4047), the National Key R&D Program (Grant No. 2024YFE0102400), and the Hunan Major Sci-Tech Program (Grant No. 2023ZJ1010). R.H. is supported by the RIKEN Special Postdoctoral Researchers (SPDR) program. X.-W.X. is supported by the NSFC (Grants No. 12064010), and the science and technology innovation Program of Hunan Province (Grant No. 2022RC1203). A.M. is supported by the Polish National Science Centre (NCN) under the Maestro Grant no. DEC-2019/34/A/ST2/00081. F.N. is supported in part by: Nippon Telegraph and Telephone Corporation (NTT) Research, the Japan Science and Technology Agency (JST) [via the CREST Quantum Frontiers program Grant No. JPMJCR24I2, the Quantum Leap Flagship Program (Q-LEAP), and the Moonshot R&D Grant No. JPMJMS2061], and the Office of Naval Research (ONR) Global (via Grant No. N62909-23-1-2074).",True,True,True acknowledgement,10.1101/2021.09.27.461916,doi10.1101/2021.09.27.461916,"This work was supported by a starting grant of the Forschungsverbund Molekulare Medizin, Universitätsmedizin Greifswald to FS and by a grant of the Federal Ministry of Education and Research (BMBF, grant 01GM1518B, STOP- FSGS) to NE. This work was generously supported by the Südmeyer fund for kidney and vascular research ('Südmeyer Stiftung für Nieren- und Gefäßforschung') and the Dr Gerhard Büchtemann fund, Hamburg, Germany. This work was also supported by the Fondation pour la Recherche Médicale (FRM, grant ""VALID"") to PLT. This work highly profited from the ImageJ image-analysis community and the open-source ZeroCostDL4Mic ecosystem. The expert technical assistance of Sindy Schröder, Vedran Drenic, and Marc Niemeyer is highly acknowledged.",True,False,False acknowledgement,10.48550/arxiv.2310.04609,doi10.48550/arxiv.2310.04609,This work was supported by the European Research Council under the European Union's Horizon 2020 research and innovation programme (grant agreement No. 851682 SPINRG).,True,False,False acknowledgement,10.48550/arxiv.2303.13271,doi10.48550/arxiv.2303.13271,"Acknowledgments: The authors thank M. Johnson, V. Marthi, K. Moriyama, D. Palumbo, and K. Sarkar for insights regarding the current and future VLBI observations. The authors thank A. Choudhury, K. Chandra, S. M. Chandran, A. Kushwaha, K. Rajeev, and S. Xavier for comments. JPJ was funded by IITB-IoE grant. The work is supported by the SERB-Core Research Grant.",True,False,False acknowledgement,10.48550/arxiv.1012.4150,doi10.48550/arxiv.1012.4150,*Partially supported by the NSF.,True,False,False acknowledgement,10.21203/rs.3.rs-154442/v1,doi10.21203/rs.3.rs-154442/v1,"This work was funded by Petróleo Brasileiro S.A. (Petrobras), Grant No. 0050.0079375.12.9, awarded to BCN. GMD is recipient of a postdoctoral fellowship from Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES-PrInt).",True,False,False acknowledgement,10.48550/arxiv.2003.05664,doi10.48550/arxiv.2003.05664,Acknowledgements CS was in part supported by ARC DP 'Deep learning that scales'.,True,False,False acknowledgement,10.1101/676288,doi10.1101/676288,We thank the Beilstein-Institut for supporting KA with a PhD scholarship and the Max Planck Society for financial support.,True,False,False acknowledgement,10.21203/rs.3.rs-3773747/v1,doi10.21203/rs.3.rs-3773747/v1,"LB was supported by the Dunedin Basic Medical Sciences Course Trust (Richard Stewart scholarship, Royal Australasian College of Surgeons (Hugh Johnston Travel Grant) and The Oxford Population Health (post-Master of Science research assistant position). STT was supported by the HRC and Girdlers' UK fellowship (Ref: 19/031) and Sir Charles Hercus Health Research Fellowship (Ref: 23/051). The authors declare that no funds, grants, or other support were received during the preparation of this manuscript. Note that these funding sources were not directly involved in this study or the decision to submit the paper for publication.",True,False,False acknowledgement,10.1101/745760,doi10.1101/745760,"This work was supported by the Gerstner Scholars Postdoctoral Fellowship and the Gerstner Family Foundation, the Lerner-Gray Fund for Marine Research, and the Richard Gilder Graduate School, American Museum of Natural History to BMT, and the National Museum of Natural History to CPM.",True,False,False acknowledgement,10.48550/arxiv.1810.04131,doi10.48550/arxiv.1810.04131,"Acknowledgments. Part of the work was performed when S.-P. Fu, S. Jiang, A. Klöckner, and M. Wala were participating the 2017 HKUST-ICERM workshop ""Integral Equation Methods, Fast Algorithms and Their Applications to Fluid Dynamics and Materials Science."" The authors thank the anonymous referees, Joshua Schrier, Jasun Gong, John Lowengrub and Jun Allard for valuable feedback. S. Jiang was supported by NSF under grants DMS-1418918 and DMS-1720405, and by the Flatiron Institute, a division of the Simons Foundation. A. Klöckner and M. Wala were supported in part by NSF under grants DMS-1418961 and DMS-1654756. Y.-N. Young was supported by NSF under grants DMS-1412789 and DMS-1614863.",True,False,False acknowledgement,10.21203/rs.3.rs-1922811/v1,doi10.21203/rs.3.rs-1922811/v1,This work was supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT). (No. 2020R1A2C101378712),True,False,False acknowledgement,10.21203/rs.3.rs-16712/v2,doi10.21203/rs.3.rs-16712/v2,"Supported by the National Institute of Mental Health (NIMH), National Cancer Institute (NCI), the Eunice Kennedy Shriver National Institute of Child Health & Human Development (NICHD) and the National Institute of Allergy and Infectious Diseases (NIAID) of the U.S. National Institutes of Health (NIH), as part of the International Epidemiologic Databases to Evaluate AIDS (IeDEA) under Award Number U01AI069919. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.",True,True,False acknowledgement,10.48550/arxiv.2503.13516,doi10.48550/arxiv.2503.13516,This work was funded by the National Natural Science Foundation of China (NSFC 12331018).,True,False,False acknowledgement,10.48550/arxiv.2309.10620,doi10.48550/arxiv.2309.10620,"This work was partially funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy - EXC 2070 – 390732324.",True,False,False acknowledgement,10.1101/2023.03.03.530964,doi10.1101/2023.03.03.530964,"S.A.S., K.S.M., Y.I.W., V.B., and E.V.K. are supported by the Intramural Research Program of the National Institutes of Health of the USA (National Library of Medicine). Work in the Peters lab was supported by NIH R01 GM129118 (J.E.P.).",True,False,False acknowledgement,10.1101/2023.04.24.537992,doi10.1101/2023.04.24.537992,H.-C.H. and T.-Y.W. contributed equally to this study. This work was supported by funding from National Institutes of Health grants HL135416 to K.-C.W. and HL145170 and HL108735 to Z.B.C. The authors thank Dr. Miyeko Mana and Clarissa Hoffman for their technical assistance.,True,False,False acknowledgement,10.48550/arxiv.2411.14330,doi10.48550/arxiv.2411.14330,"This work was funded in part by NSF PPoSS large grants CCF-2316159 and CCF-2316157. This material is based upon work supported by the Defense Advanced Research Projects Agency (DARPA) under Contract No. N66001-21-C-4023. Any opinions, findings and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of DARPA.",True,False,False acknowledgement,10.1101/2023.09.12.557229,doi10.1101/2023.09.12.557229,"Funding: The present study is a product of the Centre for Translational Biodiversity Genomics (LOEWE-TBG) as part of the ""LOEWE – Landes-Offensive zur Entwicklung Wissenschaftlich-ökonomischer Exzellenz"" program of Hesse’s Ministry of Higher Education, Research, and the Arts as well as the Leibniz Association. Field sampling for the study was provided by the Giraffe Conservation Foundation. | Acknowledgements: We thank an array of partners, in particular government and NGO partners across Kenya who collaborated with and/or financially supported the Giraffe Conservation Foundation to permit, collect and include samples in this analysis, including Cleveland Metroparks Zoo, Governments of Botswana, Chad, Ethiopia, Kenya, Namibia, Niger, Tanzania, Uganda, and Zambia, Ivan Carter Wildlife Conservation Alliance, and San Diego Zoo Wildlife Alliance. We also thank Emma Vinson for her assistance in coding the R script used for relatedness filtering.",True,False,False acknowledgement,10.1101/2023.01.06.523007,doi10.1101/2023.01.06.523007,"This work was supported by the Czech Ministry of Education (grants ESFRI RECETOX RI LM2018121, ESFRI ELIXIR CZ LM2018131, TEAMING CZ CZ.02.1.01/0.0/0.0/17_043/0009632, NPO Neuro LX22NPO5107), the European Regional Development Fund under the project IMPACT (reg. no. CZ.02.1.01/0.0/0.0/15 003/0000468), and the European Union (SinFonia 814418 and TEAMING 857560). The computational resources were supplied by the project ""e-Infrastruktura CZ"" (e-INFRA LM2018140) provided within the program Projects of Large Research, Development and Innovations Infrastructures. Petr Kouba is a holder of the Brno Ph.D. Talent scholarship funded by the Brno City Municipality and the JCMM.",True,False,False acknowledgement,10.21203/rs.3.rs-2442422/v1,doi10.21203/rs.3.rs-2442422/v1,The research conducted to support the development of the policy brief was part funded by Public Health England through the British Association of Prosthetists and Orthotists (BAPO) [Ref: 6719098]. The policy brief development was supported by Policy Impact Acceleration funding from Staffordshire University.,True,False,False acknowledgement,10.48550/arxiv.1606.05512,doi10.48550/arxiv.1606.05512,"*O. Glorieux is supported by CNPq grant 16088/2015-1 †D. Monclair is supported by National Research Fund, Luxembourg",True,False,False acknowledgement,10.1101/2020.02.26.966093,doi10.1101/2020.02.26.966093,University at Buffalo. This project was supported by grants from the BrightFocus Foundation (G2016024) and the National Eye Institute of the National Institutes of Health (R01EY020545 and R01EY029705) to X.M. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.,True,False,False acknowledgement,10.48550/arxiv.2310.05146,doi10.48550/arxiv.2310.05146,"This research is supported by the National Research Foundation, Singapore under its AI Singapore Programme (AISG Award No: AISG-GC-2019-002). Any opinions, findings and conclusions or recommendations expressed in this material are those of the author(s) and do not reflect the views of National Research Foundation, Singapore.",True,False,False acknowledgement,10.48550/arxiv.1901.10904,doi10.48550/arxiv.1901.10904,"Acknowledgements. The work was supported by RFBR according to the research project 18-31-20004, by the Presidents Program Support of Young Russian Scientists according to the research project MK-2262.2019.1 and in part by Young Russian Mathematics award.",True,False,False acknowledgement,10.21203/rs.3.rs-2547079/v1,doi10.21203/rs.3.rs-2547079/v1,"This work was supported by the National Research and Development Agency (JST), SPRING (Grant Number JPMJSP2128 to Hiroshi Akiyama) and by the Practical Research Project for Lifestyle-related Diseases including Cardiovascular Diseases and Diabetes Mellitus from the Ministry of Health, Labour, and Welfare (Grant Number 22FA1004 to Motohiko Miyachi). | We would like to express our appreciation to the authors of the studies included in this study and to all individuals involved in the data collection. This work was supported by the National Research and Development Agency (JST), SPRING (Grant Number JPMJSP2128). We would like to thank Editage (www.editage.jp) for English language editing.",True,True,False acknowledgement,10.48550/arxiv.1509.00147,doi10.48550/arxiv.1509.00147,"This work was supported in part by the National Science Foundation through grant DMS-1312377, which is gratefully acknowledged.",True,False,False acknowledgement,10.48550/arxiv.2212.01575,doi10.48550/arxiv.2212.01575,"The work was supported by the Natural Science Foundation of China (Nos. 62072329, and 71278).",True,False,False acknowledgement,10.48550/arxiv.astro-ph/9810408,doi10.48550/arxiv.astro-ph/9810408,I gratefully acknowledge financial support from the organizers of this meeting. I also thank Yannick Mellier for many useful discussions.,True,False,False acknowledgement,10.21203/rs.3.rs-1976603/v1,doi10.21203/rs.3.rs-1976603/v1,"Acknowledgements: This work was supported by the Postgraduate Research and Practice Innovation Program of Jiangsu Province, grant number [SJCX21_0344]; the Science and Technology Plan Program of the Ministry of Housing and Urban-Rural Development of the People's Republic of China, grant number [2019-K-140]; and the Youth Science and Technology Innovation Fund of Nanjing Forestry University, grant number [CX2019031]. | Funding: This work was supported by the Postgraduate Research and Practice Innovation Program of Jiangsu Province, grant number [SJCX21_0344]; the Science and Technology Plan Program of the Ministry of Housing and Urban-Rural Development of the People's Republic of China, grant number [2019-K-140]; and the Youth Science and Technology Innovation Fund of Nanjing Forestry University, grant number [CX2019031].",True,False,False acknowledgement,10.21203/rs.3.rs-46170/v2,doi10.21203/rs.3.rs-46170/v2,"This research is supported by Mahidol University (grant number: A30/5261). The funding body has not participated in the research design, collection, analysis, interpretation of data and writing the manuscript.",True,True,False acknowledgement,10.21203/rs.3.rs-1055810/v1,doi10.21203/rs.3.rs-1055810/v1,"This work was supported by the National Natural Science Foundation of China (81930064, 81874103 to Xipeng Wang).",True,False,False acknowledgement,10.48550/arxiv.2203.02581,doi10.48550/arxiv.2203.02581,"Acknowledgments. The authors would like to thank the Austrian Science Fund (FWF) for the generous support through grants Y1012, I4039 (Fischer, Wohofsky) and P28420 (Koelbing). The second author is also grateful for the support by the ÖAW Doc fellowship.",True,False,False acknowledgement,10.21203/rs.3.rs-3914711/v1,doi10.21203/rs.3.rs-3914711/v1,"This work was carried out with the aid of a grant from the Start-up Research Grant (SRG) (File No. SRG/2021/000422) from the Science and Engineering Research Board (SERB), Govt. of India to KY. The authors express their gratitude to Dr Prakash Gangashetty, the Pigeonpea breeder at ICRISAT, and Dr Janila Pasupuleti, the Groundnut breeder at ICRISAT, for generously supplying the pigeonpea and groundnut seeds required for plant transformation.",True,False,False acknowledgement,10.1101/2023.08.29.555304,doi10.1101/2023.08.29.555304,This work was supported by the « URGENCE COVID-19 » fundraising campaign of Institut Pasteur.,True,False,False acknowledgement,10.48550/arxiv.2012.11150,doi10.48550/arxiv.2012.11150,"Acknowledgements. This work was supported in part by the IBS (IBS-R029-C2) and the Basic Science Research Program through the NRF funded by the Ministry of Science and ICT in Korea (No. NRF-2017R1E1A1A01076400), Institute of Information & communications Technology Planning & Evaluation (IITP) grant (2020-0-00153 and 2016-0-00464), Samsung Electronics, HPC support funded by MSIT & NIPA.",True,False,False acknowledgement,10.48550/arxiv.1103.0412,doi10.48550/arxiv.1103.0412,"*EPFL, Lausanne, Switzerland. We gratefully acknowledge support from the Swiss National Science Foundation (Grant No. 200021-125287/1) and an NSERC Post-Doctoral Fellowship.",True,False,False acknowledgement,10.1101/787374,doi10.1101/787374,"Acknowledgements: We thank many people who contributed to this work. PP Dupont and L Bernatchez generously shared their historical tissue samples and length weight data. JP Coon-Come, D Schecapio, E Coon-Come and D Petawabano were excellent Cree guides. M Rabbitskin, our interpreter, and 17 anonymous Cree fishers and elders shared their knowledge of the species and the lake. R Arax Koumrouyan helped conduct the blast2go analysis. M Yates, E Lawrence, J-M Matte, A Prevost, N Hill, A Harbicht, B Brookes, P Peres-Neto, A Cantin, K Wilson, B Allen, W Larson, Z Feiner and D Isermann contributed critical feedback and discussion throughout the project and/or on drafts of the article. M Dunn facilitated engagement with Niskamoon Corporation. This project was funded by fisheries monitoring grants from Niskamoon Corporation to EB/DJF/PM, and by a Mitacs Elevate Postdoctoral Fellowship to EB.",True,False,False acknowledgement,10.48550/arxiv.1503.00623,doi10.48550/arxiv.1503.00623,We would like to thank the referees for their invaluable comments and suggestions. We are also grateful to Dr. Yunwen Lei for pointing out a bug in the proof of Lemma 5 in an early version of the paper and providing Lemma 6 to us. The work by D. X. Zhou described in this paper is supported by a grant from the Research Grants Council of Hong Kong [Project No. CityU 105011].,True,False,False acknowledgement,10.1101/2022.05.02.490262,doi10.1101/2022.05.02.490262,This study was funded by JSPS KAKENHI (JP17H06478) to A.S.,True,False,False acknowledgement,10.1101/2022.12.15.22283335,doi10.1101/2022.12.15.22283335,The work was supported by the National Key R&D Program of China (Grant No.2021YFC0863400).,True,False,False acknowledgement,10.48550/arxiv.1701.07498,doi10.48550/arxiv.1701.07498,"This work was partially supported by NSERC Canada, Brain Canada, NSF China and CSC China. | W.L. Scholarship was Council supported (Grant by No. K. C. 201408330402), Wong Magna Found and the in Ningbo Ningbo Natural University, Science the China Foundation (2016A610078). T.L. was supported by Brain Canada and NSF China (Grant Nos. 61221063 and 71371129). R.G. was supported by NSERC Canada. G.L. was supported by NSERC Canada and NSF China (Grant No. 61672323).",True,False,False acknowledgement,10.48550/arxiv.1910.07626,doi10.48550/arxiv.1910.07626,"*This research is partially supported by NSF grants DMS-1204840, DMS-1308340, DMS-1612483, DMS-1855568, UW-RRF grant A112251, EPSRC grant EP/K029797/1.",True,True,False acknowledgement,10.26434/chemrxiv.14130095.v1,doi10.26434/chemrxiv.14130095.v1,"This work was supported by the National Key Research and Development Program of China (2017YFA0207500), National Natural Science Foundation of China (22022507, 51973111), Shanghai Science and Technology Committee (17ZR1447300), Beijing National Laboratory for Molecular Sciences (BNLMS202004) and China Postdoctoral Science Foundation (2020M681279). We acknowledge the single-crystal XRD analysis support by Dr. Lingling Li from the Instrumental Analysis Center of Shanghai Jiao Tong University.",True,False,False acknowledgement,10.1101/2020.03.24.005983,doi10.1101/2020.03.24.005983,"Supported by grants from Centro de Investigación Biomédica en Red (CIBER) and Instituto de Salud Carlos III (PI20/01360, Co-funded by European Regional Development Fund/European Social Fund). L.A.R. is the recipient of a grant from Instituto de Salud Carlos III (CM16/00128). C.H.F. is the recipient of a grant from Instituto de Salud Carlos III (CD16/00033). Instituto Universitario de Oncología del Principado de Asturias is supported by a grant from Fundación Cajastur-Liberbank. Work in the laboratory of P.J.F.M. was funded by the IMDEA Food Institute, by the AECC and Ramón Areces Foundations and by grants from the Spanish Minisitry of Economy co-funded by the European Regional Development Fund (ERDF) (SAF2017-85766-R and RYC-2017-22335). Work in the laboratory of M.S. was funded by the IRB, by ""La Caixa"" Foundation, and by grants from the Spanish Ministry of Economy co-funded by the European Regional Development Fund (ERDF) (SAF2017-82613-R) and from the European Research Council (ERC- 2014-AdG/669622). J.I.S. is supported by NIH grants HL-147070, HL-71643 and AG-49665.",True,False,False acknowledgement,10.1101/2022.04.14.488428,doi10.1101/2022.04.14.488428,"The authors are thankful to all patients who contributed to this study. We are grateful to Silje Hjellbrekke, Hallvard Zapffe, Mentowa Fürst Bright and Martine Schrøder for technical assistance. We thank the High-Throughput Chemical Biology Screening Platform at Centre for Molecular Medicine Norway (NCMM), University of Oslo, and the High Throughput Biomedicine Unit at Institute for Molecular Medicine Finland (FIMM), University of Finland, for assistance with drug sensitivity screens. This work was supported by the Research Council of Norway under the frames of ERA PerMed (project number 322898) and Digital Life Norway (project number 294916), the Norwegian Cancer Society, the Regional Health Authority for South-Eastern Norway, Stiftelsen Kristian Gerhard Jebsen (Grant 19), Lilly Constance og Karl Ingolf Larssons stiftelse, and the Medical Student Research Program at the University of Oslo. F.B. was supported by Swiss National Science Foundation (SNSF 31003A_163232/1). J.R.B. was supported by NIH R01 CA 213442. T.A. was supported by the Norwegian Cancer Society, Radium Hospital Foundation and the Academy of Finland (grants 313267, 326238, and 344698).",True,False,False acknowledgement,10.48550/arxiv.2101.10803,doi10.48550/arxiv.2101.10803,"Acknowledgements. Authors in Seoul National University are supported by Institute of Information & communications Technology Planning & Evaluation (IITP) grant funded by the Korea government (MSIT) (No.2017-0-01772, Video Turing Test, No.2019-0-01082, SW StarLab).",True,False,False acknowledgement,10.26434/chemrxiv.13578320.v1,doi10.26434/chemrxiv.13578320.v1,"This work was partly supported by JST CREST (No. JPMJCR16Q6), JSPS KAKENHI (No. 19K15291), and Advanced Research Program under the Human Resources Funds of Tokyo (H31-1).",True,False,False acknowledgement,10.21203/rs.3.rs-2448083/v1,doi10.21203/rs.3.rs-2448083/v1,"We thank members of the Holland Lab at Fred Hutchinson Cancer Research Center for discussions. This research was supported by the R35 CA253119-01A1(E.C.H.), NIH U54 CA193461 (E.C.H.), National Institutes of Health R01 CA195718 (E.C.H.), R01 CA100688 (E.C.H.), T32 CA9657-25 (S.S.P.), U54 DK106829 (S.S.P.), R21 CA223531 (S.S.P.); K22 CA258953-01 (SSP) ,Jacobs Foundation Research Fellowship (S.S.P.) and National Science Foundation Graduate Research Fellowship Program DGE-1762114 (N.N.).",True,False,False acknowledgement,10.48550/arxiv.2006.11561,doi10.48550/arxiv.2006.11561,"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement No. 882396), by the Israel Science Foundation (grant number 993/17) and the Yandex Initiative for Machine Learning at Tel Aviv University.",True,False,False acknowledgement,10.1101/2023.08.22.554355,doi10.1101/2023.08.22.554355,"Funding: EKH and JMF were partially supported by NSF DEB # 2120441 during the analysis and preparation of this manuscript. JMF was supported by the Simons Foundation during the final stages of manuscript preparation and submission. MAB and KCW were partially supported by awards from DOE Office of Science, Office of Biological and Environmental Research (BER), grant nos. DE-SC0021350 and DE-SC0023084. A portion of this work was also performed by MAB under a subcontract to KCW from the River Corridor Science Focus Area at Pacific Northwest National Laboratory (PNNL) and funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research, and Environmental System Science (ESS) Program. PNNL is operated by Battelle Memorial Institute for the U.S. Department of Energy under Contract No. DE-AC05-76RL01830. Metagenomic and metatranscriptomic sequencing was performed at the Joint Genome Institute under a Community Science Program (proposal:10.46936/10.25585/60001289, awarded to KCW and MAB) and the University of Colorado Anschutz's Genomics Shared Resource. Work conducted at JGI (https://ror.org/04xm1d337), a Department of Energy Office of Science User Facility, was supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. Work conducted at the Genomics Shared Resource was supported by the Cancer Center Support Grant (P30CA046934).",True,False,False acknowledgement,10.48550/arxiv.2402.11293,doi10.48550/arxiv.2402.11293,"We are grateful to the referee for the useful suggestions to improve the manuscript. This work is supported by the National Key Research and Development Program of China (Grants No. 2021YFA0718503), the NSFC (No. 12133007).",True,False,False acknowledgement,10.48550/arxiv.2108.09688,doi10.48550/arxiv.2108.09688,"The first-listed author gratefully acknowledges funding from L'ORÉAL Austria, in collaboration with the Austrian UNESCO Commission and the Austrian Academy of Sciences - Fellowship Determinacy and Large Cardinals and the support of the FWF Elise Richter grant number V844. This project has received funding from the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 794020 (Project IMIC) of the second-listed author. He also greatefully acknowledges partial support from FWF grant number I4039. This research was funded in whole or in part by EPSRC grant number EP/V009001/1 of the second-listed author. For the purpose of open access, the authors have applied a 'Creative Commons Attribution' (CC BY) public copyright licence to any Author Accepted Manuscript (AAM) version arising from this submission.",True,True,False acknowledgement,10.21203/rs.2.22273/v2,doi10.21203/rs.2.22273/v2,"Funding: This work was supported by operating grants from the Prostate Cancer Canada (C.R.; R.R. and C.A.); the Canadian Institutes of Health Research (CIHR) (C.A., R.R., T.T.), by the Vi Riddell Child Pain program of the Alberta Children's Hospital Research Institute (C.A., T.T.), and by the Natural Sciences and Engineering Research Council of Canada (NSERC; C.A.). C.A. holds a Canada Research Chair in inflammatory Pain (Tier2).",True,False,False acknowledgement,10.21203/rs.3.rs-2901575/v1,doi10.21203/rs.3.rs-2901575/v1,"Funding This work was supported by the Fundação para a Ciência e a Tecnologia (Grant UI/BD/150716/2020). | This work was funded by the Fundação para a Ciência e a Tecnologia (Grant UI/BD/150716/2020).Warm thanks go to it as well as to my supervisor, Prof. Carlos Smaniotto Costa, for his support and insightful comments, and to the research laboratories in education and in urbanism of the CeiED (Interdisciplinary Research Centre on Education and Development) that hosted me at Lusófona university.",True,False,False acknowledgement,10.1101/678557,doi10.1101/678557,The authors thank H. Ren and L. Hilbert for helpful discussions. This research is funded by the National Natural Science Founda- tion of China (NSFC91730101 and 11831015).,True,False,False acknowledgement,10.21203/rs.3.rs-149507/v1,doi10.21203/rs.3.rs-149507/v1,"This work was supported by MOE (Ministry of Education in China) Project of Humanities and Social Sciences [Grant No.18YJAZH118]. The funding agencies had no role in design, analysis, interpretation, or writing of this study.",True,False,False acknowledgement,10.21203/rs.3.rs-29308/v2,doi10.21203/rs.3.rs-29308/v2,This work was supported by a grant from Alpha-1 foundation.,True,False,False acknowledgement,10.48550/arxiv.1301.2346,doi10.48550/arxiv.1301.2346,Acknowledgments. The first author was supported by the FTP7-IDEAS-ERC-StG Grant #200497(BioSMA) and the FP7-IDEAS-ERC-StG Grant #256872 (EntroPhase). He is also grateful for the support received during his visit to the Institute of Mathematics of the Academy of Sciences of the Czech Republic in Prague (GAČR Grant P201/10/2315 and RVO: 67985840).,True,False,False acknowledgement,10.48550/arxiv.1702.08793,doi10.48550/arxiv.1702.08793,The research leading to these results has received funding from the European Research Council under the European Union’s Seventh Framework Programme (FP7/2007-2013) / ERC grant agreement n◦ 291053.,True,False,False acknowledgement,10.48550/arxiv.2312.12846,doi10.48550/arxiv.2312.12846,∗ RD was partially supported by the National Natural Science Foundation of China (No. 12201076) and the China Postdoctoral Science Foundation (No. 2023M732180); CL was partially supported by the National Natural Science Foundation of China (No. 12271339).,True,False,False acknowledgement,10.48550/arxiv.2011.06350,doi10.48550/arxiv.2011.06350,"We are grateful to British Telecommunications PLC who are supporting the PhD research of the first author in the UK EPSRC CASE scheme, giving invaluable guidance on the needs and possibilities of intelligent security tools and their evaluation. Part of this paper draws on the 2019 MSc dissertation of the second author. Nikola Pavlov helped with some of the earlier implementation. The third author was supported by The Alan Turing Institute under the EPSRC grant EP/N510129/1 and the Office of Naval Research ONR NICOP award N62909-17-1-2065.",True,False,False acknowledgement,10.22541/essoar.170365238.84721935/v1,doi10.22541/essoar.170365238.84721935/v1,"The analysis described in this paper was supported by the Ministry of Science and Technology (MOST), Taiwan, under grant numbers 112-2811-M-845-001 and 111-2111-M-845-001. We are grateful to Professor Tim Li for his valuable comments. We also wish to express our gratitude to Mr. HC Liang for his assistance in downloading the model outputs used. This manuscript was edited by Wallace Academic Editing.",True,False,False acknowledgement,10.1101/2022.07.12.499779,doi10.1101/2022.07.12.499779,"Acknowledgements: We are grateful to Leonard White, Ph.D. in the Duke Department of Neurobiology and Robert W. Williams, Ph.D. Univ of Tennessee Health Science Center Chair of Genetics for helpful guidance in neuroanatomy. We thank Tatiana Johnson for technical assistance in preparing the manuscript. This work was supported by National Institute of Aging R01AG070913 (to GAJ and RWW)",True,False,False acknowledgement,10.48550/arxiv.1909.05126,doi10.48550/arxiv.1909.05126,"A.R., F.P. and R.K. acknowledge funding by the Volkswagen Foundation. N.P., H.L., and B.F. acknowledge funding by the Deutsche Forschungsgemeinschaft (DFG). M.G., F.H., M.M.K., B.F., U.L., F.P. and R.K. acknowledge support by the Helmholtz Society through the program, Science and Technology of Nanosystems (STN), and by the Karlsruhe Nano Micro Facility (KNMF). R.K. acknowledges support by Lukas Novotny for simulating dipole emission, Achim Hartschuh for insights into SPP modes, and Yoshikazu Homma for valuable information about environmental effects on carbon nanotubes.",True,False,False acknowledgement,10.1101/2021.06.25.449907,doi10.1101/2021.06.25.449907,"E.H. is thankful to have received graduate scholarships from the Canadian Institutes of Health Research and the Natural Sciences and Engineering Research Council of Canada. This work was supported by grants from the Canadian Institutes of Health Research, the Natural Sciences and Engineering Research Council of Canada, the Canada Foundation for Innovation, Brain Canada (Canadian Neurophotonic Platform), and the Krembil Foundation.",True,False,False acknowledgement,10.48550/arxiv.1803.10058,doi10.48550/arxiv.1803.10058,"This research was undertaken, in part, thanks to funding from the Canada Research Chairs program, the NSERC Discovery Grant program and the LeverageR&D program of the Research and Development Corporation of Newfoundland and Labrador. FV would like to thank Memorial University of Newfoundland, where this research was initiated, for the hospitality during his stay.",True,False,True acknowledgement,10.48550/arxiv.1708.00909,doi10.48550/arxiv.1708.00909,"We would like to thank Pavan Ramkumar for help with code development. For funding, JG was supported by NIH F31 EY025532 and NIH T32 HD057845, NSF NeuroNex Award DBI-1707398, and the Gatsby Charitable Foundation. AB was supported by NIH MH103910. MP was supported by NIH F31 NS092356 and NIH T32 HD07418. RC was supported by NIH R01 NS095251 and DGE-1324585. LM was supported by NIH R01 NS074044 and NIH R01 NS095251. KK was supported by NIH R01 NS074044, NIH R01 NS063399 and NIH R01 EY021579.",True,True,False acknowledgement,10.21203/rs.3.rs-109185/v1,doi10.21203/rs.3.rs-109185/v1,"This work was supported by the grants from the Science and Technological Commission of Shanghai Municipality (No. 20Y11906400), and the Child and Adolescent Mental Health in The key discipline Construction Project Mental Health and Psychiatry Three Years' Action of Shanghai Public Health System Construction Project (No. GWV-10.1-XK19)",True,False,False acknowledgement,10.48550/arxiv.1704.02551,doi10.48550/arxiv.1704.02551,This work was supported by the NSFC under Grant No.11571346 and the Youth Innovation Promotion Association CAS.,True,False,False acknowledgement,10.1101/2023.05.22.541760,doi10.1101/2023.05.22.541760,"This work was supported by NIH grants U41 HG002273 (GO Consortium), U24 HG012198 (Reactome), U24 HG002223 (WormBase), U41 HG000330 (The Mouse Genome Database), and U24 HG011851 (Pathways2GO).",True,True,False acknowledgement,10.21203/rs.3.rs-97449/v1,doi10.21203/rs.3.rs-97449/v1,"This study was funded in part by a Canadian Institutes of Health Research (CIHR) Best and Wise Practices Grant (grant # 410011045). The authors acknowledge financial support from CIHR. The funder was not involved in study design, collection, analysis and interpretation of data or in writing the manuscript.",True,True,False acknowledgement,10.21203/rs.2.20132/v4,doi10.21203/rs.2.20132/v4,"This work was supported by Humanities and Social Science Fund of Ministry of Education of China (Grant No: 71673311). The funding body had no role in study, data collection, analysis, interpretation of data and in writing the manuscript.",True,True,False acknowledgement,10.1101/2022.03.04.22271918,doi10.1101/2022.03.04.22271918,"This research was supported in part by grants from the US National Library of Medicine (R01LM012837), the US National Cancer Institute (R01CA249758), and the US National Institute of General Medical Sciences (P20GM104416).",True,False,False acknowledgement,10.48550/arxiv.1804.00722,doi10.48550/arxiv.1804.00722,"This work was supported in part by Software R&D Center, Samsung Electronics Co., Ltd., Kwanjeong Educational Foundation Scholarship, Sloan Research Fellowship, and DARPA Explainable AI (XAI) program #313498. We also thank Zeynep Akata, Yongqin Xian, Junhyuk Oh, Lajanugen Logeswaran, Sungryull Sohn, Jongwook Choi, and Yijie Guo for helpful discussions.",True,False,True acknowledgement,10.1101/2022.03.29.486102,doi10.1101/2022.03.29.486102,"Y.L. is supported by the startup grant and Center for Pediatric Genomics award from Cincinnati Children's Hospital Medical Center. | The author thanks the input from Drs. Guoqiang Li and Bing Ren from Ludwig Institute for Cancer Research and University of California at San Diego, Drs. Matthew T. Weirauch and Raphael Kopan from Cincinnati Children's Hospital Medical Center. This work was supported by the computational resources from the Biomedical Informatics (BMI) high-performance computing cluster in CCHMC. This work also used the Extreme Science and Engineering Discovery Environment (XSEDE), which is supported by the National Science Foundation grant number ACI-1548562. This work used the XSEDE at the Pittsburgh Supercomputing Center (PSC) through allocation MCB190124P and MCB190006P.",True,False,False acknowledgement,10.1101/457903,doi10.1101/457903,"M.R.A. and T.V. gratefully acknowledge funding from the Villum Foundation, Grant VKR023437. The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.",True,False,False acknowledgement,10.1101/2022.06.23.497286,doi10.1101/2022.06.23.497286,The work was supported by the National Natural Science Foundation of China (32173001).,True,False,False acknowledgement,10.48550/arxiv.1107.5612,doi10.48550/arxiv.1107.5612,D. Mantzavinos was supported by an EPSRC Doctoral Training Grant.,True,False,False acknowledgement,10.1101/2021.11.12.468362,doi10.1101/2021.11.12.468362,"The study of tapir movement ecology has been an important component of the long-term activities of the Lowland Tapir Conservation Initiative (LTCI) – Instituto de Pesquisas Ecológicas (IPÊ) in Brazil. The LTCI has the institutional support from the International Union for Conservation of Nature (IUCN) Species Survival Commission (SSC) Tapir Specialist Group (TSG), Association of Zoos and Aquariums (AZA) Tapir Taxon Advisory Group (TAG), and European Association of Zoos and Aquariums (EAZA) Tapir Taxon Advisory Group (TAG). LTCI's financial support comes from national and international agencies, including zoological institutions, foundations, private businesses, and private individuals. MJN was supported by an NSERC Discovery Grant RGPIN-2021-02758. This work was partially funded by the Center of Advanced Systems Understanding (CASUS) which is financed by Germany’s Federal Ministry of Education and Research (BMBF) and the Saxon Ministry for Science, Culture and Tourism (SMWK) with tax funds on the basis of the budget approved by the Saxon State Parliament. CHF and JMC were supported by NSF | IIBR 1915347. EPM would like to thank the Smithsonian Conservation Biology Institute (SCBI) for hosting her for a 2-month research visit for initial data processing and analysis.",True,True,False acknowledgement,10.1101/2024.04.08.588584,doi10.1101/2024.04.08.588584,"The authors thank Chandra Nath Roy, and Ella Begovic for technical assistance. This work was supported by National Institutes of Health (NIH) grants U54 AI170791 (A.N.E., S.C.W., and Z.A.), R01 AI052014 (A.N.E.), and T32 AI049820 (Z.I.) and the Gilead Sciences Research Scholars Award (M.K.).",True,False,False acknowledgement,10.48550/arxiv.1404.4553,doi10.48550/arxiv.1404.4553,Acknowledgements We thank the three anonymous reviewers for their critical comments. This work is partially supported by a grant (ref. no. ITS/073/12) from the Innovation Technology Fund in Hong Kong.,True,False,False acknowledgement,10.48550/arxiv.1009.0781,doi10.48550/arxiv.1009.0781,*Supported by NSF and NSA.,True,False,False acknowledgement,10.31234/osf.io/dmhk2,doi10.31234/osf.io/dmhk2,We wish to thank the hundreds of researchers and thousands of families who contributed to the success of ManyBabies 1. This work was supported by grants from the Natural Sciences and Engineering Research Council of Canada (2018-04390) and the Concordia Research Chairs program to KBH; the Eunice Kennedy Shriver National Institute of Child Health and Human Development (1R01HD095912-01A1) to CLW and KBH; the National Science Foundation Graduate Research Fellowship Program (DGE-1256259) to MZ; the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 798658 to LL.,True,False,False acknowledgement,10.48550/arxiv.1710.02399,doi10.48550/arxiv.1710.02399,This project has received funding from the European Union’s Horizon 2020 research and innovation program under grant agreement No 736937. This work was supported by the Ministry of Education and Science of the Russian Federation (Zadanie No. 3.2465.2017/4.6). The authors acknowledge Sim4Life by ZMT software (www.zurichmedtech.com).,True,False,True acknowledgement,10.1101/2021.09.16.460706,doi10.1101/2021.09.16.460706,Research reported in this publication was supported by the National Human Genome Research Institute of the National Institutes of Health under Award Number U24HG001315. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.,True,False,False acknowledgement,10.1101/2021.11.22.469523,doi10.1101/2021.11.22.469523,"This work was supported by the Mayo Foundation, the Walter and Leonore Annenberg Foundation, and NIH grant R01-HL62150 to AHL.",True,False,False acknowledgement,10.21203/rs.3.rs-2884693/v1,doi10.21203/rs.3.rs-2884693/v1,"Funding This work was supported by National Key R&D Program of China (grant numbers 2022YFB3605402, 2022YFB3604301, 2022YFB3605200), the National Natural Science Foundation of China (grant numbers 12274360), the Suzhou Science and Technology Plan Project (grant number SGC2021081)",True,False,False acknowledgement,10.48550/arxiv.2409.14870,doi10.48550/arxiv.2409.14870,"M. Oren, V. Paslev, and W. Huleihel are with the Department of Electrical Engineering-Systems at Tel Aviv University, Tel Aviv 6997801, Israel (e-mails: orenmor@mail.tau.ac.il, veredpaslev@mail.tau.ac.il, wasimh@tauex.tau.ac.il). This work is supported by the ISRAEL SCIENCE FOUNDATION (grant No. 1734/21).",True,False,False acknowledgement,10.48550/arxiv.1507.03439,doi10.48550/arxiv.1507.03439,"* Supported by the Emmy Noether-program of the German Research Foundation (DFG), KR 4286/1, and ERC Starting Grant 306465 (BeyondWorstCase).",True,False,False acknowledgement,10.48550/arxiv.1709.00683,doi10.48550/arxiv.1709.00683,This research was carried out with the financial support of the Russian Foundation for Basic Research (grant no. 17-01-00649).,True,False,False acknowledgement,10.1101/2021.11.24.21266805,doi10.1101/2021.11.24.21266805,"This work was supported by project No. 32030 awarded to M.F., co-financed by COMPETE 2020, Portugal 2020 and the EU through the ERDF, and by FCT (PTDC/BIA-EVL/32030/2017) through national funds, and by the European Research Council (ERC-617457-PHYLOCANCER awarded to D.P.) and Spanish Ministry of Science, Innovation, and Universities - MCIU (PID2019-106247GB-I00 awarded to D.P.). J.M.C.-T. is supported by grant no. ISCIII-PI19/01316 from Instituto de Salud Carlos III, State Research Agency and Ministry of Science and Innovation (Spain), with the participation of the European FEDER fund. We want to thank Sara Rocha for her helpful comments on this work.",True,False,False acknowledgement,10.1101/831008,doi10.1101/831008,"We are grateful to Bill Anderson for expert microscopy assistance. The research was supported by NIH grant UM1AI100663 (ABW and DRB), UM1AI144462 (ABW and DRB) and P01 AI110657 (ABW and RWS), the Bill and Melinda Gates Foundation grants OPP1115782 (ABW) and OPP1132237 (RWS), amfAR grant 109514-61-RKVA (MJG). RWS is a recipient of a Vici grant from the Netherlands Organization for Scientific Research (NWO). C.A.C. was supported by NIH F31 Ruth L. Kirschstein Predoctoral Award Al131873 and by the Achievement Rewards College Scientists Foundation.",True,False,False acknowledgement,10.21203/rs.3.rs-2261460/v1,doi10.21203/rs.3.rs-2261460/v1,"This work was supported by the National Key Research and Development Program of China (Grant 2019YFA0904800), the National Natural Science Foundation of China (Grants 81872800 and 82173746), and the 111 Project (Grant BP0719034).",True,False,False acknowledgement,10.1101/495663,doi10.1101/495663,Funding: No funding was received. | No funding was received.,True,False,False acknowledgement,10.1101/2024.03.19.585716,doi10.1101/2024.03.19.585716,"My utmost gratitude is extended to Bin Shao for preprinting the article upon which this work is based and for open-sourcing the sequence generation model. I thank Vijay Narayan for assistance with the sequence processing scripts and acknowledge Steve Royle, Ricardo Henrique, and Theo Sanderson for this preprint template (available at: https://github.com/quantixed/manuscript-templates). ChatGPT assisted with code generation and debugging. Portions of this work were supported by internal research funding provided by the the Johns Hopkins University Applied Physics Laboratory.",True,False,True acknowledgement,10.46855/energy-proceedings-10001,doi10.46855/energy-proceedings-10001,This work is financially supported by the Natural Science Foundation of Zhejiang Province (No. LZ20E060001) and the National Natural Science Foundation of China (No. 52176023).,True,False,False acknowledgement,10.48550/arxiv.2012.10081,doi10.48550/arxiv.2012.10081,"M. F. Ezerman, S. Ling, and B. Özkaya are supported by Nanyang Technological University Research Grant No. 04INS000047C230GRT01. | J. M. Lampos is supported by DOST-ASTHRDP Dissertation Grant and CHED K-12 Transition Program Scholarship for Graduate Studies Abroad. | J. Tharnnukhroh's scholarship is from the Development and Promotion of Science and Technology (DPST) talent project of Thailand.",True,False,False acknowledgement,10.48550/arxiv.1607.07346,doi10.48550/arxiv.1607.07346,"Funding: This work was supported by the US DOD, ARO grant W911NF-14-1-0359 under subcontract C00045065-4.",True,False,False acknowledgement,10.48550/arxiv.2212.12968,doi10.48550/arxiv.2212.12968,"Funding. French Industry Ministry (Nano2022 project under IPCEI program); Agence Nationale de la Recherche (ANR-MIRSPEC-17- CE09-0041); European Union's Horizon Europe (Marie Sklodowska-Curie grant agreement N° 101062518) The fabrication of the device was performed at the Plateforme de Micro-NanoTechnologie/C2N, which is partially funded by the Conseil General de l'Essonne. This work was partly supported by the French RENATECH network.",True,False,False acknowledgement,10.21203/rs.3.rs-19866/v1,doi10.21203/rs.3.rs-19866/v1,"This research was supported by the 2018 National Key Research and Development Program ""Modernization Research of Traditional Chinese Medicine""(2018YFC1707405) and National Natural Science Foundation of China (81273946, 81473463, 81774289).",True,False,False acknowledgement,10.26434/chemrxiv.12698462.v1,doi10.26434/chemrxiv.12698462.v1,We thank the New Jersey Space Grant Consortium (FMR) and Montclair State University for financial support of this work.,True,False,False acknowledgement,10.21203/rs.3.rs-15659/v1,doi10.21203/rs.3.rs-15659/v1,"Funding: This manuscript presents independent research funded by the National Institute for Health Research (NIHR; RP-PG-1210-12016). The views expressed are those of the authors, not those of the UK National Health Service, NIHR or Department of Health. MGF is part funded by NIHR Collaboration for Leadership in Applied Health Research and Care North West Coast (NIHR CLAHRC NWC). | Acknowledgements: Participants for their help. Research teams from North West Coast and Clinical Eye Research Centre who helped to identify participants. Our PPI group contributed to the research questions and topic guides, informed analyses and further exploration and one member joined the authorship. Professor Mark Gabbay is funded by the National Institute for Health Research (NIHR) Collaboration for Leadership in Applied Health Research and Care North West Coast (CLAHRC NWC) . The views expressed are those of the author(s) and not necessarily those of the NIHR or the Department of Health and Social Care ISDR study group: Deborah M Broadbent (Trial PI), Christopher P Cheyne, Mark Gabbay, Marta García-Fiñana, Simon P Harding (Study Group Chair), Marilyn James, James G Lathe, Tracy Moitt, John R Roberts, Irene M Stratton, Jiten P Vora, Amu Wang. Collaborators: ISDR investigators: Anthony C Fisher, Paula Byrne, Daniel Seddon, Paula Williamson: ISDR Research staff: Duncan Appelbe, Ayesh Alshukri, Darsy Darssan, Antonio Eleuteri, Christopher Grierson, Lola Howard, Susan U Howlin, Mehrdad Mobayen-Rahni, Andy Ovens, Christopher J Sampson, Kate Silvera, David Szmyt, Clare Thetford, Pilar Vazquez-Arango, Abigail E Williams; Patient and Public Involvement Group: John Collins, John Kelly, Peter Lees, Sandra Lees, Emily Doncaster, Betty Williams; Programme and Independent Data Safety Committees: Helen Cooper, Vineeth Kumar, Gideon Smith, Chris Rogers, Alison Rowlands, Julia West, Naveed Younis, Nathalie Massat, Catey Bunce; Liverpool Diabetic Eye Screening Programme: Ticiana Criddle, Stephanie Perrett: Liverpool Clinical Commissioning Group: Lisa Jones.",True,False,False acknowledgement,10.21203/rs.3.rs-703630/v1,doi10.21203/rs.3.rs-703630/v1,"This work was supported by National Research Foundation of Korea (NRF) grants funded by the Korean government (No. 2019R1A2C208608012, 2018R1A5A1024340, and GIST Research Institute (GRI) grant funded by GIST in 2021.",True,False,False acknowledgement,10.1002/essoar.10512297.1,doi10.1002/essoar.10512297.1,The authors gratefully acknowledge funding by a grant from the VILLUM Foundation (grant number: 13168) and the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (grant number: 771859). The authors acknowledge the Danish Climate Computing Center (DC3) and Roman Nuterman for technical support. The PyCLES code used for the cold pool simulations is accessible at this site (https://github.com/pressel/pycles).,True,False,True acknowledgement,10.21203/rs.3.rs-5195664/v1,doi10.21203/rs.3.rs-5195664/v1,This work was supported by Research Grants Council of Hong Kong China [HKU 17123819 General Research Fund (GRF) to JZ].,True,False,False acknowledgement,10.1101/2024.08.28.610063,doi10.1101/2024.08.28.610063,This study has been supported by Academy of Finland (grant no. 332920 to O.M. and 333291 and 358425 to L.H.) and Sigrid Juselius Foundation (T.R.).,True,False,False acknowledgement,10.48550/arxiv.2309.03252,doi10.48550/arxiv.2309.03252,"GW and SBS were supported in this work by NSF award grant #1815664. We thank Amy Reines for the discussions on multi-wavelength analyses to determine the origin of radio emission and Julie Comerford for recommendation of the OSSY catalog to perform our optical spectral analysis. The National Radio Astronomy Observatory is a facility of the National Science Foundation operated under cooperative agreement by Associated Universities, Inc. The NANOGrav collaboration, which funded some components associated with this research, receives support from National Science Foundation (NSF) Physics Frontiers Center award #1430284 and #2020265. This research has made use of NASA's Astrophysics Data System Bibliographic Services.",True,True,False acknowledgement,10.48550/arxiv.2403.13098,doi10.48550/arxiv.2403.13098,"A.K.F. was supported by National Science Foundation grant EF-2222478 and K.E.A. was supported by National Science Foundation grant DEB-2225098. We acknowledge this research was primarily conducted on unceded land of the Cahuilla, Tongva, Luiseño, and Serrano peoples native to Southern California.",True,False,False acknowledgement,10.1101/792390,doi10.1101/792390,These studies were funded by NIH UH2AI122295 (JLF and CMS). CGW was supported by NIH T32AI049820.,True,False,False acknowledgement,10.31234/osf.io/w5h3f,doi10.31234/osf.io/w5h3f,Funding: This article was supported in part by the Swiss National Science Foundation (grant number 100019_185477 awarded to C.S.M.).,True,False,False acknowledgement,10.48550/arxiv.hep-ph/0604197,doi10.48550/arxiv.hep-ph/0604197,"I would like to thank the local organizers for their hospitality and for making the Workshop to be a productive one. I also thank my collaborators in the past years who helped me to discover the beauty in physics of top quark and to invent new ways to study its phenomenology. They are G.L. Kane, G.A. Ladinsky, D.O. Carlson, E. Malkawi, T.M.P. Tait, F. Larios, H.-J. He, L. Diaz-Cruz, S. Mrenna, Q.-H. Cao, K. Tobe, and C.-R. Chen. I apologize that due to the limited space in this write-up, I am not being able to cite all the references in the literature that are relevant to top quark physics, but they can be found collectively in the upcoming TeV4LHC report. This work is supported in part by the U. S. National Science Foundation under award PHY-0244919.",True,False,False acknowledgement,10.2139/ssrn.4603511,doi10.2139/ssrn.4603511,This work was supported by the Biotechnology and Biological Sciences Research Council Institute Strategic Program Grant funding (BBS/E/D/10002071 and BBS/E/D/20002174); SZ was funded by an Enlightenment Scholarship from the University of Edinburgh.,True,False,False acknowledgement,10.1101/206573,doi10.1101/206573,Luke Zappia is supported by an Australian Government Research Training Program (RTP) Scholarship. Alicia Oshlack is supported through a National Health and Medical Research Council Career Development Fellowship APP1126157. MCRI is supported by the Victorian Government’s Operational Infrastructure Support Program.,True,False,False acknowledgement,10.21203/rs.2.21147/v1,doi10.21203/rs.2.21147/v1,"This research was supported by Indian Council of Medical Research, Govt. of India (No.5/4-5/128/Neuro/CAR/2013-NCD-I) and Department of Biotechnology, Govt. of India (BT/PR/4054/Med/30/349/2010).",True,False,False acknowledgement,10.48550/arxiv.math/0212328,doi10.48550/arxiv.math/0212328,Acknowledgements. We would like to thank Richard Stanley for suggesting the problem of enumerating excedances in pattern-avoiding permutations and for helpful conversations. The first author was partially supported by the MAE. The second author was supported by the NSA and the NSF.,True,False,False acknowledgement,10.1101/2020.07.23.217117,doi10.1101/2020.07.23.217117,This work was supported by R01GM105668 and P50HD076210 (Core B) from National Institute of Health and a Cornell Vertebrate Genomics Seed grant to A.G.,True,False,False acknowledgement,10.48550/arxiv.1505.00505,doi10.48550/arxiv.1505.00505,This work is supported by the Russian Science Foundation under grant 14-50-00005.,True,False,False acknowledgement,10.48550/arxiv.2009.07976,doi10.48550/arxiv.2009.07976,"1.4. Acknowledgments. We thank Christin Bibby, Haoyang Guo, James Hotchkiss, Mircea Mustaţă, Will Sawin, John Stembridge, Burt Totaro, and Jesse Wolfson for helpful discussions. Huang was supported by Research Training Grant (RTG): Number Theory and Representation Theory at the University of Michigan while completing this work.",True,False,False acknowledgement,10.1101/2021.09.21.21263916,doi10.1101/2021.09.21.21263916,This work was supported by a research grant from the Canadian Institutes of Health Research (MOP#97931 to J.A.M.). H.-M.C. was recipient of CIHR Fredrick Banting and Charles Best Canada and Alberta Graduate Excellence Scholarships.,True,False,False acknowledgement,10.1101/2022.11.30.518589,doi10.1101/2022.11.30.518589,"This work was supported by the National Institute of Neurological Disorders and Stroke (R01-NS-110865), the Whitehall Foundation, Alfred P. Sloan Foundation, a NARSAD Young Investigator grant, Simons Foundation Pilot Award, Eagle Autism Challenge Pilot Grant, The McCabe Fund Award, The Hartwell Individual Biomedical Research Award to S. C. We thank the members from Chung and Weber labs for helpful discussion.",True,False,False acknowledgement,10.48550/arxiv.1603.07866,doi10.48550/arxiv.1603.07866,Couillet's work is supported by the ANR RMT4GRAPH (ANR-14-CE28-0006). | The work of Couillet and Tiomoko Ali is supported by the ANR RMT4GRAPH Project (ANR-14-CE28-0006).,True,False,False acknowledgement,10.26434/chemrxiv-2023-xswnt-v2,doi10.26434/chemrxiv-2023-xswnt-v2,"National Science Centre of Poland (DEC-2019/34/A/ST4/00372). | Authors are grateful to MAESTRO project financed from the National Science Centre, Poland, on the basis of decision DEC-2019/34/A/ST4/00372. The experimental study was carried out at the Biological and Chemical Research Centre, University of Warsaw, established within the project co-financed by European Union from the European Regional Development Fund under the Operational Programme Innovative Economy, 2007-2013. S. C. The Mississippi Center for Supercomputing Research is thanked for access to computational resources. M. A. C.-T. Thanks Prof. Michael Findlater and Prof. Rebeca Arevalo (University of California, Merced) for helpful discussions about the presented research. R. E. R. L. Is thankful to Prof. Dr. Robert Wolf (Regensburg University) for granting access to his research facilities. Purchase of the SQUID magnetometer was enabled by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation, project number 423442764, INST 186/1329-1 FUGG) and the Niedersächsische Ministerium für Wissenschaft und Kultur (MWK).",True,False,False acknowledgement,10.1101/2022.05.09.491212,doi10.1101/2022.05.09.491212,"This work was supported by NIH grants U54HL127624 (BD2K LINCS Data Coordination and Integration Center, DCIC), U24TR002278 (Illuminating the Druggable Genome Resource Dissemination and Outreach Center, IDG-RDOC), U01LM012630 (BD2K, Enhancing the efficiency and effectiveness of digital curation for biomedical 'big data'), and P30CA240139 (NCI Sylvester Cancer Center Support Grant), and the State of Florida Biomedical Research Program, Bankhead Coley grant 9BC13.",True,True,False acknowledgement,10.21203/rs.3.rs-1183137/v1,doi10.21203/rs.3.rs-1183137/v1,"The research was supported by the National Natural Science Foundation of China (31760350, 31560350, and 71963020), the National Key Research and Development Program of China (2018YFD0301102), the Training Program for Academic and Technical Leaders in Major Discipline in Jiangxi Province (20204BCJL22044), the Natural Science Foundation of Jiangxi Province (20202BABL205020), the Key Research and Development Program of Jiangxi Province (20171ACF60018 and 20192ACB60003), the Modern Agricultural Scientific Research Collaborative Innovation Special Project of Jiangxi Province (JXXTCXBSJJ202010), and the Agriculture Research System of Jiangxi Province (JXARS-18).",True,False,False acknowledgement,10.31219/osf.io/cbr72,doi10.31219/osf.io/cbr72,This work was supported by the Medical Research Council [grant number MC_UU_00004/07].,True,False,False acknowledgement,10.48550/arxiv.2207.09213,doi10.48550/arxiv.2207.09213,This research was partly supported by the grant ANR-18-CE40-0017 of Agence National de la Recherche.,True,False,False acknowledgement,10.1101/428177,doi10.1101/428177,"This work was supported by grants from the Pro Retina Germany Foundation (Pro-Re/Project/Zobor.1-2016) ot NW, BF, SK and DZ and by the Curing Retinal Blindness Foundation and the Candle in the Dark-Childvision Research Fund, managed by the King Baudouin Foundation to FPMC and MIK. We further acknowledge support by the Deutsche Forschungsgemeinschaft and the Open Access Publishing Fund of the University of Tuebingen.",True,False,False acknowledgement,10.48550/arxiv.2311.05387,doi10.48550/arxiv.2311.05387,"This work was supported by the German Research Council (Deutsche Forschungsgemeinschaft, DFG) under contract SFB-1283/2 (2021 - 317210226).",True,False,False acknowledgement,10.1101/2023.10.30.23297790,doi10.1101/2023.10.30.23297790,"This study was supported by National Institutes of Health (NIH) Grants U54CA268084, R01CA228272, R01CA225002, and NSF Grant EFMA-1830961 with philanthropic support from Rob and Kristin Goldman, David Sachs and the Christina Carinato Charitable Foundation.",True,False,False acknowledgement,10.26434/chemrxiv-2024-mvww4,doi10.26434/chemrxiv-2024-mvww4,"This work was funded by the German Research Foundation (Deutsche Forschungsgemeinschaft, DFG) through grant DFG-502054395 within the priority program SPP 2370. Computing resources have been generously supported by Science Foundation Ireland at Tyndall and through the SFI/HEA-funded Irish Centre for High End Computing (www.ichec.ie). J.L. would acknowledge the support from HPC Vega in Slovenia through EuroHPC JU call project. The XPS device is funded by the German Research Foundation (DFG) through grant INST 184/144-1 FUGG.",True,False,False acknowledgement,10.48550/arxiv.2410.22737,doi10.48550/arxiv.2410.22737,"Acknowledgements. We thank the anonymous referee for their comments, which greatly improved the manuscript. We acknowledge funding from the European Union H2020-MSCA-ITN-2019 under Grant no. 860470 (CHAMELEON). U.G.J. also acknowledges funding from the Novo Nordisk Foundation Interdisciplinary Synergy Programme grant no. NNF19OC0057374.",True,False,False acknowledgement,10.48550/arxiv.2205.07976,doi10.48550/arxiv.2205.07976,"N.K.S, J.P.B., F.W. and D.B. acknowledge support from the Exascale Computing Project (grant 17-SC20-SC), a collaborative effort of the Department of Energy (DOE) Office of Science and the National Nuclear Security Administration. This research used resources of the National Energy Research Scientific Computing Center (NERSC), a U.S. Department of Energy Office of Science User Facility located at Lawrence Berkeley National Laboratory, operated under Contract No. DE-AC02-05CH11231. This research used resources of the Oak Ridge Leadership Computing Facility at the Oak Ridge National Laboratory, which is supported by the Office of Science of the U.S. Department of Energy under Contract No.: DE-AC05-00OR22725.",True,False,False acknowledgement,10.1101/517870,doi10.1101/517870,"This work was supported by an NSERC Discovery Grant (NSERC-RGPIN-2016-04121) and a Seeding Food Innovation grant from George Weston Ltd. awarded to C.H.H. Additional support from a Life Sciences Research Foundation Fellowship from the Simons Foundation awarded to R.A.M., a fellowship from China Postdoctoral Science Foundation awarded to Y.S., a Chinese Graduate Scholarship Council Award to Y.L., and an NSERC CGS-M award to Z. L.",True,False,False acknowledgement,10.21203/rs.3.rs-1122308/v1,doi10.21203/rs.3.rs-1122308/v1,"Acknowledgments We thank the National Institute of Disaster Prevention Science and Technology (NIED) for providing data support for this study. The figures and diagrams in this paper were created using the Python programming language and the GMT (Generic Mapping Tools). The authors are grateful to Zhuoxin Wang for his suggestions during the writing of the paper. This study was financially supported by the Scientific Research Fund of Institute of Engineering Mechanics, China Earthquake Administration (Grant No. 2016A03), National Key Research and Development Program of China (Grant No. 2017YFC1500802), and National Natural Science Foundation of China (Grant No. U2039209, 5150082083). | Funding This research was funded by Scientific Research Fund of Institute of Engineering Mechanics, China Earthquake Administration (Grant No. 2016A03), National Key Research and Development Program of China (Grant No. 2017YFC1500802), and National Natural Science Foundation of China (Grant No. U2039209, 5150082083).",True,True,False acknowledgement,10.1101/2023.03.23.533998,doi10.1101/2023.03.23.533998,"This work was supported by a National Science Foundation Graduate Research Fellowship [2018257700 to D.T.D.] and by the National Institutes of Health [R01AI127652 to K.D.S, R01AI153303 to K.D.S]. Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the National Institute of Allergy and Infectious Diseases or NIH. K.D.S. holds an Investigators in the Pathogenesis of Infectious Disease Award from the Burroughs Wellcome Fund.",True,False,False acknowledgement,10.21203/rs.3.rs-3575070/v1,doi10.21203/rs.3.rs-3575070/v1,"We thank the Ministry of Education of Singapore for the MOE Tier-2 grant (A-8000482-00-00), the National Research Foundation (NRF) of Singapore for the C4T project under CARES (WBS R-279-000-604-592), the National Natural Science Foundation of China (22178265, U21B2096, 21938008), Research Fund for international Young Scientists (22250410262) and Tianjin Science and Technology Bureau Applied Basic Program Surface Project (22JCYBJC01410) for financial support.",True,False,False acknowledgement,10.21203/rs.3.rs-95662/v1,doi10.21203/rs.3.rs-95662/v1,"Acknowledgements We thank Y. Ando, A. V. Balatsky, F. Libisch, S. Rotter, and M. Shiraishi for discussion, J. Baraillon and P. Hofegger for technical assistance during the measurements, and M. Schinnerl and W. Schrenk for assistance in the cleanroom. Part of this work was done in the cleanroom facilities ZMNS of TU Wien. This was been supported by the FWF grant number 29279-N27 and by KAKENHI (18H01148, 17H06138, 18H03683).",True,False,False acknowledgement,10.1101/2021.12.10.472160,doi10.1101/2021.12.10.472160,"This work was supported by the (1) Startup funding for MM though Guangxi University for fieldwork, lab work and student support. (2) National Natural Science Foundation of China (#31860600) to JY for lab and fieldwork. (3) BC, TM and YL",True,False,False acknowledgement,10.1101/2022.12.05.519119,doi10.1101/2022.12.05.519119,"This study has been supported by the National Key R&D Program of China [2020YFB0204803], National Natural Science Foundation of China [62041209, 12126610], Guangdong Key Field R&D Plan [2019B020228001, 2018B010109006], and Guangzhou S&T Research Plan [202007030010, 202002020047].",True,False,False acknowledgement,10.48550/arxiv.2007.04377,doi10.48550/arxiv.2007.04377,Funding The authors gratefully acknowledge their support from the National Science Foundation under awards CCF-1637393 and CCF-1733680 and from the Army Research Office under MURI award #W911NF-19-1-0233.,True,False,False acknowledgement,10.48550/arxiv.2009.12599,doi10.48550/arxiv.2009.12599,"This work is supported by the Shenzhen Institute of Artificial Intelligence and Robotics for Society, and the Presidential Fund from the Chinese University of Hong Kong, Shenzhen.",True,False,False acknowledgement,10.48550/arxiv.2104.10780,doi10.48550/arxiv.2104.10780,We are funded by the Electronic Components and Systems for European Leadership Joint Undertaking grant No 826655 receiving support from the European Union's Horizon 2020 research and innovation programme. Further partial funding is provided by the German Federal Ministry of Education and Research.,True,False,False acknowledgement,10.1101/2021.10.22.465391,doi10.1101/2021.10.22.465391,"●This work was funded by Roche/Groupe Cancérologie Cutanée de la Société Française de Dermatologie, the University of Rennes-1, Fondation ARC, La Ligue contre le cancer (Comités 35 & 86), the Région Nouvelle Aquitaine (Chaire Universitaire Canaux Calciques et Mélanome, A.P) and the French Government (ANR, program #ANR-12-JSV2-0004-001). K.F.S was an ANR postdoctoral fellowship recipient. E.B was supported by the Région Poitou-Charente.",True,False,False acknowledgement,10.31223/osf.io/hc4px,doi10.31223/osf.io/hc4px,"All the numerical simulations presented in this paper were performed using the CIMENT infrastructure (https://ciment.ujf-grenoble.fr), which is supported by the Rhône-Alpes region (GRANT CPER07_13 CIRA: http://www.ci-ra.org). G.W.B. was supported by National Science Foundation grants DGE-1256068, EAR-1049884 and EAR-1447266. Authors declare no conflicts of interest.",True,False,False acknowledgement,10.2139/ssrn.4890879,doi10.2139/ssrn.4890879,"ZHG gratefully acknowledges support from NIH R33 CA263705-01; SG from NIH U24 CA224319, U01 DK124165, and P01 CA196521; and MB from NIH K99 AI163868. Authors gratefully acknowledge valuable feedback from investigators within NIH funded Human Immunology Project Consortium (HIPC) and Clinical Proteomic Tumor Analysis Consortium (CPTAC), with special thanks to Francesca Petralia for kindly sharing the CPTAC pan-cancer immune subtype networks with the study team. | SG reports other research funding from Boehringer-Ingelheim, Bristol-Myers Squibb, Celgene, Genentech, Regeneron, and Takeda, and consulting from Taiho Pharmaceuticals, not related to this study. All other authors declare no competing interests.",True,False,False acknowledgement,10.26434/chemrxiv-2021-pk7m6-v2,doi10.26434/chemrxiv-2021-pk7m6-v2,"This work was supported by the National Natural Science Foundation of China Young Scientist Fund (Grant No. 21603145), the Science and Technology Commission of Shanghai Municipality Foreign Experts Program (Grant No. 21WZ2503600), the NYU-ECNU Center for Computational Chemistry, and start-up funds from NYU Shanghai. We thank Siyao Guo for invaluable assistance with the proof in Appendix A.",True,False,False acknowledgement,10.21203/rs.3.rs-4023085/v1,doi10.21203/rs.3.rs-4023085/v1,"The National Key Research and Development Program of China (2022YFD1801900) & National Natural Science Foundation of China (32272976 & 32302848), Sichuan Provincial Department of Science and Technology international scientific and technological innovation cooperation (2022YFH0026), the earmarked fund for China Agriculture Research System(CARS-42-17), the Program Sichuan Veterinary Medicine and Drug Innovation Group of China Agricultural Research System (SCCXTD-2021-18). | This work was funded by grants from the National Key Research and Development Program of China (2022YFD1801900), National Natural Science Foundation of China (32272976 \& 32302848), Sichuan Provincial Department of Science and Technology international scientific and technological innovation cooperation (2022YFH0026), the earmarked fund for China Agriculture Research System (CARS-42-17), and the Program Sichuan Veterinary Medicine and Drug Innovation Group of China Agricultural Research System (SCCXTD-2021-18). The funding bodies had no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.",True,False,False acknowledgement,10.26434/chemrxiv-2022-j0x08-v2,doi10.26434/chemrxiv-2022-j0x08-v2,"The authors thank the Swiss National Science Foundation (Grant No. 200020_182798) and the Ecole Polytechnique Fédérale de Lausanne for financial support. Dr. Rosario Scopelliti and Dr. Farzaneh Fadaei Tirani (ISIC, EPFL) are acknowledged for the X-ray study.",True,False,False acknowledgement,10.48550/arxiv.2011.11994,doi10.48550/arxiv.2011.11994,"The author gratefully acknowledges financial support of ERC Consolidator Grant 815703 ""STAMFORD: Statistical Methods for High Dimensional Diffusions"".",True,False,False acknowledgement,10.48550/arxiv.2412.12672,doi10.48550/arxiv.2412.12672,"This work was supported by the Hubei Provincial Natural Science Foundation of China No.2022CFA055, the National Natural Science Foundation of China No.62176097, and Interdisciplinary Research Program of HUST No.2024JCYJ034.",True,False,False acknowledgement,10.1101/2022.11.11.516238,doi10.1101/2022.11.11.516238,This research was supported by a National Science Foundation grant (award IOS-1656688) to E.F.B. KBL and GJG were funded in part by a University of Delaware graduate fellowship award and KBL in part by a Chemistry-Biology Interface predoctoral training program grant: 5T32GM008550.,True,False,False acknowledgement,10.1101/499103,doi10.1101/499103,"S.G. was supported through the award of an Alzheimer’s Research UK PhD fellowship. R.H.R. was supported through the award of a Leonard Wolfson Doctoral Training Fellowship in Neurodegeneration. J.H. and M.R. were supported by the UK Medical Research Council (MRC), with J.H. supported by a grant (MR/N026004/) and M.R. through the award of a Tenure-track Clinician Scientist Fellowship (MR/N008324/1). J.H. was also supported by the UK Dementia Research Institute.",True,False,False acknowledgement,10.2139/ssrn.4615137,doi10.2139/ssrn.4615137,The authors would like to thank the Vice-Presidency for Research of the University of Alicante for the financial support of this work (VIG-ROB-050) and the fellowship UAIND21-05C.,True,False,False acknowledgement,10.48550/arxiv.2211.11452,doi10.48550/arxiv.2211.11452,"*This work was partially supported by the Romanian Ministry of Research, Innovation and Digitization, CNCS UEFISCDI, project number PN-III-P1-1.1-TE-2021-1539, within PNCDI III.",True,False,False acknowledgement,10.21203/rs.3.rs-104074/v1,doi10.21203/rs.3.rs-104074/v1,"This study was supported by the National Natural Science Foundation of China (No. 31972524, No. 31530073), the Sichuan Science and Technology Support Program (No. 2016NYZ0050; No. SCCXTD-2020-08), the earmarked fund for China Agriculture Research System (No. CARS-36-05B). the Guizhou Science and Technology Department, China (No. QKHZC20182280; No. QKHZC20192278).",True,False,False acknowledgement,10.31234/osf.io/5j8zt,doi10.31234/osf.io/5j8zt,The research was financially supported by a grant from Heidelberg University and the excellence initiative of the German Research Foundation (DFG).,True,False,False acknowledgement,10.48550/arxiv.1706.01740,doi10.48550/arxiv.1706.01740,This work has been partially funded by the French ANR project Democrat ANR-15-CE38-0008.,True,False,False acknowledgement,10.48550/arxiv.1704.07964,doi10.48550/arxiv.1704.07964,We are grateful to Yeow Meng Chee and Tuvi Etzion for helpful discussions regarding the history and the current state of knowledge about the existence problem for large sets of designs. The research of Shachar Lovett was supported by the National Science Foundation under grant CCF-1614023. The research of Sankeerth Rao and Alexander Vardy was supported by the National Science Foundation under grants CCF- 1405119 and CCF-1719139.,True,False,False acknowledgement,10.1101/2023.08.29.555280,doi10.1101/2023.08.29.555280,"AT is financially supported by the NWO-FAPESP joint grant on healthy ageing, executed by ZonMw (no. 457002002). GEJ is supported by a VENI grant from ZonMw, and AGEM Talent and Development grants. RHH is financially supported by an ERC Starting grant (no. 638290), a VIDI grant from ZonMw (no. 91715305) and by the Velux Stiftung (no. 1063). EGD is supported by a ZonMw travel grant (no. 446001023). MH is supported by a China Scholarship Council 2020 grant. EA is supported by, EU H2020- EpiEpiNet (No 952455).",True,False,False acknowledgement,10.48550/arxiv.2212.07217,doi10.48550/arxiv.2212.07217,"The authors would like to warmly thank the anonymous referee for his/her constructive comments and suggestions which helped to improve the quality of this article. This work was partially supported by the National Natural Science Foundation of China (Grant No. 12231008), and the National Key Research and Development Program of China (Grant No. 2023YFC2206100).",True,False,False acknowledgement,10.1101/808329,doi10.1101/808329,This work was funded by an ERC Consolidator Grant (CellFusion) and a Swiss National Science Foundation Grant (310030B_176396) to SGM.,True,False,False acknowledgement,10.36227/techrxiv.171387736.66738749/v1,doi10.36227/techrxiv.171387736.66738749/v1,"This work was supported by the Commissioned Research through the National Institute of Information and Communications Technology (NICT), Japan, under Grant #JPJ012368C02701.",True,False,False acknowledgement,10.48550/arxiv.2103.01817,doi10.48550/arxiv.2103.01817,"This work was partially supported by the state of North Rhine-Westphalia (Germany) within the project ""bergisch.smart.mobility"". Furthermore, we thank three anonymous reviewers for their valuable comments.",True,False,False acknowledgement,10.21203/rs.3.rs-182126/v1,doi10.21203/rs.3.rs-182126/v1,"X.J.Z, Y.T, M.H.L and Y.F.C are supported by the National Key R&D Program of China (2017YFA0303702, 2018YFA0306200), the National Natural Science Foundation of China (Grant nos. 51902151, 11625418, 11890700 and 51732006) and the Natural Science Foundation of Jiangsu Province (grant no. BK20190284). J.H.J is supported by the National Natural Science Foundation of China (Grant No. 11675116), the Jiangsu distinguished professor funding and a Project Funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD). X.J.Z thanks Xue-Yi Zhu and Zhi-Kang Lin for useful discussions.",True,False,False acknowledgement,10.21203/rs.2.21771/v2,doi10.21203/rs.2.21771/v2,"This work was financially supported by the National Natural Science Foundation of China (41503067, 31672482) and the National Sci-Tech Support Plan (2015BAB01B04).",True,False,False acknowledgement,10.48550/arxiv.1203.2412,doi10.48550/arxiv.1203.2412,The first named author was partially supported by National Science Foundation Grant DMS-1001614.,True,False,False acknowledgement,10.48550/arxiv.2209.08245,doi10.48550/arxiv.2209.08245,"This work is supported by the National Science Fund for Distinguished Young Scholars (No.61925102), the National Natural Science Foundation of China (No.92167202), the National Natural Science Foundation of China (No.62101069), the National Key R&D Program of China (No.2020YFB1805002), and BUPT-CMCC Joint Innovation Center.",True,False,False acknowledgement,10.21203/rs.3.rs-3268380/v1,doi10.21203/rs.3.rs-3268380/v1,"This work was financially supported by Steno Diabetes Centre Aarhus (SDCA), Aarhus University Hospital and Danish Regions and The Danish Health Confederation Funds for Development and Research.",True,False,False acknowledgement,10.1101/2021.01.27.428544,doi10.1101/2021.01.27.428544,TG was supported by the iNEXT project (653706) funded by the Horizon 2020 program of the European Commission. This work was supported by the Medical Research Council UK,True,False,False acknowledgement,10.1101/2022.03.04.22271540,doi10.1101/2022.03.04.22271540,"We gratefully acknowledge the financial support of the Austrian Research Promotion Agency (FFG), Grant No. 889135. The authors report no potential conflict of interest. We also thank Ramona Polster, MSc, for excellent technical assistance, DDI Martin Lamprecht for valuable suggestions and all the kind colleagues from the routine diagnostics team of the Dr. Gernot Walder laboratory under the direction of BSc Viktoria Muehlmann and Mag. Hannes Mahl for great support.",True,False,False acknowledgement,10.21203/rs.2.15488/v2,doi10.21203/rs.2.15488/v2,"This work was supported by the Natural Science Foundation of Jiangsu Province (BK20181345) and the Open Foundation of Jiangsu Key Laboratory of Industrial Biotechnology (KLlB-KF201807). None of the funders had any role in designing and/or conducting of the study; collection,management, analysis and interpretation of the data; and preparation, review or approval of the manuscript.",True,False,False acknowledgement,10.1101/2021.11.29.468282,doi10.1101/2021.11.29.468282,"We thank the Office of Advanced Research Computing (OARC) at Rutgers, The State University of New Jersey, for maintaining and providing access to the Amarel cluster. OWW, EW, SR, AM, and KRHM worked under the NCSU Biochemistry Undergraduate Research and Training Program (BURT-P). EW, SR, AM, and KRHM were partially supported by the T & E Biochemistry Fund. We thank David O. Deppong and Mary M. Dallas for laboratory assistance. We thank Linda Hanley-Bowdoin and Alvin Crespo-Bellido for helpful discussions and comments on the manuscript.",True,False,False acknowledgement,10.48550/arxiv.2002.02596,doi10.48550/arxiv.2002.02596,The work of Xiaowen Gong is supported by his startup fund and Intramural Grants Program 190599 provided by Auburn University.,True,False,False acknowledgement,10.48550/arxiv.2203.12343,doi10.48550/arxiv.2203.12343,"Research supported by National Science Centre (Poland), grant no. 2019/33/B/ST1/02494.",True,False,False acknowledgement,10.1101/2022.04.11.487872,doi10.1101/2022.04.11.487872,"This work was financially supported by the Netherlands Science Foundation (NWO) under the Programme 'Closed Cycles' (Project nr. ALWGK.2016.029) and the Netherlands Ministry of Education, Culture and Science under the Gravitation Grant nr. 024.002.002.",True,False,False acknowledgement,10.1101/2020.02.11.942920,doi10.1101/2020.02.11.942920,"We are grateful to Century Amber Museum for depositing the specimen. We sincerely thank Max Barclay at the Natural History Museum in London for his valuable comments on our article. We would like to express our gratitude to Ms. Melanie Schuchart, Mr. Steve Kerr, Mr. Branco, Kwan and Dr. Margarethe Brummermann for providing us with photos. This project is supported by the National Natural Science Foundation of China (No. 31830084, 31672336), and also supported by the construction funds for ""Double First-Class"" initiative for Nankai University (No.s of 96172158, 96173250 and 91822294).",True,False,False acknowledgement,10.48550/arxiv.cond-mat/9707341,doi10.48550/arxiv.cond-mat/9707341,"We are thankful to M. Fabrizio, D. Abraham and J. Gehring for illuminating discussions and useful remarks. We also sincerely thank the authors of [11] for kindly sending us their QMC data on uniform magnetic susceptibility and Dr. S.J. Qin for the help in making the plot. A.O.G. was supported by the EPSRC of the U.K. and part of this work has been done during his stay at the ICTP, Trieste, Italy. A.A.N. acknowledges the support from ICTP, Trieste, Italy and A. M. T. thanks ICTP for kind hospitality.",True,True,False acknowledgement,10.48550/arxiv.1711.10066,doi10.48550/arxiv.1711.10066,We gratefully acknowledge this work is supported by the Science and Technology Program of Shenzhen of China under Grant Nos. JCYJ20180306124612893. The 5th author also gratefully acknowledges the support from the China Postdoctoral Science Foundation under Grant No. 2017M620322.,True,False,False acknowledgement,10.21203/rs.2.16385/v1,doi10.21203/rs.2.16385/v1,"This work was supported by grants awarded by the German Federal Ministry of Education and Research (BMBF: 01GV0618, 01GV0620). The study was part of the BMBF research program ""Research Networks on Psychotherapy."" The German Federal Ministry of Education and Research was neither involved in the design of the study, the data collection, the data analysis, in the interpretation of data nor in writing the manuscript.",True,True,False acknowledgement,10.48550/arxiv.1606.00514,doi10.48550/arxiv.1606.00514,"This work is supported by the National Basic Research Program of China (973 Program) under Grant No. 2013CB922203, and the NSF of China (Grants No. 11374366 and 11474359). Y. H. thanks to the constructive discussions with Wenbo Chen, Bin Zhang, Wenpu Dong, Jinlei Liu, Lu Liu and Quan Guo.",True,False,False acknowledgement,10.48550/arxiv.1711.05044,doi10.48550/arxiv.1711.05044,This work was supported by the National Natural Science Foundation of China under Grant 61501028 and Grant 61771054.,True,False,False acknowledgement,10.1101/2020.10.15.340570,doi10.1101/2020.10.15.340570,"We thank the Johns Hopkins Neuroscience Research Multiphoton Imaging Core (NS050274) and the Johns Hopkins Integrated Imaging Center (S10OD023548) for excellent microscopy support. We thank the Page lab for assistance identifying the HMG-like motif, the Nathans lab for the OLLAS antibody, and Addgene for TEV protease from the Waugh lab. We thank Deepika Calidas for assistance in strain construction, Baltimore Worm Club and the Seydoux lab for many helpful discussions. This work was supported by the National Institutes of Health (Grant number 5R37HD037047). GS is an investigator of the Howard Hughes Inistitute.",True,False,False acknowledgement,10.21203/rs.3.rs-3558517/v1,doi10.21203/rs.3.rs-3558517/v1,"This work was supported by a DOD Kidney Cancer Research Program Translational Research Partnership Award (KC180135 to S. Akilesh and S. S. Tykodi), a Fred Hutch/University of Washington Cancer Consortium pilot award supported by NCI P30 CA015704 to SA, and the Cancer Therapeutics Endowment. This research was supported by the Shared Resources of the Fred Hutch/University of Washington Cancer Consortium (P30 CA015704) and the high-performance computing team at FHCRC funded by ORIP grant S100D028685.",True,False,False acknowledgement,10.1101/2022.02.07.479152,doi10.1101/2022.02.07.479152,"This research was supported by the Agriculture, Food and Rural Affairs Research Center Support Program of Ministry of Agriculture, Food and Rural Affairs (714001-7); Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (NRF-2018R1A6A3A01011033, NRF-2021R1A6A3A03038622); John Innes Centre, Knowledge Exchange and Commercialisation Innovation Funding (01IF 2020 GL01).",True,False,False acknowledgement,10.21203/rs.2.11811/v1,doi10.21203/rs.2.11811/v1,"The trial design and data collection are funded by 'Beijing Municipal Administration of Hospitals 'Youth Program' (No.QML20160503), 83 Shuangqinglu Rd., Haidian District, Beijing, 100085, China; data analysis and interpretation are funded by the National Natural Science Foundation of China (Grant No.81701038), 83 Shuangqinglu Rd., Haidian District, Beijing, 100085, China; and Beijing Municipal Administration of Hospitals Clinical Medicine Development of Special Funding Support (ZYLX201708), 83 Shuangqinglu Rd., Haidian District, Beijing, 100085, China supports the data collection and manuscript writing.",True,True,False acknowledgement,10.21203/rs.3.rs-1105870/v1,doi10.21203/rs.3.rs-1105870/v1,This work is supported by the National Natural Science Foundation of China (No. 11371326 and No. 11975145).,True,False,False acknowledgement,10.1101/2023.05.30.542870,doi10.1101/2023.05.30.542870,"This work was supported by the National Institutes of Health (T32 AG052363 to M.P.B., S.N.M., & A.D and R00 AG051661 & R01 AG070035 to M.B.S.), the US Department of Veterans Affairs (Pilot Research Funding to M.B.S.), and A COBRE grant (NIH P20 GM139763 for A.P.).",True,False,False acknowledgement,10.26434/chemrxiv.10283678.v1,doi10.26434/chemrxiv.10283678.v1,Financial support was provided by the European Research Council under H2020/ERC Consolidator Grant corr-DFT [Grant No. 648932].,True,False,False acknowledgement,10.48550/arxiv.1207.2566,doi10.48550/arxiv.1207.2566,Acknowledgments. A. Antonioni and M. Tomassini gratefully acknowledge the Swiss National Science Foundation for financial support under contract number 200021-132802/1.,True,False,False acknowledgement,10.26434/chemrxiv-2023-73hdl,doi10.26434/chemrxiv-2023-73hdl,"This work was supported by United States Department of Energy, Office of Science, Basic Energy Sciences, under Award No. DE-SC0018645 for network synthesis and characterization. 400 MHz NMR instrumentation at Miami University is supported through funding from the National Science Foundation under Award No. CHE-1919850.",True,False,False acknowledgement,10.21203/rs.3.rs-4863132/v1,doi10.21203/rs.3.rs-4863132/v1,"This work is supported by the Swedish Research Council (Grant 2019-04193) and the Wallenberg AI, Autonomous Systems and Software Program (WASP) and SciLifeLab and Wallenberg National Program for Data-Driven Life Science (DDLS) (WASPDDLS21-040/KAW 2020.0239).",True,False,True acknowledgement,10.48550/arxiv.hep-ex/9905040,doi10.48550/arxiv.hep-ex/9905040,*Work supported by Department of Energy contract DE-AC03-76SF00515 (SLAC).,True,False,False acknowledgement,10.48550/arxiv.2103.08732,doi10.48550/arxiv.2103.08732,"The authors would like to thank the Research Center in Pure and Applied Mathematics and the School of Mathematics at Universidad de Costa Rica for their support during the preparation of this manuscript. They also thank the Ministry of Health for providing data and valuable information for this study. Thanks to Dr. María Dolores Pérez-Rosales, Representative of the Pan American Health Organization/World Health Organization in Costa Rica for her support and encouragement to pursue this work.",True,False,False acknowledgement,10.48550/arxiv.2312.11127,doi10.48550/arxiv.2312.11127,"This work is supported by the Luxembourg National Research Fund (FNR), grant reference FNR/IPBG19/14016225/INSTRUCT and FNR/C22/IS/17220888/RUTINE. | The successful launch of the OneWeb's LEO satellite, JoeySat, in May 2023, funded by the European Space Agency and UK Space Agency, showcases the incorporation of the flexible software-defined regenerative processor along with multi-spot beam electronically steered phase array antennas.",True,False,True acknowledgement,10.21203/rs.3.rs-2828694/v1,doi10.21203/rs.3.rs-2828694/v1,M.E. Kret was funded by a ERC 2020 (H2020 European Research Council) Program for Research and Innovation Grant (#804582).,True,False,False acknowledgement,10.48550/arxiv.2206.05593,doi10.48550/arxiv.2206.05593,*This study was supported by National Research Foundation of Korea (NRF) grant funded by the Korean government (MSIT) (NRF-2021R1A2C1011804) and by the Swedish Research Council under contract 2021-03720.,True,False,False acknowledgement,10.1101/652065,doi10.1101/652065,"This research was supported by grants from National Natural Science Foundation of China (Grants 31872646 and 31400199) awarded to B. Xue, and the Hong Kong Research Grants Council (Grants 17112616 and 776713M) awarded to R.M.K. Saunders. B. Xue was supported by the China Scholarship Council as a visiting scholar for one year at the University of Florida, Gainesville, FL, USA. We thank Matt Gitzendanner for computational help with HiperGator; Daniel Thomas, Ryan Folk, Chaonan Fu, Lei Yang, Rebecca Stubbs, Haifei Yan, Tingting Duan, Zhonglai Luo, Zhongtao Zhao, Yuan Xu, Andrea Sanchez, Thomas Marcussen, Ranjit Sahoo, Evgeny Mavrodiev, Andres E. Ortiz-Rodriguez, and Joshua P. Scholl for sharing data alignment, scripts, or discussion.",True,True,False acknowledgement,10.48550/arxiv.2109.03548,doi10.48550/arxiv.2109.03548,"The Fermi-LAT Collaboration acknowledges support from NASA and DOE (United States), CEA/Irfu, IN2P3/CNRS, and CNES (France), ASI, INFN, and INAF (Italy), MEXT, KEK, and JAXA (Japan), and the K.A. Wallenberg Foundation, the Swedish Research Council, and the National Space Board (Sweden).",True,False,False acknowledgement,10.48550/arxiv.2411.08637,doi10.48550/arxiv.2411.08637,This research has been supported by the European Regional Development Fund under the grant PK.1.1.02.0008 (DAT-ACROSS).,True,False,False acknowledgement,10.48550/arxiv.2304.08511,doi10.48550/arxiv.2304.08511,"This work is based on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. MM acknowledges support from the National Science Foundation via AAG grant 2205519 and the Wisconsin Alumni Research Foundation via grant MSN251397. ZL and CT acknowledge financial support from NASA via JWST-GO-1671. RB acknowledges support from the ANR L-INTENSE (ANR-20CE92-0015). JB acknowledges financial support from the Fundação para a Ciência e a Tecnologia (FCT) through national funds PTDC/FIS-AST/4862/2020, UIDB/04434/2020, UIDP/04434/2020, and work contract 2020.03379.CEECIND. TH is supported by Leading Initiative for Excellent Young Researchers, MEXT, Japan (HJH02007) and by JSPS KAKENHI Grant Numbers (20K22358 and 22H01258). HI acknowledges support from JSPS KAKENHI Grant Number JP19K23462 and JP21H01129.",True,True,False acknowledgement,10.1101/770859,doi10.1101/770859,"We thank Stephen Elledge and Philip Zegerman for sharing yeast strains; Andrea Giometto, Mayra Garcia and John Koschwanez for assistance in data analysis; Stephen Bell, Michael Desai, Michael Laub, Bodo Stern, Sriram Srikant, Thomas LaBar and Yi Chen for critical reading of the manuscript; Claire Hartman and Zachary Niziolet from the Harvard Bauer Core Facility for technical assistance. Yoav Voichek and Felix Jonas for advice on DNA replication profiling; We thank the members of the Murray and Nelson labs for helpful discussions. This work was supported by NIH grant RO1-GM43987 and by the NSF-Simons Center for Mathematical and Statistical Analysis of Biology at Harvard (#1764269) to AWM. MF gratefully acknowledges fellowship support from the Human Frontiers Science Program (LT000786/2016-L), EMBO (ALTF 485-2015) and AIRC (iCARE 17957).",True,True,False acknowledgement,10.26434/chemrxiv-2021-hbwrb,doi10.26434/chemrxiv-2021-hbwrb,"H. L., V.C., and Q.C. acknowledge financial support from the Irish Research Council (H.L., EPSPD/2015/5; V.C., GOIPD/2016/128; Q.C., GOIPG/2014/874). Q.C. and W.Z acknowledge the Chinese Scholarship Council (agreement no. 201408300003 and 201706220062). J.M.A. acknowledges CNPq for support through Bolsa de Produtividade em Pesquisa No. 313431/2018- 3. Access to and use of the UCD Conway Electron Microscopy Facility is gratefully acknowledged. The authors acknowledge Dr. Sean O'Brien and Dr. Camila Pedroso Silveira.",True,False,False acknowledgement,10.48550/arxiv.1811.07327,doi10.48550/arxiv.1811.07327,"†E ̈otv ̈os University, Budapest, Department of Computer Science, partially supported by a grant (no. K 109240) from the National Development Agency of Hungary, based on a source from the Research and Technology Inno- vation Fund ‡CNRS, G-SCOP, Univ. Grenoble Alpes, partially supported by IDEX-IRS SACRE §Center of Excellence in Supply Chain Innovation and Transportation, Kedge Business School, Talence, sup- ported by Mentor Graphics",True,False,False acknowledgement,10.48550/arxiv.1310.1467,doi10.48550/arxiv.1310.1467,The work of JFL was supported by the European Space Agency under contract number ESA AO-2004-070.,True,False,False acknowledgement,10.48550/arxiv.2401.17879,doi10.48550/arxiv.2401.17879,"Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy - EXC 2092 CASA - 390781972.",True,False,False acknowledgement,10.1101/2024.11.12.623167,doi10.1101/2024.11.12.623167,"This work was granted by the Agence Nationale de Recherche sur le SIDA (ANRS-Maladies infectieuses émergentes) and Sidaction for fundings. L.B, A.B and E.L were supported by ANRS. L.B. and M.P. were supported by Sidaction. G.B. was supported by ANR-20-IDEES- 0002. We thank Remi Villette for his expertise using R, Bernard Maillere and his team for the access to the ELISPOT reader, Anne Lopes, Paul Roginski, for discussions, Frederic Suba and Clemence Richetta for access to the L3 facility of ENS-Paris-Saclay. We thank all participants of the ANRS CODEX cohort and the NIH AIDS Research and Reference Reagent Program for | providing drugs. This work was supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation, WA 4608/1-2, J.S.W.), the Deutsche Forschungsgemeinschaft under Germany's Excellence Strategy (EXC2180 390900677, J.S.W. and H.-G.R.), the German Cancer Consortium (DKTK, H.-G.R. and J.S.W.), the Ernst Jung Prize for Medicine (H.-G.R.), the Landesforschungspreis of Baden-Württemberg (H.-G.R.), the Wilhelm Sander Stiftung (2016.177.3, J.S.W.), the Deutsche Krebshilfe (German Cancer Aid, 70114948, J.S.W.), and the Fortüne Program of the University of Tübingen (2451-0-0 , J.S.W.). The collaboration between Tübingen University and I2BC was supported by the French-German Partnership Hubert Curien Procope 2021 program.",True,False,False acknowledgement,10.48550/arxiv.1602.08614,doi10.48550/arxiv.1602.08614,"This work was supported by the National Science Foundation [DMS-1913039 to L.S., CCF-2203060, CCF-2106834 to G.T.].",True,False,False acknowledgement,10.31234/osf.io/bxjf9,doi10.31234/osf.io/bxjf9,The study was funded by a grant from the Eino Jutikkala Fund to the first author and a grant (no. 298513) from Academy of Finland to the second author.,True,False,False acknowledgement,10.48550/arxiv.2011.14945,doi10.48550/arxiv.2011.14945,"We thank Dmitry Budker for valuable discussions. This work was supported by National Key Research and Development Program of China (Grant No. 2018YFA0306600), National Natural Science Foundation of China (Grants Nos. 11661161018, 11927811), Anhui Initiative in Quantum Information Technologies (Grant No. AHY050000), and USTC Research Funds of the Double First-Class Initiative (Grant No. YD3540002002).",True,False,False acknowledgement,10.1101/2023.08.06.23293729,doi10.1101/2023.08.06.23293729,This project was supported by an Australian Research Council Discovery Project Grant (DP190102020).,True,False,False acknowledgement,10.1101/2023.07.26.550760,doi10.1101/2023.07.26.550760,"We would like to thank the various contributors to the open access databases that our data was downloaded from. HCP data were provided by the Human Connectome Project, WU-Minn Consortium (Principal Investigators: David Van Essen and Kamil Ugurbil; 1U54MH091657) funded by the 16 NIH Institutes and Centers that support the NIH Blueprint for Neuroscience Research; and by the McDonnell Center for Systems Neuroscience at Washington University. Macaque data were provided by the PRIME-DE. Primary support for the work by Michael P. Milham and the INDI team was provided by gifts from Joseph P. Healy to the Child Mind Institute, as well as by the BRAIN Initiative (R01MH111439). MPM is a Randolph Cowen and Phyllis Green Scholar. Primary support for the work by Charles Schroeder is provided by the BRAIN Initiative (R01MH111439) and the Sylvio O. Conte Center ""Neurobiology and Dynamics of Active Sensing"" (P50MH109429). Primary support for the work by Daniel Margulies is provided by the Max Planck Society.",True,True,False acknowledgement,10.48550/arxiv.1409.7097,doi10.48550/arxiv.1409.7097,We thank the Italian Ministry of Foreign Affairs for financial support (Grant No. 00173/2014).,True,False,False acknowledgement,10.1101/2022.04.05.487127,doi10.1101/2022.04.05.487127,"We thank Naomi Leonard for helpful discussions. This study was partially funded by the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement number 647704). AR also acknowledges support from the Belgian F.R.S.-FNRS, of which he is a Chargé de Recherches.",True,False,False acknowledgement,10.36227/techrxiv.24041583.v2,doi10.36227/techrxiv.24041583.v2,"This work was supported in part by National Key R&D Program of China (2021ZD0112001), the National Natural Science Foundation of China under Grant 62071086, Grant 61971095, and Grant 62271119, and Natural Science Foundation of Sichuan Province (2023NSFSC1972). The authors are with the school of Information and Communication Engineering, University of Electronic Science and Technology of China, Chengdu, Sichuan, 611731, China. (e-mail: cyhe@std.uestc.edu.cn)",True,False,False acknowledgement,10.48550/arxiv.2211.08765,doi10.48550/arxiv.2211.08765,"This work is supported by the European Space Agency (ESA), the National Space Agency (CNES), the Directorate General of Armaments (DGA), the National Centre for Scientific Research (CNRS) and the Research National Agency (ANR).",True,False,False acknowledgement,10.1101/2022.08.17.504253,doi10.1101/2022.08.17.504253,K.N.T. would like to acknowledge the Oxford British Heart Foundation Centre of Research Excellence (grant code RE/18/3/34214) for funding this project. L.C.H. would like to acknowledge the British Heart Foundation for funding (grant code FS/17/58/33072). We thank the Oxford Genomics Centre at the Wellcome Trust Centre for Human Genetics (funded by Wellcome Trust grant reference 203141/Z/16/Z with additional support from the NIHR Oxford BRC) for the generation and initial processing of the sequencing data.,True,False,False acknowledgement,10.48550/arxiv.2410.16194,doi10.48550/arxiv.2410.16194,"Support for MIT participation was provided by the US Department of Energy, Fusion Energy Sciences, Award DE-SC0014251. This work has been carried out within the framework of the EUROfusion Consortium, funded by the European Union via the Euratom Research and Training Programme (Grant Agreement No 101052200 — EUROfusion). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Commission. Neither the European Union nor the European Commission can be held responsible for them.",True,False,False acknowledgement,10.48550/arxiv.2403.03233,doi10.48550/arxiv.2403.03233,"T. Butler and T. Roper's work is supported by the National Science Foundation under Grant No. DMS-2208460. T. Butler's work is also supported by NSF IR/D program, while working at National Science Foundation. However, any opinion, finding, and conclusions or recommendations expressed in this material are those of the author and do not necessarily reflect the views of the National Science Foundation.",True,False,False acknowledgement,10.21203/rs.2.24571/v1,doi10.21203/rs.2.24571/v1,This work is supported by the Chinese National Natural Sciences Foundation (No. 81570658).,True,False,False acknowledgement,10.1101/2021.11.22.469564,doi10.1101/2021.11.22.469564,"Acknowledgements: We thank Dr Jenna Gallie for suggestions on experimental procedures and comments, Elke Blohm-Sievers for help with the microarray experiments and Johana Fajardo for sharing her re-analysis data. This research was funded through an ERC advanced grant to D.T. (NewGenes—322564) and institutional funds of the MPG to D.T. D.B. was a member of the IMPRS for Evolutionary Biology.",True,False,False acknowledgement,10.21203/rs.2.23858/v3,doi10.21203/rs.2.23858/v3,"The authors disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: This work was supported by the University Malaya Research Grant [grant number RP048D-17HTM]. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.",True,True,False acknowledgement,10.21203/rs.3.rs-2716372/v1,doi10.21203/rs.3.rs-2716372/v1,"Funding: This work was supported by The Chiang Mai University Research Fund CMU-2566. The funder had no role in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript. The funder had no role in the study design, data collection, data analysis, or the manuscript preparation for publication of the findings.",True,True,False acknowledgement,10.21203/rs.3.rs-4365998/v1,doi10.21203/rs.3.rs-4365998/v1,"This work was supported by the Ministry of Innovation, Science and Technology, Israel and a grant from the Blavatnik Artificial Intelligence and Data Science Fund, Tel Aviv University Center for AI and Data Science (TAD). This project received funding from the European Union under the Horizon Europe program (ERC, BabyMagnet, project no. 101115639). Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them.",True,True,False acknowledgement,10.1101/2023.03.31.535076,doi10.1101/2023.03.31.535076,We gratefully acknowledge the Leibniz Association for funding. Mohammad Abukhalaf was funded by DFG project grant HO 5063/2-1. We express our heartfelt gratitude to Prof. Dr. Tina Romeis for her continued support throughout the last years. We declare no conflict of interest.,True,False,False acknowledgement,10.1101/2020.10.01.322578,doi10.1101/2020.10.01.322578,We would like to thank Clare Stevenson and Julia Mundy for technical assistance and advice and Kelley Gallagher for helpful discussions on the phylogenetic analysis. We thank the JIC Bioimaging facility and staff for technical support. Work in the lab of JRM was supported by the National Institutes of Health grant GM096268. We gratefully acknowledge funding by the Royal Society (URF\R1\180075) and the BBSRC (BB/T015349/1) to SS and for support by the BBSRC Institute Strategic Program grant BB/J004561/1 to the John Innes Centre.,True,False,False acknowledgement,10.48550/arxiv.0705.0260,doi10.48550/arxiv.0705.0260,"We thank F.A. van Broekhuizen and W.A. Schutte for initial work on our photodesorption instrument. Funding was provided by NOVA, the Netherlands Research School for Astronomy, a grant from the European Early Stage Training Network ('EARA' MEST-CT-2004-504604) and a NWO Spinoza grant.",True,False,False acknowledgement,10.21203/rs.3.rs-3144627/v1,doi10.21203/rs.3.rs-3144627/v1,Funding information This work is supported by National Natural Science Foundation of China (Grant Number 51975290).,True,False,False acknowledgement,10.48550/arxiv.1806.06157,doi10.48550/arxiv.1806.06157,"Acknowledgements. This work was funded by grant Deepvision (ANR-15- CE23-0029, STPGP-479356-15), a joint French/Canadian call by ANR \& NSERC.",True,False,False acknowledgement,10.1002/essoar.10508505.1,doi10.1002/essoar.10508505.1,"This work was supported by the ONR GLOBAL grants N62909–14-1-N224/SQU and N62909-21-1-2008, Sultan Qaboos University grants EG/AGR/FISH/14/01 and IG/AGR/FISH/17/01, and UK NERC grants NE/M005801/1 and NE/N012658/1. We are grateful to the UEA Seaglider Facility, Sultan Qaboos University technical staff and Five Oceans Environmental Services consultancy for their technical help with instrument deployments and recoveries. SS is supported by a Wallenberg Academy Fellowship (WAF 2015.0186) and a Swedish Research Council grant (VR 2019-04400).",True,False,False acknowledgement,10.48550/arxiv.1404.3762,doi10.48550/arxiv.1404.3762,"This work was supported by NSF (ECCS-1128297 and DMR-1308436 ). Part of this research was conducted (MP, QL) at the Center for Nanophase Materials Sciences under project # CNMS2011-066, which is sponsored at Oak Ridge National Laboratory by the Scientific User Facilities Division, Office of Basic Energy Sciences, U.S. Department of Energy. NJG, DX, JY and DM were supported by Materials and Engineering Division, Office of Basic Energy Sciences, U.S. Department of Energy.",True,False,False acknowledgement,10.48550/arxiv.1503.08548,doi10.48550/arxiv.1503.08548,"This work was partially supported by the European Commission within the framework of the CONGAS project FP7-ICT-2011-8-317672. Y.Zhang's work was carried out with a financial grant from the Research Fund for Coal and Steel of the European Commission, within the INDUSE-2-SAFETY project (Grant No. RFSR-CT-2014-00025).",True,False,False acknowledgement,10.1101/2024.05.28.596280,doi10.1101/2024.05.28.596280,"This study was supported by funds from the Hartwell Foundation through an Individual Biomedical Research Award to J.S., through an NIH Director's New Innovator Award to J.S., through an W.M. Keck Award to J.S., and through an NIH NIBIB Award to G.M.",True,False,False acknowledgement,10.21203/rs.3.rs-4916383/v1,doi10.21203/rs.3.rs-4916383/v1,P.Y. gratefully acknowledges the financial support from the Science and Technology Commission of Shanghai Municipality (20ZR1436900) and ShanghaiTech start-up funding. X.S. acknowledges the Postdoctoral Science Foundation of China (2021M702188). C.L. acknowledges the NSFC grant 12304230 and Postdoctoral Science Foundation of China (grant GZB20230422). Y.F.J. acknowledges support from the National Program on Key Research Project under Grant No.2022YFA1402703.,True,False,False acknowledgement,10.48550/arxiv.2311.09581,doi10.48550/arxiv.2311.09581,We thank all participants in our human study for their hard work. This work was supported in part by NSF grant DSES 2222762.,True,False,False acknowledgement,10.48550/arxiv.hep-ph/9402355,doi10.48550/arxiv.hep-ph/9402355,"I am grateful to Andy Acker, Gary McGrath, Anjan Joshipura, John Learned, Al Mann, Kenzo Nakamura, Jim Pantaleone, Raju Raghavan and Atsuto Suzuki for many enjoyable discussions, and to the organisers for their magnificent hospitality. This work is supported in part by US DOE under contract DE-AM03-76SF-00325 and the University of Hawaii.",True,False,False acknowledgement,10.48550/arxiv.2405.14181,doi10.48550/arxiv.2405.14181,"TM is grateful to R. Iwazaki for fruitful discussions. This work was supported by JSPS with Grants-in-Aid for Scientific research No. 23KJ0298 (TM), No. 23K17668 (YT and SH), No. 24K00583 (YT), No. 21K03459 (SH), and No. 23H01130 (SH). ST was supported by the W¨urzburg-Dresden Cluster of Excellence ct.qmat, EXC2147, project-id 390858490, the DFG (SFB 1170), and the Bavarian Ministry of Economic Affairs, Regional Development and Energy within the High-Tech Agenda Project “Bausteine f¨ur das Quanten Computing auf Basis topologischer Materialen.”",True,False,False acknowledgement,10.48550/arxiv.2306.11005,doi10.48550/arxiv.2306.11005,"Acknowledgment We thank E. Berg, D. Efetov, A. MacDonald, and A. Young for fruitful discussions. The work by L.L. was supported by the Science and Technology Center for Integrated Quantum Materials, National Science Foundation Grant No. DMR1231319, and Army Research Office Grant No. W911NF-18-1-0116. The work by A.V.C. was supported by U.S. Department of Energy, Office of Science, Basic Energy Sciences, under Award No. DE-SC0014402.",True,False,False acknowledgement,10.48550/arxiv.2004.14491,doi10.48550/arxiv.2004.14491,"The PI's research group (Farid) is partially supported with funding from the Defense Advanced Research Projects Agency (DARPA FA8750-16-C-0166). The views, opinions, and findings expressed are those of the authors and should not be interpreted as representing the official views or policies of the Department of Defense or the U.S. Government. The PI's research group is also partially supported by Facebook. There is no collaboration between Facebook and DARPA. We thank Yipin Zhou for her help in data collection.",True,True,False acknowledgement,10.21203/rs.3.rs-2402852/v1,doi10.21203/rs.3.rs-2402852/v1,"This work was supported by the Coordination for the Improvement of Higher Education Personnel - (CAPES) - Financing Code 001 and the support of the National Council for Scientific and Technological Development - (CNPq), Federal University of Paraíba and the Federal University of Mato Grosso do South, through its Postgraduate Programs in Animal Science. | This work was supported by Coordination for the Improvement of Higher Education Personnel - (CAPES) - Financing Code 001 and the support of the National Council for Scientific and Technological Development - (CNPq).",True,False,False acknowledgement,10.48550/arxiv.1911.08648,doi10.48550/arxiv.1911.08648,We thank Wenjie Zhou for his valuable comments and suggestions. This work is supported by the National Natural Science Foundation of China (61773026) and the Key Project of Natural Science Foundation of China (61936012).,True,False,False acknowledgement,10.1101/2023.02.22.529602,doi10.1101/2023.02.22.529602,"We acknowledge financial support from National Natural Science Foundation of China under Grants No. 12147142, No. 11974292, No. 12174323, and No. 12004317, Fundamental Research Funds for Central Universities of China under Grant No. 20720200072 (RM), and 111 project No. B16029.",True,False,False acknowledgement,10.48550/arxiv.1107.2446,doi10.48550/arxiv.1107.2446,"*This work was supported in part by the U.S. National Science Foundation under Grant CCF-0916568. Part of the work in this paper was presented in a preliminary form at the 45th Conference on Information Science and Systems hosted by The Johns Hopkins University, Baltimore, MD, March 23-25, 2011.",True,False,False acknowledgement,10.1101/382929,doi10.1101/382929,"The authors gratefully acknowledge Mr. Loc Huynh, Yung-hua Wang, and Tony Huynh for technical assistance, and Dr. Sarah Elmes for assistance with FACS. M.J.E. was supported by the 2013 David H. Koch Young Investigator Award from the Prostate Cancer Foundation and the American Cancer Society (130635-RSG-17-005-01-CCE). C.T. was supported by a postdoctoral fellowship from the Department of Defense Prostate Cancer Research Program (PC151060). Research from UCSF reported in this publication was supported in part by the National Cancer Institute of the National Institutes of Health under Award Number P30CA082103. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.",True,False,False acknowledgement,10.48550/arxiv.1004.2420,doi10.48550/arxiv.1004.2420,The work is partially supported by FWF grant No. S09209. | This work has been partially supported by the project “Computational Differential Geometry” (FWF grant No. S09209).,True,False,False acknowledgement,10.21203/rs.3.rs-1522040/v1,doi10.21203/rs.3.rs-1522040/v1,"This work has been funded by the Department of Forestry, Fisheries and the Environment in support of the South African Elephant Research Strategy REF: EDMS 179184.",True,False,False acknowledgement,10.48550/arxiv.2208.11288,doi10.48550/arxiv.2208.11288,Financial support. This work was supported by the Mathematics Programme of the Trond Mohn Foundation.,True,False,False acknowledgement,10.48550/arxiv.2209.04629,doi10.48550/arxiv.2209.04629,"Acknowledgments This work is financially supported by the National Key R&D Program of China, Project Number 2020YFA0712000.",True,False,False acknowledgement,10.1099/acmi.0.000563.v3,doi10.1099/acmi.0.000563.v3,Funding information This work received no specific grant from any funding agency.,True,False,False acknowledgement,10.26434/chemrxiv.12611057.v1,doi10.26434/chemrxiv.12611057.v1,"The authors acknowledge Dr. Sanjai Parikh for the use of his ATR-FTIR, and Ted Diesenroth and Rupa Darji at BASF for valuable discussions. This work was partially supported by BASF (CARA). Scott Strobel was supported the Agriculture and Food Research Initiative grant 2018-67012-28029 from the USDA National Institute of Food and Agriculture.",True,False,False acknowledgement,10.1101/2024.04.12.24305747,doi10.1101/2024.04.12.24305747,"Funding and additional information - We thank the Medical Research Foundation for a Fellowship to T. C. R. M. (MRF-057-0004-RG-MCDO-C0800) and a Versus Arthritis Senior Fellowship (ShS/SRF/22977). H.F.B. was supported by an UCB BIOPHARMA SPRL/BBSRC PhD Studentship (BB/P504725/1). C.J.L. was supported by the EPSRC Centre for Doctoral Training in Emergent Macromolecular Therapies (000033549) and IPSEN Bioinnovation (EP/L015218/1). S.J.P. was supported by the CCP-SAS project, a joint EPSRC (EP/K039121/1) and NSF (CHE-1265821) grant. P.D is supported by an EPSRC Grant (EP/P006485/1). Wellcome Collaborative Award in Science (209250/Z/17/Z) to K.T.",True,True,False acknowledgement,10.26434/chemrxiv-2023-1nh8l,doi10.26434/chemrxiv-2023-1nh8l,"The present work has benefited from the core facilities of Imagerie-Gif, (http://www.i2bc.paris-saclay.fr), member of IBiSA (http://www.ibisa.net), supported by ""France-BioImaging"" (ANR-10-INBS-04-01), and the Labex ""Saclay Plant Science"" (ANR-11-IDEX-0003-02).",True,False,False acknowledgement,10.21203/rs.3.rs-22145/v1,doi10.21203/rs.3.rs-22145/v1,"The authors gratefully acknowledge the financial support of DST, India [No. SR/WOS-A/ET-1017/2014] in carrying out this research work. | This work was supported by DST, India [No. SR/WOS-A/ET-1017/2014].",True,False,False acknowledgement,10.48550/arxiv.q-alg/9503022,doi10.48550/arxiv.q-alg/9503022,"Acknowledgements. It is a pleasure for us to thank P. Deligne, V. Drinfeld, P.Etingof and N.Reshetikhin for the useful discussions on the topic. Y.S. is grateful to the Department of Mathematics of Harvard University, the Institute for Advanced Study and the Max-Planck Institute für Mathematik for the support and hospitality during various stages of this work.",True,False,False acknowledgement,10.48550/arxiv.2504.04151,doi10.48550/arxiv.2504.04151,"This work was supported by the ""R&D Hub Aimed at Ensuring Transparency and Reliability of Generative AI Models"" project of the Ministry of Education, Culture, Sports, Science and Technology, and JST Moonshot R&D Grant Number JPMJMS2011-35 (fundamental research).",True,False,False acknowledgement,10.48550/arxiv.2005.01977,doi10.48550/arxiv.2005.01977,"We thank Mathias Vorreiter Pedersen for his help with the technical aspects of this work at an earlier stage, Alix Trieu and Andrei Sabelfeld for their comments and insights, and the anonymous reviewers for their suggestions for improving the presentation of this paper. This work is supported by the DFF project 6108-00363 from The Danish Council for Independent Research for the Natural Sciences (FNU) and Aarhus University Research Foundation.",True,False,False acknowledgement,10.48550/arxiv.2406.17722,doi10.48550/arxiv.2406.17722,This work is supported by Research Grant S of the Tateishi Science and Technology Foundation.,True,False,False acknowledgement,10.48550/arxiv.2305.03820,doi10.48550/arxiv.2305.03820,"Tyler Hanks was supported by the National Science Foundation Graduate Research Fellowship Program under Grant No. DGE-1842473. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the NSF. Matthew Hale and Baike She were supported by the Air Force Office of Scientific Research (AFOSR) under Grant No. FA9550-23-1-0120. Matthew Klawonn was funded by a SMART SEED grant. James Fairbanks was supported by DARPA under award no. HR00112220038.",True,False,False acknowledgement,10.48550/arxiv.1412.8614,doi10.48550/arxiv.1412.8614,"This work was partly supported by the Polish Science Foundation (NCN), under Maestro grant DEC-2013/10/A/ST2/00106.",True,False,False acknowledgement,10.48550/arxiv.2107.13257,doi10.48550/arxiv.2107.13257,"Acknowledgements This work was partially funded by DFG, German Research Foundation (""WorldKG"", 424985896, DE 2299/2-1), BMBF, Germany (""Simple-ML"", 01IS18054) and BMWi, Germany (""d-E-mand"", 01ME19009B).",True,False,False acknowledgement,10.1101/2023.04.17.537245,doi10.1101/2023.04.17.537245,We would like to thank Xu Wang for critical reading of the manuscript. This work was supported by the Intramural Research Program of the National Institute of Diabetes and Digestive and Kidney Diseases.,True,False,False acknowledgement,10.48550/arxiv.2208.12687,doi10.48550/arxiv.2208.12687,"The third author was supported by the Hungarian National Research, Development and Innovation Office - NKFIH, 124749.",True,False,False acknowledgement,10.48550/arxiv.2311.06833,doi10.48550/arxiv.2311.06833,"*This work is supported by Hainan Provincial Natural Science Foundation of China (Nos. 120RC453, 120MS002) and the National Natural Science Foundation of China (Nos. 11971311, 12026230), the Montenegrin-Chinese Science and Technology Cooperation Project (No.3-12).",True,False,False acknowledgement,10.1101/2020.05.07.081752,doi10.1101/2020.05.07.081752,"Funding was provided by NSF CAREER Award MCB-1149328 and the Allen Discovery Center at Stanford on Systems Modeling of Infection (to K.C.H.), and a Stanford Graduate Fellowship and an NSF Graduate Research Fellowship (to S.C.). M.A.D. and E.L. were supported by the Stanford Bioengineering Research Experience for Undergraduates program. This work was also supported in part by the National Science Foundation under grant PHYS-1066293 and the hospitality of the Aspen Center for Physics.",True,False,False acknowledgement,10.48550/arxiv.1605.08740,doi10.48550/arxiv.1605.08740,"This work was supported by the Jayne Koskinas Ted Giovanis Foundation for Health and Policy (JKTG) [dissertation support grant to ECL]; the National Cancer Institute at the National Institutes of Health [grant number R01CA172805 to ABL]; the Fogarty International Center at the National Institutes of Health; and the Research and Policy for Infectious Disease Dynamics program of the Science and Technology Directorate at the Department of Homeland Security. The opinions, findings, and conclusions or recommendations expressed in this material are those of the author and not necessarily those of JKTG, its directors, officers, or staff.",True,False,False acknowledgement,10.21203/rs.3.rs-1271303/v1,doi10.21203/rs.3.rs-1271303/v1,"This work was supported by The Youth Innovation Team of Shaanxi Universities (21JP070), the National Natural Science Foundation of China (No. 52174199, 51974236), and the Key R&D Program of Shaanxi Province (Grant No. 2021KW-11).",True,False,False acknowledgement,10.48550/arxiv.1401.0855,doi10.48550/arxiv.1401.0855,"J. Xu, Y. Xiao and M. van der Schaar were supported by US NSF grant CNS-1016081. Y. Andreopoulos was partially supported by the UK EPSRC, EP/K033166/1.",True,False,False acknowledgement,10.31223/x5035b,doi10.31223/x5035b,"LMP is funded by NSF Award #1914569 from the US NSF to Columbia University. ORC, KLC and AG were supported by the NOAA Cooperative Agreement with CIRES, NA17OAR4320101. IAGOS has been funded by the European Union projects IAGOS-DS (Design Study) and IAGOS-ERI (European Research Infrastructure). The IAGOS database is supported in France by AERIS (https://www.aeris-data.fr, last access: 30 June 2022). We acknowledge the strong support of the European Commission, Airbus and the airlines (Deutsche Lufthansa, Air France, Cathay Pacific, Iberia, China Airlines and Hawaiian Airlines) that carry the IAGOS equipment, partner institutions of the IAGOS Research Infrastructure (FZJ, DLR, MPI, and KIT in Germany; CNRS, Météo-France, and Université Toulouse III Paul Sabatier in France; the University of Manchester in the UK), and national agencies in Germany (BMBF), France (MESR), and the UK (NERC).",True,True,False acknowledgement,10.48550/arxiv.1804.06506,doi10.48550/arxiv.1804.06506,"We thank our anonymous reviewers for their valuable feedback, as well as the Irish centre for high-end computing (www.ichec.ie) for providing computational infrastructures. This work has been supported by the ADAPT Centre for Digital Content Technology which is funded under the SFI Research Centres Programme (Grant 13/RC/2106) and is co-funded under the European Regional Development Fund.",True,False,False acknowledgement,10.21203/rs.3.rs-560961/v1,doi10.21203/rs.3.rs-560961/v1,Funding: This study was supported by the National Key Research and Development Program of China\2016YFC1000202\.,True,False,False acknowledgement,10.21203/rs.3.rs-59683/v3,doi10.21203/rs.3.rs-59683/v3,"The UK Medical Research Council and Wellcome (Grant ref: 217065/Z/19/Z) and the University of Bristol provide core support for ALSPAC. A comprehensive list of grants funding is available on the ALSPAC website (http://www.bristol.ac.uk/alspac/external/documents/grant-acknowledgements.pdf). | JMA is supported by a studentship from the UK Economic and Social Research Council (ESRC). This study was supported in part by a grant from the Elizabeth Blackwell Institute for Health Research, University of Bristol, and Wellcome Trust Institutional Strategic Support Fund (105612/Z/14/Z) to CMAH. JMA, OSPD, and CMAH are members of the MRC Integrative Epidemiology Unit at the University of Bristol funded by the Medical Research Council (https://mrc.ukri.org/; MC_UU_00011/4, MC_UU_00011/7). OSPD and CMAH were funded by the Alan Turing Institute under the EPSRC grant EP/N510129/1. The study was also supported by the NIHR Biomedical Research Centre at the University",True,False,False acknowledgement,10.1101/2022.02.03.478949,doi10.1101/2022.02.03.478949,"We want to thank Tim Krause for maintaining fly stocks, Gaia Tavosanis, Eugenia Chiappe and Michael Dickinson for sharing fly stocks and Elhanan Ben-Yishay and Kevin Briggman for comments on the manuscript. This work was funded by the German Research Foundation (DFG) through the Emmy-Noether program.",True,False,False acknowledgement,10.48550/arxiv.1804.07893,doi10.48550/arxiv.1804.07893,This work was supported by JST Presto Grant Number JPMJPR14E5 and HITE funding. We thank Shuntaro Takahashi for offering his comments and providing the machine-generated data reported in §5.,True,True,False acknowledgement,10.48550/arxiv.math/0503113,doi10.48550/arxiv.math/0503113,Le premier auteur est partiellement soutenu par une bourse de la Conseil de recherches en sciences naturelles et engénie du Canada. The second author is partially supported by the National Science Foundation.,True,False,False acknowledgement,10.48550/arxiv.2107.05710,doi10.48550/arxiv.2107.05710,The authors are sincerely grateful to the Mittag-Leffler in-stitute for the hospitality in June 2018.,True,False,False acknowledgement,10.1101/2024.05.09.593021,doi10.1101/2024.05.09.593021,This study was supported by the Japan Society for the Promotion of Science Grant-in-Aid for JSPS Fellows Grant Numbers JP22KJ1779 (HO) and KAKENHI Grant Numbers JP21K14863 (MT). The work by AM was supported by the National Institute of Food and Agriculture Hatch project accession number 1019324.,True,True,False acknowledgement,10.48550/arxiv.1912.08898,doi10.48550/arxiv.1912.08898,"This research was supported by the Bijzonder Onderzoeksfunds (BOF) of the University of Antwerp, the Fonds voor Wetenschappelijk Onderzoek Vlaanderen, project G.0429.15.N, and the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement number 665501.",True,False,False acknowledgement,10.1101/2024.03.01.583034,doi10.1101/2024.03.01.583034,"This study was funded by Velux Stiftung (project no. 1283, awarded to AG with KRR as co-applicant). EC was supported by the SNSF Early Postdoc.Mobility (no. 199692 awarded to EC with AG as host). The authors would like to thank the student and staff researchers behind the data collection platform agestudy.nl. We thank Sander Nieuwenhuis for his help in editing this manuscript and improving its readability.",True,True,False acknowledgement,10.1101/2023.03.24.23287549,doi10.1101/2023.03.24.23287549,"The authors thank Saskia Vadder (University of Bonn) for technical assistance. This work was supported by grants from the Australian National Health and Medical Research Council (2003159, 2003756; S.L.M.), fellowships from the Victorian Endowment for Science Knowledge and Innovation (S.L.M.), the HHMI-Wellcome International Research Scholarship (S.L.M.) and the Sylvia and Charles Viertel Foundation (S.L.M.). S.D. acknowledges funding from NHMRC grants (GNT1143412 and GNT2003756).",True,False,False acknowledgement,10.1101/2021.08.22.456585,doi10.1101/2021.08.22.456585,Q.L. acknowledges funding from International cooperation program of Chinese Academy of Sciences (151221KYSB20200014) and National Natural Science Foundation of China (41877047). T.M.B. acknowledges funding from The Netherlands Organization for Scientific Research (NWO VICI grant 865.14.006).,True,False,False acknowledgement,10.48550/arxiv.2306.15973,doi10.48550/arxiv.2306.15973,This research was supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant agreement No. 786758).,True,False,False acknowledgement,10.1101/2022.10.08.511432,doi10.1101/2022.10.08.511432,"This work was supported by the Lundbeck Foundation BRAINSTRUC structural biology initiative (R155-2015-2666, to K.L.-L.), the PRISM (Protein Interactions and Stability in Medicine and Genomics) centre funded by the Novo Nordisk Foundation (NNF18OC0033950, to K.L.-L.) and by NIH grant R01GM112846 (to T.M.) and by the American Lebanese Syrian Associated Charities (to T.M.). We acknowledge access to computational resources from the ROBUST Resource for Biomolecular Simulations (supported by the Novo Nordisk Foundation; NNF18OC0032608), the Danish National Supercomputer for Life Sciences (Computerome), and the Biocomputing Core Facility at the Department of Biology, University of Copenhagen. We thank Melissa R. Marzahn and Erik W. Martin for the generation of preliminary data. We thank Shirish Chodankar for assistance with SAXS data collection and reduction. The LiX beamline is part of the Center for BioMolecular Structure (CBMS), which is primarily supported by the National Institutes of Health, National Institute of General Medical Sciences (NIGMS) through a P30 Grant (P30GM133893), and by the DOE Office of Biological and Environmental Research (KP1605010). LiX also received additional support from NIH Grant S10 OD012331. As part of NSLS-II, a national user facility at Brookhaven National Laboratory, work performed at the CBMS is supported in part by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences Program under contract number DE-SC0012704.",True,True,False acknowledgement,10.48550/arxiv.0802.4116,doi10.48550/arxiv.0802.4116,"Acknowledgements The experimental part of the work has been done in collaboration with numerous members of my group, including Alexei Gaidarzhy, Robert Badzey, Guiti Zolfagharkhani, Yu Chen, Matthias Imboden, Josef-Stefan Wenzler, Tyler Dunn and Diego Guerra. This work is supported by National Science Foundation (grant no. DMR-0449670).",True,False,False acknowledgement,10.48550/arxiv.1110.4245,doi10.48550/arxiv.1110.4245,"This research was supported in part by the Ministry of Education, Science, Sports and Culture; Grant-in-Aid for Scientific Research (C) number 21560388 and Grant-in-Aid for Scientific Research (C) number 23560439. Contact email: kurkoski.ice.uec.ac.jp",True,False,False acknowledgement,10.1101/2023.10.12.562042,doi10.1101/2023.10.12.562042,"This work was supported by funds from the Canadian Institutes for Health Research (CIHR project grant), the Canadian Foundation for Innovation and the start-up funds from the Montreal Heart Institute (MHI) to AS. AS is a recipient of the Fonds de Recherche du Québec-Santé (FRQS) Senior salary award. Manon Henry is supported by a PhD fellowship from the Natural Sciences and Engineering Research Council of Canada-CREATE program EvoFunPath. RA is a recipient of the Fonds de recherche du Québec (FRQ) and the Palestine Academy for Science and Technology (PALAST) collaborative fund.",True,False,False acknowledgement,10.48550/arxiv.2404.10932,doi10.48550/arxiv.2404.10932,"R.S was financially supported by the CONACYT-DAAD scholarship program. F.P. acknowledges financial support from C.Y. Initiative of Excellence (grant Investissements d'Avenir ANR-16-IDEX- 0008), INEX 2021 Ambition Project CollInt, Labex MME-DII, projects 2021-258 and 2021-297, and ANR-22-CE30 grant ""Push-pull"".",True,False,False acknowledgement,10.21203/rs.3.rs-4327726/v1,doi10.21203/rs.3.rs-4327726/v1,"This work was funded by the Sichuan Province Science and Technology Support Program (2022NSFSCO986), and China West Normal University Support Program (20A007, 20E051, 21E040, and 22kA011)",True,False,False acknowledgement,10.21203/rs.3.rs-909955/v1,doi10.21203/rs.3.rs-909955/v1,"This work was supported by ""Core Technology Development of Subsonic Capsule Train"" of the Korea Railroad Research Institute under Grant PK2101A1, Republic of Korea.",True,False,False acknowledgement,10.48550/arxiv.1710.00947,doi10.48550/arxiv.1710.00947,"This work was supported in part by the National Science Foundation (NSF) under grant CCF-1320953. Saiprasad Ravishankar was supported in part by the following grants: ONR grant N00014-15-1-2141, DARPA Young Faculty Award D14AP00086, ARO MURI grants W911NF-11-1-0391 and 2015-05174-05, and a UM-SJTU seed grant.",True,False,False acknowledgement,10.26434/chemrxiv-2022-7xwl7,doi10.26434/chemrxiv-2022-7xwl7,This work was funded by the Louisiana Board of Regents (LEQSF(2019-22)-RD-A-14). Portions of this research were conducted with high performance computing resources provided by Louisiana State University (http://www.hpc.lsu.edu).,True,False,False acknowledgement,10.48550/arxiv.1710.02481,doi10.48550/arxiv.1710.02481,"† Work supported by Spanish grants MINECO:FPA2011-27853-C02-01, FPA2014-53375-C2-1-P and FPA2016- 75654-C2-1-P, and carried out in the inspiring atmosphere of the theoretical physics department and UPARCOS.",True,False,False acknowledgement,10.48550/arxiv.2303.10546,doi10.48550/arxiv.2303.10546,"We thank all of our participants for their time and feedback. We are grateful to Jack Tsai and our colleagues for their contributions to this project. Katie, Indy, Grampa, and Desmond contributed invaluabley to the inspiration and development of the pet apps. Funding was provided by Snap Inc. The first author is also supported by a NASA grant (80NSSC19K1133).",True,False,False acknowledgement,10.21203/rs.3.rs-1520224/v1,doi10.21203/rs.3.rs-1520224/v1,Funding: This research was funded by the Science and Technology Major Special Project of Fujian Province (2021HZ021027).,True,False,False acknowledgement,10.48550/arxiv.1503.07794,doi10.48550/arxiv.1503.07794,"We acknowledge useful discussions with David Pollock, University of Colorado and funding from the Medical Research Council, U.K (funding reference U117573805).",True,False,False acknowledgement,10.48550/arxiv.hep-ph/9604263,doi10.48550/arxiv.hep-ph/9604263,"The author is grateful to F. Barreiro (who had performed a preliminary fit to the old HERA data with our formulas) for communicating his results, for discussions and for information on the as yet unpublished more recent data. Thanks are also due to K. Adel, whose program ""Kdraw"" has been used for the figures. The partial financial support of CICYT, Spain, is also acknowledged.",True,True,False acknowledgement,10.48550/arxiv.2303.04960,doi10.48550/arxiv.2303.04960,"We acknowledge technical support from L. Hutin, D. Lepoittevin, I. Pheng, T. Crozes, L. Del Rey, D. Dufeu, J. Jarreau, C. Hoarau and C. Guttin. We thank S. De Franceschi and R. Maurand for fruitful discussions and I. De Moraes and N. Dempsey for help with micromagnet fabrication. B.K., D.J.N. acknowledges the GreQuE doctoral programs (grant agreement No.754303). The device fabrication is funded through the Mosquito project (Grant agreement No.688539). This work is supported by the Agence Nationale de la Recherche through the CRYMCO and the PEPR PRESQUILE project. This project receives as well funding from the project QuCube (Grant agreement No.810504) and the project QLSI (Grant agreement No.951852).",True,False,False acknowledgement,10.21203/rs.3.rs-1092426/v1,doi10.21203/rs.3.rs-1092426/v1,"This work was supported by the National Natural Science Foundation of China (52022029, 91850116, 51772084, U19A2090) and the Key Program of the Hunan Provincial Science and Technology Department (2019XK2001).",True,False,False acknowledgement,10.48550/arxiv.math/9710203,doi10.48550/arxiv.math/9710203,Research supported by German Academic Exchange Service (DAAD),True,False,False acknowledgement,10.21203/rs.3.rs-1548457/v1,doi10.21203/rs.3.rs-1548457/v1,"This work was supported by the National Natural Science Foundation of China (81902726), the China Postdoctoral Science Foundation (2018M641739).",True,False,False acknowledgement,10.1101/2023.11.16.567453,doi10.1101/2023.11.16.567453,"Funding: This publication was supported by the Eunice Kennedy Shriver National Institute of Child Health and Human Development of the National Institutes of Health under the Award R01-HD097331/HD/NICHD (P.E.F), and by the National Institute of Deafness and Other Communication Disorders of the National Institutes of Health under the Award R01-DC017149 (P.E.F).",True,False,False acknowledgement,10.26434/chemrxiv.14130317.v1,doi10.26434/chemrxiv.14130317.v1,"The authors wish to acknowledge the financial support from the National Natural Science Foundation of China (51922027), the Scientific Research Foundation of Graduate School of Southeast University, China (YBPY1902), the Program of China Scholarships Council (No. 201806090031), the Fundamental Research Funds for the Central Universities, the Swiss National Science Foundation (156015), and the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 819573. | We acknowledge the financial support from the National Natural Science Foundation of China (51922027), the Scientific Research Foundation of Graduate School of Southeast University, China (YBPY1902), the Program of China Scholarships Council (No. 201806090031), the Fundamental Research Funds for the Central Universities, and the Swiss National Science Foundation (156015). C.M. acknowledges funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program grant agreement No. 819573. We also thank Maximilian Krödel and Lorenz Abduly for discussion, Agnieszka Kierzkowska for performing SEM characterization, and the Scientific Center for Optical and Electron Microscopy (ScopeM) of ETH Zurich for providing access to SEM facilities.",True,False,False acknowledgement,10.48550/arxiv.2005.11835,doi10.48550/arxiv.2005.11835,"Acknowledgements. The authors are grateful to Tim Browning and Efthymios Sofos for useful conversations, and to Jean-Louis Colliot-Thélène for his interest in our work. They are also indebted to the anonymous referees and Ben Green for the useful feedback and for pointing out some oversights in previous versions of this work. During part of this work, Francesca Balestrieri was supported by the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant 840684. During part of this work, Nick Rome was supported by EPSRC Studentship EP/N509619/1 179379.",True,False,False acknowledgement,10.21203/rs.3.rs-833535/v1,doi10.21203/rs.3.rs-833535/v1,"This work was supported by the following research projects: National Natural Science Foundation of China (Grant numbers 52075269 and 51405238), The Fundamental Research Funds for the Central Universities (Grant number KYTZ201603), The Innovation Fund of Science and Technology for Outstanding Youth from College of Engineering, Nanjing Agricultural University (Grant number YQ201606), and Qing Lan Project of Jiangsu Province (Grant number 80400103). The authors would like to express their appreciation to the agencies.",True,True,False acknowledgement,10.48550/arxiv.1001.3723,doi10.48550/arxiv.1001.3723,The author was supported by a NDSEG Graduate Research Fellowship and an NSF Postdoc- toral Research Fellowship in the Mathematical Sciences. Some editing was done while a guest at the Max-Planck-Institut F ̈ur Mathematik in Bonn. Final submission occurred while the author was supported by NSF grant DMS-1265290.,True,False,False acknowledgement,10.48550/arxiv.2010.04565,doi10.48550/arxiv.2010.04565,"This work is partly supported by MEITY, Government of India.",True,False,False acknowledgement,10.1101/784256,doi10.1101/784256,Financial Support: NIH R01-CA133571,True,False,False acknowledgement,10.21203/rs.3.rs-2910473/v1,doi10.21203/rs.3.rs-2910473/v1,Financial support from the BMBF (grant no. FKZ:03Z22HN11) is greatly acknowledged.,True,False,False acknowledgement,10.48550/arxiv.2207.14105,doi10.48550/arxiv.2207.14105,"The work was supported by the National Natural Science Foundation of China (grants No. 12175320, 11975320 and No. 11805242), the Natural Science Foundation of Guangdong Province, China (grant No. 2022A1515010280), and by the Chinese Academy of Sciences President's International Fellowship Initiative (grant No. 2019VMA0019). A. J. S. also acknowledges hospitality and support by the Institute of Modern Physics of the Chinese Academy of Sciences.",True,False,False acknowledgement,10.48550/arxiv.1703.05261,doi10.48550/arxiv.1703.05261,"The authors are grateful to Lydéric Bocquet and JeanPierre Hansen for useful discussions. They acknowledge financial support from IFPEN and access to computing resources on Curie (TGCC, French National HPC) via the GEnCI project x2016087684 and on MeSU (UPMC).",True,False,False acknowledgement,10.1101/751537,doi10.1101/751537,This study was supported by FIOCRUZ.,True,False,False acknowledgement,10.1101/2022.02.25.481978,doi10.1101/2022.02.25.481978,"This work was funded by the CNRS (NJ), Institut Pasteur (NJ), 'Urgence COVID-19' fundraising campaign of Institut Pasteur (NJ), ANR-DARK COVID (AM/NJ) and DIM-1-Health (NJ/AM). DF postdoctoral fellowship was supported by the DIM-1-Health from the Conseil Régional d'Ile-de-France. SMA is supported by the Pasteur-Paris University (PPU) International PhD Program. The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.",True,False,False acknowledgement,10.21203/rs.3.rs-1604824/v1,doi10.21203/rs.3.rs-1604824/v1,This research was supported by funding received from the Cyclic Innovation for Clinical Empowerment as part of the Japan Agency for Medical Research and Development (AMED) under Grant Number 17pc0101018h0001.,True,False,False acknowledgement,10.21203/rs.3.rs-936619/v3,doi10.21203/rs.3.rs-936619/v3,This study is supported by the National Natural Science Foundation of China (82000831).,True,False,False acknowledgement,10.21203/rs.3.rs-2922379/v1,doi10.21203/rs.3.rs-2922379/v1,"This work was supported by the National Natural Science Foundation of China (No. 52002157 and 22279166), the Postgraduate Research & Practice Innovation Program of Jiangsu Province (KYCX22_3790), and Guangdong Basic and Applied Basic Research Foundation (2022B1515120019).",True,False,False acknowledgement,10.48550/arxiv.math/0405198,doi10.48550/arxiv.math/0405198,*Financially supported by the Swiss National Science Foundation. | Acknowledgements. The author gratefully acknowledges the support by the Swiss National Science Foundation. Many thanks to Hanspeter Kraft for his warm support.,True,False,False acknowledgement,10.21203/rs.2.15949/v1,doi10.21203/rs.2.15949/v1,"This work was supported by grants from the National Natural Science Foundation of China (81672211, 81772392, 81601928, 81702149 and 81772376), Science and Technology Innovation project of Shanghai Science and Technology Committee (16140901700), ""Chen Guang"" project supported by Shanghai Municipal Education Commission and Shanghai Education Development Foundation (Grant No.17CG36). We thank Shanghai NovelBio Bio-Pharm Technology Co., Ltd for the help with NGS data analysis.",True,True,False acknowledgement,10.1101/2021.11.05.467508,doi10.1101/2021.11.05.467508,"Acknowledgement: This work was funded by Department of Science and Technology, Govt of India (EMR/2014/000366) and FRPDF scheme, Presidency University, Kolkata, India.",True,False,False acknowledgement,10.48550/arxiv.2312.06030,doi10.48550/arxiv.2312.06030,"Acknowledgment This OCE-2023541 work (C.L. was and supported E.K.) and by OCE-2023499 the National Science (M.S. and Foundation K.J.). This under work utilized Grant Nos. the Blanca condo computing resource at the University of Colorado Boulder. Blanca is jointly funded by computing users and the University of Colorado, Boulder. C.L. also acknowledges support from the Connecticut Sea Grant PD-23-07 and NASA CT Space Grant P-2104 during the completion of this work. Part of the computational work performed on this project was done with the help from the Storrs High Performance Computing cluster. C.L. would like to thank the UConn Storrs HPC and HPC team for providing the resources and support that contributed to these results.",True,False,False acknowledgement,10.48550/arxiv.2310.11528,doi10.48550/arxiv.2310.11528,The first and second author are supported by MUR grant Dipartimento di Eccellenza 2023-2027.,True,False,False acknowledgement,10.21203/rs.3.rs-3150861/v1,doi10.21203/rs.3.rs-3150861/v1,This work was supported by Tianjin Municipal Education Commission (grant number 2021KJ248),True,False,False acknowledgement,10.48550/arxiv.2108.03556,doi10.48550/arxiv.2108.03556,Acknowledgements. This research was supported by NSFC (11922110).,True,False,False acknowledgement,10.1101/849232,doi10.1101/849232,"This research was supported by grants from the Tertiary Education Commission to the Bio-Protection Research Centre, the Royal Society of New Zealand Marsden Fund (MAU1301) and by Massey University. BH was supported by a Massey University PhD studentship and BS by an Alexander von Humboldt Research Award.",True,False,False acknowledgement,10.48550/arxiv.1609.03129,doi10.48550/arxiv.1609.03129,Acknowledgements We thank Allan L. Reiss and his group for providing the MRI scans and Celia Butler and Simpleware for their support in creating the finite element mesh of the brain. This work was supported by the Timoshenko Scholar Award to Alain Goriely and by the Humboldt Research Award and the National Institutes of Health grant U01 HL119578 to Ellen Kuhl.,True,False,False acknowledgement,10.48550/arxiv.2108.13390,doi10.48550/arxiv.2108.13390,"Acknowledgments. HJH was partially supported by the DFG under Germany's Excellence Strategy EXC 2044-390685587 ""Mathematics Münster: Dynamics-Geometry-Structure"" as well as by the CRC 1442 ""Geometry: Deformations and Rigidity"" of the DFG.",True,False,False acknowledgement,10.48550/arxiv.2004.14722,doi10.48550/arxiv.2004.14722,The first author thanks Sourav Chatterjee for some insightful remarks. The comments by Stefka Kirilova and Vincent Plassier are also gratefully acknowledged. The authors would also like to thank the Associate Editor and an anonymous Referee for comments that helped improve the presentation of the paper and for pointing out particularly relevant references. The second author gratefully acknowledges funding by FNRS-F.R.S. grant CDR J.0146.19.,True,False,False acknowledgement,10.21203/rs.3.rs-1642375/v1,doi10.21203/rs.3.rs-1642375/v1,This work is supported by National Natural Science Foundation of China (Grant No. 51275280).,True,False,False acknowledgement,10.21203/rs.3.rs-526162/v1,doi10.21203/rs.3.rs-526162/v1,"Acknowledgement This project has received funding from the Deanship of Scientific Research, King Faisal University, Al-Ahsa, Saudi Arabia. Grant Number-1811009",True,False,False acknowledgement,10.31219/osf.io/b235h,doi10.31219/osf.io/b235h,This project has received funding from the European Research Council (ERC) under the European Unions Horizon 2020 research and innovation program under grant agreement No. 694807 ENRICO. The simulations were carried out on the ELWE supercomputer at Regional University Computing Center Kaiserslautern (RHRK) under the grant TUK-TLMV. The present research was conducted under the auspices of the Boltzmann-Zuse Society of Computational Molecular Engineering (BZS).,True,False,False acknowledgement,10.1101/2024.06.17.599326,doi10.1101/2024.06.17.599326,"Funding: This study was supported by multiple funding sources. Academic funding was provided by the University of Zurich through the UZH Alumni Science, the Faculty of Science (MNF), the Faculty of Medicine, the Vice President Research, and the President's Services. Private sponsorship was provided by Pierre Fabre, Microsynth, the Swiss Academy of Sciences (SCNAT), and Promega. Additionally, this publication was funded by the University of Zurich and the Consortium of Swiss Academic Libraries, making it available as open access.",True,False,False acknowledgement,10.48550/arxiv.math/9806040,doi10.48550/arxiv.math/9806040,The third author is supported by NSF grant DMS-9508976 and NSA grant MSPR-Y012. The last author supported in part by the NSF.,True,False,False acknowledgement,10.48550/arxiv.2210.13777,doi10.48550/arxiv.2210.13777,"This research was supported by NSF IIS-2044660, ONR N00014-18-1-2826, ONR MURI N00014- 18-1-2670, a Sloan fellowship and gifts from AI2. We thank the Semantic Scholar team at AI2, UWNLP, and the H2lab at UW for helpful comments and feedback. Thanks to Xiangci Li and Ronak Pradeep for help with PARAGRAPHJOINT and VERT5ERINI, respectively.",True,False,False acknowledgement,10.48550/arxiv.1411.2632,doi10.48550/arxiv.1411.2632,"Acknowledgments: We are grateful for the computing resources made available by HPC Wales and by STFC through DiRAC computing facilities. This work is supported by STFC, the Royal Society, the Wolfson Foundation and the Leverhulme Trust. FA is grateful for the support through the Brazilian government program ""Science without Borders"" under scholarship number Bex 9463/13-5.",True,False,False acknowledgement,10.1101/273839,doi10.1101/273839,"This work was funded through the National Science Foundation Graduate Research Fellowship Program and Howard Hughes Medical Institute. We are grateful for field assistance from Patrick O'Grady, Kelly Schiabor, Kyle Barrett, Elizabeth Roeske, Carolyn Elya, Addie Norgaard, Ciera Martinez, and Jesse Rau. We are also indebted to Nick Bokulich, David Mills, Angus Chandler, Rachel Adams, Sydney Glassman, Shana McDevitt, and Dylan Smith for their advice in fungal amplicon experimental design and data analysis. David Hembry and Will Ludington provided valuable feedback on the drafts of this manuscript. None of this would have been possible without the generosity of Ridge Vineyards, DaVero Farms & Winery, Les Lunes Wine, and Populis Wine with special thanks to Shun Ishikubo, Eric Baugher, Mike Bairdsmith, and Will Thomas.",True,True,False acknowledgement,10.48550/arxiv.2003.12113,doi10.48550/arxiv.2003.12113,Max Weinreich was supported by a National Science Foundation Graduate Research Fellowship under Grant No. 2040433.,True,False,False acknowledgement,10.48550/arxiv.1812.02396,doi10.48550/arxiv.1812.02396,Acknowledgement. The authors would like to thank the referee for his/her valuable and insightful comments on our previous version of the article. We also thank him/her for suggestions of improving the expositions of the article. Nicholas Chin is partially supported by the HKUST postgraduate studentship. Jingbo Wan is partially supported by the HKUST Undergraduate Research Opportunity Project (UROP). The research conducted is partially supported by the second-named author's Hong Kong RGC Early Career Grant #26301316 and General Research Fund #16302417.,True,False,False acknowledgement,10.1101/2022.04.13.488155,doi10.1101/2022.04.13.488155,The authors would like to thank Fraser Aitken for help with early piloting of the experimental paradigm. This work was supported by a Wellcome/Royal Society Sir Henry Dale Fellowship [218535/Z/19/Z] and a European Research Council (ERC) Starting Grant [948548] to P.K. The Wellcome Centre for Human Neuroimaging is supported by core funding from the Wellcome Trust [203147/Z/16/Z].,True,False,False acknowledgement,10.48550/arxiv.2008.04105,doi10.48550/arxiv.2008.04105,This work has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 675891 (SCAVENGE) and by Spanish MINECO grant TEC2017-88373-R (5G-REFINE).,True,False,False acknowledgement,10.48550/arxiv.2108.00974,doi10.48550/arxiv.2108.00974,"This work has been sponsored by UMU-CAMPUS LIVING LAB EQC2019- 006176-P funded by ERDF funds, by the European Commission through the PHOENIX (grant agreement 893079) CyberSec4Europe (g.a. 830929) and DEMETER (g.a. 857202) EU Projects. It was also co-financed by the European Social Fund (ESF) and the Youth European Initiative (YEI) under the Spanish Seneca Foundation (CARM).",True,False,False acknowledgement,10.48550/arxiv.2112.13256,doi10.48550/arxiv.2112.13256,The authors thank King Fahd University of Petroleum and Minerals (KFUPM) for its continuous supports. This work is supported by KFUPM under project # SB201026.,True,False,False acknowledgement,10.21203/rs.3.rs-1595440/v1,doi10.21203/rs.3.rs-1595440/v1,This work was supported by the National Key Research and Development Program of China for International Science & Innovation Cooperation Major Project between Governments (Grant No.,True,False,False acknowledgement,10.48550/arxiv.2103.04506,doi10.48550/arxiv.2103.04506,"This work was supported in part by the National Science Foundation under grants CCF-1816594/1817267, OAC-1835292, and CNS-1823177/1823214.",True,False,False acknowledgement,10.1101/744300,doi10.1101/744300,The present work was supported by the Swiss National Foundation (31003A_176038) and Swiss Cancer Research (KFS-4281-08-2017).,True,False,False acknowledgement,10.21203/rs.3.rs-4047752/v1,doi10.21203/rs.3.rs-4047752/v1,"We gratefully acknowledge the Luxembourg School of Business for providing the technological support for this research. Additionally, the authors would like to acknowledge the contribution of the COST Action CA21169 (DYNALIFE), supported by COST (European Cooperation in Science and Technology).",True,False,False acknowledgement,10.21203/rs.3.rs-47288/v1,doi10.21203/rs.3.rs-47288/v1,"This work was supported by the USA National Science Foundation (award numbers 1608171 and 1922633). N.K. also acknowledges funding support from the John A. Clark and Edward T. Crossan endowed chair professorship at Rensselaer Polytechnic Institute (RPI). S.O.K. was financially supported by the National Creative Research Initiative (CRI) Center for Multi-Dimensional Directed Nanoscale Assembly (2015R1A3A2033061) through the National Research Foundation of Korea (NRF). R. S-Y. and Y. Y. acknowledge the financial support from NSF CBET-1805938. This work made use of instruments in the Electron Microscopy Service (Research Resources Center, UIC). L. W. W. acknowledge support from Assistant Secretary for Energy Efficiency and Renewable Energy of the U. S. Department of Energy under Battery Materials Research (BMR) program. The theoretical work in this research used the resources of the National Energy Resources Scientific Computing Center (NERSC) that is supported by the office of Science of the U. S. Department of Energy.",True,False,False acknowledgement,10.1101/2024.06.13.598853,doi10.1101/2024.06.13.598853,"This work was supported by NIH award R35 CA220340 to S.C.B., R01GM139960 to K.A., a National Science Foundation Graduate Research Fellowship (DGE1745303) and the Sophia H.Y Chang Fellowship to C.A.M., a CIHR Banting Postdoctoral Fellowship to B.J.E.M., and a LLS Career Development Fellowship and K99GM144750 grant to J.M.R..",True,False,False acknowledgement,10.21203/rs.3.rs-4400225/v1,doi10.21203/rs.3.rs-4400225/v1,"This work was supported by Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) (270949263/GRK2162 to JEA, VS, RMB, MR, and BW; 505539112/KFO5024 to BW and IP; GRK2599 to IP; 535375124 to KMG); the Fritz Thyssen Foundation (10.19.2.024MN to IP), Johannes and Frieda Marohn Foundation (to IP), and ELAN Fonds of the University Hospital of Erlangen (P117 to IP); Swedish research council and the Crafoord Foundation (to LR); German Academic Scholarship Foundation, the Max Weber-Program of the State of Bavaria and the German National Exchange Service (to JEA); Bavarian Ministry of Research and the Arts in the framework of the ForInter network.",True,False,False acknowledgement,10.48550/arxiv.2003.13201,doi10.48550/arxiv.2003.13201,"Manuscript received xxx xxx, xxx; revised xxx xxx, xxx; accepted xxx xxx, xxx. This work was supported in part by the National Key R&D Program under Grant 2018YFB1004800, by the National Natural Science Foundation of China under Grants 61872184, 61727802, 61571299 and 61671294, by the STCSM Key Fundamental Project under Grants 16JC1402900 and 17510740700, by the National Science and Technology Major Project under Grant 2018ZX03001009-002, by the U.S. National Science Foundation under Grants CCF-0939370 and CCF-1513915. (Corresponding authors: Long Shi, Jun Li.)",True,False,False acknowledgement,10.26434/chemrxiv.12510011,doi10.26434/chemrxiv.12510011,We thank Chunxia Zou for NEU1 production. CH acknowledges support from an NSERC CGSD Scholarship. EP acknowledges support from an NSERC USRA. This work was supported by a grant from the Natural Sciences and Engineering Research Council of Canada (NSERC) and the Alberta Glycomics Centre.,True,False,False acknowledgement,10.48550/arxiv.2503.13892,doi10.48550/arxiv.2503.13892,"Acknowledgements. We are grateful to an anonymous referee for valuable comments, which have improved the paper significantly. This work is supported by the National Natural Science Foundation of China (NSFC) through grants 12090040, 12090042, 12073060, 12333008, and 12288102. Y.Z. acknowledges the support from the science research grants from the Chinese Academy of Sciences (CAS) ""Light of West China"" Program (No. 2022-XBQNXZ-013), the Natural Science Foundation of Xinjiang Uygur Autonomous Region (No. 2022D01E86), Central Guidance for Local Science and Technology Development Fund (No. ZYYD2025QY27), the National Key R\&D Inter governmental Cooperation Program of China (No. 2023YFE0102300) and the Tianshan Talent Training Program with No. 2023TSYCCX0101. J.Z. would like to acknowledge the National Key R\&D Program of China No.2019YFA0405501, the Youth Innovation Promotion Association CAS, the science research grants from the China Manned Space Project with NO. CMS-CSST-2021-A08, the Science and Technology Commission of Shanghai Municipality (Grant No. 22dz1202400), the Shanghai Science and Technology Program (Grant No.20590760800), and Sponsored by Program of Shanghai Academic/Technology Research Leader. X.M. acknowledges support from the International Centre of Supernovae, Yunnan Key Laboratory (No. 202302AN360001), and Yunnan Fundamental Research Projects (Nos. 202401BC070007 and 202201BC070003). K.W. acknowledges support from the DFG grant Sp 345/24-1. G.L. thanks Ruqiu Lin for the helpful discussions and Qiuyi Luo for assisting with checking the gas data. This work has made use of data from the European Space Agency (ESA) mission Gaia , processed by the Gaia Data Proces-Processingalysis Consortium (DPAC,https: //www.cosmos.esa.int/web/gaia/dpac/consortium). In addition to those cited in the main body of the text, this work made use of the open source Python packages Astropy (Astropy Collaboration et al. 2013, 2018), SciPy (Virtanen et al. 2020), matplotlib (Hunter 2007), NumPy (Harris et al. 2020), scikit-learn (Pedregosa et al. 2011), galpy (Bovy 2015) and PeTar (Wang et al. 2020).",True,True,True acknowledgement,10.48550/arxiv.2412.14502,doi10.48550/arxiv.2412.14502,"Partial support for this work for AFG, KWW and LR is provided by the U.S. National Science Foundation grants AST-112595 and AST17- 14205 to the University of Minnesota. SS thanks the Australian Research Council for an Early Career Fellowship DE130101399. HA has benefited from University of Guanajuato grant DAIP #66/2018. HT gratefully acknowledges the support from the Shuimu Tsinghua Scholar Program of Tsinghua University; the fellowship of China Postdoctoral Science Foundation 2022M721875; and long lasting support of JBCA machine learning group, IAU OAD endorsed project team RGZ_CN (2018) and EMU_Zoo (2022). BDS acknowledges support from a UK Research and Innovation Future Leaders Fellowship [grant number MR/T044136/1]. | The Wide-field Infrared Survey Explorer is a joint project of the University of California, Los Angeles, and the Jet Propulsion Laboratory/California Institute of Technology, funded by the National Aeronautics and Space Administration. This publication makes use of radio data from the Karl G. Jansky Very Large Array (operated by NRAO). The National Radio Astronomy Observatory is a facility of the National Science Foundation operated under cooperative agreement by Associated Universities, Inc.",True,True,False acknowledgement,10.1101/2022.12.22.521623,doi10.1101/2022.12.22.521623,"This work was supported by the U.S. Food and Drug Administration (FDA) through the FDA-CBER Award 1R01FD006588, Agilent Technologies University Relations Grant 4481, PC5.2-112 NIMBL Project Award, and in part by the appointment of Aron Gyorgypal to the Research Participation Program at FDA, administered by ORAU through the U.S. Department of Energy Oak Ridge Institute for Science and Education (ORISE). The authors would like to thank Agilent Technologies Inc. (Mr. Wayne Heacock, and Dr. Ace Galermo) for their extensive and timely support of this project. As well as the Office of Biotechnology Products (OBP) Bioprocessing Lab (Dr. Cyrus Agarabi, Dr. Erica Fratz-Berilla, Mrs. Casey Kohnhorst) at the U.S. FDA Center for Drug Evaluation and Research (CDER) for their support in",True,False,False acknowledgement,10.48550/arxiv.math/0101263,doi10.48550/arxiv.math/0101263,J.E.C. was supported in part by an N.S.F. Postdoctoral Research Fellowship. M.K. was supported in part by N.S.F. Grant DMS 9801558. G.S. was supported in part by N.S.F. Grant DMS 9800879 and the Terman Award. T.T. is a Clay Prize Fellow and was supported in part by grants from the Packard and Sloan Foundations.,True,False,False acknowledgement,10.1101/2022.06.23.497284,doi10.1101/2022.06.23.497284,"This study has been funded by Austrian Science Foundation (FWF) through projects P24265, P30885 and F7004. Studies in the lab of S.S. were funded by Austrian Science Fund (FWF) P27747. LS received an EFIS-IL Short-term Fellowship for a research stay at Vita San Raffaele University and Division of Immunology, Transplantation and Infectious Diseases, IRCCS San Raffaele Scientific Institute, Milan, Italy.",True,False,False acknowledgement,10.21203/rs.3.rs-2085947/v2,doi10.21203/rs.3.rs-2085947/v2,"The authors are thankful to the authorities of Thiagarajar College of Engineering, Madurai – 625015 to do this research work. This work was supported by DST-WOS-A fellowship scheme under Ref DST – WOS-A File No: SR/WOS-A/ET-9/2018 (2019-2022). | Funding: This work was supported by Department of Science and Technology-Women Scientist Scheme-A fellowship scheme under Ref DST – WOS-A File No: SR/WOS-A/ET-9/2018 (2019-2022).",True,False,False acknowledgement,10.48550/arxiv.2311.11156,doi10.48550/arxiv.2311.11156,"*This work was partially funded by Purdue’s Elmore Center for Uncrewed Aircraft Systems and the National Science Foundation, grant NSF-ECCS #2238388.",True,False,False acknowledgement,10.21203/rs.2.15269/v3,doi10.21203/rs.2.15269/v3,"Funding: This study was supported by a Ministry of Health, Labour and Welfare (MHLW) research grant of Japan (H29-shinkougyousei-shitei-005). Funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.",True,False,False acknowledgement,10.48550/arxiv.2012.09745,doi10.48550/arxiv.2012.09745,P.G. was supported by an Alfred P. Sloan Research Fellowship and by the National Science Foundation under Grants No. DMS-1954121 and No. DMS-2046915. T.L. was supported by a von Neumann Fellowship from the Institute for Advanced Study and by grants DMS-1464693 and DMS-1953852 from the National Science Foundation.,True,False,False acknowledgement,10.1101/2021.08.13.456260,doi10.1101/2021.08.13.456260,"Ecological, Evolutionary, and Conservation Genomics (EECG) Research Award to BJP, MU laboratory startup funds to TG, NSF DEB1110605 and DEB0920892 (to R. Glor), NSF IOS1146820 (to D. Zarkower), and NSF DEB1657662 (to TG). BJP was funded by the Department of Biological Sciences Graduate Research Fellowship (MU; 2018–2020), Catherine Grotelueschen Scholarship (MU; 2019), and by NIH project number 2R01GM116853-05 to M. Kirkpatrick (2020-2021).",True,False,False acknowledgement,10.1101/2022.04.06.487207,doi10.1101/2022.04.06.487207,"Funding sources: NASA Exobiology 80NSSC19K1633. | This study was funded through a NASA Exobiology program award to R.H. (80NSSC19K1633). A.K. and M.L. were supported in part by the Thermal Biology Institute and Montana State University's Vice President's Office of Research, Economic Development and Graduate Education. V.K. was supported in part by a grant from the W.M. Keck Foundation. A portion of this research was performed under the Facilities Integrating Collaborations for User Science (FICUS) program (proposal: 10.46936/fics.proj.2017.49972/6000002) and used resources at the DOE Joint Genome Institute (https://ror.org/04xm1d337), which is a DOE Office of Science User Facility operated under Contract No. DE-AC02-05CH11231.",True,False,True acknowledgement,10.48550/arxiv.2201.09747,doi10.48550/arxiv.2201.09747,"We thank A. C. Aguilar, M. N. Ferreira, C. S. Schneider and Nicolas Wink for discussions. A. W. thanks the ITP Heidelberg for its hospitality, and EMMI, Conacyt and CIC-UMSNH for support. This work is done within the fQCD collaboration [99], and is supported by EMMI and the Studienstiftung des deutschen Volkes, It is part of and supported by the DFG Collaborative Research Centre SFB 1225 (ISOQUANT) as well as by the DFG under Germany's Excellence Strategy EXC - 2181/1 - 390900948 (the Heidelberg Excellence Cluster STRUCTURES). This work is also supported by the Spanish AEI-MICINN grant PID2020-113334GB, and the grant Prometeo/2019/087 of the Generalitat Valenciana.",True,False,False acknowledgement,10.1101/531202,doi10.1101/531202,"This study was supported by the Alzheimer's Association New Investigator Research Award (NIRG-14-322164) to S.H.Y.; NIH grants P50 AG05131 (D.R.G.), U01 NS 074501-05 (S.L.W.), R01 LM012595 (S.S.), U01 CA198941 (S.S.), U01 DK097430 (S.S.), R01 HD084633 (S.S.), and R01 HL106579-07 (S.S.); NSF grant STC CCF-0939370 (S.S.); Veterans Affairs RR&D 1I01RX002259 (S.L.W); and Cure Alzheimer's Fund (CAF) grants to S.L.W.",True,False,False acknowledgement,10.48550/arxiv.1706.10195,doi10.48550/arxiv.1706.10195,"* The final publication is available at Springer via https://doi.org/10.1007/978-3-319-77404-6_ 20. The Netherlands Organisation for Scientific Research (NWO) is supporting B.S. under project no. 639.023.208, K.V. under project no. 639.021.541, and T.C. under project no. 314.99.117. The Danish National Research Foundation is supporting F.S. under grant nr. DNRF84.",True,False,False acknowledgement,10.21203/rs.3.rs-4255086/v1,doi10.21203/rs.3.rs-4255086/v1,"This study was supported by NIH R01 AI164519-02 (K.E.B.), R01 HL155346-01A1 (JVE), American Heart Association's Career Development award 23CDA1052548 (D.Y.C), Cedars-Sinai Department of Pathology and Laboratory Medicine Minigrants (K.E.B., Z.K), and Cedars-Sinai Startup Fund: 233040 (Z.K.).",True,False,False acknowledgement,10.48550/arxiv.1908.00931,doi10.48550/arxiv.1908.00931,"*Corresponding author. Jiangsheng Hu was supported by the NSF of China (Grants No. 11501257, 11671069, 11771212) and Qing Lan Project of Jiangsu Province. Panyue Zhou was supported by the Hunan Provincial Natural Science Foundation of China (Grant No. 2018JJ3205) and the NSF of China (Grants No. 11671221)",True,False,False acknowledgement,10.48550/arxiv.1912.10586,doi10.48550/arxiv.1912.10586,This work is supported by Office of Sponsored Research (OSR) at King Abdullah University of Science and Technology (KAUST).,True,False,False acknowledgement,10.21203/rs.3.rs-2189230/v1,doi10.21203/rs.3.rs-2189230/v1,"Funding This research was supported by the National Key Research and Development Program of China (2021YFF0702900), CAMS initiative for Innovative Medicine of China (2021-I2M-1-039, 2021-I2M-1-034), National Natural Science Foundation of China Grant (81941012, 82161138027).",True,False,False acknowledgement,10.48550/arxiv.1605.00848,doi10.48550/arxiv.1605.00848,"This work was partially supported by Ministerio de Economía y Competitividad (Spain), grant MTM2013-43687-P (European FEDER support included), by Xunta de Galicia, grant GRC2013-045 (European FEDER support included) and by Kazakhstan Ministry of Education and Science, grant 0828/GF4: ""Algebras, close to Lie: cohomologies, identities and deformations"". The last named author was partially supported by a grant from the Simons Foundation.",True,False,False acknowledgement,10.1101/2022.06.18.496655,doi10.1101/2022.06.18.496655,"This work was supported, in part, by Grants-in-Aid for Scientific Research (B) 20H03475 (to HN), Scientific Research (C) 19K07399 (to KM), and Scientific Research (C) 20K05238 (to SM) from the Japan Society for the Promotion of Science (JSPS), a Grant-in-Aid for Scientific Research on Innovative Areas (JP16H06280) — Platforms for Advanced Technologies and Research Resources ""Advanced Bioimaging Support"", from the Japan Agency for Medical Research and Development (AMED), under Grant Numbers 21gm1210002 (to HN) and 21wm0325050 (to KM), grants from the Ministry of Education, Culture, Sports, Science, and Technology, Japan, Toho University Grant for Research Initiative Program (TUGRIP) (to HN), the Science Research Promotion Fund, and The Promotion and Mutual Aid Corporation for Private Schools of Japan (to HN), a GSK Japan Research Grant 2020 (to KM), and a grant from the Takeda Science Foundation (to KM).",True,True,False acknowledgement,10.21203/rs.3.rs-515346/v1,doi10.21203/rs.3.rs-515346/v1,"This study was supported by the National Natural Science Foundation of China (51804164,51974163), Science and Technology Department Key R&D Plan Project of Hunan Province (2017SK2280), the Key Project of Hunan Provincial Education Department (18A248)",True,False,False acknowledgement,10.1101/2023.07.17.549440,doi10.1101/2023.07.17.549440,"Funding: MC and IBV are fellows from the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP); MC FAPESP process numbers: 2020/14897-6 and 2018/02924-9; IBV FAPESP process number: 2019/13419-6. This work was supported by FAPESP process number: 2017/22452-1 and 2014/10443-0, awarded to AMK and AHL respectively, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq). ISGlobal is a member of the CERCA Program, Generalitat de Catalunya. ISGlobal as Severo Ochoa center of excellence. Ramon Areces supports ISGlobal Malaria Program. LI receives support by PID2019-110810RB-I00/AEI/10.13039/501100011033 grant from the Spanish Ministry of Science & Innovation. MPA is supported by a FI Fellowship from the Generalitat de Catalunya supported by Secretaria d'Universitats i Recerca de la Generalitat de Catalunya and Fons Social Europeu (2021 FI_B 00470) and AF is supported by a FPU Fellowship from the Spanish Ministry of Universities (FPU20-04484). TK is funded by the CIMF and TüCAD2. CIMF and TüCAD2 are funded by the Federal Ministry of Education and Research (BMBF) and the Baden-Württemberg Ministry of Science as part of the Excellence Strategy of the German Federal and State Governments.",True,False,False acknowledgement,10.48550/arxiv.1412.7513,doi10.48550/arxiv.1412.7513,"algorithms. HOJ is supported by the European Research Council Advanced Grant 267382 FCCA. SS is supported by the Danish Council for Independent Research with the project ""Image Based Quantification of Anatomical Change"".",True,False,False acknowledgement,10.26434/chemrxiv.14134595.v1,doi10.26434/chemrxiv.14134595.v1,"The authors gratefully acknowledge financial support by the Academy of Finland (Grant No. 316893) and the European Research Council (ERC Starting Grant Project PHOTOTUNE, Decision number 679646).",True,False,False acknowledgement,10.48550/arxiv.2210.14339,doi10.48550/arxiv.2210.14339,"We thank Angela Chen, Dragan Huterer, Julien Lesgourgues, and Meng-Xiang Lin for useful conversations. JCH acknowledges support from NSF grant AST-2108536, NASA grant 21-ATP21-0129, the Sloan Foundation, and the Simons Foundation. We thank the Scientific Computing Core staff at the Flatiron Institute for computational support. The Flatiron Institute is supported by the Simons Foundation.",True,False,False acknowledgement,10.1101/2021.07.18.452859,doi10.1101/2021.07.18.452859,"This work was supported by MEXT/JSPS KAKENHI Grant Numbers JP19F193830 to Y.F., JP14J01649 to R.T., JP18H05007 and JP21H02596 to I.F., JP19H03335 to K.I., and JP19H05467 to M.T., by AMED Grant Numbers JP21dm0107146 to T.M., JP20dm0307021 to K.I., and JP21dm0207077 to M.T., and by JST Grant Number JPMJCR1683 to K.I.",True,True,False acknowledgement,10.48550/arxiv.2407.11206,doi10.48550/arxiv.2407.11206,"We dedicate this paper to Sean Haney. Perhaps the only thing Sean loved more than surface waves was debating their finer details with friends, usually after surf sessions. Sean provided many useful discussions on this topic prior to his untimely passing in 2021. Be careful, Sean. We also thank an anonymous referee for useful comments that have improved the manuscript. We thank Aidan Blaser and T.S. van den Bremer for helpful comments. N.P. was partially supported by NSF OCE-2219752 and 2342714 and by NASA 80NSSC19K1037 (S-MODE) and 80NSSC23K0985 (OVWST).",True,False,False acknowledgement,10.21203/rs.3.rs-1545056/v2,doi10.21203/rs.3.rs-1545056/v2,"This study was funded by the National Research Council of Thailand (NRCT), the Health Systems Research Institute (HSRI), the Center of Excellence in Clinical Virology at Chulalongkorn University, King Chulalongkorn Memorial Hospital, and the Rachadapisek Sompote Fund of Chulalongkorn University for postdoctoral fellowships to Jiratchaya Puenpa.",True,False,False acknowledgement,10.48550/arxiv.1809.08502,doi10.48550/arxiv.1809.08502,"Key words and phrases. Ricci flow, steady Ricci solitons, rotational symmetry. *Partially supported by the NSFC 11701030, **by the NSFC 11331001 and 11771019.",True,False,False acknowledgement,10.21203/rs.3.rs-379636/v1,doi10.21203/rs.3.rs-379636/v1,This research is partially funded by the Radboud AI for Health collaboration between Radboud University and the Innovation Center for Artificial Intelligence (ICAI) of the Radboud University Nijmegen Medical Centre.,True,False,False acknowledgement,10.21203/rs.3.rs-4182220/v1,doi10.21203/rs.3.rs-4182220/v1,"This work was supported by the Anhui Provincial Natural Science Foundation (No. 2022AH052316, GXXT-2022-002).",True,False,False acknowledgement,10.1101/2022.11.25.517964,doi10.1101/2022.11.25.517964,"This study was funded by the European Union (ERA PerMed JTC2019 ""PerBrain"", grant to JDS) and the Canada Excellence Research Chairs (CERC) program (Grant No. 215063 to AMO). BT received a PhD grant from French Ministry of Higher Education and Ecole Normale Supérieur. AMO is a Fellow of the CIFAR Brain, Mind, and Consciousness program. Authors would like to thank Garance Merholz for her feedback on the manuscript and Esteban Munoz Musat for helpful discussions.",True,False,True acknowledgement,10.21203/rs.3.rs-527024/v1,doi10.21203/rs.3.rs-527024/v1,"This work was supported by the National Institutes of Health (R01ES024516 and R01ES032290 to ZY), the National Natural Science Foundation of China (Grant No. 91643205 to HK and Grant No. 82003414 and No. 81770805 to YX) and the National Key Research and Development Program of China (2019YFC1804503 to YX). All the funding bodies were not involved in the design of the study and collection, analysis, and interpretation of data and in writing the manuscript.",True,True,False acknowledgement,10.1101/2022.10.25.22281505,doi10.1101/2022.10.25.22281505,Funding. This work was funded by internal funding at QUEST Center for Responsible Research.,True,False,False acknowledgement,10.48550/arxiv.math/9310219,doi10.48550/arxiv.math/9310219,*Research partially supported by NSF grant DMS 9203659 and grants from SERC.,True,False,False acknowledgement,10.21203/rs.3.rs-3490152/v1,doi10.21203/rs.3.rs-3490152/v1,"This research received financial support from Infectious and Tropical Diseases Research Center, Health Research Institute, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran, as code number OG-0011. Special thanks to Dr. Bita Javan for her efforts. | This research received financial support from Infectious and Tropical Diseases Research Center, Health Research Institute as code number OG-0011.",True,False,True acknowledgement,10.48550/arxiv.2308.15022,doi10.48550/arxiv.2308.15022,This work is supported by the National Natural Science Foundation of China (No.U2336202).,True,False,False acknowledgement,10.1101/819672,doi10.1101/819672,This work was supported by the National Institutes of Health [R00GM119173 to S.W.]; and start-up funds from the University at Buffalo College of Arts and Sciences.,True,False,False acknowledgement,10.1101/2024.03.20.24304585,doi10.1101/2024.03.20.24304585,"This project was funded by the Centers for Disease Control and Prevention (CDC), National Center for HIV, Viral Hepatitis, STD, and TB Prevention Epidemiologic and Economic Modeling Agreement (NEEMA; #1NU38PS004651). We thank Maryam Haddad, Andrew Hill, Teresa Puente, Stephanie Su, and Cindy Imai for assistance with this analysis.",True,False,False acknowledgement,10.48550/arxiv.cond-mat/0606538,doi10.48550/arxiv.cond-mat/0606538,"We have benefited from substantial exchange of information with J. S. Schilling, and help with computer codes from D. Kasinathan. Z.P.Y. and W.E.P. were supported by National Science Foundation Grant No. DMR-0421810. S.Y.S. acknowledges support from National Science Foundation Grants DMR-0608283 and DMR-0604531. W.E.P. is grateful for support from the Alexander von Humboldt Foundation, and the hospitality of IFW Dresden, during the preparation of this manuscript.",True,False,False acknowledgement,10.21203/rs.3.rs-3578300/v1,doi10.21203/rs.3.rs-3578300/v1,"SG and OP were supported by funding from the University of Zurich. BM was supported by funding from Eawag, SNF (grant no. 310030-207910).",True,False,False acknowledgement,10.26434/chemrxiv-2021-f2r25,doi10.26434/chemrxiv-2021-f2r25,"The work is funded by Foundation for Fundamental Research on Matter (FOM), part of the Netherlands Organisation for Scientific Research (NWO) and Shell Global Solutions International B.V as a part of Computational sciences for energy research programme. Authors also acknowledge SURF Cooperative for the computer resources provided for the calculations.",True,False,False acknowledgement,10.48550/arxiv.2111.11591,doi10.48550/arxiv.2111.11591,"Acknowledgement Y.-G. Jiang was sponsored in part by ""Shuguang Program"" supported by Shanghai Education Development Foundation and Shanghai Municipal Education Commission (No. 20SG01). Z. Wu was supported by NSFC under Grant No. 62102092.",True,False,False acknowledgement,10.1101/2024.05.05.592627,doi10.1101/2024.05.05.592627,"This project has been supported by the National Natural Science Foundation of China (grants 32370821, 32170821, and 92153301 to K.Y), National Key Research and Development Program of China (2021YFC2701200), and Department of Science \& Technology of Hunan Province (grants 2023RC1028 and 2023SK2091 to K.Y).",True,False,False acknowledgement,10.48550/arxiv.2407.09159,doi10.48550/arxiv.2407.09159,"COFUND BoostUrCAreer program received funding from the European Union's Horizon 2020 under Marie Curie grant agreement No 847581. This work is also supported by the French government, through the ACTIVIS project managed by the National Research Agency (ANR) with the reference number ANR-19-CE19-0004.",True,False,False acknowledgement,10.48550/arxiv.2307.13519,doi10.48550/arxiv.2307.13519,"Funding The authors are supported by the NWO VIDI project ""CHORPE"", NWO VI.Vidi.193.075.",True,False,False acknowledgement,10.1101/2020.02.08.940163,doi10.1101/2020.02.08.940163,"This study was funded in part by USPHS grant R01DE017989 and research funds generously provided by the University of Minnesota School of Dentistry, which is gratefully acknowledged. | The mouse strain used for this research project was generated by the trans-NIH Knock-Out Mouse Project (KOMP) and obtained from the KOMP Repository (www.komp.org). NIH grants to Velocigene at Regeneron Inc (U01HG004085) and the CSD Consortium (U01HG004080) funded the generation of gene-targeted ES cells for 8500 genes in the KOMP Program. These resources are archived and distributed by the KOMP Repository at UC Davis and CHORI (U42RR024244).",True,True,False acknowledgement,10.48550/arxiv.2408.13626,doi10.48550/arxiv.2408.13626,"Research at the Netherlands Cancer Institute is supported by grants from the Dutch Cancer Society and the Dutch Ministry of Health, Welfare and Sport. This work is financed by National Funds through the FCT - Fundação para a Ciência e a Tecnologia, I.P. (Portuguese Foundation for Science and Technology) within the project CAGING, with reference 2022.10486.PTDC (DOI 10.54499/2022.10486.PTDC). The authors would like to acknowledge the Research High Performance Computing (RHPC) facility of the Netherlands Cancer Institute (NKI).",True,False,False acknowledgement,10.21203/rs.3.rs-1805970/v1,doi10.21203/rs.3.rs-1805970/v1,"This work was supported by National Institute of Health (NIH) National Heart, Lung and Blood Institute award R01HL148672 (JSB/BM) and NIH National Institute of Allergy and Infectious Diseases training grant T32AI95190-10 (SJG).",True,False,False acknowledgement,10.48550/arxiv.1712.03571,doi10.48550/arxiv.1712.03571,"I should express my gratitude to Roman Romanov, who introduced this problem for me and helped me with solving the problem and writing the column. The work was supported by the RSF Grant RSF 17-11-01064.",True,False,False acknowledgement,10.26434/chemrxiv-2024-pdbsm-v2,doi10.26434/chemrxiv-2024-pdbsm-v2,European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (grant agreement No. 715060). ENW-XS grant (grant number: OCENW.XS21.4.038) from the Dutch Research Council (NWO). | The authors thank for financial support the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (grant agreement No. 715060). P.M.P.-G. acknowledges funding from an ENW-XS grant (grant number: OCENW.XS21.4.038) from the Dutch Research Council (NWO). C.F.G. and P.V. acknowledge the Netherlands Organization for Scientific Research (NWO). This work made use of the Dutch national e-infrastructure with the support of the SURF Cooperative using grant no. EINF-3520.,True,False,False acknowledgement,10.1101/859280,doi10.1101/859280,"This research has received funding from Ministerio de Ciencia, Innovación y Universidades (MICIU), Agencia Estatal de Investigación (AEI) and Fondo Europeo de Desarrollo Regional, UE (RTI2018- 100789-B-I00); and the Catalan Government [SGR2017/801 and #016FI_B 00272 to CR-A]. JG is funded by the European Commission (H2020-ERC-2014-CoG-647900) and the MINECO/AEI/FEDER, EU (BFU2017-82937-P). LAPJ lab was funded by the Spanish Ministry of Science and Innovation (ISCIII-FEDER P13/02481), the Catalan Department of Economy and Knowledge (SGR2014/1468, SGR2017/1974 and ICREA Acadèmia), and also acknowledges support from the Spanish Ministry of Economy and Competiveness ""Programa de Excelencia María de Maeztu"" (MDM-2014-0370). This research has been conducted using the UK Biobank Resource under Application Number 43983. The Genotype-Tissue Expression (GTEx) Project was supported by the Common Fund of the Office of the Director of the National Institutes of Health, and by NCI, NHGRI, NHLBI, NIDA, NIMH, and NINDS.",True,False,False acknowledgement,10.22541/essoar.171320253.37867733/v1,doi10.22541/essoar.171320253.37867733/v1,"R.L. acknowledges funding from French state aid, managed by ANR under the ""Investissements d'avenir"" programme (ANR-16-CONV-0003) and from EU's Horizon Europe Research and Innovation Programme under Grant Agreement No. 101060423. A.B. was funded by the European Union (ERC StG, ForExD, grant agreement No. 101039567). Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. AMRP, MJM, RMA, MJS, GJN, PC were supported by the European Commission, Horizon 2020 Framework Programme (VERIFY, grant no. 776810), AMRP, MJM, RMA by grant agreement no. 958927 (CoCO2), AMRP by grant agreement no. 101081322 (AVENGERS) and RMA, PC and PP by grant agreement no. 10108139 (EYE-CLIMA). P.K.P. is partly supported by the Environmental Research and Technology Development Fund (JPMEERF21S20800) of the MOEJ and ERCA. G.F. was supported by the Horizon Europe Project ECO2ADAPT (grant agreement No. 101059498). MJS and GJN were partly funded by Ministry Agriculture, Nature Management and Food Quality in | Netherlands and its Knowledge Bases programme. GJN acknowledges RESONATE project (H2020 Grant 101000574) and the Horizon Europe Project SUPERB (grant 101036849) and FORWARDS (grant 101084481). For the aggregated national forest inventory data behind the EFISCEN simulations MJS and GJN acknowledge the national forest inventories of 27 EU countries, CW was funded by the Natural Environment Research Council through its grants to the UK National Centre for Earth Observation (NCEO; NERC grant numbers NE/R016518/1 and NE/N018079/1). CTE2021 runs were supported by the HPC cluster Aether at the University of Bremen, financed by DFG within the scope of the Excellence Initiative. PR acknowledges funding from the FRS-FRNS PDR project T.0191.23 CH4-lakes.",True,True,False acknowledgement,10.48550/arxiv.math/0508168,doi10.48550/arxiv.math/0508168,The second author is supported by Netherlands Organisation for Scientific Research (NWO) under project number 613.006.572.,True,False,False acknowledgement,10.48550/arxiv.2112.07873,doi10.48550/arxiv.2112.07873,"This work was supported in part by the Natural Science Foundation of China under Grant 62072421, 62102386, 62002334, 62121002, and U20B2047, Anhui Science Foundation of China under Grant 2008085QF296, Exploration Fund Project of University of Science and Technology of China under Grant YD3480002001, and by Fundamental Research Funds for the Central Universities under Grant WK2100000011 and WK5290000001.",True,True,False acknowledgement,10.48550/arxiv.2009.00518,doi10.48550/arxiv.2009.00518,"This work was not directly supported by any funding agency, but it would not have been possible without resources provided by the Department of Physics at the University of Illinois at Urbana-Champaign.",True,False,False acknowledgement,10.48550/arxiv.2207.05615,doi10.48550/arxiv.2207.05615,"This work has received support from Agence Nationale de la Recherche (ANR) for the project APY, with reference ANR-20CE38-0011-02. This work was granted access to the HPC resources of IDRIS under the allocation 2022-AD011012603 made by GENCI Code is available at https://github.com/Nicolas1203/ossgcl",True,False,True acknowledgement,10.1101/611269,doi10.1101/611269,We would like to thank Virgilio L. Lew and Pietro Cicuta from the University of Cambridge for insightful and fruitful discussions. S.H. acknowledges support by the International Helmholtz Research School of Biophysics and Soft Matter (IHRS BioSoft). D.A.F. acknowledges funding by the Alexander von Humboldt Foundation. We also gratefully acknowledge the computing time granted through JARA-HPC on the supercomputer JURECA (30) at Forschungszentrum Jülich.,True,False,False acknowledgement,10.48550/arxiv.1612.06523,doi10.48550/arxiv.1612.06523,"The second author was partially supported by PAPIIT IA103915 and CONACyT project 219775. The third author was partially supported by PAPIIT IN114016 and CONACyT project 219827. Finally, we would like to acknowledge the support from Center of Innovation in Mathematics, CINNMA A.C.",True,False,False acknowledgement,10.1101/2020.11.23.20236778,doi10.1101/2020.11.23.20236778,"We would like to thank colleagues who helped collating data and coordinating activities (Paulina Dluzynska and Nichole Jeffries) as well as colleagues in the departments of colorectal surgery, gastroenterology, radiology and biochemistry at the Western General Hospital, Edinburgh as well as colleagues in primary care for their help in triaging patients and timely reporting of results. MGD is funded by CRUK and MRC. FVND is funded by the Chief Scientist Office.",True,False,False acknowledgement,10.48550/arxiv.1807.07951,doi10.48550/arxiv.1807.07951,DMF acknowledges support from FAPESP grant 2016/16844-1.,True,False,False acknowledgement,10.48550/arxiv.1012.1621,doi10.48550/arxiv.1012.1621,"This work has been funded by the project PCI-EUROMED A/016116/08, P07-TIC- 02978 (Junta de Andalucía), and TIN2008-04844 (Spanish Ministry of Science and Innovation).",True,False,False acknowledgement,10.21203/rs.2.18594/v2,doi10.21203/rs.2.18594/v2,Funding: This research was supported by Basic Science Research Program through the National Research Foundation of Korea(NRF) funded by the Ministry of Education(NRF-2018R1D1A1A02086025). No benefits in any form have been received or will be received from a commercial party related directly or indirectly to the subject of this article.,True,False,False acknowledgement,10.1101/840603,doi10.1101/840603,"We are grateful for financial support from the National Science Foundation, including MCB grant number 1150138 to J.J.S. and Graduate Research Fellowships to A.M.J. and J.T.A. Additionally, this work was supported by Office of Naval Research grant N00014-17-1-2639 (to J.J.S.). AMJ was partially funded by a training fellowship from the Keck Center of the Gulf Coast Consortia, on the Houston Area Molecular Biophysics Program, National Institute of General Medical Sciences (NIGMS) T32GM008280. JTA was partially supported by a Lodieska Stockbridge Vaughn Fellowship.",True,False,False acknowledgement,10.1101/2022.11.08.515655,doi10.1101/2022.11.08.515655,"This work is supported by National Natural Science Foundation of China (Grant No. 32070973, 31871481), Fundamental Research Funds for the Central Universities (Program No. 2662022JC002). | Funder Grant reference number Author National Natural Science Foundation of China 32070973 Zhiqiang Dong National Natural Science Foundation of China 31871481 Zhiqiang Dong Fundamental Research Funds for the Central Universities 2662022JC002 Zhiqiang Dong",True,False,False acknowledgement,10.1101/2021.01.06.425363,doi10.1101/2021.01.06.425363,"This work was supported by Decit/SCTIE/BrMoH/CNPq (440685/2016-8), by CAPES (88887.130716/2016-00) and by the European Union’s Horizon 2020 Research and Innovation Programme under ZIKAlliance Grant Agreement no. 734548. MG and LCJA is supported by Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ). JL is supported by a lectureship from the Department of Zoology, University of Oxford.",True,False,False acknowledgement,10.1101/2021.01.28.21250676,doi10.1101/2021.01.28.21250676,"CJC and SJR were supported by funding to the Viral Emergence Research Initiative (VERENA) consortium including NSF BII 2021909. CAL, HDG, and SJR were funded by NIH 1R01AI136035-01. ALW and SJR were additionally funded by CDC grant 1U01CK000510-01: Southeastern Regional Center of Excellence in Vector-Borne Diseases: The Gateway Program. This publication was supported by the Cooperative Agreement Number above from the Centers for Disease Control and Prevention. Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the Centers for Disease Control and Prevention.",True,False,False acknowledgement,10.26434/chemrxiv-2021-dfx2w,doi10.26434/chemrxiv-2021-dfx2w,"The authors acknowledge funding from ExxonMobil Research and Engineering. H.J.K. holds a Career Award at the Scientific Interface from the Burroughs Wellcome Fund and an AAAS Marion Milligan Mason Award, which supported this work.",True,False,False acknowledgement,10.48550/arxiv.1801.00881,doi10.48550/arxiv.1801.00881,"Acknowledgments This work is supported by the Beijing Municipal Science and Technology Commission (Grant No. Z161100000216144) and National Natural Science Foundation of China (Grant No. 61427811, 61573360). Special thanks to Dangwei Li and Yunfan Liu who support our experiments.",True,False,False acknowledgement,10.1101/2022.08.26.505435,doi10.1101/2022.08.26.505435,"The work described in this article was supported by the following funds: K22AI143963 (NL) and Development Funds from the University of Alabama at Birmingham (NL). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.",True,False,False acknowledgement,10.48550/arxiv.1511.02207,doi10.48550/arxiv.1511.02207,The author M. Dai was partially supported by NSF grant DMS-1517583.,True,False,False acknowledgement,10.48550/arxiv.2301.13714,doi10.48550/arxiv.2301.13714,"We thank Chris Lucas for his contributions to this project when it was still in an early stage, Kenny Smith for his comments on the first draft of this paper, and Matthias Lindemann for excellent suggestions for the camera-ready version. VD is supported by the UKRI Centre for Doctoral Training in Natural Language Processing, funded by the UKRI (grant EP/S022481/1) and the University of Edinburgh, School of Informatics and School of Philosophy, Psychology & Language Sciences. IT acknowledges the support of the European Re- search Council (ERC StG BroadSem 678254) and the Dutch National Science Foundation (NWO Vidi 639.022.518).",True,False,False acknowledgement,10.48550/arxiv.2106.05190,doi10.48550/arxiv.2106.05190,"We want to thank the University of Science, Vietnam National University in Ho Chi Minh City, and AISIA Research Lab in Vietnam for supporting us throughout this paper. This research is funded by Vietnam National University Ho Chi Minh City (VNU-HCM) under grant number C2021-18-03.",True,False,False acknowledgement,10.1101/2023.01.02.522472,doi10.1101/2023.01.02.522472,"The study was funded by grants from the Danish Cancer Society (grant R204-A12359) and the Novo Nordisk Foundation (#NNF19OC0058262 to AS and SFP), the Carlsberg foundation (#CF19-0505 to AS and #CF20-0491 to SFP), and the Danish Council For Independent Research (#0134-00218B to SFP and DC). RI and JY were supported by the European Union (H2020-s MSCA-ITN-2018, grant #813834, to AS and SFP.",True,False,False acknowledgement,10.48550/arxiv.2212.13525,doi10.48550/arxiv.2212.13525,This project is supported by MOST under code MOST 110-2221-E-A49-144-MY3. Eugene Lee is partially supported by Novatek Ph.D. Fellowship Award. The authors are grate- ful for the suggestions provided by Dr. Eugene Wong from University of California in Berkeley and Dr. Jian-Ming Ho from Academia Sinica of Taiwan.,True,False,False acknowledgement,10.1101/2023.10.19.562943,doi10.1101/2023.10.19.562943,"We thank Steffi Gold for help in EM preparations and Markus Ganter for comments on the manuscript. We thank Katharina Röver for her help in parasitemia determination and performing genotyping PCRs. We thank Miriam Reinig and all students helping with the mosquito rearing. This project was funded by grants from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation): SPP 2225 ""Exit pathways of intracellular pathogens"" (FR2140/12-1), and DFG FR2140/10-1. MS received a visiting fellowship from the Carl Duisberg foundation. AB is a member of the Heidelberg Biosciences International Graduate School (HBIGS). LH is a member of the Molecular Biotechnology Master program, LPD is a member of the Heidelberg Biosciences Infectious Disease Master Program, MA was a member of the Heidelberg Bioscience Molecular and Cellular Biology Master Program. We acknowledge the microscopy support from the Infectious Diseases Imaging Platform (IDIP) at the Center for Integrative Infectious Disease Research and are grateful for the generous use of the microscopes at the Electron Microscopy Core Facility (EMCF) of Heidelberg University. The Plasmodium database PlasmoDB facilitated this work.",True,True,False acknowledgement,10.1364/opticaopen.24718050.v1,doi10.1364/opticaopen.24718050.v1,"Funding. Fonds De La Recherche Scientifique - FNRS; Horizon 2020 Framework Programme (801505); Ministerio de Ciencia e Innovación (PID2021-122711NB-C21). | Acknowledgments. S.W.J. has received funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No 801505. This work has been partially supported by the Spanish Ministry of Science and Innovation, Gobierno de España, under Contract No. PID2021-122711NB-C21.",True,False,False acknowledgement,10.21203/rs.3.rs-1065059/v1,doi10.21203/rs.3.rs-1065059/v1,"This work was supported by the U.S. National Library of Medicine [grant number: T15LM012502]. The Cancer Prevention, Survivorship and Prevention ECHO, a program of the IUPUI ECHO Center at the Indiana University Richard M. Fairbanks School of Public Health, described in this study received funding from Indiana Cancer Consortium, and in-kind support from the Indiana Department of Health, specifically the Division of Chronic Disease, Primary Care, Rural Health, the Indiana Immunization Coalition, Riley Children’s Hospital, American Cancer Society, and the Indiana Clinical and Translational Sciences Institute. The authors wish to thank all the study participants who dedicated their time and efforts during the pandemic to this project. Your feedback is an inspiration. We also want to thank the Cancer ECHO hub team members, IUPUI ECHO Center, Harold Kooreman, Dr. John Agley, and the researchers who are evaluating the other IUPUI ECHO programs that generously gave of their insights.",True,False,False acknowledgement,10.21203/rs.3.rs-1719811/v1,doi10.21203/rs.3.rs-1719811/v1,Research for this publication was funded by National Cancer Institute (Argentina) - Asistencia Financiera a Proyectos de Investigación en Cáncer de Origen Nacional IV. | The study was funded by the by National Cancer Institute (Argentina) - Asistencia Financiera a Proyectos de Investigación en Cáncer de Origen Nacional IV.,True,False,False acknowledgement,10.48550/arxiv.2302.06142,doi10.48550/arxiv.2302.06142,"This work was supported in part by funding from the Food Agility Co-operative Research Centre (CRC), funded under the Australian Commonwealth Government Co-operative Research Centre program, and in part by Charles Sturt University, AgriFutures Australia and Ricegrowers Ltd. One of us (AC) would like to acknowledge the receipt of a postgraduate research scholarship from Food Agility CRC.",True,False,False acknowledgement,10.1101/2020.11.13.380972,doi10.1101/2020.11.13.380972,"- Acknowledgements: This study was supported by the Norwegian ExtraFoundation for Health and Rehabilitation (2015/FO5146), the Research Council of Norway (249795, 262372), the South□Eastern Norway Regional Health Authority (2014097, 2015044, 2015073, 2018037), the European Research Council under the European Union's Horizon 2020 research and Innovation program (ERC StG Grant 802998), and the Department of Psychology, University of Oslo.",True,False,False acknowledgement,10.1101/2023.03.30.534737,doi10.1101/2023.03.30.534737,"This research was supported by funding from the National Institutes of Health R01HL142788 to M.T. and C.L., and R01HL16398 to M.T. In addition, support from the University of Pittsburgh Center for Research Computing, RRID:SCR_022735, and for the HTC cluster, which is supported by NIH award number S10OD028483. Genomics resources was provided through the University of Pittsburgh HSCRF Genomics Research Core, RRID: SCR_018301, for the RNA-seq experiments.",True,True,False acknowledgement,10.48550/arxiv.2004.14718,doi10.48550/arxiv.2004.14718,This work was supported by JST ERATO Grant Number JPMJER1903 and JSPS KAKENHI Grant Number JP18K11155.,True,False,False dataset,10.34133_2022_9870149,doi10.34133_2022_9870149,Code Availability. The source codes for our CS framework are available at https://github.com/bianzhiyu/ContinuityScaling.,False,True,True dataset,10.1088_1361-6501_ad180c,doi10.1088_1361-6501_ad180c,Data availability statementThe data cannot be made publicly available upon publication because they are owned by a third party and the terms of use prevent public distribution. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1038_s41467-022-30406-4,doi10.1038_s41467-022-30406-4,"Data availability The cryo-EM particle stacks, maps and models generated in this study have been deposited in EMPIAR image archive, EMDB database and the Protein Data Bank, respectively, under accession codes EMPIAR-10969, EMD-25757 and PDB-7T9G) for VcINDY-Na+ (300 mM) structure and under accession codes EMPIAR-10970, EMD-25756 and PDB-7T9F) for VcINDY-Ch+ structure. Source Data for Fig. 4 are available with the paper.",False,True,True dataset,10.1088_1361-6595_ad03bd,doi10.1088_1361-6595_ad03bd,Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1265_ehpm.22-00245,doi10.1265_ehpm.22-00245,Availability of data and material The datasets generated and/or analyzed during the current study are not publicly available because the study involves human participants with a nondisclosure provision of individual data stated in the written informed consent in order to prevent compromise of study participants’ privacy but are available from the corresponding author upon reasonable request.,False,True,False dataset,10.1088_1402-4896_ad0bb9,doi10.1088_1402-4896_ad0bb9,Data availability statementThe data cannot be made publicly available upon publication because they are owned by a third party and the terms of use prevent public distribution. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1016_j.isci.2020.100959,doi10.1016_j.isci.2020.100959,DATA AND CODE AVAILABILITY RNA-seq data have been deposited in NCBI’s Gene Expression Omnibus (GEO). The accession number for the RNA-seq data reported in this paper is GEO: GSE145495.,False,True,True dataset,10.7554_elife.85878,doi10.7554_elife.85878,"Data availabilityAll data generated or analyzed in this study are included in the manuscript and supporting files. Source data files have been provided for Figure 1b, Figure 1c, Figure 1f, Figure 1g, Figure 1-figure supplement 2a-c, Figure 2b, Figure 2g, Figure 2-figure supplement 1a-f, Figure 3a, Figure 3c, Figure 3e, Figure 3h, Figure 3 supplement 1b-c, Figure 4a, Figure 4b, Figure 4e, Figure 4f, Figure 4h, Figure 4i, Figure 4-figure supplement 1a-b, Figure 4-figure supplement 2a, Figure 5b.",False,True,False dataset,10.1371_journal.pntd.0009424,doi10.1371_journal.pntd.0009424,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.7554_elife.85521,doi10.7554_elife.85521,"Data availability Figure 3—source data 1, Figure 5—source data 1, Figure 6—source data 1, and Figure 7—source data 1 contain the numerical and statistical data used to generate the figures. The confocal imaging dataset is available at Brain Image Library under DOI https://doi.org/10.35077/g.933.",False,True,False dataset,10.1371_journal.pone.0258085,doi10.1371_journal.pone.0258085,"Data Availability Statement Due to legal and participants confidentiality, data will only be available upon request. The data underlying the results presented in the study are available from Shenzhen Luohu Disease Prevention and Control Center via contacting Weihong Chen, director of Shenzhen Luohu Disease Prevention and Control Center, at 1433529760@qq.com.",False,True,False dataset,10.1371_journal.ppat.1011871,doi10.1371_journal.ppat.1011871,Data Availability Statement: Raw and processed RNA-sequencing data can be accessed from the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database under accession number GSE212205.,True,True,False dataset,10.1371_journal.pcbi.1011196,doi10.1371_journal.pcbi.1011196,Data Availability Statement Data can be found in the following doi: https://doi.org/10.6084/m9.figshare.21938651.v1.,False,True,False dataset,10.1126_sciadv.adf9336,doi10.1126_sciadv.adf9336,Data and materials availability: All DNA constructs (table S2) and cell lines (table S3) are available from M.B.E. or through the Addgene repository under a material transfer agreement with California Institute of Technology. All data generated and all the computational and data analysis and modeling codes used in the current study are available at data.caltech.edu/records/0sdrn-73r13. All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials.,True,True,True dataset,10.1088_1361-6579_ad0f70,doi10.1088_1361-6579_ad0f70,Data availability statementThe data cannot be made publicly available upon publication because they contain commercially sensitive information. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1093_molbev_msad069,doi10.1093_molbev_msad069,Data availability No new data were generated in support of this research. TE models were deposited in the DFAM database.,False,True,False dataset,10.1088_2752-5295_acf4b5,doi10.1088_2752-5295_acf4b5,Data availability statementThe data that support the findings of this study are openly available in the Harvard Dataverse at https://doi.org/10.7910/DVN/2UT4GM (Hauer 2023).,False,True,False dataset,10.1371_journal.pbio.3000080,doi10.1371_journal.pbio.3000080,"Data Availability Statement The data for individual figures are available as Excel files (labeled, e.g., S1 Data) with links in the relevant figure captions. The full listing of these data files can be found following the captions for supplementary figures, as well as in the Excel file DataFileListings.xlsx. In addition, the full data are available. The corresponding author (Aniruddha Das) will maintain the data at Columbia University until publication. Once published, all datasets will be shared openly with qualified scientists. Access will be granted by request to the corresponding author. It will be our intent to collaborate with individuals who contact us about sharing the data. But if that is not possible or does not make sense, then we will simply provide the data to them. Because of the large size of the optical imaging and electrode recording data, it might not be possible to keep it online. Hence, it will also be distributed (upon request) as a DVD box set for a nominal fee (sufficient to cover the costs of the DVDs, the time for a lab technician to burn the discs, and shipping expenses).",False,True,True dataset,10.1088_2632-2153_ad0e17,doi10.1088_2632-2153_ad0e17,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1186_s12875-019-0972-1,doi10.1186_s12875-019-0972-1,Availability of data and materials Table 1 provides a list of the 26 included papers and Additional file 1 shows the database search strategy.,False,True,False dataset,10.1186_s13059-023-02963-4,doi10.1186_s13059-023-02963-4,"Availability of data and materials The results published here are in part based upon data generated by the TCGA Research Network (https://www.cancer.gov/tcga), METABRIC (https://ega-archive.org/studies/EGAS00000000083), MSK-IMPACT (https://www.mskcc.org/msk-impact) or deposited at cBioPortal (https://www.cbioportal.org/). The following expression datasets from the Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/) have also been employed: GSE114012 [48], GSE131594 [45], GSE137912 [12], GSE152699 [49], GSE75367 [47], GSE83142 [46], GSE93991 [44], GSE134836 [13], GSE134838 [13], GSE134839 [13], GSE124854 [93], GSE135215 [94], GSE99116 [93], GSE178839 [149], GSE149224 [100], GSE139944 [102], GSE191127 [150], GSE109211 [151], GSE50509 [152], GSE65185 [153], GSE66399 [154], GSE68871 [155] and GSE99898 [156]. The GEO datasets employed in the analyses are summarised in Additional file 1: Tables S2 and S3. All codes developed for the purpose of this study can be found at the following repository, released under a GNU General Public License v3.0 at github: https://github.com/secrierlab/CancerG0Arrest [157] and Zenodo (doi: 10.5281/zenodo.7840672) [158].",True,True,True dataset,10.1371_journal.pone.0261071,doi10.1371_journal.pone.0261071,Data Availability Statement Data are available from the Zenodo database (DOI: 10.5281/zenodo.5774499).,True,True,False dataset,10.1186_s12866-023-02901-1,doi10.1186_s12866-023-02901-1,Data AvailabilityRaw sequences from this study are available and were deposited in the European Nucleotide Archive (ENA) with bio project accession PRJEB56537 in the ENA bio project database: https://www.ebi.ac.uk/ena/browser/view/PRJEB56537.,True,True,True dataset,10.1371_journal.pone.0244053,doi10.1371_journal.pone.0244053,Data Availability Statement The data are accessible via Dataverse (https://doi.org/10.7910/DVN/8ZVOKW).,False,True,False dataset,10.1371_journal.pone.0250044,doi10.1371_journal.pone.0250044,"Data Availability Statement Data are available here: Wall, Kristin, 2021, ""Replication Data for: ""Etiologies of genital inflammation and ulceration in symptomatic Rwandan men and women responding to radio promotions of free screening and treatment services"""", https://doi.org/10.7910/DVN/CFX6UU, Harvard Dataverse.",False,True,False dataset,10.1126_sciadv.abn5709,doi10.1126_sciadv.abn5709,Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. Code for analyzing mechano-NPS data is archived at Zenodo (https://doi.org/10.5281/zenodo.7884859). Requests for strain CA846 can be submitted through the Caenorhabditis Genetics Center at https://cgc.umn.edu/strain/WH257. Strain CA1728 [mjl-1(tm1651)] can be requested from the National Bioresource Project (https://shigen.nig.ac.jp/c.elegans/). Requests for strains generated in this study should be submitted to C.L. or A.F.D.,True,True,True dataset,10.1126_sciadv.ade1817,doi10.1126_sciadv.ade1817,Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. All transcriptome data are available at the Gene Expression Omnibus (GEO) repository under the accession number GSE198939. Raw data from all experiments are available at zenodo.org under the following DOI: 10.5281/zenodo.7654968. All strains are available at CGC under https://cgc.umn.edu/.,True,True,True dataset,10.1073_pnas.2301985120,doi10.1073_pnas.2301985120,"Data, Materials, and Software Availability Cryo-EM density maps of the KCNQ1 channel with the voltage sensor in the up, intermediate, and down conformation have been deposited in the electron microscopy data bank under accession codes EMD-40508 (70), EMD-40509 (71), and EMD-40510 (72), respectively. Atomic coordinates of the KCNQ1 channel with the voltage sensor in the up, intermediate, and down conformation have been deposited in the protein data bank under accession codes 8SIK (73), 8SIM (74), and 8SIN (75), respectively.",False,True,True dataset,10.1002_advs.202200181,doi10.1002_advs.202200181,Data Availability Statement The data that support the findings of this study are available from the cor- responding authors upon reasonable request.,True,True,False dataset,10.1371_journal.pone.0257328,doi10.1371_journal.pone.0257328,"Data Availability Statement LANYERO, HINDUM (2021), Validity of caregivers’ reports on prior use of antibacterials in children under five years presenting to health facilities in Gulu, northern Uganda, Dryad, Dataset, https://doi.org/10.5061/dryad.sj3tx9642.",False,True,False dataset,10.3389_fpsyt.2022.1086038,doi10.3389_fpsyt.2022.1086038,Data availability statement The datasets presented in this article are not readily available because ethics approval did not include public data sharing. Requests to access the datasets should be directed to the corresponding author.,False,True,False dataset,10,doi10,Data Availability Statement: The code and data underlying this article will be shared on reasonable request to the corresponding author.,False,True,True dataset,10.1371_journal.ppat.1010103,doi10.1371_journal.ppat.1010103,Data Availability Statement The RNA-seq datasets generated during this study are available at Bioproject accession number PRJNA742496 in the NCBI Bioproject database (http://www.ncbi.nlm.nih.gov/bioproject/742496).,False,True,False dataset,10.1186_s12874-023-01902-y,doi10.1186_s12874-023-01902-y,Data AvailabilityWe provide R modules as the basis for the dashboard development on GitHub (https://github.com/CTU-Basel/viewTrial). Qualitative data that supported the development of the risk assessment and study dashboard is provided in the supplementary material.,True,True,True dataset,10.1093_nar_gkad331,doi10.1093_nar_gkad331,DATA AVAILABILITY The online resource is available without restriction at https://www.flyrnai.org/tools/pangea/.,False,True,False dataset,10.1371_journal.pbio.3002453,doi10.1371_journal.pbio.3002453,Data Availability Statement: All data supporting the findings of this manuscript are available on the Open Science Framework at osf.io/3kyvw.,False,True,True dataset,10.1186_s12874-019-0884-8,doi10.1186_s12874-019-0884-8,Availability of data and materials Restrictions by the data custodians mean that the datasets are not publicly available or able to be provided by the authors. Researchers wanting to access the datasets used in this study should refer to the Centre for Health Record Linkage application process (www.cherel.org.au/apply-for-linked-data).,False,True,False dataset,10.1371_journal.pone.0229895,doi10.1371_journal.pone.0229895,Data Availability Statement All relevant data are within the manuscript.,False,True,False dataset,10.1088_1361-6579_ad0426,doi10.1088_1361-6579_ad0426,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1007_s00122-023-04372-4,doi10.1007_s00122-023-04372-4,"Data availabilityElectronic supplementary material The online version of this article (https://doi.org/xxxxx) contains supplementary material, which is available to authorized users.",True,True,False dataset,10.1371_journal.pone.0227230,doi10.1371_journal.pone.0227230,Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1088_2634-4386_ad046d,doi10.1088_2634-4386_ad046d,Data availability statementThe data that support the findings of this study are openly available (Kaiser et al 2023). The experiment code is available on https://github.com/electronicvisions/model-paper-mc-sbi.,False,True,True dataset,10.3390_math10224246,doi10.3390_math10224246,Data Availability Statement: Data sharing is not applicable to this article as no datasets were generated or analyzed during the current study.,False,True,False dataset,10.1186_s12889-023-16038-3,doi10.1186_s12889-023-16038-3,Availability of data and materials The datasets used and analyzed during this current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pone.0257370,doi10.1371_journal.pone.0257370,Data Availability Statement This study was registered in the Open Science Framework Registry (https://osf.io/rqve6). The review protocol can be accessed at https://bookdown.org/MathiasHarrer/Doing_Meta_Analysis_in_R/. Data are available from the Dryad Data Repository (https://datadryad.org/stash/dataset/doi:10.6078/D10T42).,True,True,True dataset,10.1098_rsos.220808,doi10.1098_rsos.220808,Data accessibility. This article has no additional data.,False,True,False dataset,10.1038_s41556-023-01184-y,doi10.1038_s41556-023-01184-y,"Data availabilityAll data that support the findings of this study are available within the paper and its supplementary files. Sequencing data that support the findings of this study have been deposited in the Gene Expression Omnibus under accession code GSE208072. Previously published RNA-seq data from BCC, SCC and normal EpdSCs that were re-analysed here are available under accession code GSE152487. Source data are provided with this paper. All other data supporting the findings of this study are available from the corresponding author on reasonable request.Code availabilityAll bioinformatic analysis tools and pipelines used in this study are documented in the method section. Codes are available from the corresponding author upon reasonable request.",False,True,True dataset,10.1371_journal.pcbi.1011795,doi10.1371_journal.pcbi.1011795,"Data Availability Statement: Computational code is available at https://github.com/kieran12lamb/SARS-CoV2_Mutational_Signatures GISAID data accessions are available at doi.org/10.55876/gis8.221201qs, doi.org/10.55876/gis8.230406qg and doi.org/10.55876/gis8.230406fb.",False,True,True dataset,10.1038_s41598-020-77562-5,doi10.1038_s41598-020-77562-5,Data availability All data generated and analyzed during the present study are available upon request from the corresponding author upon reasonable request.,False,True,False dataset,10.1073_pnas.2304611120,doi10.1073_pnas.2304611120,"Data, Materials, and Software AvailabilityStructure factors and refined coordinates obtained from X-ray crystallography have been deposited into the Protein Data Bank (www.wwpdb.org) under PDB accession codes: 8SSP (72) (AurA-danusertib-Mb1), 8SSO (73) (AurA-danusertib-Mb2), and 8SSN (74) (Abl64–510-SKI-asciminib).",True,True,True dataset,10.3390_biom13060952,doi10.3390_biom13060952,Data Availability Statement The data supporting this study are available from the corresponding authors upon reasonable request.,True,True,False dataset,10.1177_03010066231175014,doi10.1177_03010066231175014,Data Availability: Data and scripts used to conduct this analysis can be viewed at Open Science Framework: Data and analysis for Effects of cortical distance on the Ebbinghaus and Delboeuf illusions. https://doi.org/10.17605/OSF.IO/GUHSF.,True,True,True dataset,10.1038_s42003-023-04955-3,doi10.1038_s42003-023-04955-3,"Data availabilityThe main data supporting the results in this study are available within the paper and its Supplementary Information. Source data for all figures can be found in Supplementary Data 1. The raw and analysed datasets generated during the study are too large to be publicly shared, yet they are available for research purposes from the corresponding authors on reasonable request.",True,True,False dataset,10.1093_jncics_pkab068,doi10.1093_jncics_pkab068,"Data Availability The data underlying this article cannot be shared publicly due to privacy restrictions of individuals that participated in the study. Aggregated, deidentified data may be shared on reasonable request to the corresponding author.",False,True,False dataset,10.1016/j.jbc.2022,doi10.1016/j.jbc.2022,Data availability Data available upon request. Contact anthony.koleske@yale. edu for more information. The limited proteolysis mass spectrometry data have been deposited to the ProteomeXchange Consortium via the PRIDE (46) partner repository with the dataset identifier PXD034393 (http://www.ebi.ac.uk/pride). The cross-linking raw mass spectrometry data and peak lists are available in the massIVE repository (https://massive.ucsd. edu) with accession number: MSV000089621 Annotated spectra supporting the cross-linked identifications are published on MS-Viewer (https://msviewer.ucsf.edu/ cgi-bin/msform.cgi?form=msviewer) with the following search keys: Trio SR6-GEF1-WT: l4abvtas5a,False,True,True dataset,10.1038_s41586-023-06415-8,doi10.1038_s41586-023-06415-8,"Data availabilityDesign structures, AF2 models and experimental measurements are available at https://figshare.com/s/439fdd59488215753bc3. Cryo-EM maps and corresponding atomic models for the Influenza HA binder in Fig. 6d–h have been deposited in the PDB and the Electron Microscopy Data Bank under accession codes 8SK7 and EMDB-40557, respectively. Electron microscopy data collected for the HE0537 oligomer are available at EMDB-40602.Code availabilityCode for running RFdiffusion has been released on GitHub, free for academic, personal and commercial use at https://github.com/RosettaCommons/RFdiffusion. It is also available as a Google Colab notebook, accessible through GitHub.",False,True,True dataset,10.1088_1361-6501_ad0e9d,doi10.1088_1361-6501_ad0e9d,"Data availability statementThe data cannot be made publicly available upon publication because the cost of preparing, depositing and hosting the data would be prohibitive within the terms of this research project. The data that support the findings of this study are available upon reasonable request from the authors.",False,True,False dataset,10.1371_journal.pone.0255730,doi10.1371_journal.pone.0255730,Data Availability Statement All relevant data are within the manuscript.,False,True,False dataset,10.1371_journal.pbio.3002512,doi10.1371_journal.pbio.3002512,"Data Availability Statement: Codes and preprocessed data are available at https://osf.io/m7dta/. Note that raw SEEG and neuroimaging (T1-MPRAGE) data are protected and cannot be shared (CPP Sud-Est V, 2009-A00239-48).",False,True,True dataset,10.12688_f1000research.16224.3,doi10.12688_f1000research.16224.3,"Data availability Pediococcus acidilactici strain DS32 16S ribosomal RNA gene, partial sequence, obtained during this study. GenBank accession number MH938236: http://identifiers.org/ncbigi/GI:1481059229.",False,True,False dataset,10.1038_s41598-022-24860-9,doi10.1038_s41598-022-24860-9,"Data availability All data presented here can be found online in Supplementary Information 1 (includes Methods S1–S6; Fig- ures S1–S3; Tables S1–S5), and Supplementary Data S1.",False,True,False dataset,10.1371_journal.pone.0279220,doi10.1371_journal.pone.0279220,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files. All files are available from thefigshare database (10.6084/m9.figshare.22578787 10.6084/m9.figshare.22578808).,False,True,True dataset,10.1016_j.jrurstud.2023.01.003,doi10.1016_j.jrurstud.2023.01.003,Data availabilityData will be made available on request.,False,True,False dataset,10.1088_1402-4896_ad07c3,doi10.1088_1402-4896_ad07c3,Data availability statementThe data cannot be made publicly available upon publication because they contain sensitive personal information. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.3390_ijms241210388,doi10.3390_ijms241210388,Data Availability StatementNot applicable.,False,True,False dataset,10.1038_s41467-021-27769-5,doi10.1038_s41467-021-27769-5,"Data availability The data and code underlying Fig. 2a, c, d are provided in the github repository https:// github.com/ClaMtnez/Ocean_tags. The data underlying Figs. 3, 4 & 5 and Supplementary Figs. 1, 4 & 5 are provided as a Supplementary Data Files. The sequence data generated in this study have been deposited in the EMBL Nucleotide Sequence Database (ENA) database under Bioproject PRJEB35712 (metagenomic and metatranscriptomic raw reads, metagenomic and metatranscriptomic assemblies, metagenomic assembled genomes, and single-cell amplified genomes) and in the NCBI Sequence Read Archive (SRA) under Bioproject PRJNA593264 (16S rRNA gene amplicon reads). The following public databases were used in this study: Swiss-Prot database, https://www.uniprot.org/, release-2018_10; Genome Taxonomy Database, https://gtdb.ecogenomic.org/, release 80; SILVA non-redundant SSU Ref database, https://www.arb-silva.de/, v.138; UniRef 100 VIROME database, http:// virome.dbi.udel.edu; Greening lab metabolic marker gene database, https://doi.org/ 10.26180/c.5230745; CAZyme HMM database, https://bcb.unl.edu/dbCAN2/, v.8.0; Pfam HMM database, http://pfam.xfam.org/, release 32.0; and TIGRFAM HMM database, https://www.ncbi.nlm.nih.gov/genome/annotation_prok/tigrfams/, release 15.0",False,True,True dataset,10.1371_journal.pone.0240176,doi10.1371_journal.pone.0240176,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1073_pnas.2220576120,doi10.1073_pnas.2220576120,"Data, Materials, and Software Availability Sequencing data is available at National Center for Biotechnology Information Gene Expression Omnibus under accession GSE214456 (52). All other data are included in the manuscript and/or SI Appendix.",True,True,True dataset,10.1088_1748-3190_ad00a2,doi10.1088_1748-3190_ad00a2,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1093_nar_gkad633,doi10.1093_nar_gkad633,"Data AvailabilityAnalyses and data acquisition codes are upload on lab GitHub account and archived in Zenodo with the following doi. Additionally, raw data that support our findings have been uploaded and archived in Zenodo, corresponding to each individual figure.GitHub: https://github.com/Ha-SingleMoleculeLabAnalyses, data acquisition codes, and raw data are archived in Zenodo:Raw data analysis DOI: 10.5281/zenodo.4925617Data acquisition DOI: 10.5281/zenodo.4925630Raw data DOI: 10.5281/zenodo.8088172",False,True,True dataset,10.1186_s12872-022-02488-x,doi10.1186_s12872-022-02488-x,"Availability of data and materials The data that support the findings of this study are available from the National Health Insurance Service in the Republic of Korea, but restrictions apply to the availability of these data, which were used under license for the current study and so are not publicly available. Data are, however, available from the authors upon reasonable request and with permission from the National Health Insurance Service.",False,True,False dataset,10.1088_1402-4896_ad075b,doi10.1088_1402-4896_ad075b,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s41467-022-35112-9,doi10.1038_s41467-022-35112-9,Data availability Data from this study is available at https://zenodo.org/badge/ latestdoi/566835035. Code availability The version of the model code used in this study is tagged as release v1.0 and is available at https://zenodo.org/badge/latestdoi/566835035. Necessary boundary condition files and observational data are inclu- ded as part of the code release.,False,True,True dataset,10.1016_j.celrep.2023.112408,doi10.1016_j.celrep.2023.112408,Data and code availability Original small-RNA sequencing datasets are publicly available in NCBI under the accession number BioProject: PRJNA874806.,False,True,True dataset,10.1088_1402-4896_ad0b51,doi10.1088_1402-4896_ad0b51,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pone.0241692,doi10.1371_journal.pone.0241692,Data Availability Statement Data are contained within the paper.,False,True,False dataset,10.1371_journal.pclm.0000184,doi10.1371_journal.pclm.0000184,Data Availability Statement Causal loop diagrams refined during workshop discussion comprise the major data source of the study and are included in the submitted manuscript. Search terms and the extraction matrix used for the literature search to develop preliminary causal loop models are included as Supplementary material. Listing of the literature accessed and data extracted are lodged on the QMU eData repository: https://eresearch.qmu.ac.uk/handle/20.500.12289/12889.,False,True,False dataset,10.1186_s12917-019-2170-8,doi10.1186_s12917-019-2170-8,Availability of data and materials The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1088_1402-4896_ad0a2a,doi10.1088_1402-4896_ad0a2a,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://orcid.org/0000-0003-3389-9318.,False,True,False dataset,10,doi10,Data availability The data that support the findings of this study are available from the corresponding authors upon request.,False,True,False dataset,10.1371_journal.pone.0262844,doi10.1371_journal.pone.0262844,Data Availability Statement All relevant data are within the paper.,False,True,False dataset,10.3389_fmicb.2021.711073,doi10.3389_fmicb.2021.711073,"DATA AVAILABILITY STATEMENT The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding author/s.",False,True,False dataset,10.1038_s42003-021-02716-8,doi10.1038_s42003-021-02716-8,"Data availabilitySeveral public databases were used in this study, including Immune Epitope Database and Analysis Resource (IEDB) (https://www.iedb.org/) for experimental measurements, UniProt (https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/uniprot_sprot.fasta.gz) for decoy peptides, and IPD-IMGT/HLA (https://github.com/ANHIG/IMGTHLA/tree/3410) for MHC-I allele sequences. Research data files supporting this study, including the peptide-binding cleft sequence of MHC-I alleles; the training, validation, and benchmark datasets; the prediction of the validation and benchmark datasets; and the prediction of the allele expansion are available from Mendeley Data (10.17632/c249p8gdzd.3)33. Source data for all figures are provided in Supplementary Data. Code availabilityThe source code of the research and the MHCfovea’s predictor are freely available at GitHub (https://github.com/kohanlee1995/MHCfovea) and Mendeley Data33 for academic non-commercial research purposes. All source codes are based on Python (v3.6.9) and its packages, including numpy (v1.18.2), pandas (v1.0.3), scikit-learn (v0.22.2), pytorch (v1.4.0), matplotlib (v3.2.1), seaborn (v0.10.0), logomaker (v0.8). Numpy, pandas, and scikit-learn, are used for data analysis; pytorch is used for deep learning; matplotlib, seaborn, and logomaker are used for visualization. The website for the summarization of MHCfovea is available at https://mhcfovea.ailabs.tw.",False,True,True dataset,10.1111_sapm.12544,doi10.1111_sapm.12544,DATA AVA ILAB IL ITY STATEMENT Data sharing not applicable to this article as no datasets were generated or analyzed during the current study.,True,True,False dataset,10.1073_pnas.2221809120,doi10.1073_pnas.2221809120,"Data, Materials, and Software AvailabilityAll study data are included in the article and/or SI Appendix. Sequencing data are available through the National Center for Biotechnology Information Gene Expression Omnibus, accession number GSE234805 (74).",True,True,True dataset,10.3390_bs13010066,doi10.3390_bs13010066,Data Availability Statement: Data supporting the reported results is kept by the first author.,False,True,False dataset,10.1371_journal.pone.0265477,doi10.1371_journal.pone.0265477,Data Availability Statement The raw data was collected from Taiwan Centers for Disease Control (CDC) and it is available at www.cdc.gov.tw/En. The tool and dataset are publicly available at github.com/mahsaashouri/Taiwan-COVID-19-Interactive-tool.,False,True,True dataset,10.2196_41005,doi10.2196_41005,Data Availability The deidentified data analyzed in this study are available from the corresponding author upon reasonable request.,False,True,False dataset,10.3389/fnbeh.2020,doi10.3389/fnbeh.2020,"DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.",False,True,False dataset,10.1073_pnas.2301852120,doi10.1073_pnas.2301852120,"Data, Materials, and Software Availability Cryo-EM images data have been deposited in Electron Microscopy Public Image Archive (EMPIAR) database with accession number EMPIAR-11544 (https://www.ebi.ac.uk/empiar/EMPIAR-11544/) (41).",False,True,True dataset,10.7554_elife.76554,doi10.7554_elife.76554,"Data availability Sequencing data have been deposited in GEO under accession code GSE157681. The following dataset was generated: Author(s) Year Dataset title Dataset URL Database and Identifier Brown JM, Helsley R, Kadam A, Neumann C 2021 The Gut Microbe-Derived Metabolite Trimethylamine is a Biomarker of and Therapeutic Target in Alcohol-Associated Liver Disease http://www.ncbi. nlm.nih.gov/geo/ query/acc.cgi?acc= GSE157681 NCBI Gene Expression Omnibus, GSE157681",False,True,True dataset,10.1088_1758-5090_acfb3c,doi10.1088_1758-5090_acfb3c,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: www.ncbi.nlm.nih.gov/bioproject/PRJNA953644. The other data that supports the findings of this study are available upon reasonable request.,False,True,False dataset,10.1371_journal.pclm.0000285,doi10.1371_journal.pclm.0000285,"Data Availability Statement: R code and aggregated data used in climate risk calculations are available at https://github.com/groundfish-climatechange/fish-footprints. Confidential vessel-level logbook, landings, and registration data may be acquired by direct request from the California, Oregon, and Washington Departments of Fish and Wildlife, subject to a non-disclosure agreement.",False,True,True dataset,10.1371_journal.pone.0256592,doi10.1371_journal.pone.0256592,Data Availability Statement The data underlying the results presented in this study are from the Centers for Medicare and Medicaid Services and CMS does not permit data sharing as per their legally binding and standard data use agreements. The exact data used in this study can be purchased directly from the Centers for Medicare and Medicaid Services (https://www.cms.gov/Research-Statistics-Data-and-Systems/Research-Statistics-Data-and-Systems).,False,True,False dataset,10,doi10,Data availability The data that support this study are available from the corresponding author upon reasonable request. The crystal structure described in this study has been deposited in the Protein Data Bank under the accession number 7TD5. The LC-MS/MS data files have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange. org) via the MassIVE partner repository with the dataset identifier MSV000088683. Source Data are provided with this paper.,False,True,True dataset,10.1088_1361-6463_ad0ac1,doi10.1088_1361-6463_ad0ac1,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1186_s12866-020-01881-w,doi10.1186_s12866-020-01881-w,Availability of data and materials All data generated or analyzed during this study are included in this published article [and its supplementary information files].,False,True,False dataset,10.1016_j.isci.2022.104876,doi10.1016_j.isci.2022.104876,Data and code availability d Microscopy images published in this paper will be shared by the lead contact upon request. d Original code is uploaded in the supplementary documents and is publicly available as of the date of publication. Section 1: Data All data reported in this paper will be shared by the lead contact upon request. Section 2: Code All original code is available in this paper’s supplemental information. Section 3: Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.,False,True,True dataset,10.1088_1361-6641_acfa1f,doi10.1088_1361-6641_acfa1f,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pone.0232007,doi10.1371_journal.pone.0232007,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10,doi10,DATA AVAILABILITY The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.3389/fmicb.2019,doi10.3389/fmicb.2019,"DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article are made available by the authors, without undue reservation, through Zenodo (doi: 10.5281/zenodo.3582838).",True,True,False dataset,10.1128_mbio.01039-23,doi10.1128_mbio.01039-23,"DATA AVAILABILITYCrystallographic data have been deposited to the RCSB protein data bank (accessions 8FZY, 8FZZ, and 8G0K). Metagenomic sequencing data were previously published (32) and are publicly available at the NCBI sequence read archive (BioProject PRJNA398089). Plasmids and bacterial strains generated in the study are listed in Table S3 and will be available upon reasonable request to the corresponding author.",False,True,False dataset,10.1038_s41467-022-28771-1,doi10.1038_s41467-022-28771-1,"Data availability Data supporting the results of this study are presented within the article and supplementary figures. NGS data are available in the NCBI Sequence Read Archive database (BioProject accession code PRJNA803881). Additional details and data to support the findings of this study are available from the corresponding authors upon reasonable request. Source data for Figs. 1a, 2a, c, 3b, d–f, 4, 5b, d, S1, S2, S4, S5a are provided as Source Data file. Source data are provided with this paper.",False,True,True dataset,10.1073_pnas.2301121120,doi10.1073_pnas.2301121120,"Data, Materials, and Software Availability Cryo-EM maps and atomic models for all structures described in this work have been deposited to the Electron Microscopy Data Bank (EMDB) and the Protein Data Bank (PDB), respectively. Accession codes are as follows: PLCβ3 in solution-8EMV and EMD-28266, PLCβ3 in complex with Gβγ on vesicles-8EMW and EMD-28267, and PLCβ3 in complex with Gβγ on nanodiscs-8EMX and EMD-28268.",True,True,True dataset,10.1371_journal.pntd.0009999,doi10.1371_journal.pntd.0009999,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1088_1361-6595_ad05f5,doi10.1088_1361-6595_ad05f5,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1038_s41598-020-79151-y,doi10.1038_s41598-020-79151-y,Data availability The raw data of the study are available at http://www.nature.com/srep.,False,True,False dataset,10.1038_s41467-022-30736-3,doi10.1038_s41467-022-30736-3,"Data availability The data used in this paper are available at the following url: https://figshare.com/ articles/dataset/Manuscript_Data/16695592. In addition, Source Data are provided with this paper, which can be used to reproduce figures without rerunning analyses. Source data are provided with this paper. Code availability Analysis code used in this study is in the repository available at https://github.com/ Brody-Lab/dynamic_ephys36.",False,True,True dataset,10.1088_1751-8121_ad0b5c,doi10.1088_1751-8121_ad0b5c,Data availability statementNo new data were created or analysed in this study.,False,True,False dataset,10.3390_genes14061231,doi10.3390_genes14061231,Data Availability Statement Not applicable.,False,True,False dataset,10.1088_1361-665x_ad1426,doi10.1088_1361-665x_ad1426,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10,doi10,Data availability Data supporting the findings of this manuscript are available from the corresponding author upon request. The source data underlying all figures are available as a Source Data file provided with this paper. Source data are provided with this paper. Code availability All codes used for data analysis may be requested from the authors.,False,True,True dataset,10.1371_journal.pgen.1011201,doi10.1371_journal.pgen.1011201,"Data Availability Statement: The consensus sequence of Spoink as well as the sequences of the six PCR amplicons are available at https://github.com/rpianezza/Dmel-Spoink/tree/main/releasedseqs. The tool LTRtoTE is available on GitHub (https://github.com/Almo96/LTRtoTE). The analysis performed in this work have been documented with RMarkdown and have been made publicly available, together with the resulting figures, at GitHub (https://github.com/rpianezza/Dmel-Spoink; see *.md files).",False,True,True dataset,10.1371_journal.pone.0222013,doi10.1371_journal.pone.0222013,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1007_s00208-022-02489-3,doi10.1007_s00208-022-02489-3,Data Availability Data sharing not applicable to this article as no data sets were generated or analysed during the current study.,False,True,False dataset,10.1158_1078-0432.ccr-21-3817,doi10.1158_1078-0432.ccr-21-3817,"Data availability The somatic variant calls and normalized RNA-seq intensity data, code, and deidentified clinical data are available here: https://github. com/kbolton-lab/Bolton_OCCC. This will enable all the figures and tables to be re-generated and also provide data for others for future analyses. We will also make the BAMs/FASTQs available to researchers through contacting Kelly Bolton (bolton@wustl.edu).",True,True,True dataset,10.1371_journal.pdig.0000221,doi10.1371_journal.pdig.0000221,"Data Availability Statement Public deposition of raw data points would breach compliance with the protocol approved by the Danish Data Protection Agency. In the paper, we have also had to limit the number of indirect identifiers in cases where there might be a risk of compromising patient privacy (e.g. Tables 1 and 2). Reviewers and others may obtain access to the data by request, and after a data processing agreement has been signed. There will be no limitation to data sharing as long as a data sharing agreement is signed. As per Danish research code, we are required to store research data for a minimum of 5 years starting from the time of publication. We will ensure this by standard data management and storage at our institution. Please address any correspondence to Dr Thomas Bandholm; thomas.quaade.bandholm@regionh.dk (corresponding author) or the Department of Clinical Research, Hvidovre Hospital, Kettegaard Alle 30, DK-2650 Hvidovre, Copenhagen, Denmark. Phone: +45 3862 3862.",False,True,False dataset,10.1016_j.envres.2023.115368,doi10.1016_j.envres.2023.115368,Data availabilityData will be made available on request.,False,True,False dataset,10.1371_journal.pone.0263447,doi10.1371_journal.pone.0263447,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1038_s41598-021-03032-1,doi10.1038_s41598-021-03032-1,Data availability All data are available in the manuscript.,False,True,False dataset,10.1371_journal.pcbi.1008853,doi10.1371_journal.pcbi.1008853,"Data Availability Statement BCI FDP data are available from https://repository.si.edu/handle/10088/11. The authors do not own the data and are unable to share it in a public repository, as the majority of the data is held by various government agencies. However interested researchers are able to access all the data through the Smithsonian Institution’s ForestGeo project (https://forestgeo.si.edu/explore-data) The EAA analysis programs, written in R, along with their documentation, are freely available from https://github.com/wangbinzjcc/EAAr.",False,True,True dataset,10.1088_1361-6463_ad146b,doi10.1088_1361-6463_ad146b,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pgen.1010857,doi10.1371_journal.pgen.1010857,Data AvailabilityHi-C data were deposited in the Gene Expression Omnibus (accession no. GSE225771). The scripts used for analyzing Hi-C data have been deposited to Github (https://github.com/hbbrandao/Borrelia_HiC_Analysis). All other relevant data are within the paper and its Supporting Information files.,False,True,True dataset,10.1038_s41598-020-65766-8,doi10.1038_s41598-020-65766-8,Data availability Data are available at http://bicresources.jcbose.ac.in/ssaha4/drag/browse.php. Supporting figures and tables are included in Supplementary Files 1–3.,False,True,False dataset,10.1007_s00127-023-02428-w,doi10.1007_s00127-023-02428-w,Data Availability The datasets generated during and/or analysed dur- ing the current study are not publicly available under current ethical approvals but are available from the corresponding author on reason- able request.,False,True,False dataset,10.1088_1402-4896_ad0c11,doi10.1088_1402-4896_ad0c11,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pone.0248369,doi10.1371_journal.pone.0248369,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1371_journal.pone.0298960,doi10.1371_journal.pone.0298960,Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1016_j.cell.2023.05.028,doi10.1016_j.cell.2023.05.028,"Data and Code availabilityAll raw and processed sequencing data in this study, including single-cell DNA methylation sequencing, single-cell RNA-seq, ChIP-seq, Cut and Run assay and Nanopore sequencing, have been deposited to the NCBI Gene Expression Omnibus (GEO) database under accession GSE208449. All data are publicly available as of the date of publication.This paper analyses existing, publicly available data or available upon request to the authors. These accession numbers for the datasets are listed in the key resources table.This paper does not report original code. All the scripts and mathematical algorithms used in this study will be available from the corresponding authors upon request.",False,True,True dataset,10.1016_j.enpol.2022.113277,doi10.1016_j.enpol.2022.113277,Data availabilityNo data was used for the research described in the article.,False,True,False dataset,10.1371_journal.pgen.1008460,doi10.1371_journal.pgen.1008460,Data Availability Statement The RNA sequencing data of human cell lines and zebrafish tissues are available from NCBI Sequence Read Archive (SRA) (accession numbers PRJNA542249 and PRJNA543385). All other relevant data are available within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.ppat.1009995,doi10.1371_journal.ppat.1009995,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1038_s41467-023-39627-7,doi10.1038_s41467-023-39627-7,"Data availabilityThe sequencing data generated in this study have been deposited in the NCBI Gene Expression Omnibus (GEO) database under accession code GSE192447. The publicly available whole blood bulk short-read RNA-Seq data from healthy samples and samples infected with Makona Ebola Virus data used in this study are available in the NCBI Gene Expression Omnibus (GEO) database under accession code GSE115785. The single-cell RNA-Seq data used in this study are available in the NCBI Gene Expression Omnibus (GEO) database under accession code GSE158390. Raw Seurat Objects for both single-cell datasets used in this study are available at Zenodo. The full co-expression network file is also provided (10.5281/zenodo.7997135). The reference genome of EBOV used in this study is available in the GenBank database under accession code KU182905.1. The assembly and reference genome of Macaca Mulatta used in this study are available in the Ensembl database (Mmul_10) (https://ftp.ensembl.org/pub/release-100/fasta/macaca_mulatta/dna/Macaca_mulatta.Mmul_10.dna.toplevel.fa.gz, https://ftp.ensembl.org/pub/release-100/gtf/macaca_mulatta/Macaca_mulatta.Mmul_10.100.gtf.gz). The assembly and reference genome of human used in this study are available in the Gencode database (release_23) (https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_23/gencode.v23.annotation.gtf.gz, https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_23/GRCh38.primary_assembly.genome.fa.gz). Source data are provided with this paper.Code availabilityThe code used for this study is available at: https://github.com/Mele-Lab/2023_SingleCellEbolaLncRNAs_NatComms.",False,True,True dataset,10.15252_embj.2022112987,doi10.15252_embj.2022112987,Data availability Original high resolution Z stacks for all images used in figures have been deposited in the BioImage Archive: accession number S‐BIAD651 (https://www.ebi.ac.uk/biostudies/BioImages/studies/S‐BIAD651?query=S‐BIAD651).,False,True,False dataset,10.1371_journal.pone.0287008,doi10.1371_journal.pone.0287008,Data Availability Statement The data underlying the results presented in the study are available from Table 1.,False,True,False dataset,10.1038_s41598-021-00119-7,doi10.1038_s41598-021-00119-7,Data availability The data presented in this study are available on request from the corresponding authors.,False,True,False dataset,10.1038_s41593-023-01409-1,doi10.1038_s41593-023-01409-1,Data availabilityAll primary data for the figures and extended data figures are available from the corresponding author (K.D.) upon request.Code availabilityThe code used for data processing and analysis is available from the corresponding author (K.D.) upon request.,True,True,True dataset,10.1038_s42003-023-04981-1,doi10.1038_s42003-023-04981-1,"Data availabilityPlasmid sequences are available through the PLSDB database (https://ccb-microbe.cs.uni-saarland.de/plsdb/) while plasmid metadata files are hosted in a Github repository (https://github.com/LBHarrison/Lociq/). Source data for Figs. 3, 6 and 8 are provided in Supplementary Data 3, 7 and 8, respectively.Code availabilityThe Lociq program is available through the Github repository https://github.com/LBHarrison/Lociq/38.",False,True,True dataset,10.1038_s41588-023-01451-6,doi10.1038_s41588-023-01451-6,"Data availabilityPublic and private data can be accessed through their respective portals. Private data will require prior authorization. Data can be cleaned and normalized using any standard or well-established procedure for variant analysis or the procedures described in this paper, including referenced papers or procedures. The integrated, curated and de-duplicated data (to the best of our ability) are available in Supplementary Table 1. No additional data or intermediate results will be available upon request given the high manual burden to verify access to a variety of private portals, repositories and patients.Code availabilityVariants were processed using well-established procedures described in the referenced papers. Datasets from diverse sources were integrated using a combination of code (to automate certain steps) and manual curation. Thus, the standalone code is not sufficient to regenerate the integrated dataset. Therefore, this code and intermediate results from dataset integration and curation is not available upon request. The code used for analysis and to generate figures is available under Creative Commons license through Zenodo at 10.5281/zenodo.8008632. Analyses were executed in Python (v3.7), R (v4.1.1), GraphPad Prism (v92.2), matplotlib(v3.3.1), circos (v0.69-9) and seaborn (v0.11.1).PyMOL v2.4.0 was used to visualize structures. The Consurf online server was used for conservation analysis. Geneious Prime v2021.2.2 was used for multiple sequence alignmentss. The PolyPhen2 online server using the HumVar model was used to predict the severity/pathogenicity of the compiled NDD mutations. Unless otherwise noted, mutational counts, bar plots, pie charts, and Venn diagrams throughout were made using a combination of Python (v3.7), R (v4.1.1), GraphPad Prism (v92.2), matplotlib(v3.3.1) and seaborn (v0.11.1). The lollipop portion of the 2D schematics were created using the St. Jude PeCan Protein Paint software. Missense substitutions were visualized as a Sankey diagram using Google Charts. The Circos plot was made using the Circos software (v0.69-9). Missense substitutions were visualized as a Sankey diagram using Google Charts. The code used to process and visualize the data are available under the MIT license at Zenodo at 10.5281/zenodo.8008632.",False,True,True dataset,10.1371_journal.pone.0240269,doi10.1371_journal.pone.0240269,Data Availability Statement Genomics data are now available at the NCBI repository: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE156993.,False,True,False dataset,10.1186_s12889-023-15632-9,doi10.1186_s12889-023-15632-9,Data availability All datasets used for supporting the conclusions of this paper are available from the corresponding author on request.,False,True,False dataset,10.1016_j.yjsbx.2023.100085,doi10.1016_j.yjsbx.2023.100085,"Data availability Micrographs are available at EMPIAR-11397. Reconstructions are available on EMDB with the following accession codes: for Glacios 0-50 nm, EMD-29566; 50-100 nm, EMD-29567; 100-150 nm, EMD-29568; 150-200 nm, EMD-29569; 200-500 nm, EMD-29570. For Arctica in counting mode 0-50 nm, EMD-29573; 50-100 nm, EMD-29574; 100-150 nm, EMD-29575; 150-200 nm, EMD-29576; 200-500 nm, EMD-29577. For Arctica in super resolution mode 0-50 nm, EMD-29589; 50-100 nm, EMD-29591; 100-150 nm, EMD-29592; 150-200 nm, EMD-29593; 200-500 nm, EMD-29594. For Krios unfiltered 0-50 nm, EMD-29554; 50-100 nm EMD-29555; 100-150 nm, EMD-29556; 150-200 nm, EMD- 29557; 200-500 nm, EMD-29558. For Krios filtered 0-50 nm, EMD- 29536; 50-100 nm, EMD-29535; 100-150 nm, EMD-29559; 150-200 nm, EMD-29513; 200-500 nm, EMD-29393.",False,True,True dataset,10.1016_S2213-2600(20)30559-2,doi10.1016_S2213-2600(20)30559-2,"Data sharing Access to all data and samples collected by ISARIC4C are controlled by an Independent Data and Materials Access Committee composed of representatives of research funders, academia, clinical medicine, public health, and industry. The application process for access to the data is available on the ISARIC4C website.",False,True,False dataset,10.1371_journal.pgph.0002891,doi10.1371_journal.pgph.0002891,Data Availability Statement: Data are included in supporting materials.,False,True,False dataset,10.1038_s41467-023-38529-y,doi10.1038_s41467-023-38529-y,Data availability Spike recording data in NWB format are available for download at https://dandiarchive.org/dandiset/000060/draft. Source data are provided with this paper.,False,True,False dataset,10.3390_biom11010118,doi10.3390_biom11010118,Data Availability StatementAll data are contained within the article or supplementary material.,False,True,False dataset,10.1088_1402-4896_ad1320,doi10.1088_1402-4896_ad1320,Data availability statementAll data used are available in the manuscript. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1038_s41467-023-37865-3,doi10.1038_s41467-023-37865-3,"Atomic coordinates that support the findings of this study are available in the RCSB Protein Data Bank (PDB) under accession numbers: 7LV2 [10.2210/pdb7LV2/pdb], 7LTU [10.2210/pdb7LTU/pdb] (form 1), 7LUX [10.2210/pdb7LUX/pdb] (form 2), and 7LUZ [10.2210/pdb7LUZ/pdb]. The amino acid sequences of the Nucleocapsid proteins of SARS-CoV-2 and SARS-CoV analyzed in this study are available on UniProtKB, accession numbers: P0DTC9, and P59595 respectively. Amino acid sequences of other coronavirus Nucleocapsid proteins were accessed from the European Nucleotide Archive [ENA; https://www.ebi.ac.uk/genomes/virus.html]. Raw EM images, light and fluorescence microscopy images and fiber diffraction source files generated in this study have been deposited in the Figshare respiratory at [https://figshare.com/projects/Low_Complexity_Domains_of_the_Nucleocapsid_Protein_of_SARS-CoV-2_Form_Amyloid_Fibrils/162391]. Data for all plots presented in this manuscript are provided with this paper in the Source Data file. Source data are provided with this paper.",False,True,True dataset,10.1111_jbfa.12686,doi10.1111_jbfa.12686,"DATA AVA ILAB IL ITY STATEMENT The data that support the findings of this study are available from third parties. Restrictions apply to the availability of these data, which were used under license for this study. Data are available from the authors with the permission of third parties.",False,True,True dataset,10.1371_journal.pcbi.1007774,doi10.1371_journal.pcbi.1007774,Data Availability Statement All relevant data are available at the github repository: https://github.com/mdkarcher/BEAST-XML.,False,True,True dataset,10.1088_1361-6382_ad0749,doi10.1088_1361-6382_ad0749,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pone.0280975,doi10.1371_journal.pone.0280975,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1186_s12934-021-01548-9,doi10.1186_s12934-021-01548-9,"Availability of data and materials The original contributions presented in the study are publicly available. The raw sequence data reported in this paper have been deposited in the Genome Sequence Archive (Genomics, Proteomics & Bioinformatics 2017) in National Genomics Data Center (Nucleic Acids Res 2020), Beijing Institute of Genomics (China National Center for Bioinformation), Chinese Academy of Sciences, under accession number CRA003010 that are publicly accessible at https://bigd.big.ac.cn/gsa.",True,True,False dataset,10.1038_s41586-023-05909-9,doi10.1038_s41586-023-05909-9,"Data availability The atomic coordinates and experimental data of RPB_PEW3_R4–PAWx4, RPB_PLP3_R6–PLPx6, RPB_LRP2_R4–LRPx4, RPB_PLP1_R6–PLPx6, RPB_PLP1_R6–PLPx6 (alternative conformation 1), RPB_PLP1_R6–PLPx6 (alternative conformation 2) and RPB_LRP2_R4 (pseudopolymeric) have been deposited in the RCSB PDB with the accession numbers 7UDJ, 7UE2, 7UDK, 7UDL, 7UDM, 7UDN and 7UDO, respectively. The Rosetta macromolecular modelling suite (https://www.rosettacommons.org) is freely available to academic and non-commercial users. Commercial licences for the suite are available through the University of Washington Technology Transfer Office. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium through the PRIDE partner repository with the dataset identifiers PXD038492 and 10.6019/PXD038492. Source data are provided with this paper. All protein sequences for the binders described in this study are provided in Supplementary Table 2.",False,True,True dataset,10.1161_CIRCRESAHA.121.319314,doi10.1161_CIRCRESAHA.121.319314,Data Availability The detailed methods are available in the Data Supplement. Please see also the Major Resources Table in the Data Supplement. The supporting data are available from the cor- responding author upon request.,False,True,False dataset,10.1371_journal.pwat.0000213,doi10.1371_journal.pwat.0000213,Data Availability Statement: All data supporting this study is free access data and the sources and collections details are provided as supplementary information accompanying this paper. The code used for the analysis and results figures is also made available at: https://github.com/J-Marcal/WSF_IneqAnalysis.,False,True,True dataset,10.1371_journal.pone.0283795,doi10.1371_journal.pone.0283795,Data Availability Statement Data and codes are available at: DOI:10.17605/OSF.IO/PS4RM.,False,True,False dataset,10.1038_s41467-023-40247-4,doi10.1038_s41467-023-40247-4,"Data availabilityThe raw reads, and complete pathogen genomes generated in this study have been deposited in the Sequence Read Archive (SRA) and NCBI GenBank, respectively, under BioProject accession codes PRJNA824010 and PRJNA436552. Sample metadata (collection date, state, age, sequencing machine, sequencing batch, etc.), metagenomic read classification data for all samples and controls, viral genome assembly data, reference sequence accession numbers, and RT-qPCR results generated in this study are provided in the Supplementary Data 1 file.Code availabilityOpen source software used in this study is available at https://github.com/broadinstitute/viral-ngs84 (i.e., pipelines for viral genomic analyses; v2.1.8) and at https://github.com/bpetros95/lassa-metagenomics94 (i.e., code for statistical analyses; developed in R v4.1.1 with packages bda v15.2.5, mediation v4.5.0, ROCR v1.0–11, stats v4.1.1, and tidyverse v2.0.0). Information about the Microsoft Premonition metagenomics pipeline is available at https://microsoft.com/premonition. Individuals can access the pipeline ahead of its public release by clicking the “Contact us for availability” button and mentioning this work or by emailing Simon Frost at Frost.Simon@microsoft.com.",False,True,True dataset,10.1016_j.jbc.2023.105075,doi10.1016_j.jbc.2023.105075,"Data availabilityAll data described within the article are contained in the document. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE (73) partner repository with the dataset identifier PXD042589. Any further information and requests for resources and reagents should be directed to and will be fulfilled by the Lead Contact, Vamsi K. Mootha (vamsi@hms.harvard.edu).",False,True,False dataset,10.1007_s00440-023-01195-8,doi10.1007_s00440-023-01195-8,Data availability Data sharing not applicable to this article as no datasets were generated or analysed during the current study.,False,True,False dataset,10.1088_1361-648x_ad1135,doi10.1088_1361-648x_ad1135,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10,doi10,Data Availability Anonymized data will be made available upon request.,False,True,False dataset,10.1186_s12915-020-00859-4,doi10.1186_s12915-020-00859-4,"Availability of data and materialsAll data generated or analysed during this study are included in this published article, its supplementary information files and publicly available repositories.",False,True,False dataset,10.1088_1361-6587_acff7f,doi10.1088_1361-6587_acff7f,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI. https://github.com/YukiJajima/improved-spork/blob/main/NLD_data_CNN.,False,True,True dataset,10.1038_s41598-022-05932-2,doi10.1038_s41598-022-05932-2,"Data availability All ISI system code is deposited at https://github.com/haiderlab/ISI, and source data and analysis code to rep- licate the main results will be publicly available at DOI (https://doi.org/10.6084/m9.fgshare.16200711) upon publication.",False,True,True dataset,10.1371_journal.pone.0255335,doi10.1371_journal.pone.0255335,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1089_cmb.2022.0149,doi10.1089_cmb.2022.0149,"AVAILABILITYIntOMICS is open source software written in R, under GPL-2, and available at https://bioconductor.org/packages/IntOMICS. The implementation relies on existing R packages.",False,True,True dataset,10.1093_gbe_evad119,doi10.1093_gbe_evad119,"Data AvailabilityNCBI accession numbers for all genes analyzed are provided in supplementary data file 1, Supplementary Material online. Alignments and trees used in positive selection analyses are provided in supplementary data file 2, Supplementary Material online. Genotypes for great ape species at the position of the rs2306894 human polymorphism were obtained from: https://www.biologiaevolutiva.org/greatape/data.html. For analyses of MelLec in human populations, the following links were used to download or access the relevant datasets:Sampling locations: https://www.internationalgenome.org/data-portal/population.HGDP Chr12: https://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/.1KG Chr12: http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000G_2504_high_coverage/working/20201028_3202_phased/.Ancestral FASTA files for GRCh38 (homo sapiens ancestor GRCh38.tar.gz downloaded March 2023): https://ftp.ensembl.org/pub/current_fasta/ancestral_alleles/.eQTL analysis available from GTEx: https://gtexportal.org/home/snp/rs2306894.FST, Tajima's D, β(1) statistics, and statistics from linkage disequilibrium analysis are provided in supplementary data file 1, Supplementary Material online. AlphaFold-modeled CLEC12A CTLD structures can be found on figshare at: dx.doi.org/10.6084/m9.figshare.23535738.",False,True,True dataset,10.1186_s12879-021-05907-0,doi10.1186_s12879-021-05907-0,Availability of data and materials All data is publically available through Google Trends and through The Behavioral Risk Factor Surveillance System (BRFSS).,False,True,False dataset,10.3390_genes14061211,doi10.3390_genes14061211,"Data Availability Statement The whole genome data used in this manuscript are available in the GenBank database under BioProject accession PRJNA416233, PRJEB10098, PRJEB10854, PRJNA168142, PRJNA205517, PRJNA230019, PRJNA233529, PRJNA288817 and PRJNA291776.",False,True,True dataset,10.1038_s41590-023-01504-2,doi10.1038_s41590-023-01504-2,"Data availability Raw and processed bulk, scRNA-seq and Visium data from mouse are available from the Gene Expression Omnibus under super series accession GSE202159. Human tumor scRNA-seq data are available at the Human Tumor Atlas Network (HTAN) data coordinating center web platform (https://humantumoratlas.org/). Source data are provided with this paper.",False,True,True dataset,10.1155_2019_8132520,doi10.1155_2019_8132520,Data Availability The data used to support the findings of this study are available from the corresponding author upon request.,False,True,False dataset,10.1186_s12884-019-2192-z,doi10.1186_s12884-019-2192-z,"Availability of data and materialsQualified researchers may request access to patient-level data and related study documents including the clinical study report, study protocol with any amendments, blank case report form, statistical analysis plan, and dataset specifications. Patient level data will be anonymized and study documents will be redacted to protect the privacy of trial participants. Further details on Sanofi’s data sharing criteria, eligible studies, and process for requesting access can be found at: https://www.clinicalstudydatarequest.com.",False,True,False dataset,10.1371_journal.pone.0244962,doi10.1371_journal.pone.0244962,Data Availability Statement Data cannot be shared publicly because of this was not permitted by the consent form signed by participants. Data are available from the Keller-Lamar Health Foundation (info@keller-lamar.org) for researchers who can provide evidence of IRB approval for access.,False,True,False dataset,10.1186_s40168-023-01519-9,doi10.1186_s40168-023-01519-9,Availability of data and materials The raw data in this study is from reference [3]. All analyzed data in this study is available in Additional file 3. The source code is available at https://github.com/Neina-0830/WWTP_community_prediction.,False,True,True dataset,10.1371_journal.pwat.0000137,doi10.1371_journal.pwat.0000137,Data Availability Statement Data have been uploaded to Zenodo 10.5281/zenodo.7447637.,False,True,False dataset,10.1038_s41467-021-24130-8,doi10.1038_s41467-021-24130-8,Data availabilitySingle-cell RNA-seq data files are available in “GSE151337”. All other relevant data supporting the key findings of this study are available within the article and its Supplementary Information files or from the corresponding author upon reasonable request. A reporting summary for this article is available as a Supplementary Information file. Source data are provided with this paper.Code availabilityCodes used in this analysis were deposited onto GitHub: 10.5281/zenodo.4743036.,False,True,True dataset,10.1371_journal.pone.0254310,doi10.1371_journal.pone.0254310,Data Availability Statement All data are public and available on the Brazilian Institute of Geography and Statistics website (www.ibge.gov.br).,False,True,False dataset,10.1111_eva.13529,doi10.1111_eva.13529,"DATA AVAILABILITY STATEMENT Sequence data are hosted at the SRA under BIOPROJECT SUB10359598. Plasmids, ancestor, and mutator clones are avail- able on request. Evolved mutants can be shared subject to Material Transfer Agreements. Experimental data are available at Zenodo with a permanent doi: 10.5281/zenodo.7503995.",False,True,False dataset,10.15252_embj.2022112118,doi10.15252_embj.2022112118,Data availability The data that support the findings of this study are available from the corresponding author. RNA-sequencing data have been deposited in GEO under accession number (GSE215951; http:// www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE215951).,False,True,True dataset,10.1371_journal.pntd.0007072,doi10.1371_journal.pntd.0007072,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1088_1361-6501_ad095a,doi10.1088_1361-6501_ad095a,Data availability statementThe data cannot be made publicly available upon publication because they are owned by a third party and the terms of use prevent public distribution. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1016_j.enpol.2022.113313,doi10.1016_j.enpol.2022.113313,Data availabilityThe data that has been used is confidential.,False,True,False dataset,10.1038_s42255-023-00774-2,doi10.1038_s42255-023-00774-2,"Data availability All data generated or analysed during this study are included in the article and its Supplementary Information. Results of the ORFeome, the CRISPR–Cas9 and the PRISM screens are available in Supplementary Table 1. Data from the Cancer Cell Line Encyclopedia are available at https://depmap.org/portal/. Source data are provided with this paper.",False,True,True dataset,10.1371_journal.pcbi.1010923,doi10.1371_journal.pcbi.1010923,"Data Availability Statement All relevant data are within the manuscript and its Supporting Information files. RNA-seq of samples of human left ventricle heart, left atrial appendage, aorta, tibial arteries, and coronary arteries were downloaded from the GTEx project [29] via dbGaP (phs000424.v8.p2). In addition, we downloaded RNA-seq datasets of dilated cardiomyopathy (DCM), ischemic cardiomyopathy (ICM), and controls (SRA database, accession code GSE116250) [40]. The ribosome profiling dataset of DCM patients was downloaded from the SRA database (GSE131111) [47]. finally, we downloaded additional RNA-seq datasets of ICM from the left and right ventricles of left-sided heart failure, biventricular heart failure, and controls (SRA database accession code GSE120852) [65]. Tables with raw data used for figure plotting can be found in S4 Table.",False,True,True dataset,10.1007_s43076-022-00253-9,doi10.1007_s43076-022-00253-9,"Data Availability Data not available due to ethical restrictions.Due to the nature of this research, partici- pants of this study did not agree for their data (whole transcripts) to be shared publicly. However, some supporting material concerning the data analysis process will be available for both reviewers and readers.",False,True,False dataset,10.7554_elife.88204,doi10.7554_elife.88204,Data availability The 3D cryo-EM density maps have been deposited in the Electron Microscopy Data Bank under the accession number EMD-29861. Atomic coordinates for the atomic model have been deposited in the Protein Data Bank under the accession number 8G94. All other data needed to evaluate the conclusions in the paper are present in the paper and/or the supplementary materials. The following datasets were generated: ChenHLiX2023Structure of CD69-bound S1PR1 coupled to heterotrimeric GiRCSB Protein Data Bank8G94 ChenHLiX2023Structure of CD69-bound S1PR1 coupled to heterotrimeric GiEMBDEMD-29861,False,True,True dataset,10.1016_j.jbc.2023.105073,doi10.1016_j.jbc.2023.105073,Data availabilityAll relevant data are contained within the main article or supplemental information. Please email rsh@uthscsa.edu with requests for raw data or reagents.,False,True,False dataset,10.1038_s41598-019-40420-0,doi10.1038_s41598-019-40420-0,Data Availability ESBL or carbapenemase gene sequence data that support the findings of this study have been deposited into GenBank with the accession numbers listed in Table 1. The data that support the descriptive statistical analyses of sample characteristics and resistance gene presence are available from the corresponding author upon reasonable request.,False,True,True dataset,10.1088_1748-605x_acf90a,doi10.1088_1748-605x_acf90a,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s41398-023-02450-1,doi10.1038_s41398-023-02450-1,Data availabilityThe source data can be available from the corresponding authors on reasonable request.,True,True,False dataset,10.1126_sciadv.adg1671,doi10.1126_sciadv.adg1671,Data and materials availability: All data are available in the main text and/or the Supplementary Materials. The raw FASTQ files of the scRNA-seq and the processed files (output from CellRanger) are accessible through GEO (accession number: GSE224031). The code for data analyses is available on figshare (doi: 10.6084/m9.figshare.22490956) and via the link: https://figshare.com/s/ca568d8f44d020cb6389.,True,True,True dataset,10.1371_journal.ppat.1012032,doi10.1371_journal.ppat.1012032,Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files,False,True,True dataset,10.1111_jcmm.15814,doi10.1111_jcmm.15814,DATA AVAILABILITY STATEMENT The data that support the findings of this study are available on request from the corresponding author. The data are not publicly available due to privacy or ethical restrictions.,False,True,False dataset,10.1371_journal.pone.0285473,doi10.1371_journal.pone.0285473,Data Availability Statement All relevant data are available at: https://www.ebi.ac.uk/biostudies/studies/S-BSST1078.,False,True,False dataset,10.1088_2752-5295_acc08a,doi10.1088_2752-5295_acc08a,Data availability statementThe data that support the findings of this study are available upon request from the authors.,False,True,False dataset,10.1038_s41586-023-06157-7,doi10.1038_s41586-023-06157-7,Data availabilityThe authors declare that the data supporting the findings of this study are available within the paper and its supplementary information files. Sequencing data are available from the Sequencing Read Archive under BioProject identifiers PRJNA602546 and PRJNA867730. The raw data and all other datasets generated in this study are available from the corresponding authors upon reasonable request. Source data are provided with this paper.Code availabilityScripts and pipelines used for all sequencing data analysis and for image analysis are available at the GitHub online repository (https://github.com/chengzhongzhangDFCI/nature2023)47.,True,True,True dataset,10.1038_s41467-022-29759-7,doi10.1038_s41467-022-29759-7,Data availability The data generated in this study have been deposited in the figshare database under the accession code: https://doi.org/10.6084/m9.figshare.17026607.v1. Code availability Code used to analyse data in this manuscript are available from the corresponding author upon reasonable request.,False,True,True dataset,10.1186_s12875-021-01601-x,doi10.1186_s12875-021-01601-x,Availability of data and materials All major data generated or analysed during this study are included in this published article. Additional information can be provided on request.,False,True,False dataset,10.1371_journal.pgen.1010804,doi10.1371_journal.pgen.1010804,Data AvailabilityAll the relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1126_science.adg7883,doi10.1126_science.adg7883,Data and materials availability: The cryo-EM map has been deposited in the Electron Microscopy Data Bank with accession code EMD-40033. The coordinates for the atomic model have been deposited in the Protein Data Bank with accession code 8GH6. The raw cryo-EM data have been deposited in EMPIAR with accession code EMPIAR-11458.,True,True,True dataset,10.2196_39479,doi10.2196_39479,Data Availability Statement The data supporting the findings of this study are available from the corresponding author upon reasonable request.,False,True,False dataset,10.1088_2050-6120_acf97b,doi10.1088_2050-6120_acf97b,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pone.0238646,doi10.1371_journal.pone.0238646,Data Availability Statement All relevant data are within the paper.,False,True,False dataset,10.3389_fphy.2022.1005333,doi10.3389_fphy.2022.1005333,Data availability statement Publicly available datasets were analyzed in this study. This data can be found here: https://inspirehep.net.,False,True,False dataset,10.1371_journal.pcbi.1011928,doi10.1371_journal.pcbi.1011928,Data Availability Statement: Code can be downloaded from https://git.exeter.ac.uk/mv286/hormonebayes.,False,True,True dataset,10.1088_1367-2630_ad121c,doi10.1088_1367-2630_ad121c,Data availability statementAll data that supports the findings of this study are included within the article.,False,True,False dataset,10.1088_1361-665x_acf970,doi10.1088_1361-665x_acf970,Data availability statementThe data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1186_s40478-022-01399-4,doi10.1186_s40478-022-01399-4,Availability of data and materials The datasets that were used and analyzed during the current study are avail‐ able from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pone.0267316,doi10.1371_journal.pone.0267316,"Data Availability Statement Data were submitted to European Bioinformatic Institute, EBI (https://www.ebi.ac.uk/). The accession was assigned as ArrayExpress accession E-MTAB-11136. Additionally, this information is available as a footnote in Tables 2 and 3 of the manuscript.",False,True,True dataset,10.1371_journal.pone.0227835,doi10.1371_journal.pone.0227835,"Data Availability Statement: All serum biomarker values, imaging analysis results, and appropriate demographic data files are available via Open Science Framework: DOI 10.17605/OSF.IO/92ERQ.",False,True,False dataset,10.1371_journal.pone.0283603,doi10.1371_journal.pone.0283603,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.7554_elife.80854,doi10.7554_elife.80854,"Data availabilitySource files of all original gels and Western Blots were provided for the following figures: Figure 1—figure supplement 2B; Figure 4—figure supplement 1A, C, D, E; Figure 5—figure supplement 2B, F, G. RNA sequencing and ChIP sequencing data files that support the findings of this study have been deposited in the Gene Expression Omnibus under the accession code GSE85055, as well as in the Dryad digital repository (doi:10.5061/dryad.7pvmcvdwm; doi:10.5061/dryad.f1vhhmh0h). Sequences of sgRNAs, shRNAs, and primers used in this manuscript are included in the Supplementary File 1.",False,True,True dataset,10.1371_journal.pstr.0000097,doi10.1371_journal.pstr.0000097,Data Availability Statement: We have no data to report.,True,True,False dataset,10.1371_journal.pone.0287011,doi10.1371_journal.pone.0287011,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1371_journal.pone.0286598,doi10.1371_journal.pone.0286598,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1093_cvr_cvab085,doi10.1093_cvr_cvab085,Data availability The data underlying this article will be shared on reasonable request to the corresponding author.,False,True,False dataset,10.1007_s00220-023-04637-5,doi10.1007_s00220-023-04637-5,Data Availability Data sharing not applicable to this article as no datasets were generated or analysed during the current study.,False,True,False dataset,10.1038_s41467-023-37945-4,doi10.1038_s41467-023-37945-4,Data availability Whole genome bisulfite sequencing data are available at GenBank/NCBI under accession number GSE182212. RNA-sequencing data are available at GenBank / NCBI under accession number PRJNA780766. All other data are available as Source Data files as part of this publication. Source data are provided with this paper.,False,True,True dataset,10.1186_s12870-023-04147-5,doi10.1186_s12870-023-04147-5,"Availability of data and materialsThe datasets generated and/or analyzed during the current study are available in the NCBI repository, [ https://www.ncbi.nlm.nih.gov/bioproject/906276] [Accession number: PRJNA906276].",False,True,False dataset,10.1073_pnas.2221415120,doi10.1073_pnas.2221415120,"Data, Materials, and Software AvailabilityMatlab code and data have been deposited in Zenodo repositories (86, 87).",True,True,True dataset,10.1371_journal.pone.0251004,doi10.1371_journal.pone.0251004,Data Availability Statement All data files are available from the Open Science Framework (OSF) database. URL: https://osf.io/2zty9/.,False,True,False dataset,10.1371_journal.pgph.0001789,doi10.1371_journal.pgph.0001789,"Data Availability Statement The data presented here are from the Low Birthweight Infant Feeding Exploration (LIFE) study which is filed with Clinicaltrials.gov NCT04002908 and Clinical Trial Registry of India CTRI/2019/02/017475. De-identified individual participant data (including data dictionaries) will be made available, in addition to study protocols, and the informed consent form in a public, open access repository. The data will be made available upon publication through the Harvard Dataverse Platform under the BetterBirth Dataverse website. This can be found at: https://dataverse.harvard.edu/dataverse/BetterBirthData",False,True,False dataset,10.1371_journal.pone.0245201,doi10.1371_journal.pone.0245201,"Data Availability Statement All sequences are available from the GenBank database (accession number: MN816222, MN816223, MN816224, MN816225, MN816226, MN814829, MN814830, MN814831, MT012386 and MT012387). Other relevant data are within the paper and its Supporting Information files.",False,True,False dataset,10.1088_1361-6501_ad180f,doi10.1088_1361-6501_ad180f,Data availability statementThe data cannot be made publicly available upon publication due to legal restrictions preventing unrestricted public distribution. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pone.0260153,doi10.1371_journal.pone.0260153,"Data Availability Statement Data cannot be shared publicly because to do so could potentially identify our study participants and individual healthcare facilities, and assurances were given to respondents that any publication would not do so. Requests for access to the data underlying our findings will be considered by the National Ethical Committee of Public Health/CNES South Kivu province, and should be addressed to Prof Kitoka Moke at kitoka02@yahoo.fr.",False,True,False dataset,10.1371_journal.pone.0270817,doi10.1371_journal.pone.0270817,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pntd.0011435,doi10.1371_journal.pntd.0011435,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1088_1402-4896_ad03bf,doi10.1088_1402-4896_ad03bf,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1038_s41593-023-01332-5,doi10.1038_s41593-023-01332-5,Data availability Data from this study are available at https://github.com/axellaboratory/Cury_and_Axel_2023 and upon request. Trained pose estimation models and the supervised behavioral classifier can be accessed via Dropbox (https://www.dropbox.com/sh/jh4422f3ld95j1a/AAAHVb-pFsmcEk40BgSHm1TEa?dl=0).,False,True,True dataset,10.1038_s41598-019-41663-7,doi10.1038_s41598-019-41663-7,"Data Availability The datasets generated during and/or analyzed during the current study cannot be publicly available because they are owned by Yamagata Municipalities Mutual Aid Association and Sports Medical Research Center, Keio University. Please ask Sports Center of Keio University about data availability (http://sports.hc.keio.ac.jp/ja/).",False,True,False dataset,10.1186_s13071-020-3970-1,doi10.1186_s13071-020-3970-1,Availability of data and materialsThe RNA-seq data obtained in this study were deposited in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (https://www.ncbi.nlm.nih.gov/sra) under accession number SUB6209220.,False,True,False dataset,10.1038_s41467-023-38328-5,doi10.1038_s41467-023-38328-5,"Data availability The raw data from the prospective study, the raw scores of the retrospective analysis, the input structures and benchmarking scores for the efficiency study, and the raw data from the biolayer interferometry measurements are available at the following repository hosted by the Institute for Protein Design: The main supplement (136 MB) Contains these files: design_models_final_combo_optimized/ design_models_sequence/ design_models_ssm_natives/ design_stats/ dna_production_scripts/ figure_data/ ngs_analysis_scripts/ files.ipd.uw.edu/pub/improving_dl_binders_2023/supplemental_files/scripts_and_main_pdbs.tar.gz Experimental data and data derived from that data (155 MB) Contains these files: ngs_data/ ngs_data_analysis/ files.ipd.uw.edu/pub/improving_dl_binders_2023/supplemental_files/experimental_data_and_analysis.tar.gz All ordered proteins in.pdb.gz format: (~100 K files; 15 GB) Contains these files: design_models_pdbs/ files.ipd.uw.edu/pub/improving_dl_binders_2023/supplemental_files/design_models_pdb.tar.gz All ordered proteins in Rosetta binary silent format (6.1 GB) Contains these files: design_models_silent/ files.ipd.uw.edu/pub/improving_dl_binders_2023/supplemental_files/design_models_silent.tar.gz The docks we used for the efficiency benchmark (6.1 GB) Contains these files: efficiency_benchmark_docks/ files.ipd.uw.edu/pub/improving_dl_binders_2023/supplemental_files/efficiency_benchmark_docks.tar.gz. Source data are provided with this paper.",False,True,True dataset,10.1523_eneuro.0144-22.2022,doi10.1523_eneuro.0144-22.2022,Code accessibility The code is included as Extended Data 1 and is available at https://github.com/tsmanning/bayesIdealObserverMoG.,False,True,True dataset,10.3389_fimmu.2021.689397,doi10.3389_fimmu.2021.689397,"DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.",False,True,False dataset,10.1038_s41467-023-36872-8,doi10.1038_s41467-023-36872-8,Data availability Source data are provided within this paper. Raw data that support the findings of this study are available from the corresponding author upon request. Source data are provided with this paper.,False,True,False dataset,10.1371_journal.pone.0283491,doi10.1371_journal.pone.0283491,"Data Availability Statement Data cannot be shared publicly because we have used third-party data from National Health Insurance Service, and are not entitled to share the data. Data are available from the Review Board of National Health Insurance Service (contact via NHIS) for researchers who meet the criteria for access to confidential data. Anyone who conducts a joint study with a Korean researcher can access NHIS for customized health information data. Applications for data are available through National Health Insurance Data Sharing website (https://nhiss.nhis.or.kr/bd/ab/bdaba000eng.do), and additional information can be found at a customized health information data webpage (https://nhiss.nhis.or.kr/bd/ab/bdaba032eng.do).",False,True,True dataset,10.1371_journal.pone.0222639,doi10.1371_journal.pone.0222639,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0240995,doi10.1371_journal.pone.0240995,"Data Availability Statement The medical ethical technical committee of Erasmus MC did not grant permission to publish these data due to ethical considerations and the sensitivity of the data. Data are however available from the Erasmus MC upon reasonable request. Contact person: Dr. Juliëtte Severin, Infection prevention and control (IPC) and antimicrobial resistance (AMR) (Data Access) E-mail: info.microbiologie.infectieziekten@erasmusmc.nl.",True,True,False dataset,10.1126_scitranslmed.adh9917,doi10.1126_scitranslmed.adh9917,Data and Materials Availability:All data associated with this study are in the paper or supplementary materials. All reasonable requests for materials to the corresponding author will be fulfilled. The VirScan library is available from S.J.E. under a material transfer agreement with the Brigham and Women’s Hospital.,True,True,False dataset,10.1088_1748-3190_ad0dae,doi10.1088_1748-3190_ad0dae,Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pdig.0000457,doi10.1371_journal.pdig.0000457,Data Availability Statement: Data from this study has been made available as supplementary information.,False,True,False dataset,10.1371_journal.pone.0221212,doi10.1371_journal.pone.0221212,Data Availability Statement All relevant data for reproducing indicators are within the paper and the Supporting Information files. All these data have been downloaded from https://www.scival.com/ under provision of the institutional standard contract held by University of Siena. Authors did not have any special access privileges to SCIVAL. Interested researchers may access Scival in the same way the authors did.,False,True,False dataset,10.1371_journal.pntd.0011960,doi10.1371_journal.pntd.0011960,Data Availability Statement: The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1088_1361-6463_ad005f,doi10.1088_1361-6463_ad005f,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10,doi10,"Data availability The datasets, code for generating all figures, and Supplementary figures can be found at https://github.com/AndersenLab/swept_ broods. Supplementary File S1 contains the haplotype data of 403 C. elegans isotypes from CeNDR release 20200815. Supplementary File S2 contains genetic relatedness of 403 C. elegans isotypes. Supplementary File S3 contains lifetime fecundity of 121 C. ele- gans strains, their classification of swept strains and divergent strains, and the assay blocks of these strains. Supplementary File S4 contains daily fecundity and daily intrinsic growth rate of 121 C. elegans strains. Supplementary File S5 contains GWA results on lifetime fecundity of 121 C. elegans strains. Supplementary File S6 contains genotype and phenotype data of 121 C. elegans strains at the peak markers of GWA mapping. Supplementary File S7 con- tains the sampling locations of 121 C. elegans strains. Supplementary File S8 contains the GPS coordinates of sampling locations of 121 C. elegans strains. Supplementary File S9 contains lifetime fecundity and swept and divergent classifications of each of the four swept chromosomes for each of the 121 C. elegans strains. Supplementary File S10 contains LD results among the three QTL of GWA using 121 C. elegans strains. Supplementary File S11 contains the shared haplotypes of the 121 strains within the QTL of GWA mapping. Supplementary File S12 contains GWA results on fecundity data of 236 strains from a previous study (Hahnel et al. 2018). Supplementary File S13 contains genotype G. Zhang, J. D. Mostad, and E. C. Andersen | 3 and phenotype data of 236 strains at the peak marker of GWA mapping. Supplementary File S14 contains the shared haplotypes of the 236 strains within the QTL of GWA mapping. Supplementary File S15 contains the linkage mapping results for the 402 RIAILs in 1% water condition. Supplementary File S16 contains genotype and phenotype data of the 402 RIAILs at the peak markers and phenotype data of the parents in linkage map- ping results. Supplementary File S17 contains the linkage map- ping results for the 417 RIAILs in 1% DMSO condition. Supplementary File S18 contains genotype and phenotype data of the 417 RIAILs at the peak markers and phenotype data of the parents in linkage mapping results. Supplementary File S19 con- tains the linkage mapping results for the 432 RIAILs in 0.5% DMSO condition. Supplementary File S20 contains genotype and phenotype data of the 432 RIAILs at the peak markers and pheno- type data of the parents in linkage mapping results.",False,True,True dataset,10.1038_s41477-023-01439-4,doi10.1038_s41477-023-01439-4,Data availabilityImage data are available at http://neomorph.salk.edu/downloads/phytomap/. Sequences of all the DNA probes used in this study are provided in Supplementary Table 2. Processed and annotated scRNA-seq data is available at the Gene Expression Omnibus (GSE152766).Code availabilityThe code to analyse PHYTOMap data is available at https://github.com/tnobori/PHYTOMap.,False,True,True dataset,10.1088_1478-3975_acf5bd,doi10.1088_1478-3975_acf5bd,"Data availability statementThe data cannot be made publicly available upon publication because the cost of preparing, depositing and hosting the data would be prohibitive within the terms of this research project. The data that support the findings of this study are available upon reasonable request from the authors.",False,True,False dataset,10.1126_sciadv.adh0411,doi10.1126_sciadv.adh0411,Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials.,True,True,False dataset,10.1038_s41586-023-06271-6,doi10.1038_s41586-023-06271-6,"Data availabilityAll calcium imaging and fly behaviour time-course datasets analysed in the main figures are available on DANDI archive (calcium imaging data, 000247; fly choice tracking data, 000212; fly behavioural sequence tracking data, 000250). Technical documents (for example, CAD files and plasmid maps) and source data for all scatter plots and histograms are available on Figshare (10.6084/m9.figshare.c.6505732).Code availabilityScripts for data processing and plotting are available on request.",False,True,True dataset,10.1038_s41467-023-38867-x,doi10.1038_s41467-023-38867-x,"Data availabilityComplete genome sequences for the viral isolates cultured from nasal swabs (BA.1 and BA.1.23) are available in GenBank (accession numbers ON220548, ON220539, ON196014, ON193425, ON220529, ON220571, ON220533, ON934538, ON934577, ON934030, ON934607, ON854465, ON619382). RNA-seq data are available in the Sequence Read Archive (SRA), submission SUB12865927 under BioProject number PRJNA623586 (BioSample accession numbers SAMN33273632 - SAMN33273655). Datasets generated and/or analysed during the current study are appended as supplementary data. Source data are provided with this paper.Code availabilityThe vRAPID pipeline was developed for reference-based viral genome assembly of short-read sequencing data. The custom code is at vRAPID [https://zenodo.org/record/7829342].",False,True,True dataset,10.1126_sciadv.adi3088,doi10.1126_sciadv.adi3088,Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. The data for this study have been deposited in the database: https://doi.org/10.5281/zenodo.8161407.,True,True,False dataset,10.3390_s22093318,doi10.3390_s22093318,Data Availability StatementNot applicable.,False,True,False dataset,10.1371_journal.pone.0255090,doi10.1371_journal.pone.0255090,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pone.0261838,doi10.1371_journal.pone.0261838,Data Availability Statement All relevant data are within the manuscript and its Supporting information files.,False,True,True dataset,10.1016_j.celrep.2023.112621,doi10.1016_j.celrep.2023.112621,Data and code availability Cryo-EM maps and atomic models have been deposited at the Electron Microscopy DataBank and the Protein DataBank under the following accession codes: EMD: EMD-26058 and PDB: 7TPK (SARS-CoV-2 E406W RBD) and EMD: EMD-26056 and PDB: 7TPI (SARS-CoV-2 E406W Ectodomain). This paper does not report original code. Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.,False,True,True dataset,10.1186_s13071-019-3601-x,doi10.1186_s13071-019-3601-x,Availability of data and materials All data generated or analysed during this study are included in this published article. The datasets used and/or analysed during the present study available from the corresponding author upon reasonable request.,False,True,False dataset,10.1371_journal.pgph.0001413,doi10.1371_journal.pgph.0001413,Data Availability Statement The data supporting the results of this study are available within the article and the accompanying Supplementary material. The metadata described in this article are available in the Open Science Framework at http://osf.io/xec69.,False,True,False dataset,10.1002_acn3.51270,doi10.1002_acn3.51270,Data availability statement Deidentified data related to this study will be made available from the corresponding author upon request.,False,True,False dataset,10.1038_s41467-023-40788-8,doi10.1038_s41467-023-40788-8,Data availabilityThe NCBI non-redundant protein sequences (nr) database can be found at https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome. All other data supporting the findings of this study are available within the paper and its Supplementary Information. Source data are provided with this paper.,False,True,True dataset,10.1088_1402-4896_ad0f84,doi10.1088_1402-4896_ad0f84,Data availability statementNo new data were created or analysed in this study.,False,True,False dataset,10.1186_s12889-023-15729-1,doi10.1186_s12889-023-15729-1,Availability of data and materials The datasets used during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1088_1748-9326_ad13b7,doi10.1088_1748-9326_ad13b7,"Data availability statementThe NSIDC ice age version 4.1 (V4.1) data is freely distributed at https://nsidc.org/data/nsidc-0611/versions/4. The NSIDC ice motion V4.1 and sea ice concentration V1.1 products are used for the sea ice budget analyses and can be downloaded at https://nsidc.org/data/nsidc-0116/versions/4 and https://nsidc.org/data/nsidc-0051/versions/1, respectively. Open access monthly oceanic and atmospheric reanalysis: ORAS5 (www.copernicus.eu/en/access-data/copernicus-services-catalogue/reanalysis-oras5), ERA5 (www.ecmwf.int/en/forecasts/datasets/browse-reanalysis-datasets), NCEP/DOE R2 (https://psl.noaa.gov/data/gridded/data.ncep.reanalysis2.html). All data were accessed 18 August 2023. All data that support the findings of this study are included within the article (and any supplementary files).",False,True,True dataset,10.1371_journal.pone.0247356,doi10.1371_journal.pone.0247356,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1038_s41467-020-14824-w,doi10.1038_s41467-020-14824-w,Data availability The data generated during the study are available in a public repository (https://osf.io/mktdb/).,False,True,False dataset,10.1016_j.xcrm.2023.101003,doi10.1016_j.xcrm.2023.101003,Data and code availabilityThis paper does not report original code. NGS data have been deposited at NCBI sequence read archive (SRA) under accession numbers 32312762-32312784 and are publicly available as of the date of publication. The crystal structure reported in this manuscript has been deposited at the Protein Data Bank (PDB) under accession number 8E1P. Any additional information is available from the lead contacts upon request.,False,True,True dataset,10.1371_journal.pone.0252389,doi10.1371_journal.pone.0252389,Data Availability Statement All relevant data are within the manuscript and its S1 File.,False,True,True dataset,10.1088_1361-6501_ad0939,doi10.1088_1361-6501_ad0939,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.18063_ijb.v9i2.668,doi10.18063_ijb.v9i2.668,Availability of data The datasets used and analyzed during the present study can be obtained from the corresponding author on request.,False,True,False dataset,10.1371_journal.pgph.0003036,doi10.1371_journal.pgph.0003036,Data Availability Statement: Data are publicly available using the following Harvard Dataverse repository links: https://doi.org/10.7910/DVN/NTXO8M; https://doi.org/10.7910/DVN/RNLU3J; https://doi.org/10.7910/DVN/ETQZO2; https://doi.org/10.7910/DVN/ZF6SJE.,False,True,True dataset,10.1088_1367-2630_ad06da,doi10.1088_1367-2630_ad06da,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://github.com/fine-group-us/disordered-resetting.,False,True,True dataset,10.1016_j.isci.2022.105093,doi10.1016_j.isci.2022.105093,Data and code availability d All data reported in this paper will be shared by the lead contact upon request. d This paper does not report original code. d Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.,False,True,True dataset,10.1371_journal.pntd.0007421,doi10.1371_journal.pntd.0007421,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1186_s12877-021-02434-0,doi10.1186_s12877-021-02434-0,Availability of data and materials The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1038_s41590-023-01527-9,doi10.1038_s41590-023-01527-9,Data availabilityThe data supporting this publication have been deposited at ImmPort (https://www.immport.org) under study accession SDY2213. An h5ad file for CELLXGENE interactive data viewer is also available for download. Source data are provided with this paper.Code availabilityThe customized code used in the present study is publicly available at: https://github.com/viannegao/RA_Fibroblast_Multiome_Analysis.git,False,True,True dataset,10.1038_s41467-019-12557-z,doi10.1038_s41467-019-12557-z,"Data availability The data underlying all figures are provided as part of the Open Science Framework (OSF; https://osf.io/y325a; Digital Object Identifier (DOI): 10.17605/OSF.IO/Y325A). The OSF project contains a zip folder with all source Data files (.mat), a spreadsheet detailing the names of the source data files and all scripts relevant for producing the figures (make_figX.m). Unthresholded fMRI maps of all contrasts are available on Neurovault (https://identifiers.org/neurovault.collection:5765).",False,True,True dataset,10.3389_fonc.2022.895544,doi10.3389_fonc.2022.895544,"DATA AVAILABILITY STATEMENT The datasets studied for this study is collected from a clinical trial; due to PHI protection, the original image data cannot be published in the public domain. The studied deep learning design model will be available upon direct request to the corresponding author. Requests to access the datasets should be directed to chunhao.wang@duke.edu.",False,True,False dataset,10.1093_mnras_stab3539,doi10.1093_mnras_stab3539,"DATA AVAILABILITY All of the data presented in this paper are publicly available. The HST data can be found under the programme 15701 (PI S. Chap- man), the Spitzer-IRAC data can be found under the four pro- grammes 60194 (PI J. Vieira), 80032 (PI S. Stanford), 13224 (PI S. Chapman), and 14216 (PI S. Chapman), the Gemini-South data can be found under the programme GS-2017B-Q-7 (PI A. Chap- man), and the ALMA data can be found under the two programmes 2017.1.00273.S (PI S. Chapman) and 2018.1.00058.S (PI S. Chap- man).",False,True,False dataset,10.1371_journal.pone.0230651,doi10.1371_journal.pone.0230651,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0277927,doi10.1371_journal.pone.0277927,"Data Availability Statement All relevant data are within the paper and its Supporting information files. In Jordan, the engraved slab from Jibal al-Khashabiyeh is stored at the French Institute for the Near East (Ifpo, Amman) and is expected to be soon housed in the Hussein Bin Talal University exhibition room of the South-Eastern Badia Archaeological Project in Wadi Musa. In Saudi Arabia, the engraved boulder at Jebel az-Zilliyat has not been removed from its original location.",False,True,False dataset,10.1371_journal.pgph.0002801,doi10.1371_journal.pgph.0002801,"Data Availability Statement: The datasets upon which our findings are based belong to the US Centers for Disease Control and Prevention. For confidentiality reasons, the datasets are not publicly available. However, the data sets can be availed upon reasonable request from the secretariat of the Uganda Public Health Fellowship program at jnamagulu@musph.ac.ug, and with permission from the US Centers for Disease Control and Prevention.",False,True,True dataset,10.1371_journal.ppat.1011448,doi10.1371_journal.ppat.1011448,Data AvailabilityAll relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1186_s12879-021-06753-w,doi10.1186_s12879-021-06753-w,Availability of data and materialsThe datasets used and/or analyzed in the current study are available from the corresponding author upon reasonable request.,False,True,False dataset,10.14814_phy2.15703,doi10.14814_phy2.15703,DATA AVAILABILITY STATEMENT The data that support the findings of this study are avail- able from the corresponding author upon reasonable request.,False,True,False dataset,10.1371_journal.pone.0239702,doi10.1371_journal.pone.0239702,Data Availability Statement All SAXS data used in the analysis are available as supplementary data. The data averaged series with a 5.0 mg/ml protein concentration at pH 7.5 have been deposited in SASBDB (the Small Angle Scattering Biological Data Bank) as SASDHG6. The crystal structure has been deposited in the Protein Data Bank (PDB) as 6VE1.,False,True,True dataset,10.1371_journal.pbio.3002555,doi10.1371_journal.pbio.3002555,"Data Availability Statement: All relevant data are within the paper and its Supporting information files, and from OSF: https://osf.io/wzrdk/ and https://osf.io/sc7pr/. Raw sequencing reads available from the SRA database under accession PRJNA949791.",True,True,False dataset,10.1140_epjc_s10052-023-11191-w,doi10.1140_epjc_s10052-023-11191-w,"Data Availability Statement This manuscript has no associated data or the data will not be deposited. [Authors’ comment: All the results in this paper can be reproduced using the HEPfit package, publicly available at https://github.com/silvest/HEPfit/. The configuration file adopted for this study can be provided upon request.]",False,True,True dataset,10.1038_s41467-020-15693-z,doi10.1038_s41467-020-15693-z,"Data availability The data that support the findings of this study are available from the corresponding authors on request (total data size approximately 1 TB). The source data underlying Figs. 2, 3, and 4c–f are provided as a Source Data file. Code availability All computer code (in MATLAB) developed for this study is available from the corresponding authors on request.",False,True,True dataset,10,doi10,"Software: Athena (Stone et al. 2008), VisIt (Department Of Energy (DOE) Advanced Simulation & Computing Initiative (ASCI), 2011).",True,False,True dataset,10.3390_v14112464,doi10.3390_v14112464,"Data Availability Statement: All nonsimulated data on COVID-19’s development used in this paper were pulled from the tool developed in [33]. The tool aggregates data from a variety of data sources including the WHO, each state’s individual department of health, and the CDC. The data used included reports on case counts, active cases, and deaths within each individual U.S. state. We also include a direct link to the github for the tool here: https://github.com/CSSEGISandData/COVID-19 (accessed on 29 August 2022).",False,True,True dataset,10.1371_journal.pone.0241981,doi10.1371_journal.pone.0241981,"Data Availability Statement The mobile phone data at the antenna- and commune-level aggregated to the year 2013 including noisy antenna locations as well as instructions for replicating the study results have been added as part of the Supporting information. In order to access record-level mobile phone data and exact antenna locations, one would need to contact Sonatel directly and present the research project that would require the data (contact: Mr El Hadji Birahim Gueye, Direction des Systèmes d’information Sonatel, ebgueye@orange-sonatel.com or post mail: Orange-Sonatel, 46 Boulevard de la République, BP 69 Dakar, Senegal). GUF data cannot be shared publicly because third-party access conditions apply (for scientific, non-commercial use). However, it is available for research purposes under a data user agreement. For data access, please contact the German Aerospace Agency under guf@dlr.de (https://www.dlr.de/eoc/en/PortalData/60/Resources/dokumente/guf/DLR-GUF_LicenseAgreement-and-OrderForm.pdf). Census data used in the study cannot be shared publicly because third-party access conditions apply. However, it is available for research purposes under a data user agreement. For data access, please visit the microdata catalogue of the statistical office in Senegal (http://anads.ansd.sn/index.php/catalog/51) or send the inquiry to statsenegal@ansd.sn. All code required for replicating the findings of this study is fully available in the Supporting information of this submission (S1 and S2 Files) and under https://github.com/tilluz/geomatching_open.",False,True,True dataset,10.1371_journal.pone.0276413,doi10.1371_journal.pone.0276413,Data AvailabilityThe PDB file and structure factors for the structure reported in this paper are available from the RCSB database (PDB ID 8E4T) doi 10.2210/pdb8e4t/pdb,False,True,False dataset,10.1088_1361-648x_ad1217,doi10.1088_1361-648x_ad1217,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.5194_gmd-14-7155-2021,doi10.5194_gmd-14-7155-2021,"Code availability. The commented OMEN-SED-RCM source code (MATLAB) to this article is available for download in the two links provided below or see Pika and Hülse (2021). The specific version of the OMEN-SED model used in this pa- per is tagged as release v1.1, has been assigned a DOI of https://doi.org/10.5281/zenodo.4029488 (Hülse and Pika, 2021) and is hosted on GitHub. A version including the code to plot some of the presented results has the DOI of https://doi.org/10.5281/zenodo.4421777 (Pika and Hülse, 2021) and is hosted on GitHub. Data availability. Data sets used in this study are available from the studies cited in the text and figures.",False,True,True dataset,10.3389_fnbeh.2023.1111908,doi10.3389_fnbeh.2023.1111908,"Data availability statement The original contributions presented in the study are included in the article/Supplementary material, further inquiries can be directed to the corresponding authors.",False,True,False dataset,10.1186_s12882-021-02303-3,doi10.1186_s12882-021-02303-3,"Availability of data and materials The data support the findings of this study are available on request, with permission of the study group, DAK Gesundheit and SBK.",False,True,False dataset,10.1016_j.jbc.2022.102523,doi10.1016_j.jbc.2022.102523,"Data availability Coulomb potential maps were deposited in the Electron Microscopy Data Bank (EMDB) with accession numbers EMD-24964, EMD-26342, and EMD-26341, corresponding to retromer heterotrimer, dimers, and 3KE mutant particles. Substructure maps were deposited for C-VPS35 dimers as EMD-26343 and EMD-26345 and for the 3KE mutant as EMD-26340. The heterotrimer dataset was first reported very briefly (44), but its refinement and analysis are reported here. Coordinates for this updated retromer heterotrimer were deposited in the PDB as 7U6F.",False,True,True dataset,10.1242_bio.059967,doi10.1242_bio.059967,Data availability All data supporting this study have been made available in the Dryad Digital Repository (https://doi.org/10.5061/dryad.8sf7m0cth).,False,True,False dataset,10.1371_journal.pone.0283318,doi10.1371_journal.pone.0283318,"Data Availability Statement Due to the limitations of the consent provided by the subjects in our study, we cannot disclose the data to the public. Only researchers who have formally applied to and been approved by the human research ethics committee of Kyushu University Hospital can access the data (ijkseimei@jimu.kyushu-u.ac.jp).",False,True,False dataset,10.1371_journal.pmed.1004327,doi10.1371_journal.pmed.1004327,"Data Availability Statement: The data underlying the results presented in the study are hosted by the Hong Kong Hospital Authority. Due to local regulation, the data are not available to the public. Request for data can be made via Hong Kong Hospital Authority: https://www3.ha.org.hk/data.",True,True,False dataset,10.1371_journal.pwat.0000210,doi10.1371_journal.pwat.0000210,Data Availability Statement: All data can be found in the manuscript and the supporting information file.,False,True,True dataset,10.1088_1361-6501_ad0e3a,doi10.1088_1361-6501_ad0e3a,Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1088_1751-8121_ad02ec,doi10.1088_1751-8121_ad02ec,Data availability statementNo data were used to obtain the findings of this study/ Not applicable.,False,True,False dataset,10.1038_s41598-021-86143-z,doi10.1038_s41598-021-86143-z,Data availability The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1088_1748-9326_ad114a,doi10.1088_1748-9326_ad114a,Data availability statementNo new data were created or analysed in this study.,False,True,False dataset,10.1371_journal.pone.0239797,doi10.1371_journal.pone.0239797,Data Availability Statement Replication codes and data for this study have been uploaded to the Harvard Dataverse and can be accessed at: https://doi.org/10.7910/DVN/7WX5UU.,False,True,False dataset,10.1371_journal.pgph.0002467,doi10.1371_journal.pgph.0002467,Data Availability Statement: Our data came from four publicly available datasets: World Bank’s World Development Indicators; U.S. government’s foreignassistance.gov database; OECD Creditor Reporting System database; and the Institute of Health Metrics and Evaluation GBD Result’s Tool.,False,True,False dataset,10.1371_journal.pone.0250576,doi10.1371_journal.pone.0250576,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1088_1367-2630_ad1418,doi10.1088_1367-2630_ad1418,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pone.0270562,doi10.1371_journal.pone.0270562,"Data Availability Statement Data will be made available on request. The request can be sent to Ms. KV. Sripriya, administrative officer, Samarth. She can be contacted at admin@samarthngo.org.",False,True,False dataset,10.1088_1361-6463_ad10d4,doi10.1088_1361-6463_ad10d4,Data availability statementThe data that support the findings of this study are available from the corresponding author upon reasonable request.,False,True,False dataset,10.1371_journal.pgen.1010754,doi10.1371_journal.pgen.1010754,Data Availability Statement All DNA sequence files used for MFA analysis are available from NCBI (SRA accession number: PRJNA738450). Numerical data for qPCR are provided in Supplementary data.,False,True,False dataset,10.1371_journal.pbio.3002472,doi10.1371_journal.pbio.3002472,"Data Availability Statement: The raw sequencing reads for the metagenomic samples used in this study were downloaded from public repositories listed in the following publications: 10.1038/nature11209, 10.1038/nature11450, 10.1016/j.cels.2016.10.004, and 10.1101/gr.233940.117. Data underlying all figures, such as the numerical values of bar plots, can be found in 10.5281/zenodo.10304481. All other metadata, as well as the source code for the sequencing pipeline, downstream analyses, and figure generation are available at Zenodo (10.5281/zenodo.10368227) or GitHub (https://github.com/zhiru-liu/microbiome_evolution).",False,True,True dataset,10.1371_journal.pone.0284899,doi10.1371_journal.pone.0284899,Data Availability Statement All relevant data are within the paper and its Supporting Information file.,False,True,False dataset,10.1371_journal.pone.0217829,doi10.1371_journal.pone.0217829,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0256297,doi10.1371_journal.pone.0256297,Data Availability Statement The data was derived from the second and third wave of the China Health and Retirement Longitudinal Study (CHARLS) (data and documentation are available at http://charls.pku.edu.cn/).,False,True,False dataset,10.1371_journal.pcbi.1010680,doi10.1371_journal.pcbi.1010680,"Data AvailabilityAll data are available in the main text or as supplementary materials. Scripts, computational methods, and design models are available on GitHub at https://github.com/willsheffler/rpxdock. For O43-rpxdock-EK1, coordinates are deposited in the Protein Data Bank with the accession code 8FWD; the cryo-EM density map is deposited in the Electron Microscopy Data Bank (EMDB) with the accession code EMD-29502.",False,True,True dataset,10.1093_nar_gkad329,doi10.1093_nar_gkad329,DATA AVAILABILITY Raw sequencing data has been submitted to the NCBI SRA under accession numbers SRR19744356-SRR19744369. The corresponding BioSample accession numbers are SAMN29198687-SAMN29198700. Processed RNA-seq data are provided in the supplementary materials.,False,True,False dataset,10.1371_journal.pone.0260553,doi10.1371_journal.pone.0260553,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1016_j.celrep.2023.112657,doi10.1016_j.celrep.2023.112657,Data and code availabilityStructures and coordinates have been deposited in the Protein DataBank with identification number PDB: 8ENT. X-ray diffraction images have been deposited in the SBGrid DataBank with accession 974. Cryo-EM maps have been deposited to the Electron Microscopy DataBank (EMDB) under accession ID EMDB: EMD-28278.This paper does not report original code.,True,True,True dataset,10,doi10,"Data availability The coordinates and structure factors in this study have been deposited in the Protein Data Bank under accession codes 7KIH, 7KIL, and 7KIQ. The mass spectrometry proteomics data in this study have been deposited in the ProteomeXchange Consortium via the PRIDE partner repository45 with the dataset identifier PXD022172. Source data are provided with this paper.",False,True,True dataset,10.3390_ijms24129783,doi10.3390_ijms24129783,Data Availability StatementNot applicable.,False,True,False dataset,10.1186_s12867-019-0122-2,doi10.1186_s12867-019-0122-2,Availability of data and materials All data generated or analysed during this study are included in this article.,False,True,False dataset,10.1371_journal.pone.0244789,doi10.1371_journal.pone.0244789,Data Availability Statement All relevant data are within the manuscript.,False,True,False dataset,10.1371_journal.pbio.3000622,doi10.1371_journal.pbio.3000622,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pgen.1008228,doi10.1371_journal.pgen.1008228,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1021_acssynbio.3c00078,doi10.1021_acssynbio.3c00078,NotesPlasmids and their maps available for requests at Addgene (addgene.org/browse/article/28233817/). The key cell lines are available upon request. EM-Seq raw and processed data is deposited at Gene Expression Omnibus (GSE224403). Data and codes for analysis and generating figures are available at data.caltech (doi: 10.22002/ct5kt-cv878).,True,True,True dataset,10.1371_journal.pone.0284380,doi10.1371_journal.pone.0284380,Data Availability Statement All relevant data are within the manuscript and its Supporting information files.,False,True,True dataset,10.1088_1402-4896_ad0c14,doi10.1088_1402-4896_ad0c14,Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pclm.0000173,doi10.1371_journal.pclm.0000173,Data Availability Statement The data that support the findings of this study are openly available in Zenodo at http://doi.org/10.5281/zenodo.3524917. The codes can be retrieved from: https://git.idiv.de/fm58hufi/discounting-the-future.git.,False,True,True dataset,10.1371_journal.pone.0237574,doi10.1371_journal.pone.0237574,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1088_1402-4896_ad0695,doi10.1088_1402-4896_ad0695,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pgen.1011003,doi10.1371_journal.pgen.1011003,Data Availability Statement: All relevant data are within the paper and its Supporting Information files. The whole genome sequencing data are available at the Sequencing Read Archive (PRJNA1044129). Raw and processed mRNA-Seq data have been deposited in GEO (GSE236037).,False,True,True dataset,10.1186_s12961-020-00673-y,doi10.1186_s12961-020-00673-y,Availability of data and materialsQualitative data extracts are presented in the article to support the findings. The original transcripts are not available to the public as they may contain information that could compromise the confidentiality of study participants.,False,True,True dataset,10.1088_1361-6552_ad11f8,doi10.1088_1361-6552_ad11f8,Data availability statementThe data cannot be made publicly available upon publication because they contain sensitive personal information. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1016_j.cell.2023.06.002,doi10.1016_j.cell.2023.06.002,"Data and Code AvailabilityBulk-RNA seq and single cell RNA-seq data have been deposited at GEO (GSE211938, GSE212453) and are publicly available as of the date of publication.Codes used to process and analyze single-cell RNA-seq data are available at github.com/duncanmorgan/CAR_AgSpreading or Zenodo (10.5281/zenodo.7939518).",False,True,True dataset,10.1371_journal.pone.0250041,doi10.1371_journal.pone.0250041,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pntd.0010777,doi10.1371_journal.pntd.0010777,"Data Availability Statement All relevant data are within the manuscript and its Supporting Information files. Data sourced from existing, open-access, databases are fully referenced and accession numbers are provided in the manuscript and supporting files. Accession numbers for the datasets used are as follows: RNA (transcriptomic data), accessed via NCBI: PRJEB3116, ERR146941-ERR146961. Genomic data, accessed via WormBase ParaSite v8: PRJEB528, PRJEB125, PRJEB530, PRJEB525. Protein coding sequences (genome-derived proteomes), accessed via WormBase ParaSite v8: PRJNA72581, PRJEB4950, PRJNA13758, PRJDA72781, PRJEB503, PRJNA72135, PRJEB513, PRJEB515, PRJEB525, PRJEB530, PRJEB125, PRJEB528, PRJEB524, PRJNA170813, PRJEB535. Human genome pep file, via Ensembl: GRCh38. Proteomic data, accessed from Supplementary Table 19 in Hunt et al., 2016, doi: 10.1038/ng.3495.",False,True,True dataset,10.1371_journal.pone.0299479,doi10.1371_journal.pone.0299479,Data Availability Statement: The data underlying the results presented in the study are available from https://www.cdc.gov/nchs/nhanes/about_nhanes.htm,False,True,False dataset,10.1186_s12875-020-01171-4,doi10.1186_s12875-020-01171-4,Availability of data and materials Anonymised transcript data will be stored on the University of Bristol’s Research Data Service repository. Bona fide researchers will be able to access this data subject to a data access agreement and following approval from the University of Bristol Data Access Committee.,False,True,True dataset,10.1186_s13018-021-02394-6,doi10.1186_s13018-021-02394-6,Availability of data and materialsThe datasets used and analyzed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pone.0248381,doi10.1371_journal.pone.0248381,Data Availability Statement All relevant data are within the manuscript and its Supporting information files.,False,True,True dataset,10.1038_s41467-021-25740-y,doi10.1038_s41467-021-25740-y,"Data availabilityAll data generated in this study have been deposited in the OSF public repository (10.17605/OSF.IO/83WNU)80. Source data are provided with this paper. Code availabilityThe custom code used to analyze the data in this study (including the implementation used for the bGLS algorithm) and create all figures (except Figs. 1a, 3a, and 6a) is publicly available at Zenodo (10.5281/zenodo.4930034)81. Source data are provided with this paper.",False,True,True dataset,10.1371_journal.pone.0259135,doi10.1371_journal.pone.0259135,Data Availability Statement The dataset is available as supplementary material: https://figshare.com/s/01b2dd941d08b0fa6d9e).,False,True,False dataset,10.1371_journal.pone.0282823,doi10.1371_journal.pone.0282823,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0284364,doi10.1371_journal.pone.0284364,"Data Availability Statement VEGF measurements from the GENRES study and all data for the participants of the observational FinnDiane study are not publicly available and available only under restricted access due to ethical and legal reasons and due to the consent provided by the participant at the time of data collection. The data access, which is subject to local regulations, can be obtained upon reasonable request by contacting: Maaria Puupponen (email: maaria.puupponen@helsinki.fi), Research Program Coordinator, Clinical and Molecular Metabolism (CAMM), University of Helsinki. Upon approval, analysis needs to be performed on a user-specific local server (with protected access) and requires the applicant to sign non-disclosure and secrecy agreements. Cell culture experimental data is available as supplementary material.",False,True,True dataset,10.1186_s12870-023-04198-8,doi10.1186_s12870-023-04198-8,"Data AvailabilityThe mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE (http://www.ebi.ac.uk/pride) partner repository with the dataset identifier PXD036246 (project accession) and 10.6019/PXD036246 (project DOI).Note: The data is currently private, and can be accessed with reviewer account that has been created (Username: reviewer_pxd036246@ebi.ac.uk; Password: OYD2kgKf). It is only after paper is accepted, the PRIDE is to be notified and data will be public.",True,True,True dataset,10.1371_journal.pone.0295207,doi10.1371_journal.pone.0295207,Data Availability Statement: All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1080_02699931.2022.2157377,doi10.1080_02699931.2022.2157377,Data availability statement The data that support the findings of this research are openly available in the Open Science Framework (OSF) through this link https://osf.io/upb2h/?view_only=6eb16e9373c642f784254972f42b449c.,False,True,False dataset,10.15252_embj.2023113578,doi10.15252_embj.2023113578,"Data availabilityElectron tomography data were deposited to EMDB (EMD‐15268, http://www.ebi.ac.uk/pdbe/entry/EMD‐15268; EMD‐15244, http://www.ebi.ac.uk/pdbe/entry/EMD‐15244). Additional data and material related to this publication may be obtained upon request. Atomistic molecular dynamics simulations of initial structures and topology files were deposited to Zenodo (https://doi.org/10.5281/zenodo.7652685).",True,True,False dataset,10.1038_s41598-023-32039-z,doi10.1038_s41598-023-32039-z,Data availability The datasets generated during and/or during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1038_s41467-020-19120-1,doi10.1038_s41467-020-19120-1,Data availability The data that support the findings of this study are available from the corresponding author upon reasonable request. Code availability The codes that support the findings of this study are available from the corresponding author upon reasonable request.,False,True,True dataset,10.1038_s41477-023-01501-1,doi10.1038_s41477-023-01501-1,"Data availabilityThe RNA-seq raw sequencing and analysed data have been deposited in the NCBI Gene Expression Omnibus database under accession GSE218961 and GSE218962. Raw source 16S rRNA gene sequences from this project are available in the Sequence Read Archive database under BioProject PRJNA977816, accession numbers SAMN35534885 to SAMN35534914. QIIME-compatible SILVA 16S rRNA gene reference sequences and taxonomy (release 138) can be downloaded from https://docs.qiime2.org/2022.2/data-resources/. Source data are provided with this paper.Code availabilityThe code used for RNA-seq raw data analysis can be found at https://github.com/rsohrabi/MIP_ms. The entire sequence analysis workflow for 16S amplicon analysis is available at https://github.com/BradCP/A-critical-role-of-a-eubiotic-microbiota-in-gating-proper-immunocompetence-in-Arabidopsis.",False,True,True dataset,10.1016_j.isci.2023.106902,doi10.1016_j.isci.2023.106902,Data code and availabilityAll information required to reanalyze the data in this report is presented in the Supporting Information or from the lead contact upon request.,False,True,True dataset,10.1371_journal.pone.0286962,doi10.1371_journal.pone.0286962,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pbio.3002093,doi10.1371_journal.pbio.3002093,Data Availability Statement: All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1186_s12884-023-05590-w,doi10.1186_s12884-023-05590-w,"Availability of data and materials The current study utilizes a dataset made available through the California Center for Population Research at the University of California. The dataset has not been made publicly available but can be made available upon reasonable request and with permission of Dr. Randall Kuhn. These data will all be entering the public domain in the coming months, upon which we will gladly provide all code for this paper alongside that public release.",False,True,True dataset,10.1002/clc,doi10.1002/clc,DATA AVAILABILITY STATEMEN TThe authors confirm that all data underlying the findings are fullyavailable without restriction. The repository can be accessed online(https://biolincc.nhlbi.nih.gov/studies/aric/?q=aric).,False,True,False dataset,10.1038_s41551-023-01026-0,doi10.1038_s41551-023-01026-0,"Data availability All data supporting the results of this study are available within the paper and its Supplementary Information. High-throughput sequencing data are available from the NCBI Sequence Read Archive database (PRJNA915048). Key plasmids are available from Addgene (depositor: D.R.L.), or from the corresponding authors on request. Source data for the figures are provided with this paper.",False,True,False dataset,10.1371_journal.pntd.0008855,doi10.1371_journal.pntd.0008855,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pgen.1010774,doi10.1371_journal.pgen.1010774,Data AvailabilityRaw sequencing data have been deposited at Gene Expression Omnibus with accession number: GSE227356,False,True,False dataset,10.1186_s12964-020-00677-9,doi10.1186_s12964-020-00677-9,Availability of data and materials The datasets supporting the conclusions of this article are included within the article and its additional files.,False,True,False dataset,10.1126_sciadv.adg2239,doi10.1126_sciadv.adg2239,Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. Transcriptomic data were deposited to the Gene Expression Omnibus (GEO) database under accession number GSE224626.,True,True,False dataset,10.1371_journal.pone.0264329,doi10.1371_journal.pone.0264329,Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0285097,doi10.1371_journal.pone.0285097,"Data Availability Statement A de-identified data set is not possible to provide due to ethical and legal considerations. These sharing restrictions are imposed by the UNLV Institutional Board Review (IRB). The authors declare that a de-identified data set from this study are available upon request directly to Dr. Buccini, assistant professor at UNLV (gabriela.buccini@unlv.edu) and/or to the UNLV IRB (irb@unlv.edu).",True,True,False dataset,10.1371_journal.pone.0242591,doi10.1371_journal.pone.0242591,"Data Availability Statement The complete chloroplast genomes have been submitted to NCBI under GenBank accession numbers of MT890968, MT898000 and MT898001. All other relevant data are within the paper and its Supporting Information files.",False,True,False dataset,10.1093_beheco_arad033,doi10.1093_beheco_arad033,DATA AVAILABILITY Analyses reported in this article can be reproduced using the data provided by Piekarski et al. (2023).,False,True,False dataset,10.1371_journal.pgen.1010706,doi10.1371_journal.pgen.1010706,"Data Availability All mutant lines are available upon request to the following email address: front_desk@biochem.wisc.edu (Department of Biochemistry, University of Wisconsin) with no restrictions.",False,True,False dataset,10.1371_journal.pone.0208701,doi10.1371_journal.pone.0208701,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1038_s41541-023-00711-0,doi10.1038_s41541-023-00711-0,Data availabilityAll data generated in this study are available from the corresponding author upon reasonable request.,True,True,False dataset,10.1038_s41467-019-11549-3,doi10.1038_s41467-019-11549-3,"Data availability The source data for blots and bar graphs underlying Figs. 1c, d, 2a, c, d, 3b, 4, 5b, and Supplementary Figs 2, 4, 5, 6, 7, 8c, d, 9 and 10 are provided as a Source Data file. A reporting summary for this article is available as a Supplementary Information file. All other data are available from the corresponding authors on reasonable request.",False,True,False dataset,10.1186_s13567-021-00981-3,doi10.1186_s13567-021-00981-3,Availability of data and materials The datasets analyzed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.3389_fmolb.2022.1074714,doi10.3389_fmolb.2022.1074714,"Data availability statement Publicly available datasets were analyzed in this study. This data can be found here: The link to the AlphaFold structure, https://www. uniprot.org/uniprotkb/A0A804HIU0/entry; PDB 5V44, https://wwwrcsb.org/structure/5V44; PDB 5V46, https://www.rcsb.org/structure/ 5V46 and 2CG9, https://www.rcsb.org/structure/2CG9.",False,True,False dataset,10.1126_sciadv.adi1870,doi10.1126_sciadv.adi1870,Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. All plasmid sequences used in this paper are available at http://web.stanford.edu/group/dlab/optogenetics/index.html.,True,True,False dataset,10.1371_journal.pone.0224813,doi10.1371_journal.pone.0224813,Data Availability Statement All relevant data are within the paper.,False,True,False dataset,10.1371_journal.pone.0217938,doi10.1371_journal.pone.0217938,"Data Availability Statement All relevant data are within the manuscript, Supporting Information files, and on the Dryad data repository (doi:10.5061/dryad.6363669).",True,True,False dataset,10.1088_1361-6528_ad13bb,doi10.1088_1361-6528_ad13bb,Data availability statementAll the data are presented in terms of figures or tables. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1186_s12891-023-06492-w,doi10.1186_s12891-023-06492-w,Data Availability The datasets for the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1080_15592294.2023.2222244,doi10.1080_15592294.2023.2222244,"Data availability statementThe data that support the findings of this study are available on request from the co-authors [DN, CM]. The data are not publicly available due to restrictions; however, data will be released in 2023 per the NIH data guidelines. Survey data for the Future of Families and Child Wellbeing study can be accessed at https://ffcws.princeton.edu/.",False,True,False dataset,10.1073_pnas.2217885120,doi10.1073_pnas.2217885120,"Data, Materials, and Software Availability All study data are included in the article and SI Appendix.",True,True,True dataset,10.1038_s41586-023-06034-3,doi10.1038_s41586-023-06034-3,"Data availabilityDownloadable summary data are available through the GenOMICC data site (https://genomicc.org/data). Summary statistics are available, but without the 23andMe summary statistics, except for the 10,000 most significant hits, for which full summary statistics are available. The full GWAS summary statistics for the 23andMe discovery dataset will be made available through 23andMe to qualified researchers under an agreement with 23andMe that protects the privacy of the 23andMe participants. For further information and to apply for access to the data, see the 23andMe website (https://research.23andMe.com/dataset-access/). All individual-level genotype and whole-genome sequencing data (for both academic and commercial uses) can be accessed through the UKRI/HDR UK Outbreak Data Analysis Platform (https://odap.ac.uk). A restricted dataset for a subset of GenOMICC participants is also available through the Genomics England data service. Monocyte RNA-seq data are available under the title ‘Monocyte gene expression data’ within the Oxford University Research Archives (10.5287/ora-ko7q2nq66). Sequencing data will be made freely available to organizations and researchers to conduct research in accordance with the UK Policy Framework for Health and Social Care Research through a data access agreement. Sequencing data have been deposited at the European Genome–Phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001007111.Code availabilityCode to calculate the imputation of P values on the basis of SNPs in linkage disequilibrium is available at GitHub (https://github.com/baillielab/GenOMICC_GWAS).",False,True,True dataset,10.1371_journal.pgph.0000200,doi10.1371_journal.pgph.0000200,"Data Availability Statement The data are freely available for public access in the GOV.BR repository. It is maintained by the Brazilian government, with access available to anyone, without any cost and restrictions. The data are publicly available from https://opendatasus.saude.gov.br/dataset/srag-2020.",False,True,False dataset,10.1371_journal.pone.0233613,doi10.1371_journal.pone.0233613,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1016_j.jbc.2023.104755,doi10.1016_j.jbc.2023.104755,Data availabilityThe mass spectrometry proteomics data for Figure 3 have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository (46) with the dataset identifier PXD035664.,False,True,False dataset,10.1371_journal.pone.0211402,doi10.1371_journal.pone.0211402,"Data Availability Statement All relevant data are available from https://finance.yahoo.com. To search for a data set, type the target company name in the search box, click the ""Historical Data"" tab, and select the desired time period. Then, set ""Show"" to ""Historical Process"" and ""Frequency"" to ""Daily"". Once the data set loads, you may hit ""Apply"" and download and utilize the data.",False,True,False dataset,10.1371_journal.pone.0287250,doi10.1371_journal.pone.0287250,"Data Availability Statement NOAA landings data are considered confidential, including the economic information. However, properly aggregated data can be found at https://repository.library.noaa.gov/.",False,True,False dataset,10.1371_journal.pone.0229744,doi10.1371_journal.pone.0229744,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1016_j.jbc.2023.105109,doi10.1016_j.jbc.2023.105109,Data availabilityAtomic coordinates have been deposited in the Protein Data Bank under accession codes 8SSL and 8STA. The cryo-EM density maps have been deposited in the Electron Microscopy Data Bank under accession number EMD-40751 and EMD-40758.,True,True,True dataset,10.3390_ijms241210104,doi10.3390_ijms241210104,Data Availability StatementData are available upon request.,False,True,False dataset,10.1088_1402-4896_ad1237,doi10.1088_1402-4896_ad1237,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.3389_fnbeh.2022.835753,doi10.3389_fnbeh.2022.835753,"4.8. Code Availability The code for both our simulations and statistical analysis, can be downloaded from: https://github.com/drahcir7/bottleneck- behaviors. DATA AVAILABILITY STATEMENT The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding author/s.",False,True,True dataset,10.1088_2632-2153_ad13b9,doi10.1088_2632-2153_ad13b9,"Data availability statementThe data that support the findings of this study are openly available at the following URL: https://rodare.hzdr.de/record/2289. The code required to run the AA calculations, and train and test the neural networks, is available at the following URL: https://github.com/atomec-project/neuralEOS. The FPEOS database of Militzer et al can be downloaded from the supplementary material of [28]. The FPEOS Be data from Ding and Hu can be requested from the authors of [29], as stated in that paper.",False,True,True dataset,10.3390_ijms22126253,doi10.3390_ijms22126253,Data Availability Statement: Data are available via ProteomeXchange with identifier PXD025286.,False,True,False dataset,10.1371_journal.pgen.1008923,doi10.1371_journal.pgen.1008923,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1088_1361-6587_ad1654,doi10.1088_1361-6587_ad1654,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://doi.org/10.14468/1hgs-ys59 [56].,False,True,False dataset,10.1371_journal.pclm.0000325,doi10.1371_journal.pclm.0000325,Data Availability Statement: The CRU interpolated dataset can be found at “Dataset Record: CRU TS4.05: Climatic Research Unit (CRU) Time-Series (TS) version 4.05 of high-resolution gridded data of month-by-month variation in climate (January 1901–December 2020) (ceda.ac.uk)”; the weather stations dataset can be found at “INAM—National Institute of Meteorology”. The future climate scenarios can be found at IPCC home page.,False,True,False dataset,10.1016_j.immuni.2023.03.005,doi10.1016_j.immuni.2023.03.005,"Data and code availability The data supporting the findings of this study are available within the published article and summarized in the corresponding tables, figures, and supplemental materials. Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.",False,True,True dataset,10,doi10,Availability of data and materials The datasets used and analyzed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pgen.1008935,doi10.1371_journal.pgen.1008935,Data Availability Statement Data and genome assemblies generated in this study are available through NCBI BioProject number PRJNA562081 (BioSample numbers listed in S1 Table). Code written and used in our analyses is available from https://github.com/shelbirussell/ForeverYoungGenomes_Russell-et-al. Underlying numerical data for all graphs and summary statistics are available as Supporting Information.,False,True,True dataset,10.3389_fncom.2022.917786,doi10.3389_fncom.2022.917786,"DATA AVAILABILITY STATEMENT The data analyzed in this study is subject to the following licenses/restrictions: the data is available by request from the original authors. Requests to access these datasets should be directed to Elissa Hallem, ehallem@ucla.edu.",False,True,False dataset,10.1073_pnas.2309151120,doi10.1073_pnas.2309151120,"Data, Materials, and Software AvailabilityAll study data are included in the article and/or SI Appendix. STAMPR code is available at https://github.com/hullahalli/stampr_rtisan (13).",True,True,True dataset,10.1371_journal.pntd.0011973,doi10.1371_journal.pntd.0011973,"Data Availability Statement: Representative sequences were deposited in GenBank (https://www.ncbi.nlm.nih.gov/genbank) (accession number OR753376 for gltA; OR755903 to OQ630505 for 16S rRNA; OQ632771 to OQ632773, OR771463 to OR771475 and OR771476-OR771477 for 18S rRNA; OQ672452, OR758867, OR761977, OR761978 and for OR763078 cox1).",False,True,False dataset,10.1186_s43058-023-00433-3,doi10.1186_s43058-023-00433-3,Availability of data and materials The datasets generated and analyzed during the study are not publicly available due to the sensitive nature of some data. The cost dataset is available from the corresponding author upon reasonable request. All other data are available from the C3I coordinating center on reasonable request.,False,True,True dataset,10.1088_2631-8695_ad0c8b,doi10.1088_2631-8695_ad0c8b,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1088_2053-1591_ad020f,doi10.1088_2053-1591_ad020f,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1088_1361-6501_ad1578,doi10.1088_1361-6501_ad1578,Data availability statementThe data generated and/or analyzed during the current study are not publicly available for legal/ethical reasons but are available from the corresponding author on reasonable request.,False,True,False dataset,10.1088_1361-6498_ad1159,doi10.1088_1361-6498_ad1159,Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10,doi10,Data Availability Statement: Data are neither finalized nor currently available to the public. Data sharing is not applicable to this article.,False,True,False dataset,10.1038_s41467-023-40530-4,doi10.1038_s41467-023-40530-4,Data availabilityThe mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD043260. Images are available from the corresponding author upon request. Source data are provided with this paper.,True,True,True dataset,10.1371_journal.pcbi.1011164,doi10.1371_journal.pcbi.1011164,"Data Availability Statement: All relevant data are within the paper, its Supporting Information files, and on Zenodo (DOI: 10.5281/zenodo.7900141). The Brainwave software, which was used to generate and analyze the data is available at https://github.com/CornelisStam/BrainWave.",False,True,True dataset,10.1186_s12964-023-01131-2,doi10.1186_s12964-023-01131-2,Availability of data and materials All data generated or analyzed during this study are included in this article and its supplementary file.,False,True,False dataset,10.1186_s40359-023-01196-1,doi10.1186_s40359-023-01196-1,Availability of data and materials Data is available on request from the corresponding author.,False,True,False dataset,10.1088_1361-6463_ad0bc5,doi10.1088_1361-6463_ad0bc5,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1007_s00122-023-04369-z,doi10.1007_s00122-023-04369-z,Data availability statement The BAC sequences and raw sequencing data reported in this study are available in the GenBank database as accession numbers QQ503488 and PRJNA932462. Data supporting the findings of this study are within the manuscript or the supplementary file.,False,True,True dataset,10.1088_1402-4896_ad0337,doi10.1088_1402-4896_ad0337,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1088_1748-9326_ad0d39,doi10.1088_1748-9326_ad0d39,Data availability statementThe data that support the findings of this study will be openly available following an embargo at the following URL/DOI: https://github.com/josemrodriguezf/Domestic_Dry_Wells.,False,True,True dataset,10.1371_journal.pone.0243209,doi10.1371_journal.pone.0243209,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.3390_ijms241210404,doi10.3390_ijms241210404,Data Availability StatementNot applicable.,False,True,False dataset,10.1371_journal.pone.0221824,doi10.1371_journal.pone.0221824,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1088_1361-6560_acfec3,doi10.1088_1361-6560_acfec3,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary information files).,False,True,False dataset,10.1371_journal.pone.0286311,doi10.1371_journal.pone.0286311,Data Availability Statement The dataset is available from the Mendeley database (10.17632/mpph6bmn7g.1.) and code is available on GitHub (https://github.com/mmarcato/dog_posture.,False,True,True dataset,10.1186_s13048-020-00624-9,doi10.1186_s13048-020-00624-9,"Availability of data and materials The datasets generated and/or analyzed in the current study are not publicly available in order to prevent compromise of individuals’ privacy. However, the data are available from the corresponding author upon reasonable request.",False,True,False dataset,10.1016/j.celrep.2021,doi10.1016/j.celrep.2021,"Data and code availability • RNA-seq, ATAC-seq, ChIP-seq, and CUT&RUN data generated for this study have been deposited to GEO and dbGAP and are publicly available as of the date of publication. Accession numbers are listed in the key resources table. Any additional information required to access and analyze the data reported in this paper is available from the lead contact upon request. • This paper does not report original code. • Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.",False,True,True dataset,10.3390_insects14020130,doi10.3390_insects14020130,"Data Availability Statement: Data associated with this manuscript are accessible at Figshare https://www.mdpi.com/1999-4893/16/2/112 (Balfour and Ratnieks, 2022).",False,True,True dataset,10.1186_s13756-019-0596-1,doi10.1186_s13756-019-0596-1,"Availability of data and materialsDraft whole-genome sequences of the SCNJ1 strain has been deposited into GenBank under the accession no. SPSD00000000. The complete sequences of pVir-SCNJ1 and pNDM5-SCNJ1 have been deposited into GenBank under accession no. MK715436 and MK715437, respectively.",False,True,True dataset,10.3390_ijerph20126087,doi10.3390_ijerph20126087,Data Availability Statement No new data were created or analyzed in this study. Data sharing is not applicable to this article.,False,True,False dataset,10.3390_cells10112855,doi10.3390_cells10112855,Data Availability StatementNot applicable.,False,True,False dataset,10.1371_journal.pgen.1011192,doi10.1371_journal.pgen.1011192,"Data Availability Statement: HostSeq sequencing and clinical data are available through a Data Access Agreement and Data Access Compliance Office (DACO) approval (https://www.cgen.ca/daco-main). The subset of HostSeq data (N = 8,474) that was analysed here can be made available upon DACO approval. The code used for conducting GWAS, G x Sex interaction, SKAT-O, and PRS can be found in a publicly accessible repository (https://github.com/eg-r/HostSeq). HostSeq and HGI7no GWASes are available via myLocusZoom (HostSeq: https://my.locuszoom.org/gwas/570140/?token=18b0349bf40545cda7a92ce665219a89, HGI7no: https://my.locuszoom.org/gwas/477715/?token=c297add610b040b58e732228855cfb7f). For HostSeq, summary statistics from the primary regenie GWAS are provided for all variants passing the MAF > 0.05, excluding the GIAB difficult-to-sequence regions. For HGI7no, summary statistics for all HGI7 variants are provided for the B1 contrast after meta-subtract (leaving out BQC19, CGEN and 23andMe).",False,True,True dataset,10.1371_journal.pgph.0002772,doi10.1371_journal.pgph.0002772,Data Availability Statement: All underlying data are available in the manuscript or supporting materials.,False,True,True dataset,10.1371_journal.pcbi.1011899,doi10.1371_journal.pcbi.1011899,Data Availability Statement: All relevant data are within the manuscript and its Supporting information files. The code is made available on GitHub (https://github.com/Hallatscheklab/Self-Consistent-Metapopulations).,False,True,True dataset,10.1371_journal.pone.0234773,doi10.1371_journal.pone.0234773,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1128_mBio.02371-20,doi10.1128_mBio.02371-20,"Data availability The genomes analyzed in this study are publicly available in NCBI or IMG/JGI databases, and all accession numbers are given in Table S1A. All data generated in this study are provided in Tables S1 to S4, and generated phylogenetic trees are in Data Set S1.",False,True,False dataset,10.1186_s12974-023-02805-x,doi10.1186_s12974-023-02805-x,Availability of data and materials The datasets used during the current study are available from the corresponding author upon reasonable request.,False,True,False dataset,10.1371_journal.pone.0220840,doi10.1371_journal.pone.0220840,Data Availability Statement All relevant data are within the paper.,False,True,False dataset,10.1371_journal.pone.0299141,doi10.1371_journal.pone.0299141,"Data Availability Statement: Data collected as part of this research will be available to established investigators presenting appropriate scientific and ethical proposal approval documentation. All de-identified subject data and the oral informed consent text will be available with publication of this communication. The contact person for data access committee, ethics committee, or other institutional requests may be sent is: Sanju Maharjan Programme Manager Health Unit Email: sanju@anweshan.org.",True,True,False dataset,10.1038_s41467-020-19904-5,doi10.1038_s41467-020-19904-5,"Data availability Data supporting the findings of this study are available within the article, Supplementary Information and Source Data, and are available from the corresponding author on request. Source data are provided with this paper. Code availability The MATLAB and COMSOL files used for this research are openly available on Github (https://github.com/EoinMcEvoy).",False,True,True dataset,10,doi10,Data Availability Statement This manuscript has no associated data or the data will not be deposited. [Authors’ comment: Data will be shared by the authors upon request.],True,True,True dataset,10.1371_journal.pone.0263124,doi10.1371_journal.pone.0263124,Data Availability Statement All relevant data are within the paper.,False,True,False dataset,10.1002_nop2.667,doi10.1002_nop2.667,"DATA AVAILABILITY STATEMENTAs this is a protocol, there are no participant data. However, to support use of this protocol by other researchers we are providing five supplementary documents which are referenced in text.",False,True,False dataset,10.1088_2515-7620_acf363,doi10.1088_2515-7620_acf363,Data availability statementThe data cannot be made publicly available upon publication because they contain commercially sensitive information. The data that support the findings of this study are available upon reasonable request from the authors. https://data.sccer-jasm.ch/.,False,True,False dataset,10.5194_os-18-953-2022,doi10.5194_os-18-953-2022,"Code and data availability. The ECCOv4-r3 data can be found at https://ecco.jpl.nasa.gov/drive/files/Version4/Release3 (last access: June 2018), and the ECCOv4-r4 data can be found at https://ecco.jpl.nasa.gov/drive/files/Version4/Release4/ (last access: January 2021) (https://doi.org/10.5281/zenodo.3765929, ECCO Consortium et al., 2021). ECCO Version 4 is described by Forget et al. (2015a), and ECCO Version 4 releases 3 and 4 are described by Fukumori et al. (2017) and ECCO Consortium et al. (2021) respectively. The HadISST observational data can be found at https://www.metoffice.gov.uk/hadobs/hadisst/data/download.html and are described by Rayner et al. (2003). EN.4.2.2 data were obtained from https://www.metoffice.gov.uk/hadobs/en4/ (Met Office Hadley Centre, 2019) and are © British Crown Copy- right, Met Office, 2022, provided under a Non-Commercial Government Licence http://www.nationalarchives.gov.uk/doc/ non-commercial-government-licence/version/2/ (last access: January 2019).",False,True,True dataset,10.3390_ijms22073558,doi10.3390_ijms22073558,Data Availability StatementThe data presented in this study are available on request from the corresponding author. The data are not publicly available due to it includes personal data of patients.,False,True,False dataset,10.1186_s12887-021-02768-z,doi10.1186_s12887-021-02768-z,"Availability of data and materials Please contact to Meng-Chih Lee, E-Mail: mengchihlee@gmail.com",False,True,False dataset,10.1007_s10549-023-06998-w,doi10.1007_s10549-023-06998-w,Data availabilityeAdditional data are available on request from the authors.,True,True,False dataset,10.3390_ijms22031055,doi10.3390_ijms22031055,Data Availability Statement Not applicable.,False,True,False dataset,10.1371_journal.ppat.1011421,doi10.1371_journal.ppat.1011421,Data Availability Statement All data are in the manuscript and/or supporting information files.,False,True,True dataset,10.1088_2515-7639_acef98,doi10.1088_2515-7639_acef98,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.ppat.1011304,doi10.1371_journal.ppat.1011304,"Data Availability Statement All relevant data are within the paper and its Supporting information files. Primary datasets have been generated and deposited in the Research Data Deposit (RDD) bank (http://www.researchdata.org.cn), with the approval RDD number RDDB2023226947.",False,True,False dataset,10.1371_journal.pone.0300377,doi10.1371_journal.pone.0300377,Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1186_s12866-019-1421-y,doi10.1186_s12866-019-1421-y,"Availability of data and materials The genome sequence of Mycobacterium immunogenum strain CD11_6 has been deposited at DDBJ/EMBL/GenBank under project accession number LQYE00000000. The version described in work is the first version, LQYE00000000.1.",True,True,False dataset,10.1088_1361-648x_acfadc,doi10.1088_1361-648x_acfadc,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pwat.0000071,doi10.1371_journal.pwat.0000071,Data Availability Statement All data used to develop this study’s findings are included in the manuscript and supporting information.,False,True,True dataset,10,doi10,Availability of data and material Experimental data will be made available upon reasonable request.,False,True,False dataset,10.1371_journal.pone.0283965,doi10.1371_journal.pone.0283965,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1371_journal.pwat.0000181,doi10.1371_journal.pwat.0000181,Data Availability Statement: Raw data is publicly deposited on the USEPA's ScienceHub website (https://catalog.data.gov/harvest/epa-sciencehub). The Illumina raw sequence reads are deposited in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database under the BioProject accession number PRJNA871216 (Temporary Submission ID: SUB11952375 Release date: 2023-10-31). https://www.ncbi.nlm.nih.gov/sra/.,False,True,True dataset,10.1088_1748-9326_acff79,doi10.1088_1748-9326_acff79,"Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files). Required: A statement that indicates to the reader where the data supporting the conclusions can be obtained. The CMIP6, CMAP, MSWEP, ERA5 and JRA55 data used in this paper are from these websites (https://esgf-node.llnl.gov/search/cmip6/, www.esrl.noaa.gov/psd/data/gridded/data.cmap.html, www.gloh2o.org/mswep/, https://cds.climate.copernicus.eu/#!/search?text=ERA5%26type=dataset, https://jra.kishou.go.jp/JRA-55/index_en.html#jra-55)",False,True,False dataset,10.15252_embr.202256404,doi10.15252_embr.202256404,Data availability GEO accession number for the single‐cell RNA‐seq (sc RNA‐seq) data is GSE228292 (URL: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228292). Our analysis of the sc RNA‐seq data is available (URL: https://github.com/ringw/Drosophila-Intestinal-Stem-Cell-Divisions-2023).,False,True,True dataset,10.1002_jcv2.12126,doi10.1002_jcv2.12126,DATA AVAILABILITY STATEMENT The datasets generated during and/or analysed during the current study are not publicly available but access can be requested via a proposal to the ALSPAC study team.,False,True,False dataset,10.1088_1758-5090_acee22,doi10.1088_1758-5090_acee22,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s41564-023-01389-9,doi10.1038_s41564-023-01389-9,"Data availability The atomic model and cryo-EM map generated for the 05B04-hACE2 complex have been deposited at the Protein Data Bank (PDB) (http://www.rcsb.org/) and the Electron Microscopy Databank (EMDB) (http://www.emdataresource.org/) under accession codes 8E7M and EMD-27939, respectively. All other numerical data are in the accompanying source data files and have been deposited with Figshare (10.6084/m9.figshare.22572892).",False,True,True dataset,10.1038_s41598-020-70934-x,doi10.1038_s41598-020-70934-x,Data availability The data and materials used in this manuscript are available through request to the corresponding author.,False,True,True dataset,10.1371_journal.pone.0299837,doi10.1371_journal.pone.0299837,Data Availability Statement: The data are available at https://www.kaggle.com/datasets/avaytt/reddit-messages-from-selected-universities/data.,False,True,False dataset,10.7554_elife.83884,doi10.7554_elife.83884,Data availabilityAll data generated or analyzed during this study are included in the manuscript and supporting files; Unprocessed data for Supplementary File 3 has been provided in Source data 1.,False,True,True dataset,10.1016_j.neuron.2021.05.002,doi10.1016_j.neuron.2021.05.002,Data and code availability The data and custom code that support the findings from this study are available from the lead contact upon request.,False,True,True dataset,10.1038_s41467-023-37263-9,doi10.1038_s41467-023-37263-9,"Data availability Source data of Figs.1a and 6c, and Supplementary Figs. 1a and 11b are provided with this paper. All the high-throughput sequencing data generated in this study are accessible at NCBI’s Gene Expression Omnibus (GEO) via GEO Series accession number GSE204681. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the MassIVE partner repository, and the accession number is MSV000091349. Source data are provided with this paper.",False,True,True dataset,10.1371_journal.pcbi.1011796,doi10.1371_journal.pcbi.1011796,Data Availability Statement: All data and code used for running experiments and plotting is available on a GitHub repository at https://github.com/kronga/vision-based-collective-model.,False,True,True dataset,10.1371_journal.pone.0286685,doi10.1371_journal.pone.0286685,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1088_1751-8121_ad0a71,doi10.1088_1751-8121_ad0a71,Data availability statementThe data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1038_s41467-023-39332-5,doi10.1038_s41467-023-39332-5,"Data availabilityThe data supporting the findings of this study are available within the paper and its supplementary information files. The RNA-sequencing, HTGTS and CRISPR-Cas9 screen data generated in this study have been deposited in NCBI’s Gene Expression Omnibus and are accessible through the GEO Series accession numbers GSE212194, GSE212195, GSE212196, and GSE214643. Source Data for the data presented in graphs are provided with this paper. The uncropped gels and western blots are provided in the Supplementary Information. All data are available from the authors upon request. Source data are provided with this paper.",False,True,True dataset,10.1016_j.devcel.2023.03.018,doi10.1016_j.devcel.2023.03.018,Data and code availability All data reported in this paper will be shared by the lead contact upon request. No large-scale datasets or original code were generated in this study. Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.,False,True,True dataset,10.1371_journal.pntd.0011283,doi10.1371_journal.pntd.0011283,Data Availability Statement All relevant data are within the manuscript and its Supporting information files.,False,True,True dataset,10.1371_journal.pone.0265395,doi10.1371_journal.pone.0265395,Data Availability Statement Data underlying this study cannot be shared publicly due to Ecuador government regulations that they are requested directly. Direct requests to the Ministry of Public Health can be made by contacting ventanillaunica.msp@msp.gob.ec and to the Ecuadorian Institute of Social Security at https://www.iess.gob.ec/contactos.,False,True,False dataset,10.3389_fams.2022.830530,doi10.3389_fams.2022.830530,"DATA AVAILABILITY STATEMENT The original contributions presented in the study are included in the article/supplementary material, further inquiries can be directed to the corresponding author/s.",False,True,False dataset,10.3390_bioengineering9010002,doi10.3390_bioengineering9010002,Data Availability Statement: The data presented in this study are available on request from the corresponding author.,False,True,False dataset,10.1186_s12859-023-05169-4,doi10.1186_s12859-023-05169-4,"Availability of data and materialsThe documentation and the source code of PSReliP are available at https://github.com/solelena/PSReliP. Detailed instructions on installing the pipeline can be found in the main README file of the PSReliP repository on GitHub. To prepare the datasets on rice varieties and Malawian cichlids used as input data for PSReliP, the raw sequence data in FASTQ format were downloaded from the European Nucleotide Archive (ENA) database by accession number, as listed in Additional file 2: Tables S4 and S5. In these tables, the ‘BioSample accession’ represents the BioSample accession numbers from the BioSample database (https://www.ncbi.nlm.nih.gov/biosample/); the ‘BioProject accession’ represents the BioProject accession numbers from BioProject (https://www.ncbi.nlm.nih.gov/bioproject/); and the ‘Run accession’ represents the SRA accession numbers from the Sequence Read Archive (SRA) based on the source database (SRA, European Bioinformatics Institute (EBI), or DNA Data Bank of Japan (DDBJ)). The SRA run accessions that were used for to create the dataset of rice varieties: DRR018360, DRR018358, DRR018356–DRR018357, DRR018359, DRR018355, DRR008446–DRR008447, DRR001185, DRR000719–DRR000720, DRR003661, DRR003656–DRR003657, DRR003660, DRR003652, DRR003655, DRR003650–DRR003651, DRR003659, DRR003653–DRR003654, DRR003648–DRR003649, DRR003658, DRR004451–DRR004453, DRR125602, DRR054198, DRR054216, DRR099981–DRR099990, DRR093954–DRR093956, DRR093959, DRR093961–DRR093970, DRR092498, DRR092500, DRR128976–DRR128981, ERR2240123–ERR2240128, ERR2241054–ERR2241058, ERR2241060, ERR2242620–ERR2242626, ERR2245512–ERR2245513, ERR2245515–ERR2245520, ERR2245522–ERR2245525, ERR2245527–ERR2245529, ERR2245533–ERR2245540, ERR2245542–ERR2245544, ERR2245546–ERR2245557, ERR157947, ERR161560, ERR161567–ERR158568, ERR161564, SRR1614244, SRR546420, SRR546695, SRR921498, SRR921505, SRR923809, SRR925387, SRR933669, SRR1016473–SRR1016474, SRR1016489–SRR1016491, SRR3056468, SRR1328207, SRR1328218, SRR1328220, SRR1328233, SRR1328254, SRR1450213–SRR1450215, SRR1450217, SRR1450219, SRR1450197–SRR1450198, SRR1528301, SRR1528330, SRR1528440, SRR1528449, SRR1712585, SRR1712645–SRR1712647, SRR1712649, SRR1712651, SRR1712653, SRR1712656, SRR1712898–SRR1712901, SRR1712903–SRR1712907, SRR1712909–SRR1712910, SRR1712953, SRR1712964–SRR1712970, SRR1712971–SRR1712981, SRR3056114, SRR3056466, SRR3056278, SRR3133641, SRR5880534, SRR6166428. The SRA run accessions that were used for to create the dataset of Malawi cichlids: ERR266450–ERR266461, ERR266464–ERR266485, ERR266488–ERR266493, ERR266496–ERR266498, ERR266502, ERR266505, ERR266508–ERR266509, ERR266511, ERR266513, ERR271651, ERR271655, ERR271658–ERR271659, ERR271663, ERR271666, ERR271669, ERR271670, ERR271672, ERR271674, ERR271677–ERR271678, ERR271680, ERR271682, ERR295124–ERR295132, ERR299198–ERR299215, ERR303339–ERR303340, ERR303342–ERR303343, ERR303345–ERR303346, ERR303348–ERR303349, ERR303351–ERR303352, ERR303354–ERR303355, ERR303357–ERR303358, ERR303360–ERR303361, ERR303363–ERR303364, ERR303366–ERR303367, ERR303369–ERR303370, ERR303372–ERR303373, ERR303375–ERR303376, ERR303378–ERR303379, ERR303381–ERR303382, ERR303384–ERR303385, ERR303387–ERR303388, ERR303390–ERR303391, ERR303393–ERR303394, ERR303396–ERR303397, ERR303399–ERR303400, ERR303402–ERR303403, ERR303405–ERR303406, ERR303408–ERR303409, ERR315227–ERR315228, ERR315230–ERR315231, ERR315233–ERR315234, ERR702304–ERR702307, ERR715499–ERR715501, ERR702308, ERR715502–ERR715504, ERR715506–ERR715513, ERR702309, ERR715476, ERR715514–ERR715515, ERR715477, ERR715516–ERR715519, ERR715521, ERR715523–ERR715524, ERR715478–ERR715487, ERR715530–ERR715540, ERR1081365–ERR1081371, ERR1081373–ERR1081376, ERR1081378–ERR1081388, ERR1081372, ERR3634107–ERR3634110, ERR3634112–ERR3634115.",False,True,True dataset,10.1186_s12954-023-00771-4,doi10.1186_s12954-023-00771-4,Availability of data and materials All data used during the study are available on reasonable request from the corresponding author.,False,True,False dataset,10.1038_s41586-023-05836-9,doi10.1038_s41586-023-05836-9,"Data availability Structure factors and refined models obtained using X-ray crystallography have been deposited into PDB under accession codes 8DBA (wild-type KaiCRS) and 8DB3 (KaiCRS-∆coil). Cryo-EM maps and refined models have been deposited into the Electron Microscopy Data Bank (EMDB) and PDB, respectively. The composite map and model for the KaiCRS-S413E/S414E dodecamer reconstruction are submitted under entries EMD-29505 and 8FWI, respectively. The composite map and model for the KaiCRS-S413E/S414E–KaiBRS dodecamer reconstruction are submitted under entries EMD-29506 and 8FWJ, respectively. The focused KaiCRS-S413E/S414E hexamer refinement map is available under accession EMD-29507 and the focused KaiCRS-S413E/S414E–KaiBRS hexamer refinement map is available under accession EMD-29508. The full KaiCRS-S413E/S414E dodecamer refinement is available under accession EMD-29509 and the full KaiCRS-S413E/S414E–KaiBRS dodecamer refinement is available under accession EMD-29510. Other datasets used are all publicly available in public community or discipline-specific repositories (for example, PDB identifiers 5JWQ, 1W0J, 1TF7 and 7S65). The accession codes for protein sequences, sequence alignments and phylogeny are listed in Supplementary Datasets 1 and 2.",False,True,True dataset,10.1016/j.celrep.2022,doi10.1016/j.celrep.2022,Data and code availability d The data for this study is available upon request from the lead contact. d All original code has been deposited at Zenodo (https://zenodo.org/record/7055600) and is publicly available as of the date of publication. DOIs are listed in the key resources table. d Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.,False,True,True dataset,10.1088_1402-4896_ad1024,doi10.1088_1402-4896_ad1024,Data availability statementOur university's policy is to share data only upon request to avoid plagiarism and the misuse of data. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pone.0284036,doi10.1371_journal.pone.0284036,"Data Availability Statement Unfortunately, due to the General Data Protection Regulation (GDPR) of EU and the connected Dutch data protection legislation we are not allowed to share individual patient data even in a pseudonymized format (data contact: University Medical Center Utrecht, WAG/mb/20/016983, mvianen@umcutrecht.nl).",False,True,False dataset,10.1371_journal.pcbi.1007568,doi10.1371_journal.pcbi.1007568,Data Availability Statement All relevant files are available from https://github.com/look0012/GCNCDA/.,False,True,True dataset,10.1186_s12931-023-02455-w,doi10.1186_s12931-023-02455-w,Data availability All data generated and analysed during this study are included in this published article.,False,True,False dataset,10.1186_s13059-023-02939-4,doi10.1186_s13059-023-02939-4,"Availability of data and materials Data supporting the findings of this work are available within the paper and its Supplementary Information files. All high-throughput sequencing data generated in this study are accessible at NCBI’s Gene Expression Omnibus (GEO) via GEO Series accession number GSE212801 [42]. The customized codes used in this study are available Github [43], Figshare [44], and is released under the terms of the GNU General Public License (GPL) version 3.0 (https://opensource.org/license/gpl-3-0/). ChIP-seq data from the following studies and accession numbers were used: Liu et al. [26] (GSM2667837 [45]), Liu et al. [46] (GSM4275144 [47], GSM4275146 [48]), Zhu et al. [49] (SRR1509479 [50]), Harris et al. [51] (GSM2897853 [52]), Jégu et al. [53] (GSM2366606 [54]), Chen et al. [55] (GSM2882803 [56]), Lu et al. [57] (GSM3674621 [58]), and Zhong et al. [59] (GSM5684049 [60], GSM5684053 [61], GSM5684057 [62]).",False,True,True dataset,10.1371_journal.pstr.0000102,doi10.1371_journal.pstr.0000102,Data Availability Statement: The data in this manuscript are available on the Figshare data repository. https://doi.org/10.6084/m9.figshare.24808338.v1.,False,True,True dataset,10.7554_elife.83529,doi10.7554_elife.83529,"Data availability All materials are available through requests to the corresponding authors. All custom code was identical to that reported in Pederick et al., 2021 and can be accessed at https://github.com/dpederick/Reciprocal-repulsions-instruct-the-precise-assembly-of-parallel-hippocampal-networks/tree/1 (Pederick, 2021). All data generated or analyzed during this study are included in the manuscript and supporting file. Source data files have been provided for all figures.",False,True,True dataset,10.2196_44990,doi10.2196_44990,Data Availability Twitter data were collected using Twitter’s Application Programming Interface for Academic Research. More information on applying for access can be found at [72]. The paper also uses restricted US natality files with geographic identifiers. The files were obtained after submitting a research proposal to and obtaining approval for data access from the National Center for Health Statistics. More information on applying can be found at [73]. We have added example code to run the analyses in Multimedia Appendix 1.,False,True,True dataset,10.1038_s41467-023-40476-7,doi10.1038_s41467-023-40476-7,Data availabilityHigh-throughput sequencing data have been deposited in the NCBI Sequence Read Archive database under accession code SUB13659056 and Bioproject PRJNA994108. All data supporting the findings described in this manuscript are available in the article and in the Supplementary Information and from the corresponding author upon request. Source data are provided with this paper.,False,True,True dataset,10.3847_1538-4357_ac721b,doi10.3847_1538-4357_ac721b,"Software: astropy (Astropy Collaboration et al. 2013), deeplenstronomy (Morgan et al. 2021), lenstronomy (Birrer & Amara 2018; Birrer et al. 2021), matplotlib (Hunter 2007), numpy (Harris et al. 2020), pandas (McKinney 2010), PlotNeuralNet (Iqbal 2018), PyTorch (Paszke et al. 2019), Scikit-Learn (Pedregosa et al. 2011), scipy (Virtanen et al. 2020).",True,False,True dataset,10.1371_journal.pdig.0000081,doi10.1371_journal.pdig.0000081,"Data Availability Statement Relevant data set is provided in the manuscript and in the supplementary. Further data cannot be shared publicly as they contain potentially identifying patient information. The data are owned by Poriya hospital. For researchers who meet the criteria for access to confidential data, requests for these data sets can be sent to zohar@odmachine.com. The authors had no special access privileges that others would not have.",False,True,True dataset,10.1371_journal.pone.0285717,doi10.1371_journal.pone.0285717,"Data Availability Statement The datasets generated during and/or analysed during the current study are not publicly available due to constraints imposed by the consent form and the IRB committee. However, a request to access the data can be requested from the research ethics committee at JUH hospital (sssaleh@ju.edu.jo).",False,True,False dataset,10.2196_43965,doi10.2196_43965,"Data Availability The data sets generated and analyzed during this study are available from the corresponding author on reasonable request. Interested parties will be required to complete an institutional Data Use Agreement, and data will be made available via Secure Data transfer.",False,True,True dataset,10.1371_journal.pone.0266065,doi10.1371_journal.pone.0266065,Data Availability Statement All relevant data is available within the paper.,False,True,False dataset,10.1021_acscentsci.3c00160,doi10.1021_acscentsci.3c00160,"Data Availability Statement The authors declare that the data supporting the findings of this study are available within the paper and its Supporting Information files, and at Mendeley Data, V1, doi: 10.17632/dn37cj6z5m.1, as well as from the corresponding author upon reasonable request.",True,True,False dataset,10.1371_journal.pone.0283908,doi10.1371_journal.pone.0283908,"Data Availability Statement All relevant data are within the paper and are shown in the Supporting Information, S6 Fig.",False,True,False dataset,10.1088_1361-6463_acffd7,doi10.1088_1361-6463_acffd7,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pone.0254520,doi10.1371_journal.pone.0254520,Data Availability Statement All relevant data are within the manuscript and its S1 Appendix files.,False,True,True dataset,10.1186_s40168-023-01493-2,doi10.1186_s40168-023-01493-2,"Availability of data and materials The datasets supporting the conclusions of this article are available in the National Center for Biotechnology Information repository, under BioProject number PRJNA763533. The previously published, free-living raw sequencing reads and corresponding MAGs are available at the National Center for Biotechnology Information under BioProject PRJNA454888.",True,True,False dataset,10.1073_pnas.2220159120,doi10.1073_pnas.2220159120,"Data, Materials, and Software Availability. ATAC sequencing data have been submitted to the NCBI Sequence Read Archive, accession number: BioProject PRJNA887449. All study data are included in the article and/or SI Appendix.",True,True,True dataset,10.1186_s13073-023-01173-8,doi10.1186_s13073-023-01173-8,Availability of data and materials Data supporting the findings of this study are available within the manuscript and supplemental files. The whole-genome sequencing data of anonymized patients recruited through the National Institutes of Health (NIH) and sequenced at the National Institute of Allergy and Infectious Diseases (NIAID) through the Uniformed Services University of the Health Sciences (USUHS)/the American Genome Center (TAGC) are available under dbGaP submission phs002245.v1. Other patients were not consented to share the raw WES/WGS data files beyond the research and clinical teams.,False,True,True dataset,10.1038_s41593-023-01345-0,doi10.1038_s41593-023-01345-0,Data availability All source data are provided with this paper. Raw electrophysiology and imaging datasets are available from the corresponding authors upon reasonable request. Plasmids for our newly generated viral constructs have been deposited at https://www.addgene.org/plasmids/articles/28225278/. Source data are provided with this paper.,False,True,False dataset,10.1371_journal.pgen.1010655,doi10.1371_journal.pgen.1010655,"Data Availability Mutant lines were deposited in the National Small Grains Collection under ID numbers PI 701905 (Kronos-PS, introgression of photoperiod sensitive allele Ppd-A1b), PI 701906 (Kronos elf3 phyB combined knock-outs), and PI 701907 (Kronos elf3 ppd1). Additional information about these accessions and/or seed requests can be done at GRIN-Global https://npgsweb.ars-grin.gov/gringlobal/search. All other relevant data are within the paper and its Supporting Information files.",False,True,False dataset,10.1186_s40359-021-00605-7,doi10.1186_s40359-021-00605-7,Availability of data and materialsAll data generated or analysed during this study are included in this published article.,False,True,False dataset,10.1172_jci.insight.166698,doi10.1172_jci.insight.166698,Data availability.RNA-Seq data can be accessed in the NCBI GEO via GSE197571 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197571).,False,True,False dataset,10.1099_mgen.0.000977,doi10.1099_mgen.0.000977,"All sequence data are available online. The assembled sequencing reads generated in the present study are publicly available at the National Center for Biotechnology Information (NCBI), BioProject Number: PRJNA851747 and PRJNA659865. The authors confirm that all supporting data, code and protocols have been provided within the article or through supplementary data files. All new multilocus sequence typing (MLST) sequences generated were deposited onto the respective databases available on PubMLST (https://pubmlst.org/organisms/Acinetobacter-baumannii). Additional A. baumannii genomes used in this study are available and can be downloaded from GenBank (accession numbers available in File S2).",False,True,True dataset,10.1016_j.pocean.2023.102995,doi10.1016_j.pocean.2023.102995,"Data availability Data has been made available on GitHub: https://github.com/Kenhasteandersen/FirstPrinciplesPlankton. Research data for this article Dryad Dryad Digital Repository Scientific and medical research data Data associated with the article: Body size, light intensity and nutrient supply determine plankton stoichiometry in mixotrophic plankton food webs",False,True,True dataset,10.1371_journal.pone.0285449,doi10.1371_journal.pone.0285449,"Data AvailabilityThe aligned sequences are available through the European Nucleotide Archive under accession number PRJEB61755. Otherwise, all data generated or analyzed during this study are included in this published article and its Supporting Information files.",False,True,False dataset,10.1371_journal.pntd.0007125,doi10.1371_journal.pntd.0007125,"Data Availability Statement It is a systematic review, all the included papers are published online and can be found in the references of the paper.",False,True,False dataset,10.1371_journal.pbio.3002483,doi10.1371_journal.pbio.3002483,Data Availability Statement: All datasets are publicly available: Figs 1–8: dx.doi.org/10.5281/zenodo.10386854. S1–S4 Figs: dx.doi.org/10.5281/zenodo.10387118. R code for graphical outputs and statistical analyses of Figs 1–4: dx.doi.org/10.5281/zenodo.10386496. Modelling code and R code to recreate all modelling figures dx.doi.org/10.5281/zenodo.10162264.,True,True,True dataset,10.1515_anona-2022-0288,doi10.1515_anona-2022-0288,Data availability statement: The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1038_s42003-023-04898-9,doi10.1038_s42003-023-04898-9,"Data availability RNA sequencing data that support the findings of this study have been deposited in GEO with the accession code GSE216060. Data can be downloaded by going to ncbi.nlm.nih.gov/geo and searching for the accession code. The source data for the main figures are given in Supplementary Data 1 and 2, and any remaining information can be obtained from the corresponding author upon reasonable request.",False,True,True dataset,10.1371_journal.pgph.0002529,doi10.1371_journal.pgph.0002529,Data Availability Statement: All datasets underlying this study are freely available at the public repository https://osf.io/7ysb9/.,False,True,False dataset,10.7554_elife.85145,doi10.7554_elife.85145,"Data availability The current manuscript is a computational study, so no data have been generated for this manuscript. Code is available on GitHub (copy archived at Russell et al., 2022a). Numerical data used to generate figures is available as source data for Figures 3, 4, 5, 6, and 7. The following previously published datasets were used: EmersonRODeWittWSVignaliMGravleyJOsborneEJDesmaraisCKlingerMCarlsonCSHansenJARiederMRobinsHSHuJK2017Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA mediated effects on the T cell repertoireImmuneACCESS10.21417/B7001Z RussellMLSouquetteALevineDMAllenEKKuanGSimonNBalmasedaAGordonAThomasPGMatsenFABradleyP2022Combining genotypes and T cell receptor distributions to infer genetic loci determining V(D)J recombination probabilitiesNCBI BioProjectPRJNA762269 RobinsHPearsonO2015Normal Human PBMC Deep Sequencing TCRB versus TCRG comparisonImmuneACCESSTCRB-TCRG-comparison BrineyBInderbitzinAJoyceCBurtonDR2019Commonality despite exceptional diversity in the baseline human antibody repertoireNCBI BioProjectPRJNA406949 JaffeDBShahiPAdamsBAChrismanAMFinneganPMRamanNRoyallAETsaiFVollbrechtTReyesDSMcDonnellWJ2022Functional antibodies exhibit light chain coherenceFigshare10.25452/figshare.plus.20338177 MartinPJLevineDMStorerBENelsonSCDongXHansenJA2020Recipient and donor genetic variants associated with mortality after allogeneic hematopoietic cell transplantationNCBI dbGaPphs001918",False,True,True dataset,10.1073_pnas.2221652120,doi10.1073_pnas.2221652120,"Data, Materials, and Software Availability All study data are included in the article and/or SI Appendix.",True,True,True dataset,10.1186_s12891-023-06370-5,doi10.1186_s12891-023-06370-5,Availability of data and materials The data used in the present study are publicly available through the Inter-University Consortium for Political and Social Research (ICPSR): www.icpsr.umich.edu/web/ICPSR/studies/29282.,False,True,False dataset,10.1371_journal.pmed.1004257,doi10.1371_journal.pmed.1004257,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1088_2515-7620_ad028c,doi10.1088_2515-7620_ad028c,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s41467-023-39248-0,doi10.1038_s41467-023-39248-0,"Data availabilityControl genomic data can be requested from the Scottish Family Health Study (Generations Scotland) by email to access@generationscotland.org. Details of the application procedure can be found at https://www.ed.ac.uk/generation-scotland/for-researchers/access. Patient data can be requested from ian.tomlinson@oncology.ox.ac.uk, with response expected within four weeks. All data are protected by formal agreements in order to preserve patient anonymity and privacy, and to comply with ethical permissions. Data will be released to researchers subject to formal compliance with these conditions of anonymity and existing ethical permissions, as incorporated into a data transfer agreement based on the standard models used by the host institutions concerned.",False,True,False dataset,10.1371_journal.pone.0252732,doi10.1371_journal.pone.0252732,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1038_s41586-023-05754-w,doi10.1038_s41586-023-05754-w,"Data availability Bam files of aligned reads for the 80 newly published ancient individuals can be obtained from the European Nucleotide Archive (accession no. PRJEB58698). SNP array genotype data for 122 newly reported modern individuals can be obtained from a permanent link at the Dataverse repository at (10.7910/DVN/NC28XW). The data for 103 of these individuals can be downloaded without registering, whereas the informed consent for 19 individuals from Madagascar is not consistent with unmediated public posting of data, and may be downloaded after filling out a form with an email address and institutional or professional affiliation, and including an affirmation of the following statements: (a) I will not distribute the data outside my collaboration; (b) I will not post the data publicly; (c) I will make no attempt to connect the genetic data to personal identifiers for the samples; (d) I will use the data only for studies of population history; and (e) I will not use the data for commercial purposes.",False,True,False dataset,10.1371_journal.pone.0226644,doi10.1371_journal.pone.0226644,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1088_2053-1591_ad135b,doi10.1088_2053-1591_ad135b,Data availability statementThere is no data related to this manuscript that needs to be shared with the public. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,True dataset,10.1038_s41467-023-39038-8,doi10.1038_s41467-023-39038-8,"Data availabilityRNA-seq datasets analyzed in this study were previously published and are publicly available, and they were obtained from the GEO repository using accession numbers GSE116124, GSE152768, GSE120306. This study also accessed the following databases: Ensembl release 100 (https://www.ensembl.org/info/website/archives/index.html?redirect=no), the Human Transcription Factors database (http://humantfs.ccbr.utoronto.ca/), the HumanTFDB portal (http://bioinfo.life.hust.edu.cn/AnimalTFDB/), the TF2DNA database (https://www.fiserlab.org/tf2dna_db/), QuickGO (https://www.ebi.ac.uk/QuickGO/), GSEA (https://www.gsea-msigdb.org/gsea/index.jsp), Biocarta (https://maayanlab.cloud/Harmonizome/dataset/Biocarta+Pathways), KEGG (https://www.genome.jp/kegg/). Source data are provided with this paper.Code availabilityCustom code generated to analyze the RNA-seq data is available at: https://github.com/ArnaudDroitLab/de_rus_jacquet_2023.",False,True,True dataset,10.1515_culture-2022-0170,doi10.1515_culture-2022-0170,Data availability statement: All data generated or analysed during this study are included in this published article.,False,True,False dataset,10.1371_journal.pone.0212259,doi10.1371_journal.pone.0212259,"Data Availability Statement According to Danish legislation, the authors' own approvals to use the Danish data sources for the current study do not allow them to distribute or make patient data directly available to other parties. Up-to-date information on data access is available online (http://sundhedsdatastyrelsen.dk/da/forskerservice). Access to data from the Danish Health Data Authority requires approval from the Danish Data Protection Agency (https://www.datatilsynet.dk/english/the-danish-data-protection-agency/introduction-to-the-danish-data-protection-agency/). The authors do not have special access privileges to these data.",True,True,False dataset,10.1126_science.adh1720,doi10.1126_science.adh1720,"Data and materials availability: Diffraction images have been deposited at the SBGrid databank. Protein structures and reflection files for LL1 and LL2 complex structures have been deposited at the RCSB Protein Databank with PDB IDs 8DA3, 8DA4, 8DA5, 8DA6, 8DA7, 8DA8, 8DA9, 8DAA, 8DAB, and 8DAC. NGS data is deposited at DRYAD (46). Data and code for MI, coevolution analysis, and deep learning model are available at https://github.com/akds/CoevolveML and archived at Zenodo (47).",True,True,True dataset,10.1155_2019_6891831,doi10.1155_2019_6891831,"Data Availability The data used to support the findings of this study have not been made available because they are restricted by the The Health Care Service Human Research Ethics Committee (Helsinki approval No. 2009087), as well as the Israeli Ministry of Education (No. 506/7902) in order to protect patient privacy. Data are available from Dr. Tsofia Deutsch-Castel, deutsh_t@mac.org.il for researchers who meet the criteria for access to confidential data.",False,True,False dataset,10.1073_pnas.2221613120,doi10.1073_pnas.2221613120,"Data, Materials, and Software Availability All study data are included in the article and/or SI Appendix.",True,True,True dataset,10.1186_s12889-019-7608-1,doi10.1186_s12889-019-7608-1,Availability of data and materialsThe datasets generated and/or analysed during the current study are not publicly available due [reasons below] but are available from the corresponding author on reasonable request.,False,True,False dataset,10.1084_jem.20230661,doi10.1084_jem.20230661,Data availabilityAll data supporting the findings of this study are available within the main text and supplemental material and from the corresponding authors upon request.,True,True,False dataset,10.1007_s40993-022-00409-7,doi10.1007_s40993-022-00409-7,Data availability Data sharing not applicable to this article as no datasets were generated or analysed during the current study.,False,True,False dataset,10,doi10,Data Availability Statement: Data is contained within the article or Supplementary Material. The data presented in this study are available in this article and related Supplementary Material.,False,True,False dataset,10.1371_journal.pone.0242533,doi10.1371_journal.pone.0242533,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0292082,doi10.1371_journal.pone.0292082,"Data Availability Statement: The dataset, code and models are publicly available at https://github.com/donghaibing2005001481/YOLOv5s.",False,True,True dataset,10.1371_journal.pone.0239694,doi10.1371_journal.pone.0239694,Data Availability Statement All of the data used in this research is publically available at http://ClinicalTrials.gov. All of the reports generated from this research can be found at http://CovidResearchTrials.com.,False,True,False dataset,10.1371_journal.pntd.0011975,doi10.1371_journal.pntd.0011975,Data Availability Statement: All relevant data are within the paper and its Supporting Information files. The study protocol is available at: http://dx.doi.org/10.1136/bmjopen-2017-021372.,False,True,False dataset,10.1126_science.abn5887,doi10.1126_science.abn5887,Data and materials availability: Raw sequencing reads for Balto and Alaskan sled dogs have been deposited to the NCBI Sequence Read Archive under BioProject accession PRJNA786530.,True,True,False dataset,10.1371_journal.pone.0243709,doi10.1371_journal.pone.0243709,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0262786,doi10.1371_journal.pone.0262786,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1242_dev.201186,doi10.1242_dev.201186,All relevant data can be found within the article and its supplementary information.,False,True,False dataset,10.3390_math10030452,doi10.3390_math10030452,Data Availability Statement: Not applicable.,False,True,False dataset,10.1371_journal.pone.0251372,doi10.1371_journal.pone.0251372,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.7554/eLife,doi10.7554/eLife,"Data availability Due to the size of the dataset, raw electrophysiology traces are available on request to the corresponding author. All information has been extracted from the raw electrophysiological traces and is available to download as source data files. All the codes or software used in analyzing the data and their sources are listed in the Key Resources Table.",False,True,True dataset,10.1186_s12885-021-08130-x,doi10.1186_s12885-021-08130-x,Availability of data and materialsThe datasets generated during the current study are not publicly available due to concerns regarding patient confidentiality and proprietary information but are available upon reasonable request from the corresponding author.,False,True,False dataset,10.1371_journal.pgen.1010809,doi10.1371_journal.pgen.1010809,"Data AvailabilityThe authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting Information files. Data points used to make plots, raw RNA-sequencing data, and unprocessed gels and blots used in this study are available as Data S1, S2, and S3, respectively.",False,True,True dataset,10.1007_s00220-023-04656-2,doi10.1007_s00220-023-04656-2,Data Availability Statement Data sharing not applicable to this article as no datasets were generated or analysed during the current study.,False,True,False dataset,10.1088_1741-2552_acfe3a,doi10.1088_1741-2552_acfe3a,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://github.com/hasanzan/FullSleepNet.,False,True,True dataset,10.1371_journal.pone.0237585,doi10.1371_journal.pone.0237585,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1021_acs.inorgchem.2c03737,doi10.1021_acs.inorgchem.2c03737,Data Availability Statement CCDC deposition numbers 2195856−2195858 contain the supplementary crystallographic data for this paper.,False,True,False dataset,10.1088_2752-5295_acf4b6,doi10.1088_2752-5295_acf4b6,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://climexp.knmi.nl/HeatwaveIndiaPakistan2022.cgi.,False,True,False dataset,10.7554_elife.85413,doi10.7554_elife.85413,"GEO GSE214714 is the accession number for the ChIP-seq data reported in this manuscript. The following dataset was generated: Author(s) Year Dataset title Dataset URL Database and Identifier Yang Q, Lo T, Brejc K, Schartner CM, Ralston EJ, Lapidus DM, Meyer BJ 2022 Caenorhabditis briggsae SDC-2 and DPY-27 ChIP- seq https://www.ncbi. nlm.nih.gov/geo/ query/acc.cgi?acc= GSE214714 NCBI Gene Expression Omnibus, GSE214714",False,True,False dataset,10.1016_j.cub.2019.01.077,doi10.1016_j.cub.2019.01.077,Data and Software Availability Code will be made available at https://github.com/bicanski,False,True,True dataset,10.1371_journal.pone.0265361,doi10.1371_journal.pone.0265361,Data Availability Statement Data deposited in the Dryad Digital Repository: https://doi.org/10.5061/dryad.jdfn2z3d0.,False,True,False dataset,10.1371_journal.pgph.0001991,doi10.1371_journal.pgph.0001991,Data Availability Statement All data underlying the study findings have been uploaded as supporting information.,False,True,False dataset,10.1038_s41588-023-01366-2,doi10.1038_s41588-023-01366-2,"Data availability The raw sequencing files generated during this study are available on the Gene Expression Omnibus (accession number GSE205904); corresponding processed data are available on Zenodo70. TF-binding motifs were obtained from HOCOMOCO v11 (https://hocomoco11.autosome.org/). Gene Ontology assignments were obtained from AmiGO (http://amigo.geneontology.org/amigo). All analyses were carried out on human genome version hg38, except for PRS endophenotype GWAS (hg19). The raw source data for the facial phenotypes—the three-dimensional facial surface models in.obj format—are available through the FaceBase Consortium (https://www.facebase.org). Access to these three-dimensional facial surface models requires proper institutional ethics approval and approval from the FaceBase data access committee. Facial scans from patients with PRS (used to define the PRS endophenotype) are available through the FaceBase Consortium (https://www.facebase.org FB00000861) under controlled access. The participants making up the US dataset of healthy individuals used for PRS endophenotype GWAS were not collected with broad data sharing consent. Given the highly identifiable nature of both facial and genomic information and unresolved issues regarding risks to participants of inherent reidentification, participants were not consented for inclusion in public repositories or the posting of individual data. This restriction is not because of any personal or commercial interests. Further information about access to the raw three-dimensional facial images and/or genomic data can be obtained from the PSU IRB (IRB-ORP@psu.edu, and the IUPUI IRB (irb@iu.edu). The ALSPAC (UK) data will be made available to bona fide researchers on application to the ALSPAC Executive Committee (https://www.bristol.ac.uk/alspac/researchers/access/). Summary statistics from the PRS endophenotype GWAS are available on the GWAS Catalog (GCP000517). Plasmids generated in this study have been deposited in Addgene (plasmid no. 194971). All other reagents are available upon request to J.W. Source data are provided with this paper.",False,True,True dataset,10.1371_journal.pone.0258709,doi10.1371_journal.pone.0258709,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.3390_vision7010010,doi10.3390_vision7010010,Data Availability Statement: Not applicable.,False,True,False dataset,10.1371_journal.pone.0285953,doi10.1371_journal.pone.0285953,"Data Availability Statement The informed consent forms for this study indicated that participants' data would be shared only in aggregate, so we are unable to share an individual-level dataset. The aggregated data are available in the manuscript tables and figures. If researchers are interested in obtaining the data in this manuscript aggregated in a different way, they can reach out to MVPDB inquiries (mvpdb@cdc.gov) to discuss potential data access. A data use agreement may be required.",False,True,True dataset,10.1016_j.puhe.2020.04.029,doi10.1016_j.puhe.2020.04.029,Availability of data and materialsUnderstanding Society - The UK Household Longitudinal Study (UKHLS) data are available from the UK Data Service https://discover.ukdataservice.ac.uk/catalogue/?sn = 6614. Data documentation is available from the Understanding Society website https://www.understandingsociety.ac.uk/documentation.,False,True,False dataset,10.1371_journal.pone.0208971,doi10.1371_journal.pone.0208971,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1084_jem.20221816,doi10.1084_jem.20221816,"Data availability scRNAseq data of intestinal CD4+ T cells from GF or Oligo-MM12 mice fed AA, AA + OVA, or chow diet, and SPF iSellTomato mice in the OVA feeding, tolerance, or allergy protocols are publicly available under Gene Expression Omnibus accession number GSE231351. Other data are available in the published article and online supplemental material.",False,True,False dataset,10.1126_sciadv.aat9488,doi10.1126_sciadv.aat9488,Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. Additional data related to this paper may be requested from the authors.,True,True,False dataset,10.1186_s12943-023-01788-w,doi10.1186_s12943-023-01788-w,Availability of data and materials The datasets generated and/or analysed during the current study are available through the referenced publications or at GEO website as described in the Methods section.,False,True,False dataset,10.1038_s41398-020-00953-9,doi10.1038_s41398-020-00953-9,Data availability Summary statistics are available at https://bitbucket.org/steinlabunc/ spark_asd_sumstats. Code availability Code is available at https://github.com/thewonlab/GWAS_ASD_SPARK.,False,True,True dataset,10.1371_journal.pone.0299456,doi10.1371_journal.pone.0299456,Data Availability Statement: The code supporting this study is available from https://zenodo.org/records/10542753.,False,True,True dataset,10.1101_gad.343038.120,doi10.1101_gad.343038.120,"Data and software availability Publicly available, published data sets can be accessed on the fol- lowing GEO accession numbers: single-cell RNA-seq data sets GSE133747 and GSE128033 and published bulk RNA-seq of tis- sue-resident macrophage populations GSE63340. Sequencing data sets performed in this study are available at the NCBI GEO under accession number GSE151015.",False,True,True dataset,10.1088_1361-6560_ad07f5,doi10.1088_1361-6560_ad07f5,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary information files).,False,True,False dataset,10.1186_s12866-023-02910-0,doi10.1186_s12866-023-02910-0,Availability of data and materialsAll data and materials are available for this work and can be accessed from the corresponding author.,True,True,False dataset,10.1088_1402-4896_ad1088,doi10.1088_1402-4896_ad1088,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pone.0239135,doi10.1371_journal.pone.0239135,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pgen.1008593,doi10.1371_journal.pgen.1008593,"Data Availability Statement EPSPS sequencing data (MK421977-MK422097), NextRAD sequencing data Genbank: PRJNA515629) genome assembly (Genbank: VALG00000000) and Exome resequencing data (Genbank: PRJNA515629) are available in GenBank.",False,True,False dataset,10.1371_journal.pclm.0000243,doi10.1371_journal.pclm.0000243,Data Availability Statement: Survey data available via the Open Science Framework repository. The relevant DOI is: DOI 10.17605/OSF.IO/7QR8C.,False,True,False dataset,10.1073_pnas.2220537120,doi10.1073_pnas.2220537120,"Data, Materials, and Software AvailabilityGitHub hosts the FPalyze (60) and SMBalyze (61) R packages. The custom scripts referenced in these methods are available on GitHub (62). For the SM experiments, raw movie files and SMBalyze output files have been uploaded to Zenodo (63), with an embargo that expires in October 2023. Our pMALcPP vector and pMALcPP/MS2-CP plasmids will be deposited to Addgene. All study data are included in the article and/or SI Appendix.",True,True,True dataset,10.1371_journal.pone.0284692,doi10.1371_journal.pone.0284692,Data Availability Statement The third party financial data files are available from the China Economic and Financial Research Database (CSMAR) (https://www.gtarsc.com) and Wind database (https://www.wind.com.cn). The authors confirm that others would be able to access or request these data in the same manner as the authors. The authors also confirm that they did not have any special access or request privileges that others would not have.,True,True,False dataset,10.1371_journal.ppat.1012064,doi10.1371_journal.ppat.1012064,Data Availability Statement: The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1038_s41598-023-34648-0,doi10.1038_s41598-023-34648-0,Data availabilityAll data and materials have been made publicly available at the National Center for Health Statistics website (https://www.cdc.gov/nchs/nhanes/index.htm).,True,True,False dataset,10.1016_j.chom.2023.05.025,doi10.1016_j.chom.2023.05.025,Data and code availabilityAll data are available via links in the Method details section and key resources table. See https://github.com/dms-vep/HIV_Envelope_BF520_DMS_CD4bs_sera for results files. The raw sequencing data for this study can be found in the NCBI Sequence Read Archive under BioProject number PRJNA947170.All code are at https://github.com/dms-vep/HIV_Envelope_BF520_DMS_CD4bs_sera and via the links in the key resources table.,False,True,True dataset,10.1038_s43247-022-00597-1,doi10.1038_s43247-022-00597-1,Data availability The data for Fig. 1 is available via figshare (https://doi.org/10.6084/m9.figshare. 21183709) and data associated with Fig. 3 is available from BCO-DMO (https://www. bco-dmo.org/dataset/740051).,False,True,False dataset,10.1371_journal.pone.0270038,doi10.1371_journal.pone.0270038,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1371_journal.pone.0240987,doi10.1371_journal.pone.0240987,"Data Availability Statement Readers can access the dataset by registering an account with the Korean CDC website (https://knhanes.cdc.go.kr/knhanes/index.do). There is a blue bar on the top of the website. Click the third menu, written in Korean, “원시자료” (The content about the raw data) on the blue bar. There is a second submenu below the blue bar, written in Korean “원시자료 다운로드 (Download the raw data)”. Once readers click this, an e-mail address for log-in is required. Once logged in, readers can download the raw data from 1998-2016 Korea National Health and Nutrition Examination Survey database using SAS or SPSS. The authors do not have any special access privileges to the data. For other data related inquiries, please contact the corresponding author.",False,True,True dataset,10.7554/elife,doi10.7554/elife,Data availability All data generated or analysed during this study are included in the manuscript and supporting files. Source data files have been provided in Source Data 1.,False,True,True dataset,10.1371_journal.pone.0285211,doi10.1371_journal.pone.0285211,Data Availability Statement All of the source code of this paper is publicly available at https://github.com/Vang-z/HGJO.,False,True,True dataset,10.1186_s12870-023-04281-0,doi10.1186_s12870-023-04281-0,"Availability of data and materials The datasets generated and/or analyzed during the current study are available in the NCBI repository as PRJNA878550 (www.ncbi.nlm.nih.gov/sra/?term=PRJNA878550, frozen root ATAC-seq) and PRJNA878551 (www.ncbi.nlm.nih.gov/sra/?term=PRJNA878551, fresh root ATAC-seq). The INTACT vectors and lines generated during the current study will be available from ADDGENE and from the corresponding author on request. Both the root and leaf ATAC-Seq data can be accessed through the GrainGenes Genome Browsers by selecting the CS reference genome RefSeq v1.0 (https://wheat.pw.usda.gov/GG3/genome_browser).",False,True,True dataset,10.1073_pnas.2302191120,doi10.1073_pnas.2302191120,"Data, Materials, and Software Availability All study data are included in the article and/or SI Appendix.",True,True,True dataset,10.1038_s41422-023-00802-6,doi10.1038_s41422-023-00802-6,"Data availabilityThe scRNA-seq and spatial transcriptome data reported in this paper have been deposited in the OMIX, China National Center for Bioinformation/Beijing Institute of Genomics, Chinese Academy of Sciences (https://ngdc.cncb.ac.cn/omix: accession number OMIX003147). The raw data reported in this study can be requested from the corresponding author (chen_jiekai@gibh.ac.cn).",True,True,False dataset,10.1002_hbm.25102,doi10.1002_hbm.25102,DATA AVAILABILITY STATEMENTThe data that support the findings of this study are available from the corresponding author upon reasonable request.,False,True,False dataset,10.1371_journal.pone.0284383,doi10.1371_journal.pone.0284383,Data Availability Statement All relevant data are within the manuscript and its Supporting information files.,False,True,True dataset,10.1111_pbi.13168,doi10.1111_pbi.13168,Data availability The target deep sequencing and WGS data have been submitted to the NCBI Sequence Read Archive (SRA) BioProject ID: PRJNA380842.,False,True,False dataset,10.1371_journal.ppat.1009441,doi10.1371_journal.ppat.1009441,Data Availability Statement: Raw RNAseq data have been deposited at the National Center for Biotechnology Information (NCBI) Sequence Read Archive as Bioproject number PRJNA593260. All other data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1101_gr.277334.122,doi10.1101_gr.277334.122,"Data access All raw and processed sequencing data generated in this study have been submitted to the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/) under accession number PRJEB54100. The DeepVariant callsets for selected samples (HG02486, HG02572, HG02622, HG02886, HG03516, HG03540, HG03579) and FASTA sequences from selected low-complexity regions (n = 27) are available at Zenodo (https://doi.org/10.5281/zenodo.7392259) or at the IGSR FTP site (http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/HGSVC2/working/publications/202212_Porubsky_GenomeResearch). All custom scripts are available in the Supplemental Code and at Zenodo (https://doi.org/10.5281/zenodo.7392259).",False,True,True dataset,10.1088_2515-7620_acf02d,doi10.1088_2515-7620_acf02d,Data availability statementSimulated datasets are available to be requested from the corresponding author. The observational data can be retrieved from the National Meteorology Agency of Ethiopia for the Wolaita Sodo station. WRF code can be obtained from WRF website freely.,False,True,True dataset,10.1038_s41586-023-05989-7,doi10.1038_s41586-023-05989-7,Data availabilityThe 16S rRNA and metagenomics sequencing reads are available on NCBI under BioProject PRJNA822660. The mass spectrometry proteomics datasets are available through the ProteomeXchange Consortium in the PRIDE79 partner repository with dataset identifier PXD038906. The targeted and non-targeted bile acid metabolomics datasets are available on Metabolomics Workbench under project numbers ST002073 and ST002075. The minimum datasets necessary for reproduction of figures or extended research related to this article are available on GitHub at https://github.com/jgrembi/capscan-profiling-human-intestine.Code availabilityCustom code for the generation of figures and statistical calculations in this manuscript is available on Zenodo at 10.5281/zenodo.7683655 (ref. 80) and GitHub at https://github.com/jgrembi/capscan-profiling-human-intestine.,False,True,True dataset,10.1038_s41598-022-27193-9,doi10.1038_s41598-022-27193-9,Data availability The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pone.0232695,doi10.1371_journal.pone.0232695,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pgen.1009334,doi10.1371_journal.pgen.1009334,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pwat.0000075,doi10.1371_journal.pwat.0000075,"Data Availability Statement To ensure confidentiality of participants’ information as agreed up on during Ethical approval and Consent Process, qualitative interview transcripts’ file is only visible to the direct research team or through Mbarara University of Science and Technology Research Ethics Committee, P.O. Box 1410 Mbarara, Tel: +256-48-543-3795, Fax: +256-48-542-0782, E-mail: irc@must.ac.ug, mustirb@gmail.com since they are not publically available.",False,True,False dataset,10.1186_s13059-021-02387-y,doi10.1186_s13059-021-02387-y,"Availability of data and materialsAll data newly generated in this study is disclosed in the published manuscript. The plasmids used for local production of LAMP enzymes have been deposited on Addgene (#170277, 170278, 170279).",False,True,False dataset,10.1371_journal.pone.0262792,doi10.1371_journal.pone.0262792,Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.3390_biom12081122,doi10.3390_biom12081122,"Data Availability Statement: NMR data and pulse sequences are available at https://comdnmr. nysbc.org/comd-nmr-dissem, (accessed on 27 June 2022).",False,True,False dataset,10.1073/pnas,doi10.1073/pnas,Materials and Data Availability. Requests for reagents and code should be directed to the corresponding author. RPPA data are available on Figshare at (https://figshare.com/articles/RPPA_data/12199835/1).,True,True,True dataset,10.1371_journal.pone.0243633,doi10.1371_journal.pone.0243633,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1038_s41467-022-29612-x,doi10.1038_s41467-022-29612-x,Data availability The data that support the findings of this study are available from the corresponding author (Y.O.) upon reasonable request.,False,True,False dataset,10.1371_journal.pone.0244089,doi10.1371_journal.pone.0244089,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pone.0262642,doi10.1371_journal.pone.0262642,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pone.0232245,doi10.1371_journal.pone.0232245,"Data Availability Statement Full details on the methods and the clinical studies included in the network meta-analysis that informed the economic analysis are provided in Mavranezouli et al., Psychol Med. 2020 Mar;50(4):542-555. doi: 10.1017/S0033291720000070. All other relevant data are within the paper and its Supporting Information files.",False,True,False dataset,10.1038_s41598-019-49459-5,doi10.1038_s41598-019-49459-5,Data Availability All data analyzed during this study is included in Supplementary Information files.,False,True,False dataset,10.3390_ijerph20031722,doi10.3390_ijerph20031722,Data Availability Statement: The raw data and coding framework used in this study can be accessed on request from the corresponding author.,False,True,False dataset,10,doi10,Data availability The Whole Exome Sequencing and RNA-seq data that support the findings of this study have been deposited in dbGAP with accession code # phs002482.v1.p1. All relevant data supporting the findings of this study are available in the manuscript and its supplementary information file and source data file. Source data are provided with this paper.,False,True,True dataset,10.1371_journal.pone.0301029,doi10.1371_journal.pone.0301029,Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1088_1748-9326_acffde,doi10.1088_1748-9326_acffde,Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pclm.0000362,doi10.1371_journal.pclm.0000362,"Data Availability Statement: The cancer incidence, NDVI, precipitation, temperature, solar radiation, ozone concentration, population density, and other covariates are available online: CI5PLUS: CANCER INCIDENCE IN FIVE CONTINENTS TIME TRENDS: https://ci5.iarc.fr/CI5plus/Pages/download.aspx; The Surveillance, Epidemiology, and End Results (SEER) Program: https://seer.cancer.gov/data/; USGS Landsat 5 TM Collection 2 Tier 1 TOA Reflectance, USGS Landsat 7 Collection 2 Tier 1 TOA Reflectance: https://www.usgs.gov/landsat-missions/landsat-data-access; ERA5-Land Daily Aggregated - ECMWF Climate Reanalysis: https://cds.climate.copernicus.eu/cdsapp#!/search?type=dataset; TOMS and OMI Merged Ozone Data: https://developers.google.com/earth-engine/datasets/catalog/TOMS_MERGED; GHS-POP R2023A - GHS population grid multitemporal (1975-2030): https://data.jrc.ec.europa.eu/dataset/2ff68a52-5b5b-4a22-8f40-c41da8332cfe; Global/Regional estimates (V5.GL.03) of surface PM2.5: https://sites.wustl.edu/acag/datasets/surface-pm2-5/; CEIC: Global Economic Data, Indicators, Charts & Forecasts https://www.ceicdata.com/en/products; Global Burden of Disease Study 2019 (GBD 2019) Smoking Tobacco Use Prevalence 1990-2019: https://ghdx.healthdata.org/record/ihme-data/gbd-2019-smoking-tobacco-use-prevalence-1990-2019; Code availability: https://github.com/johnjiresearchlab/ClimateChangeCancer.",False,True,True dataset,10.1371_journal.pdig.0000447,doi10.1371_journal.pdig.0000447,Data Availability Statement: The human RNA raw sequencing data in this study requires deposit into the Database of Genotypes and Phenotypes (dbGAP) of the National Center for Biotechnology Information (United States National Library of Medicine) with controlled access. The data will be available through dbGaP (https://www.ncbi.nlm.nih.gov/gap/) under accession number: phs003112.v1.p1. The public RNA data used for validation in this study is available in the GEO database under accession number GSE142530 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE142530). Proteomic data can be found in the MassIVE repository under accession number MSV000089168.,False,True,True dataset,10.1038_s41586-023-06322-y,doi10.1038_s41586-023-06322-y,"Data availabilityThe data supporting the findings of this study are available within the paper and its Supplementary Information files. Sequences for all the sgRNAs used in this study are provided in Supplementary Table 1. Genome-wide CRISPR screening data are provided in Supplementary Tables 2 and 3. RNA-seq data are provided in Supplementary Tables 4 and 5. The raw RNA-seq data have been deposited and made publicly available in the NCBI Gene Expression Omnibus with accession number GSE233548. Full versions of all blots are provided in Supplementary Fig. 1. The gating strategies of flow cytometry are provided in Supplementary Fig. 2. Gene expression data derived from nasopharyngeal swab samples is publicly available in dbGaP (https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?login=&page=login) with accession no. phs002433.v1.p1. The human genome reference (hg38) used in the RNA-seq analysis is available in the NCBI genome assembly with accession number GCF_000001405.39. The protein expression profiles are available in the web-based Human Protein Atlas database (https://www.proteinatlas.org/). The transcriptional-factor binding profiles are available in the web-based JASPAR database (https://jaspar.genereg.net/). The materials, reagents and other experimental data are available from the corresponding author upon request. Source data are provided with this paper.Code availabilityThe source code used for calculating membrane bending rigidity has been deposited in Zenodo (10.5281/zenodo.7948870). The publicly available code used for MDS is referenced in the Methods.",False,True,True dataset,10.1371_journal.pone.0222343,doi10.1371_journal.pone.0222343,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1038_s41598-023-32045-1,doi10.1038_s41598-023-32045-1,Data availabilityAll the data are available online in Replication data to Prostaglandin synthases and pro-inflammatory cytokine gene expression dynamics in bovine endometrial cells exposed to cow blood plasma small extracellular vesicles (sEV) reflect the fertility breeding value—Harvard Dataverse79.,False,True,False dataset,10,doi10,"Data Availability Statement This manuscript has no associated data or the data will not be deposited. [Authors’ comment: The datasets generated during and/or analysed during the current study are available in the repository ‘Supplemental data for material radiopurity control in the XENONnT experiment’, https://zenodo.org/record/5767294.]",False,True,True dataset,10.1371_journal.pone.0284934,doi10.1371_journal.pone.0284934,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pone.0262773,doi10.1371_journal.pone.0262773,Data Availability Statement The traction force microscopy code developed for this project is available at https://github.com/usschwarz/DirectMethod.,False,True,True dataset,10.1016_j.molcel.2023.05.013,doi10.1016_j.molcel.2023.05.013,Data and code availabilityAll Illumina NGS and Oxford Nanopore Technologies (ONT) sequencing data generated from this publication have been deposited and are publicly available as of the date of publication. Accession numbers are listed in the key resources table.All original code for transposition junction NGS reads analysis has been deposited to GitHub and Zenodo. DOI are listed in the key resources table.,False,True,True dataset,10.1371_journal.pclm.0000345,doi10.1371_journal.pclm.0000345,Data Availability Statement: The data that support the findings of this study are openly available via the ISIMIP data repository (https://data.isimip.org/). Summary results are included in the Supporting Information and detailed results for each site are available on the A.P.E.S. Wiki (wiki.iucnapesportal.org).,False,True,True dataset,10.1111_csp2.348,doi10.1111_csp2.348,DATA AVAILABILITY STATEMENT No new data were generated for this perspectives article.,False,True,False dataset,10.1371_journal.pone.0232176,doi10.1371_journal.pone.0232176,"Data Availability Statement The data underlying the results presented in the study are available from the Medical Information Mart for Intensive Care (MIMIC-III), a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. Because the data contain sensitive patient information, MIMIC-III has not made the data sets publicly available. More information about MIMIC-III can be found on their website (https://mimic.mit.edu/about/mimic/). To access this data, interested researchers must first complete the CITI “Data or Specimens Only Research” course (https://www.citiprogram.org/index.cfm?pageID=154&icat=0&ac=0) and then submit an application for credentialed access through PhysioNet (https://physionet.org/content/mimiciii/). For more detailed instructions on how to apply for data access, please see the Supporting Information files of this article. This study used the publicly available Multiparameter Intelligent Monitoring in Intensive Care (MIMIC) III database version 1.4.",False,True,True dataset,10.1088_1361-6641_ad0dac,doi10.1088_1361-6641_ad0dac,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s41586-023-06257-4,doi10.1038_s41586-023-06257-4,"Data availabilitySequencing data are available from the National Center for Biotechnology Information Small Read Archive under the accession number PRJNA848233. Mouse genome sequence and annotation (build mm10/GRCm38.92) were downloaded from the ftp sites https://ftp.ensembl.org/pub/release-92/fasta/mus_musculus/dna/ and https://ftp.ensembl.org/pub/release-92/gtf/mus_musculus/, respectively. Transposon consensus sequences were obtained from Repbase (v.27.02; https://www.girinst.org/repbase/).Code availabilityCode used in this work has been deposited at GitHub (https://github.com/ildargv/Gainetdinov_et_al_2023).",True,True,True dataset,10.1088_1361-6528_acf3ee,doi10.1088_1361-6528_acf3ee,Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1186_s12879-023-08167-2,doi10.1186_s12879-023-08167-2,Data availabilityThe datasets used and/or analysed during the current study are available from the corresponding author upon reasonable request.,True,True,False dataset,10.1088_1402-4896_ad1233,doi10.1088_1402-4896_ad1233,Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pone.0251177,doi10.1371_journal.pone.0251177,"Data Availability Statement The data underlying this study are owned by Youth19 (https://www.youth19.ac.nz/) and are available upon request. Interested and qualified researchers may submit data access requests to https://www.youth19.ac.nz/contact. The authors are members of the Youth2019 research group. However, other researchers would be able to access the same data on request.",False,True,False dataset,10.1126_science.add5327,doi10.1126_science.add5327,Data and materials availability: All sequencing data have been deposited at the Gene Expression Omnibus (GEO) under accession GSE207943. An interactive data browser to plot gene expression trends on tSNE or FDL visualizations of scRNA-seq data is accessible at http://pdac-progression-browser.us-east-1.elasticbeanstalk.com. Code for data analysis is available at https://github.com/dpeerlab/pdac-progression (DOI: 10.5281/zenodo.7738450). KC-shIL33 ESCs for the production of EPO-GEMMs are available from the corresponding author (S.W.L.) upon request.,True,True,True dataset,10.1038_s41467-019-09354-z,doi10.1038_s41467-019-09354-z,Data availability All data generated during this study supporting its findings are available within the paper and the Supplementary Information. All data are available from the corresponding author upon reasonable request.,False,True,False dataset,10.1371_journal.pone.0285756,doi10.1371_journal.pone.0285756,"Data Availability Statement All raw sequencing data and genome assemblies presented here are available at the NCBI under the Bioproject IDs PRJNA886864, PRJNA886865 and PRJNA886875.",False,True,False dataset,10.7717_peerj.10648,doi10.7717_peerj.10648,Data Availability The following information was supplied regarding data availability: The raw data and the code are available in the Supplemental Files.,False,True,True dataset,10.1038_s41590-023-01558-2,doi10.1038_s41590-023-01558-2,"Data availabilityAll iMGL data have been deposited on Terra, including raw and Cell Ranger outputs of iMGL (H1 and CW50118, CW500036 and CW70437) scRNA-seq, fastq and bam files of iMGL untreated and treated with ANs for ATAC-seq, and fastq and bam files of MITF-overexpression and mCherry control bulk RNA sequencing. Summary level data are available at https://app.terra.bio/#workspaces/Stevenslab/public_iMGLdatasets. Raw data are available via managed access at DUOS (https://duos.org); ID: DUOS-000151. Any additional data are available from the corresponding authors.Code availabilityCode is available from the corresponding authors.",True,True,True dataset,10.1371_journal.pone.0244447,doi10.1371_journal.pone.0244447,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pbio.3000484,doi10.1371_journal.pbio.3000484,"Data Availability Statement Code and key data for Figs 5G, 6B, 8E, and S2–S4 Figs are available at https://github.com/mikepab/ratiometric-gpcr-particle-sims. Code for Figs 2G, 4D, 4E, 8B, and 8C is available at https://github.com/DebrajGhose/Ratiometric-GPCR-signaling-enables-directional-sensing-in-yeast. All other relevant data are available in S1 Data spreadsheet.",False,True,True dataset,10.1016_j.xgen.2023.100356,doi10.1016_j.xgen.2023.100356,Data and code availabilityIndividual level SNP-array data is part of the Psychiatric Genomic Consortium with the corresponding privacy agreement. Access can be provided by applying through this website (https://www.med.unc.edu/pgc/shared-methods/how-to/). Whole genome sequncing data for validation experiments will be uploaded to the NIMH Data Archive after publication NDA: (https://nda.nih.gov/).Filtered sCNV callset is inTable S2.Scripts used to generate the main figures and analyses are available in a frozen Zenodo repository Zenodo: https://doi.org/10.5281/zenodo.7778664.PyMOL was used for ABCB11 schematic in Figure 4 using PBID: 6LR0.,False,True,True dataset,10.1371_journal.pcbi.1011956,doi10.1371_journal.pcbi.1011956,"Data Availability Statement: The development of PeDViS is part of a research project that develops decision support tools for practitioners to limit SARS-CoV-2 transmission inside their venues. An open-access web-based simulation environment was created, named the SamenSlimOpen App (SSO app: https://www.samenslimopen.nl/de-tool/). The PeDViS model is at the core of this app (Section C in S1 Text). All code for the PeDViS model and data to recreate the described experiments are openly available on Gitlab (https://git.wur.nl/sso-public/pedvis).",False,True,True dataset,10.1038_s41588-023-01424-9,doi10.1038_s41588-023-01424-9,"Data availabilityPublicly available ChIP-seq datasets used in the present study: accession nos. GSM1817193 and GSM714811 for NR2F1; GSM714812 for NR2F2; GSM935589 for GATA2; and GSM1010738 and GSM1602667 for GATA3. Conserved TF-binding sites were obtained using rVista 2.0 (https://rvista.dcode.org). Additional epigenetic data were explored using the ENCODE database (https://www.encodeproject.org). GRCh37/hg19 human reference genome under Sequence Read Archive (SRA) accession no. PRJNA31257 and GRCm38/mm10 mouse reference genome under SRA accession no. PRJNA20689 were used for the alignment of human and mouse sequencing data, respectively. GnomAD and 1,000 genome frequencies were extracted from https://gnomad.broadinstitute.org and https://www.internationalgenome.org, respectively. Common structural variant data were obtained from the DGV (http://dgv.tcag.ca/dgv/app/home) and GoNL SV database (https://www.nlgenome.nl/login). Exome sequence and SNP data from a subset of participants are available through dbGaP Phs001383.v1.p1. WGS data from Cohort 1 participants are available through dbGaP Phs001247.v1.p1; Radboudumc consent does not allow for broad sharing via repositories and, thus, Cohort 2 WGS data are available on request and after a positive evaluation by a local data access committee confirming that the proposed re-use is in line with original consent obtained. ScRNA-seq and CUT&Tag sequencing data are available through the National Center for Biotechnology Information Gene Expression Omnibus SuperSeries accession no. GSE223274. LacZ images are uploaded to the Vista enhancer browser (https://enhancer.lbl.gov) and can be retrieved by their human coordinates as follows: hs2664 (cRE1) chr3:128,175,331–128,177,163; hs2665 (cRE2) chr3:128,177,164–128,179,169; hs2666 (cRE3) chr3:128,186,421–128,188,215; hs2667 (cRE1 + cRE2) chr3:128,175,331–128,179,169; and hs2668 (cRE2 + cRE3) chr3:128,177,164–128,188,215. Mice are available on request. Source data are provided with this paper.Code availabilityThe codes used for scRNA-seq and single-cell CUT&Tag data processing and analyses are available at https://zenodo.org/badge/latestdoi/637923997.",False,True,True dataset,10.1371_journal.ppat.1011251,doi10.1371_journal.ppat.1011251,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0240850,doi10.1371_journal.pone.0240850,Data Availability Statement All relevant data are within the paper and it’s supporting information files. There is no separate data set to share.,False,True,False dataset,10,doi10,"Data availability statement No data are available. The data are pseudonymised according to national (Swedish) and European Union legislation, and cannot be anonymised and published in an open repository. Participants in the trial have not consented for their data to be shared with other international researchers for research purposes.",False,True,False dataset,10.1088_2053-1591_ad13cc,doi10.1088_2053-1591_ad13cc,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://www.scholarmate.com/P/bErAf2.,False,True,False dataset,10.1371_journal.pgen.1007911,doi10.1371_journal.pgen.1007911,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pone.0225522,doi10.1371_journal.pone.0225522,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1038_s41598-023-32207-1,doi10.1038_s41598-023-32207-1,Data availabilityAnonymised survey data (duplicates only removed) and focus group data (presented at theme level) is available online using the https://doi.org/10.17026/dans-xp4-j8t7.,False,True,False dataset,10.1371_journal.pcbi.1007309,doi10.1371_journal.pcbi.1007309,"Data Availability Statement The datasets supporting the conclusions of this article are available in the GEO repository under the accession GSE125279, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE125279. The miRWoods software is available at https://github.com/hendrixlab/miRWoods.",True,True,True dataset,10.3389_fimmu.2021.668217,doi10.3389_fimmu.2021.668217,"DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article will be made available by the authors, without undue reservation.",False,True,False dataset,10.1186_s40360-020-00405-6,doi10.1186_s40360-020-00405-6,Availability of data and materialsData-sets generated and/or analyzed during the current study are available in the thesis submitted by the first author in the University library and also available with the corresponding author on reasonable request.,True,True,False dataset,10.1126_science.abe9403,doi10.1126_science.abe9403,"Data and materials availability: Further information and requests for resources and reagents should be directed to and will be fulfilled by N.J.K. (nevan.krogan@ucsf.edu). The MS proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD021588 (100). An interactive version of PPI data can be found at https://kroganlab.ucsf.edu/network-maps. Atomic coordinates and the cryo-EM map of the reported Tom70-ORF9b structure have been deposited in the Protein Data Bank under accession code 7KDT and in the Electron Microscopy Data Bank under accession code EMD-22829. Expression vectors used in this study are readily available from the authors for biomedical researchers and educators in the nonprofit sector. The Aetion Evidence Platform used for the clinical analysis is available under license from Aetion, New York, NY. To protect patient privacy, data used in real-world analyses are available for inspection by qualified researchers under confidentiality and third-party agreements with Aetion and/or HealthVerity. This work is licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/. This license does not apply to figures/photos/artwork or other content included in the article that is credited to a third party; obtain authorization from the rights holder before using such material.",False,True,True dataset,10.1371_journal.ppat.1011341,doi10.1371_journal.ppat.1011341,"Data Availability Statement Density maps of qMCRV and tMCRV with icosahedral symmetry and D5 symmetry have been deposited in the EMDataBank (EMDB) under entries EMD-33403 for icosahedral qMCRV, EMD-33404 for D5 symmetric qMCRV, EMD-33405 and EMD-33406 for icosahedral and D5 symmetric tMCRV, respectively. Atomic models for the asymmetric unit of MCRV for both icosahedral and D5 reconstruction have been deposited in the Protein Data Bank (PDB) under entries 7XR2 and 7XR3 respectively.",True,True,True dataset,10.1371_journal.ppat.1011443,doi10.1371_journal.ppat.1011443,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pone.0216797,doi10.1371_journal.pone.0216797,"Data Availability Statement The data generated and analyzed during the current study are not publicly available as full transcripts for ethical reasons because even after removing directly identifiable information such as names or addresses, participant identify may be difficult to fully conceal and research locations may remain potentially identifiable, presenting a risk of deductive disclosure. However, relevant excerpts are available from the corresponding author Aurélie Brunie (abrunie@fhi360.org), author Rebecca Callahan (rcallahan@fhi360.org) or institutional access via opendata@fhi360.org on request.",False,True,True dataset,10.1371_journal.pone.0297420,doi10.1371_journal.pone.0297420,Data Availability Statement: All relevant data are within the manuscript and its Supporting information files.,False,True,True dataset,10.2196_46793,doi10.2196_46793,Data Availabilty The data sets generated during or analyzed during this study are available from the corresponding author on reasonable request.,True,True,False dataset,10.1186_s12879-022-07139-2,doi10.1186_s12879-022-07139-2,"Availability of data and materialsDue to their sensitive nature, restrictions apply to the availability of the data that support the findings, which were used under license for the current study, and so are not publicly available. Data are however available from the authors upon reasonable request and with permission of Cedars-Sinai Medical Center.",False,True,False dataset,10.1371_journal.pone.0283546,doi10.1371_journal.pone.0283546,Data Availability Statement We have uploaded the dataset from our experiment to a public repository RepOD - https://doi.org/10.18150/KFMBPG.,False,True,False dataset,10.1038_s41586-023-05854-7,doi10.1038_s41586-023-05854-7,Data availability The cryo-EM map has been deposited in the Electron Microscopy Data Bank under the accession code EMD-29637. The corresponding atomic model has been deposited in the Protein Data Bank under accession code 8FZQ. The data that support the findings of this study are available from the authors upon reasonable request.,False,True,True dataset,10.1088_1361-6560_acfec5,doi10.1088_1361-6560_acfec5,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary information files).,False,True,False dataset,10.1371_journal.pone.0214982,doi10.1371_journal.pone.0214982,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1186_s12884-021-03852-z,doi10.1186_s12884-021-03852-z,Availability of data and materialsThe datasets generated and/or analyzed during the current study are not publicly available to guarantee the anonymity of individuals. Please contact Tim A. Bruckner (Tim.bruckner@uci.edu) to request access to the datasets used in this study.,False,True,False dataset,10.1186_s12902-019-0370-7,doi10.1186_s12902-019-0370-7,Availability of data and materialsThe datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1186_s40249-020-0628-3,doi10.1186_s40249-020-0628-3,"Availability of data and materialsAll collected data is confidentially kept at both the Global Health Institute, University of Antwerp (Belgium) and the Infectious Disease Institute in Kampala (Uganda). The datasets are available from the corresponding author on a reasonable request.",False,True,False dataset,10.2196_43669,doi10.2196_43669,"Data Availability The WIC2 team agrees to share deidentified individual participant data that underlie the results reported in this study, the study protocol, and the statistical analysis plan. Data will be available for 6 months following publication for 5 years. Data will only be shared with academic researchers who provide a methodologically sound proposal to achieve aims related to primary or secondary outcomes and upon completion of a data use agreement. Requests should be directed to Suzanne.Mitchell2@umassmed.edu.",False,True,False dataset,10.1126_sciadv.ade8778,doi10.1126_sciadv.ade8778,Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. The cis­cleaving VSV-based Mpro assay can be provided by D.v.L. pending scientific review and a completed material transfer agreement. Requests for the cis­cleaving VSV-based Mpro assay should be submitted to D.v.L. (dorothee.von-laer@i-med.ac.at). Requests for the transfection-based gain-of-signal Mpro system should be submitted to R.S.H. (rsh@uthscsa.edu).,True,True,False dataset,10.1088_1402-4896_ad1651,doi10.1088_1402-4896_ad1651,Data availability statementNo new data were created or analysed in this study.,False,True,False dataset,10.1073_pnas.2221064120,doi10.1073_pnas.2221064120,"Data, Materials, and Software AvailabilityAll study data are included in the article, SI Appendix and/or the OSF repository (https://osf.io/r4zsp/?view_only=6da09fcb508d4ab2b93c1d13ee406b18) (28).",True,True,True dataset,10.1371_journal.pone.0264137,doi10.1371_journal.pone.0264137,Data Availability Statement The data was stored in Zenodo. The digital object identifier is:10.5281/zenodo.5999622.,False,True,False dataset,10.1038_s41467-023-39837-z,doi10.1038_s41467-023-39837-z,Data availabilityAll data used to generate all figures is available in Supplementary Data 1. Viral sequences have been deposited in GenBank with the accession codes OQ948507-OQ953743.Code availabilityAll custom plotting scripts and code used for modeling and to generate all figures are freely available at https://github.com/dbrvs/IPDAmodel/releases/tag/v1.,False,True,True dataset,10,doi10,Data availability statement All data relevant to the study are included in the article or uploaded as online supplemental information. The model used is available online at https://www.paho.org/en/provac-toolkit.,False,True,False dataset,10.1371_journal.pone.0239320,doi10.1371_journal.pone.0239320,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10,doi10,"Data availability The source data for graphs are available in Supplementary data 1. Uncropped Western blot images are available in Supplementary Fig. 5. Plasmids for S300P-LOXL2 (AddGene ID 200061), ΔN-LOXL2 (AddGene ID 200062), and R338G/V339P-LOXL2 (AddGene ID 200063) are available from Addgene.",False,True,False dataset,10.1186_s12917-019-1925-6,doi10.1186_s12917-019-1925-6,Availability of data and materialsThe datasets supporting the results of this document are contained within the article. Any additional data may be requested to the corresponding author.,False,True,False dataset,10.1261_rna.079608.123,doi10.1261_rna.079608.123,DATA DEPOSITION All sequencing data generated in this study is deposited in the Gene Expression Omnibus (GEO) under accession number GSE223557. Human data is in subseries GSE223555 and Drosophila data is in subseries GSE223556. The TRIBE analysis pipeline is publicly available at https://github.com/rosbashlab/HyperTRIBE. All scripts used in this manuscript are available at https://github.com/rosbashlab/Comparison-of-TRIBE-and-STAMP.,False,True,True dataset,10.1371_journal.pone.0284204,doi10.1371_journal.pone.0284204,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1155_2021_6675579,doi10.1155_2021_6675579,Data Availability All data related to the findings of this study are available from the Multiple Indicator Cluster Survey (MICS) website upon request,False,True,False dataset,10.1371_journal.pone.0287610,doi10.1371_journal.pone.0287610,"Data Availability Statement The data underlying the results presented in the study are available from Chinese public database of Statistics Yearbook, i.e. Jiangsu Statistics Yearbook (http://tj.jiangsu.gov.cn/col/col86293/index.html), Jiangsu Culture and Tourism Statistics Yearbook (https://navi.cnki.net/knavi/yearbooks/YJSWH/detail?uniplatform=NZKPT&language=chs) China City Statistics Yearbook (https://navi.cnki.net/knavi/yearbooks/YZGCA/detail?uniplatform=NZKPT&language=chs), and the Statistics Yearbooks of the 13 cities (https://navi.cnki.net/knavi/yearbooks/YNJTJ/detail?uniplatform=NZKPT&language=chs).",False,True,True dataset,10.1371_journal.pdig.0000242,doi10.1371_journal.pdig.0000242,"Data Availability Statement One of the study funder, the COVID-19 Immunity Task Force (CITF), has a data sharing protocol for all funded projects. We will transfer relevant anonymized study data as available to the CITF as a part of these standard data sharing requirements. This is submitted together with a data dictionary defining each field in the set. External researchers will be able to submit a request to the CITF to receive access to all CITF data through their data access committee. The CITF will employ a rigorous checklist to ensure that these external requests follow all necessary ethical and privacy protocols. The data provided to the CITF will be stored on the CITF Database. The data on the CITF Database will be held under the custodianship of McGill University or one of its collaborators and be shared via the cloud, both nationally and internationally. Data in the CITF Database can be used by researchers across Canada and in other countries following Data Access Committee (DAC) approval. These transfers will also be made in compliance with Canadian law and research ethics. A DAC will be responsible for reviewing applications for access to the data and for approving applications that respect the privacy and access policies of the CITF. The DAC will require that researchers confirm that their intended research activities have received necessary ethics approvals. The data may also be shared with other COVID- 19 research databases that follow similar protections and procedures as the CITF Database. Further the main study protocol, statistical analysis plan, informed consent form and full protocol are available on the study website www.stopcov.ca.",False,True,False dataset,10.1088_1361-648x_ad0dcc,doi10.1088_1361-648x_ad0dcc,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pbio.3002117,doi10.1371_journal.pbio.3002117,Data AvailabilityAll data is available in the supplementary tables. RNA and mtDNA sequencing data has been deposited in GEO under identifier GSE219203 and in SRA under PRJNA910556. Code can be found at https://github.com/MoothaLab/ercc1-mouse-rob.,False,True,True dataset,10.1186_s13071-020-04129-8,doi10.1186_s13071-020-04129-8,"Availability of data and materials All data generated or analysed during this study are included in this published article. The type material was deposited in the Australian Helminthological Collection, South Australian Museum. DNA sequence data generated during this study are available from the GenBank database under the accession nos. MT080008-MT080027.",False,True,False dataset,10.1088_1361-6420_ad08ed,doi10.1088_1361-6420_ad08ed,Data availability statementNo new data were created or analysed in this study.,False,True,False dataset,10.1136_jitc-2023-006921,doi10.1136_jitc-2023-006921,Data availability statementData are available upon reasonable request.,False,True,False dataset,10.1038_s41467-023-41013-2,doi10.1038_s41467-023-41013-2,Data availabilityCaDNAno files and sequences of DNA nanostructures are available online. A cryo-ET video is available online. Source data are provided with this paper.,True,True,False dataset,10.3390_e24040456,doi10.3390_e24040456,Data Availability Statement: Data and results can be found in Section 3 and Appendix A.,False,True,False dataset,10.1590_acb382323,doi10.1590_acb382323,Data availability statement All generated data were presented in this study.,False,True,False dataset,10.1038_s41467-023-35820-w,doi10.1038_s41467-023-35820-w,"Data availability The compiled database and the MSI data generated in this study are provided in Supplementary Data 1 and 2 respectively with an inter- active HTML interface plot of the geological Δ33S record through time provided as Supplementary Data 3. Code availability The code used in this study can be found online in a GitHub repository https://github.com/buveges/Sulfur-MSI-Database along with an updating version of the MSI database. The MATLAB model was ori- ginally created by S.O. for Luo et al.22, and subsequently modified and augmented by S.O. and B.T.U. for this study. The R code was writ- ten by B.T.U.",False,True,True dataset,10.1371_journal.pone.0237277,doi10.1371_journal.pone.0237277,Data Availability Statement All relevant data are available from public sources and are aggregated in the github repository pertaining to the manuscript: https://github.com/zidatalab/causalcovid19.,True,True,True dataset,10.1172_jci.insight.150114,doi10.1172_jci.insight.150114,Data availability. The authors declare that the data supporting the findings of this study are available within the paper and its supplementary information files or are available in the public GEO database (accession GSE160984).,True,True,False dataset,10.1186_s13018-023-03907-1,doi10.1186_s13018-023-03907-1,Availability of data and materials The datasets used and analyzed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1186_s12872-019-1064-9,doi10.1186_s12872-019-1064-9,Availability of data and materialsThe datasets used and analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pone.0213888,doi10.1371_journal.pone.0213888,Data Availability Statement All relevant data are within the paper and the public repository GitHub at the following URL: https://github.com/kw-ictl/A-MPDU-802.11ac-delay.,False,True,True dataset,10.1080_15502783.2023.2206802,doi10.1080_15502783.2023.2206802,Availability of data and materialThe data presented in this study are available on request from the corresponding author.,False,True,False dataset,10.1088_1741-2552_acf959,doi10.1088_1741-2552_acf959,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s42005-022-01022-x,doi10.1038_s42005-022-01022-x,Data availability The data that support the findings of this study are available from the corresponding author upon request. Code availability The code that supports the findings of this study is available from the corresponding author upon request.,False,True,True dataset,10.1371_journal.pcbi.1007990,doi10.1371_journal.pcbi.1007990,Data Availability Statement All code and data are available at https://github.com/kpzoo/model-selection-for-epidemic-renewal-models.,False,True,True dataset,10.1080_15476286.2023.2231280,doi10.1080_15476286.2023.2231280,Data availability statementThe data that support the findings of this study can be accessed online at https://doi.org/10.6084/m9.figshare.c.6569116.,False,True,False dataset,10.1088_1361-6455_acf631,doi10.1088_1361-6455_acf631,Data availability statementThe data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1073_pnas.2220528120,doi10.1073_pnas.2220528120,"Data, Materials, and Software Availability GitHub hosts the FPalyze (github.com/whemphil/FPalyze) (59) R package. The custom scripts referenced in these methods are available on GitHub (github.com/whemphil/PRC2_Direct-Transfer_Manuscript) (60). pFastBac vectors for PRC2 expression have been deposited to AddGene (ID #125161-125165) by the Davidovich lab. All ligands and competitors are available from IDT via the sequences in SI Appendix, Table S2. Methodology on single-molecule simulations and equations can be found in SI Appendix, Materials and Methods. All other data are included in the manuscript and/or SI Appendix.",False,True,True dataset,10.5194_bg-19-5401-2022,doi10.5194_bg-19-5401-2022,"Code availability. Water column model code, Darwin- MITgcm model code, and output files are available at Zenodo (https://doi.org/10.5281/zenodo.6384810, Zakem, 2022).",False,True,True dataset,10.1088_1748-9326_ad0a1b,doi10.1088_1748-9326_ad0a1b,Data availability statementSAGE-IGP data are available from Harvard Dataverse at https://doi.org/10.7910/DVN/JUMXOL. Daily averaged atmospheric concentrations of PM2.5 data are available at https://app.cpcbccr.com/ccr/#/caaqm-dashboard-all/caaqm-landing/data.,False,True,False dataset,10.3389/fphys.2022,doi10.3389/fphys.2022,"Data availability statement The original contributions presented in the study are included in the article/supplementary materials, further inquiries can be directed to the corresponding author.",False,True,False dataset,10.1371_journal.pone.0287584,doi10.1371_journal.pone.0287584,Data Availability Statement All data files are available from the OSF database (https://doi.org/10.17605/OSF.IO/PQUNJ).,False,True,False dataset,10.3390_biom11050662,doi10.3390_biom11050662,Data Availability StatementThe authors confirm that the data supporting the findings of this study are available within the present article.,False,True,False dataset,10.1088_2058-9565_ad0a48,doi10.1088_2058-9565_ad0a48,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10,doi10,"Data availability Atomic coordinates of the CaKip3-MDN-ADP X-ray crystal structure have been deposited in the Protein Data Bank (PDB) under accession code 7LFF (Table 1). Atomic coordinates and corresponding cryo-EM density maps, including the half maps, masks and FSC curves used to estimate spatial resolution have been deposited in the Protein Data Bank (PDB) and Electron Microscopy Data Bank (EMDB) under the accession codes 7TQX, 7TQY, 7TQZ, 7TR0, 7TR1, 7TR2, 7TR3, and EMD-26074, EMD-26075, EMD-26076, EMD-26077, EMD-26078, EMD-26079, EMD-26080 (Table 2). Source data are provided with this paper.",False,True,True dataset,10.1088_2058-8585_ad0ea6,doi10.1088_2058-8585_ad0ea6,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.ppat.1011015,doi10.1371_journal.ppat.1011015,"Data Availability Statement With respect to Data Availability Statement statement, please amend to X-ray structural data has been deposited in the PDB repository under PDB ID 8BBY. Both the Raw RNA seq and whole genomic sequencing data have been deposited within Gene Expression Omnibus (GEO) repository and can be accessed using the reference ID GSE205747. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205747. All other relevant data are available within the manuscript and its Supporting information files.",False,True,True dataset,10.1088_1361-648x_ad1362,doi10.1088_1361-648x_ad1362,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s41467-021-25279-y,doi10.1038_s41467-021-25279-y,"Data availability The raw data and gene expression matrices for mouse tumor scRNA-seq data have been deposited in the Gene Expression Omnibus as GSE175882. For human intestinal organoids, interactive visualization tools, metadata, and digital gene expression matrices can be found through the Broad Institute’s Single-Cell Portal as study SCP1457. Digital gene expression matrices annotated with cell types, photoactivation regions, and other metadata can also be found in Supplementary Data 1 (human intestinal organoids, corresponding to Fig. 2) and Supplementary Data 3 (mouse KP lung tumors, corresponding to Fig. 4). Gene lists corresponding to differential expression tests for human intestinal organoids and mouse KP lung tumors can be found in Supplementary Data 2 and 4, respectively. FASTQ data for the human intestinal organoids is available upon request and with a data use agreement. Source data are provided with this paper. Code availability Cell Profiler v 3.1.9 was used to segment microscopic images, and resulting data were analyzed using MATLAB R2020a. Sequencing data were demultiplexed using bl2fastq v2.17.1.14. Smart-Seq2 sequencing reads were aligned using STAR v2.5b and transcripts were quantified with RSEM v1.2.3. Seq-Well sequencing reads were aligned and processed according to the Drop-Seq Computational Protocol v2.0 (https://github.com/broadinstitute/Drop-seq). Single-cell RNA-seq analysis was performed in R version 4.0.2 using ggplot2 (v3.3.2130), Seurat (v4.0.1), and ComplexHeatmap (v2.7.3132). Gene ontologies were evaluated for enrichment using DAVID v6.8. Additional NMR processing was done with MestReNova (9.0.1) (Santiago de Compostela, Spain). MS data were processed using the MassHunter Workstation Software – Qualitative Analysis Version B.03.01 • build 3.1.346.6 • service pack 2 (Agilent Technologies). Code for analysis is available at https://github.com/ctzouanas/spacecat.",False,True,True dataset,10.1371_journal.pntd.0011948,doi10.1371_journal.pntd.0011948,"Data Availability Statement: Individual data for reproducing figures may be shared with outside investigators following UC Berkeley IRB approval, as data may contain potentially identifying patient information. Consent documents enable data sharing via collaboration but not public access to patient data. Please contact the UC Berkeley Committee for the Protection of Human Subjects at ophs@berkeley.edu or 510-642-7461 to arrange for data access. The materials and data used in this study are covered by standard data and material transfer agreements. Code used in this paper is available on GitHub at https://github.com/colinwarnes/Post-AcuteChikungunyaArthralgia.git.",False,True,True dataset,10.1371_journal.ppat.1012031,doi10.1371_journal.ppat.1012031,Data Availability Statement: Programming code and data necessary to generate plots shown in this manuscript were deposited at Github: https://github.com/SchSascha/Cal_Translocation. Raw sequencing data is submitted under project accession number GSE237496 to the GEO gene accession omnibus.,True,True,True dataset,10.1371_journal.pone.0261952,doi10.1371_journal.pone.0261952,Data Availability Statement Data cannot be shared publicly due to restrictions by law. Data can be requested through the Statistics Finland (info@stat.fi) and Finnish Social and Health Data Permit Authority Findata (info@findata.fi) after approval from relevant ethical committees.,True,True,False dataset,10.1126_sciimmunol.ade5872,doi10.1126_sciimmunol.ade5872,"DATA AND MATERIALS AVAILABILITY The accession number for RNA-sequencing data generated in this study is GEO:GSE196549. The remaining data supporting the findings of this study are available in the article, its supplementary information files, and/or from the corresponding author by request.",False,True,True dataset,10.1126_science.add6162,doi10.1126_science.add6162,Data and materials availability:All newly generated materials in the manuscript are available upon reasonable request. All data are available in the manuscript and associated supplementary materials.,True,True,True dataset,10.1371_journal.pntd.0012027,doi10.1371_journal.pntd.0012027,Data Availability Statement: All relevant data are in the manuscript and its Supporting information files.,False,True,True dataset,10.1073_pnas.2218085120,doi10.1073_pnas.2218085120,"Data, Materials, and Software Availability Datasets and software are available by requests to the corresponding author. Microscopy images data have been deposited in Dryad (doi:10.5061/dryad.83bk3j9ws) (82).",False,True,True dataset,10.1088_1361-6560_ad0a58,doi10.1088_1361-6560_ad0a58,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://doi.org/10.5281/zenodo.8164568.,False,True,False dataset,10.1186_s12909-023-04193-5,doi10.1186_s12909-023-04193-5,Availability of data and materials All data generated or analysed during this study are included in this published article and its supplementary information files.,False,True,False dataset,10.1016_j.cell.2023.03.031,doi10.1016_j.cell.2023.03.031,"Data and code availability • Bulk RNA-, 10x singe-cell RNA-, ATAC-sequencing data and Cut-and- Run sequencing data from this study have been deposited in the Gene Expression Omnibus (https://www.ncbi.nlm.nih.gov/sra) under accession codes PRJNA731164, PRJNA885018, and PRJNA731304. All other data in the manuscript, supplementary materials and source data are available from the corresponding author upon request. • All original code is available from the lead contact upon request. • Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.",False,True,True dataset,10.3390_genes14061303,doi10.3390_genes14061303,Data Availability Statement Not applicable.,False,True,False dataset,10.1093_database_baad043,doi10.1093_database_baad043,"Data availabilityGeniePool source code is available in the GitHub repository (https://github.com/geniepool).GeniePool web UI is available at: https://GeniePool.linkREST API is available using: http://api.geniepool.link/rest/index/$reference/$coordinates (with hg38/hg19 for reference and chr:start-end for coordinates, e.g. http://api.geniepool.link/rest/index/hg38/1:12345789-123456798). Further information and instructions regarding the API are available under the frequently asked questions (FAQ) section of the web UI.",False,True,True dataset,10.1038_s41598-021-81432-z,doi10.1038_s41598-021-81432-z,"Data availability After signing a material transfer agreement, limited amounts of the monoclonal antibodies and bioconjugates herein described are available for evaluation purposes upon request to the corresponding author.",False,True,False dataset,10.1371_journal.pclm.0000290,doi10.1371_journal.pclm.0000290,Data Availability Statement: All datasets and code used here are available at the third-party repositories GitHub (https://bit.ly/3pvUkQI) and Open Science Framework (https://osf.io/gsjex/).,False,True,True dataset,10.1371_journal.pwat.0000127,doi10.1371_journal.pwat.0000127,Data Availability Statement: The original contributions presented in the study are publicly available. The data can be found at the following: Service provider data can be accessed at: https://database.ib-net.org/countries_results?ctry=29&years=2018&type=report&ent=country&mult=true&report=1&table=true&chart=false&chartType=column&lang=EN&exch=1. 2018 DHS data is available on application via the public repository: https://dhsprogram.com/methodology/survey/survey-display-542.cfm. Regulator data is openly available and can be extracted from the following report: https://www.nwasco.org.zm/index.php/media-center/publications/water-supply-and-sanitation-sector-reports. All code and publicly available data has been provided as supplementary materials to allow full transparency and replication of the analysis that has been undertaken.,False,True,True dataset,10.1038_s41598-023-32581-w,doi10.1038_s41598-023-32581-w,Data availabilityThe datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pcbi.1011115,doi10.1371_journal.pcbi.1011115,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1101_gad.350434.123,doi10.1101_gad.350434.123,Data availability Sequencing data have been deposited in the Gene Expression Omnibus (GEO) under the accession code GSE228595. Scripts for data processing and analysis are available at https://github.com/albertdyu/BuTTSeq.,False,True,True dataset,10.1371_journal.pone.0215651,doi10.1371_journal.pone.0215651,"Data Availability Statement The wind and water level data is open access provided by the Swedish Meteorological and Hydrological Institute, SMHI, through www.smhi.se. The grain size data is available through an FTP server with address www.tvrl.se/caf/ftp/Sieved_grain_size_samples.xlsx. Model code, input and results files will not be provided open access but can be made available upon request. Contact Caroline Hallin at Lund University, Sweden, at caroline.hallin@tvrl.lth.se. Topographic and bathymetric data cannot be shared publicly because it has not been collected by the authors and is not open access. The topographic data are available from Ängelholm municipality. Requests to access the data should be sent to info@engelholm.se. The bathymetric data is owned by the Swedish Geological Survey (SGU) and can only be accessed by researchers who meet the criteria for access to this confidential data. For more information on how to access the bathymetric data, contact kundservice@sgu.se. Since the authors are not in possession of the topographic and bathymetric data, we cannot guarantee that the organizations who own this data will make it available to other researchers. However, the observed volumetric changes that are presented in the manuscript are sufficient for calibration and validation of the model.",False,True,True dataset,10.1038_s41467-023-38932-5,doi10.1038_s41467-023-38932-5,"Data availabilityThe three-dimensional cryo-EM density maps have been deposited into the Electron Microscopy Data Bank under accession numbers EMD-28552. The coordinates are deposited into the Protein Data Bank with accession number 8ERC. This study also cited published structures 7F3X (chicken MBOAT5 in complex with lyso-PC) and 7F40 (chicken MBOAT5 in complex with arachidonyl-CoA). The raw TLC, gel and blot data generated in this study are provided in the Source Data file. Source data are provided with this paper.",False,True,True dataset,10.1088_1367-2630_ad11b7,doi10.1088_1367-2630_ad11b7,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files). Data will be available from 25 April 2023.,False,True,False dataset,10.1073_pnas.2301987120,doi10.1073_pnas.2301987120,"Data, Materials, and Software AvailabilityThe data that support the findings of this study as well as the associated protocols are all presented in the paper. Bacterial strains and other reagents generated during the course of this study are available from the corresponding author upon reasonable request.",False,True,True dataset,10.1371_journal.pone.0284587,doi10.1371_journal.pone.0284587,"Data Availability Statement Illumina reads are available as FASTQ files in the NCBI Sequence Read Archive (SRA) repository, accession PRJNA847933 (https://dataview.ncbi.nlm.nih.gov/object/PRJNA847933?reviewer=nac1b0jr7e3tb4r1hgtsbcej7s). The DNA sequences used for host strain identification are deposited into GenBank (accession numbers ON704174 - ON704629).",False,True,True dataset,10.1073_pnas.2300099120,doi10.1073_pnas.2300099120,"Data, Materials, and Software Availability All study data are included in this article and/or SI Appendix.",True,True,True dataset,10,doi10,"Data availability Source data underlying Figs. 1–4, Figs. 6–9 and Supplementary Figs. 6 and 7 are available as a Source Data file. All other data that support the findings of this study, the custom software used and the newly generated mouse lines will be made available upon request.",False,True,True dataset,10.1038_s41586-023-05870-7,doi10.1038_s41586-023-05870-7,Data availability All plasmids generated during this work (Supplementary Table 7) are available from Addgene. Sequencing reads are available from the Sequence Read Archive under BioProject ID PRJNA929529. Uncropped gel and immunoblot images can be found in Supplementary Fig. 1. Source data are provided with this paper. All additional data are available from the authors upon request.,False,True,True dataset,10.1007_s00114-023-01842-z,doi10.1007_s00114-023-01842-z,Data availabilityData are provided as electronic supplementary material.,False,True,False dataset,10.1088_1361-6595_ad0836,doi10.1088_1361-6595_ad0836,Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1088_1361-651x_ad041b,doi10.1088_1361-651x_ad041b,Data availability statementThe data cannot be made publicly available upon publication because they contain commercially sensitive information. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.7150_ijbs.74123,doi10.7150_ijbs.74123,"Data Availability StatementGenerated Statement: The datasets analyzed in this manuscript are not publicly available. Requests to access the datasets should be directed to Yuming Huang, huangyuming@jsph.org.cn.",False,True,True dataset,10.1371_journal.pone.0229861,doi10.1371_journal.pone.0229861,Data Availability Statement Data cannot be shared publicly in order to protect participant confidentiality. All requests to review data that may include potential subject and/or patient identifiers will be reviewed by our University’s Privacy Office and Institutional Review Board to ensure adequate protection of subjects. Any dissemination approved by the University will be reviewed by a University honest data broker to ensure appropriate legal and ethical compliance with regulatory agencies. Requests for data should be addressed to Chris Harle at the University of Florida (charle@ufl.edu).,False,True,False dataset,10.1088_1361-6501_ad042c,doi10.1088_1361-6501_ad042c,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pgen.1010763,doi10.1371_journal.pgen.1010763,"Data Availability Statement Ros-2FM and Ros-2NM sequence reads are deposited at ENA under Accession PRJEB54033. Por-1SL, He-2SL and Ber-1SL raw sequence reads are deposited at ENA under Accession PRJEB43766. Jean-2NM, Vigo-1NM, Plou-2NM, Lou-2NM, Bria-1SL raw sequence reads are deposited at ENA under Accession PRJEB55328. RAD-seq reads for QTL mapping are deposited at ENA under Accession PRJEB55328. The CLUMA2.0 reference genome is available on the Open Research Data Repository of the Max Planck Society (EDMOND) (https://doi.org/10.17617/3.42NMN2). Results of the genome screens (Figs 3 and 4) are deposited on EDMOND (https://doi.org/10.17617/3.HUYLPR). All other data underlying the figures are given in Tables 1, S1, S2, S3, and S8.",True,True,True dataset,10.1371_journal.pone.0226037,doi10.1371_journal.pone.0226037,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1002_hbm.25667,doi10.1002_hbm.25667,DATA AVAILABILITY STATEMENT Data sharing is not applicable to this article as no new data were created or analyzed in this study.,False,True,False dataset,10.1371_journal.pone.0215622,doi10.1371_journal.pone.0215622,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.ppat.1010981,doi10.1371_journal.ppat.1010981,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.3390_genes14061279,doi10.3390_genes14061279,Data Availability Statement WGS sequence reads were submitted to the NCBI’s Bioproject database with the accession ID: PRJNA598939.,True,True,False dataset,10.1371_journal.pbio.3002514,doi10.1371_journal.pbio.3002514,Data Availability Statement: The GUIDE-seq raw sequencing reads are available at the Gene Expression Omnibus (GEO) under accession GSE229888,False,True,False dataset,10.1088_2515-7620_acf364,doi10.1088_2515-7620_acf364,Data availability statementThree datasets were used in this work and are openly available. JMA’s historical weather observation data are available at http://www.data.jma.go.jp/gmd/risk/obsdl/index.php. Electricity power supply from PV power-generating systems in each TDO can be accessed on the websites listed in table 10. Climate indexes of the SST in the Tropics are available from the JMA’s website at http://ds.data.jma.go.jp/tcc/tcc/products/elnino/index.html.,False,True,False dataset,10.3390_ijms241210191,doi10.3390_ijms241210191,Data Availability StatementThe data presented in this study are available on request from the corresponding author. The data are not publicly available due to privacy protection.,False,True,False dataset,10.1073_pnas.2108421118,doi10.1073_pnas.2108421118,Data Availability All study data are included in the article and/or SI Appendix.,True,True,False dataset,10.1186_s13071-020-04140-z,doi10.1186_s13071-020-04140-z,Availability of data and materials The dataset supporting the conclusions of this article is included within the article and its additional file.,True,True,False dataset,10.1016_j.esr.2022.101031,doi10.1016_j.esr.2022.101031,Data availabilityThe data that has been used is confidential.,False,True,False dataset,10.1088_2053-1591_acff3d,doi10.1088_2053-1591_acff3d,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s41467-020-19516-z,doi10.1038_s41467-020-19516-z,Data availability Data have been deposited to Mendeley data and are available at: 10.17632/4m7z3gy5yc.1. All relevant data are available from the corresponding author. Source data are provided with this paper.,False,True,False dataset,10.1038_s41586-023-06427-4,doi10.1038_s41586-023-06427-4,"Data availabilityAll data supporting the article, including the raw MINFLUX analysis output for each experimental condition, are provided as source data. Protein structures were obtained from RCSB Protein Data Bank (PIEZO1 6B3R, PIEZO1 7WLU and PIEZO2 6KG7) and the AlphaFold Protein Structure Database (PIEZO1 E2JF22). Raw data and all reagents not commercially available are available from the corresponding author upon reasonable request. Source data are provided with this paper.Code availabilityThe code for iPALM data pre-processing was previously published26 and is available at https://github.com/gleb-shtengel/PeakSelector. The custom MATLAB code for iPALM data analysis is available at 10.5281/zenodo.8017632. The custom MATLAB code for MINFLUX analysis is available at https://github.com/PatapoutianLab/MINFLUX_Piezo_Analysis.",True,True,True dataset,10.1084_jem.20221654,doi10.1084_jem.20221654,"Data availability All data supporting the findings of this study are available within the paper or the supplementary materials and from the lead contact upon request. All original code used for epitope analysis has been deposited at Zenodo and is publicly available at https://doi.org/10.5281/zenodo.6360804. Further information and requests for reagents generated or used in this study are available upon request from the lead contact, Scheherazade Sadegh-Nasseri (ssadegh@jhmi.edu).",False,True,True dataset,10.3389/fpsyt.2020,doi10.3389/fpsyt.2020,"DATA AVAILABILITY STATEMENT The datasets presented in this article are not readily available because participants aremostlyminors andit contains sensitive data.Therefore, the dataset is available on reasonable requests as deemed by the principal investigator of the study. Requests to access the datasets should be directed to BP, bjorn.philips@psychology.su.se.",False,True,False dataset,10.1186_s12903-020-1021-0,doi10.1186_s12903-020-1021-0,Availability of data and materialsThe datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1101_gad.350461.123,doi10.1101_gad.350461.123,Data availabilitySource data are provided with this article as Supplemental Material. The chemical shift assignments can be accessed as BMRB IDs 51786 and 51787. Additional data are available from the corresponding author on request.,True,True,False dataset,10.1371_journal.pmed.1004343,doi10.1371_journal.pmed.1004343,"Data Availability Statement: The data underlying the results presented in the study are available from NHS England's Data Access Request Service https://dataaccessrequest.hscic.gov.uk/. HES data are managed and released by NHS Digital. The specific extract provided to the research team can only be used for the stated purpose of the study and for the length of time necessary to conduct the study. The extract cannot be shared outside of the research team or for any other purpose according to the legally binding terms under which they were released. Please see our privacy notice for further information on the purpose and legal basis of our use of these data: https://digital.nhs.uk/data-and-information/data-tools-and-services/data-services/hospital-episode-statistics. Access to HES data is available by direct application to NHS Digital and is available to anyone who has a legal basis for accessing these data, meets the requirements for safe and secure use of these data and intends to use these data for demonstrable benefit to health and social care in the UK. A full HES data dictionary, information of how to apply and the costs associated with data applications are available publicly via the NHS digital website: https://digital.nhs.uk. All diagnostic and procedure codes used to define specific study outcomes are provided in the supplementary online material released at time of publication. Aggregated data of the age, sex and deprivation specific post MI absolute risk of new onset disease (as presented in heat maps (Fig 5)) are available to explore freely via: https://multimorbidity-research-leeds.github.io/research-resources Anyone wishing to use these aggregate data to generate their own graphical summaries may do so providing full reference is given to this publication.",False,True,True dataset,10.1371_journal.pbio.3001585,doi10.1371_journal.pbio.3001585,"Data Availability Statement All data, code, and the model derivation have been uploaded as main or supplemental files in this submission, or are available on Zenodo (https://zenodo.org/record/5519935).",False,True,False dataset,10.1088_1361-6552_acfebd,doi10.1088_1361-6552_acfebd,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1088_2515-7655_acdd9c,doi10.1088_2515-7655_acdd9c,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://doi.org/10.5281/zenodo.8022111 [95].,False,True,False dataset,10.1371_journal.ppat.1012128,doi10.1371_journal.ppat.1012128,"Data Availability Statement: Some of the data underlying the results presented in the study are parts of the degree theses for Jineui Kim and Chia-Ming Su, and their theses have been deposited to the University of Illinois Urbana-Champaign. The thesis for JK is fully accessible at https://www.ideals.illinois.edu/items/116355. The thesis for CMS contains some additional data unrelated to the current study, which be published in peer-reviewed journals. Once all chapters of the thesis are published, the entire thesis will fully be available without restriction. The University will release the entire thesis after August 2025 regardless of its publication. The CMS thesis is accessible at https://www.ideals.illinois.edu/items/128551.",False,True,False dataset,10.1103_physrevresearch.4.033101,doi10.1103_physrevresearch.4.033101,Data availability statement No new data were created or analysed in this study.,False,True,False dataset,10.1186_s12889-023-15561-7,doi10.1186_s12889-023-15561-7,"Data Availability The genetic variable information of single nucleotide polymorphisms (SNPs) was obtained from the IEU GWAS database (https://gwas.mrcieu.ac.uk/datasets/), a publicly available GWAS summary database.",False,True,False dataset,10.1371_journal.pgph.0002821,doi10.1371_journal.pgph.0002821,"Data Availability Statement: The data analysed in this study is available upon request only. Indeed, de-identified data cannot be publicly shared, as our study involves sensitive data on human participants, and could be indirectly identifying based on multiple patient characteristics. Individual data requests may be sent to the CorC (secr-CORC@pasteur.fr).",False,True,False dataset,10.1371_journal.pone.0301207,doi10.1371_journal.pone.0301207,Data Availability Statement: All data are available from the below links: Data base: site: ans.gov.br/images/stories/Materiais_para_pesquisa/Perfil_setor/sala-de-situacao.html and BI where the women by age were selected: ans.gov.br/images/stories/Materiais_para_pesquisa/Perfil_setor/sala-de-situacao.html and Microsoft Power BI.,False,True,False dataset,10.1186_s12909-023-04345-7,doi10.1186_s12909-023-04345-7,Availability of data and materials The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1093_nar_gkad460,doi10.1093_nar_gkad460,Data AvailabilityAll raw sequencing data generated for this project are submitted to the SRA database under BioProject accession number PRJNA785663.,True,True,False dataset,10.1371_journal.pmed.1003088,doi10.1371_journal.pmed.1003088,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1155_2021_7179632,doi10.1155_2021_7179632,Data AvailabilityThe data used to support the findings of this study are available from the corresponding author upon request.,True,True,False dataset,10.1038_s41597-022-01645-3,doi10.1038_s41597-022-01645-3,Code availability Code associated with this manuscript can be found at OSF70.,False,False,True dataset,10.1073_pnas.2300203120,doi10.1073_pnas.2300203120,"Data, Materials, and Software Availability Seeds of the platz1 mutant have been deposited in GRIN-global (PI 702421) (39). All other data used in this study are included in the article and/or SI Appendix.",False,True,True dataset,10.1371_journal.pone.0300534,doi10.1371_journal.pone.0300534,Data Availability Statement: The novel networks proposed in the manuscript are theoretical. There are no data.,False,True,True dataset,10.1371_journal.pntd.0012056,doi10.1371_journal.pntd.0012056,Data Availability Statement: All relevant data are within the paper and its supporting information files.,False,True,False dataset,10.1371_journal.ppat.1010767,doi10.1371_journal.ppat.1010767,Data Availability Statement All relevant data are within the manuscript and its Supporting information files.,False,True,True dataset,10,doi10,Data Availability Statement: Not applicable.,False,True,False dataset,10,doi10,DATA AVAILABILITY UK Biobank data are freely available for research purposes by application (https:// www.ukbiobank.ac.uk/enable-your-research/register). Phecode-based outcomes developed for the current study will be returned to the UK Biobank for future research use within 6 months of publication.,False,True,False dataset,10.1371_journal.pgph.0001427,doi10.1371_journal.pgph.0001427,"Data Availability Statement We used anonymised data from the 2016 Australian Census obtained from the Australian Bureau of Statistics (ABS) and the Australian Curriculum and Assessment and Reporting Authority (ACARA). These datasets can be obtained publicly, with the exception of the work travel data which can be obtained from the ABS on request. It should be noted that some of the data needs to be processed using the TableBuilder: https://www.abs.gov.au/websitedbs/censushome.nsf/home/tablebuilder. The actual incidence data are available from the health departments across Australia (state, territories, and national), and at: https://www.covid19data.com.au/. Other source and supplementary data are available at Zenodo (https://doi.org/10.5281/zenodo.7325756). The source code of AMTraC-19 is also available at Zenodo (https://doi.org/10.5281/zenodo.7325675).",False,True,True dataset,10.1038_s41586-023-05895-y,doi10.1038_s41586-023-05895-y,"Data availability PacBio HiFi and ONT data have been deposited into NCBI SRA under the following BioProject IDs: PRJNA850430, PRJNA731524, PRJNA551670, PRJNA540705 and PRJEB36100. PacBio HiFi data for CHM1 are available under the following SRA accessions: SRX10759865 and SRX10759866. Sequencing data for Clint PTR are available on NCBI SRA under the BioProject PRJNA659034. The T2T-CHM13 v1.1 assembly can be found on NCBI (GCA_009914755.3). Cell lines obtained from the NIGMS Human Genetic Cell Repository at the Coriell Institute for Medical Research are listed in Supplementary Table 1. Assemblies of HPRC samples are available on NCBI under the BioProject PRJNA730822. All additional assemblies used in this work (Clint PTR, CHM1, HG00514, NA12878 and HG03125), variant calls, assembly alignments, and other annotation data used in analysis are available on Zenodo (10.5281/zenodo.6792653)71.",False,True,True dataset,10.3390_fluids7050173,doi10.3390_fluids7050173,Data Availability Statement: Data files from simulations will be made available by the authors upon request.,False,True,False dataset,10.1038_s41467-019-13914-8,doi10.1038_s41467-019-13914-8,"Data availability The source data underlying Figs. 1c–e, h–j, l, m, 2a, b, d, f, g, 3b, e, 4a–c, e–k, 5a, d–g, 6a–f, h, k, l, 7b–f, h–k, m, 8a–f and Supplementary Figs. 1a–d, 2a, b, d, 3a, b, d, 4a, b, d, 5a, b, d, f, h, i, 6a–p, 7a–e, 8a–j, 9a, c–g, 10a–d, f, h, 11a–d are provided as a Source Data file. Other datasets generated and/or analyzed in the current study are available from the corresponding author upon reasonable request.",False,True,False dataset,10.1016_j.xcrm.2023.101042,doi10.1016_j.xcrm.2023.101042,Data and code availabilityStandardized WES dataset has been deposited on the dbGaP repository. dbGaP: phs003268.v1.p1.This paper does not report original code.Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.,True,True,True dataset,10.1371_journal.pone.0236717,doi10.1371_journal.pone.0236717,Data Availability Statement The genotype file is available from the Dryad Digital Repository (https://doi.org/10.5061/dryad.1c2d3).,False,True,False dataset,10.1007_s00520-023-07818-z,doi10.1007_s00520-023-07818-z,Data availabilityAll raw data is held securely by the research team and access can be requested if required.,True,True,False dataset,10.1038_s41467-023-37876-0,doi10.1038_s41467-023-37876-0,"Data availability FlyBi binary interaction data and all data described in this study are provided without restrictions. These data are provided as Supplementary file 5 and are also available as a table and as a downloadable data file at the FlyBi project webpage ([https://flybi.hms.harvard.edu/]). In addition, these data have been integrated with other datasets at IntAct ([https://www.ebi.ac.uk/intact/])44 and in the Molecular Interaction Search Tool (MIST; [https://fgrtools.hms.harvard.edu/MIST/])33. MAPPIT data is provided as Supplementary Data 6. RNAi data for the autophagy-related network is provided as Supplementary Data 8. Plasmid clones and associated information are available from both the Drosophila Genomics Resource Center (University of Indiana, Bloomington, IN) and the DNASU plasmid repository (Arizona State University, Phoenix, AZ). ORFs in the Gateway donor vector were end-read sequenced (see above, “Generation of a large-scale ORF clone resource”). Sequence data is available at GenBank and at the FlyBi project website (see Genbank Accession columns in the table at [https://flybi.hms.harvard.edu/results.php]). For a subset of 954 ORFs, the end-reads sequence spanned the full ORF. This sequence data is available at NCBI (Project Accession ID PRJNA349744) and a list of these ORFs, along with NCBI IDs, is available at the FlyBi project website (see [https://flybi.hms.harvard.edu/clones.php]). Interaction data was deposited at EBI IntAct (all Drosophila PPIs viewable at [https://www.ebi.ac.uk/intact/query/pubid:IM-28761]) and DroRI PPIs are available at MIST (see DroRI tab at [https://fgrtools.hms.harvard.edu/MIST/]). ChIPseq data is available at NCBI GEO (Accession ID GSE220887). Source data are provided with this paper.",False,True,True dataset,10.1186_s12913-021-07120-w,doi10.1186_s12913-021-07120-w,Availability of data and materialsThe authors have made available all data and materials in the Supplemental file.,True,True,False dataset,10.1088_1361-6641_acf608,doi10.1088_1361-6641_acf608,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1073_pnas.2219624120,doi10.1073_pnas.2219624120,"Data, Materials, and Software Availability The coordinates and the structure factors for the reported crystal structures have been deposited in the Protein Data Bank (PDB) under accession codes 8DIZ (54), 8DJ0 (55), and 8DJ1 (56) for NaVAbΔ28 I119T, L123T, and V126T, respectively. All study data are included in the article and/or SI Appendix.",False,True,True dataset,10.1186_s12920-023-01452-8,doi10.1186_s12920-023-01452-8,Availability of data and materials The datasets generated and analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1186_s12913-021-06257-y,doi10.1186_s12913-021-06257-y,Availability of data and materialsThe data sets used and/or analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pstr.0000094,doi10.1371_journal.pstr.0000094,Data Availability Statement: All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1093_nar_gkad501,doi10.1093_nar_gkad501,Data AvailabilityThe spacer sequences and accompanying statistics that are discussed in this paper are provided in Supplementary File 1. The original FASTQ files from the NGS experiments have been uploaded to the SRA database [accession # PRJNA972507]. The raw data from this study are available from the corresponding author upon request.Custom python scripts are deposited at Figshare: https://figshare.com/articles/software/kenneyc_etal_code_2023/22970996.,False,True,True dataset,10.1038_s41598-020-61054-7,doi10.1038_s41598-020-61054-7,Data availability Data will be made available by the corresponding author upon request.,False,True,False dataset,10.1088_1741-2552_acfe9c,doi10.1088_1741-2552_acfe9c,Data availability statementThe data cannot be made publicly available upon publication because they contain sensitive personal information. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pgen.1010503,doi10.1371_journal.pgen.1010503,Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1088_2634-4386_acfbf3,doi10.1088_2634-4386_acfbf3,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.7554_elife.85814,doi10.7554_elife.85814,Data availabilitySequencing data have been deposited in GEO under accession code GSE219105.,True,True,True dataset,10.1002_advs.202300445,doi10.1002_advs.202300445,"Data Availability StatementThe data that support the findings of this study are openly available in Gene expression Ominibus (GEO) at https://www.ncbi.nlm.nih.gov/geo, reference number 152431 and Genome Sequence Archieve (GSA) at https://ngdc.cncb.ac.cn/gsa‐human, reference number HRA000372.",False,True,False dataset,10.1088_1741-2552_acfbfa,doi10.1088_1741-2552_acfbfa,"Data availability statementThe datasets generated for this study are available on request to the corresponding author, while the model source code will be made available from the ModelDB (https://senselab.med.yale.edu/modeldb/) upon article publication.",False,True,True dataset,10.1088_1361-648x_acfc8f,doi10.1088_1361-648x_acfc8f,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pstr.0000049,doi10.1371_journal.pstr.0000049,Data Availability Statement All underlying data is available from https://cloud.univ-grenoble-alpes.fr/s/yDojHCrPHBdKY8D.,False,True,False dataset,10.1099_mgen.0.001019,doi10.1099_mgen.0.001019,"Data statement: All supporting data, code and protocols have been provided within the article or through supplementary data files.Three supplementary files are available with the online version of this article.",True,True,True dataset,10.1126_sciimmunol.ade2860,doi10.1126_sciimmunol.ade2860,"Data and materials availability: The materials and reagents used are commercially available and nonproprietary, with the exception of the gene-KO or patient-specific cell lines generated by this study. The cell lines generated by this study are available from S.-Y.Z. and J.-L.C upon request under MTAs from the Rockefeller University and the Imagine Institute. The RNA sequencing data generated by this study are available in the NCBI database under the NCBI-SRA project PRJNA937264. All other data needed to support the conclusions of the paper are in the paper or the supplementary materials.",True,True,True dataset,10.1093_gbe_evad099,doi10.1093_gbe_evad099,Data AvailabilityThe Nextflow pipeline is available from https://github.com/4ment/gradient-benchmark. The versions of the programs used in this study are provided in table 1.,False,True,True dataset,10.1371_journal.pone.0248476,doi10.1371_journal.pone.0248476,"Data Availability Statement Individual level data cannot be shared publicly because of identifiability concerns that could occur with individual level electronic medical record data. We have provided aggregate data in S1 Table. Hospital discharge data are housed at the Arizona Department of Health Services, and may be provided for future analyses upon approval of a Human Subjects Research Board protocol at the discretion of the Arizona Department of Health Services. Researchers wishing to reproduce or build on this study will need to submit a data request to the Arizona Department of Health Services to be approved: https://www.azdhs.gov/documents/director/administrative-counsel-rules/HSRB_NewProductSubmission.pdf.",False,True,False dataset,10.1242_dev.201085,doi10.1242_dev.201085,Data availability All relevant data can be found within the article and its supplementary information.,False,True,False dataset,10.1371_journal.pbio.3002375,doi10.1371_journal.pbio.3002375,"Data Availability Statement: Data and code to reproduce the main findings of this study can be downloaded from Open Science Framework (OSF, https://doi.org/10.17605/OSF.IO/GDJWH).",False,True,True dataset,10.1088_2631-8695_ad1216,doi10.1088_2631-8695_ad1216,"Data availability statementThe data presented in the work is a part of research work carried out jointly. However. upon reasonable request, the data can be provided from the authors. The data that support the findings of this study are available upon reasonable request from the authors.",True,True,False dataset,10.1371_journal.pone.0286008,doi10.1371_journal.pone.0286008,"Data Availability Statement In order to protect subjects’ confidentiality and privacy, data are only available on request. Interested researchers may contact the Ethics Committee of the Faculty of Sport, Porto University (cefade@fade.up.pt).",False,True,False dataset,10.1007_s00285-023-01885-w,doi10.1007_s00285-023-01885-w,Data and CodeTime series simulations were performed numerically with MATLAB. The analysis for the reproduction number was computed with Mathematica. The parameter sensitivity was computed using the statistical package in Matlab. The codes can be accessed upon request.,False,True,True dataset,10.1038_s41594-023-00948-2,doi10.1038_s41594-023-00948-2,"Data availability The atomic coordinates and cryo-EM maps from this study are deposited in the Protein Data Bank (PDB) and Electron Microscopy Data Bank (EMDB) under PDB codes 8FVR (EC) and 8FVW (EC + ppGpp), and EMDB entries EMD-29491 (EC) and EMD-29494 (EC + ppGpp), respectively. All other data are available in the manuscript or supplementary materials. Requests for strains or plasmids will be fulfilled by the lead contact author (E.N.) upon request.",True,True,True dataset,10.1186_s12920-023-01484-0,doi10.1186_s12920-023-01484-0,"Data availability The datasets generated and/or analyzed during the current study are not publicly available due Mashhad University of Medical Sciences research council rules, but are available from the corresponding author on reasonable request.",False,True,False dataset,10.1088_1748-9326_ad0dda,doi10.1088_1748-9326_ad0dda,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pmed.1004146,doi10.1371_journal.pmed.1004146,Data Availability Statement All 42 files are available from the Dataverse Repository database (accession number(s) https://doi.org/10.7910/DVN/PMV0TG) https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/PMV0TG.,False,True,False dataset,10.1088_1361-6501_ad0999,doi10.1088_1361-6501_ad0999,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://csegroups.case.edu/bearingdatacenter/pages/download-data-file/ https://github.com/ClarkGableWang/JNU-Bearing-Dataset.,False,True,True dataset,10.1088_1361-6560_ad0357,doi10.1088_1361-6560_ad0357,Data availability statementThe data cannot be made publicly available upon publication because they contain sensitive personal information. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1192_j.eurpsy.2023.2418,doi10.1192_j.eurpsy.2023.2418,Data availability statement We believe that knowledge sharing increases the quantity and quality of scientific results. Sharing of relevant data will be discussed within the study group upon reasonable request.,False,True,False dataset,10.1371_journal.pmed.1004341,doi10.1371_journal.pmed.1004341,"Data Availability Statement: All mortality data used in our study were obtained from a collaborative research network under a data sharing agreement and the authors are not permitted to directly share the third-party raw data used in the analyses. For information on data access, readers are asked to contact Dr Sharon Harrison (sharon.harrison@monash.edu) for information on each country’s data providers. Annual gridded population was obtained from the Global Carbon Project (https://www.cger.nies.go.jp/gcp/population-and-gdp.html). Historical information on the temporal dynamics of cyclone events across the globe was collected from the IBTrACS data (https://www.ncei.noaa.gov/products/international-best-track-archive).",False,True,False dataset,10.1088_1367-2630_ad091e,doi10.1088_1367-2630_ad091e,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pone.0258711,doi10.1371_journal.pone.0258711,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1002_nop2.1112,doi10.1002_nop2.1112,DATA AVAILABILITY STATEMENTResearchers allow this article to be used by anyone interested. All data generated during this study are included in this published article.,False,True,False dataset,10.1371_journal.pone.0264346,doi10.1371_journal.pone.0264346,Data Availability Statement The model and sample codes are freely available at the GitHub repository (http://github.com/sangsoopark1739/pedaling_DC_OpenSim).,False,True,True dataset,10.1088_1361-6463_ad098b,doi10.1088_1361-6463_ad098b,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s41593-023-01382-9,doi10.1038_s41593-023-01382-9,"Data availabilityThe MNIST65, CIFAR-10 (ref. 66) and Tiny ImageNet67 datasets (used in Supplementary Fig. 5) are publicly available from http://yann.lecun.com/exdb/mnist/, https://www.cs.toronto.edu/~kriz/cifar.html and https://www.kaggle.com/c/tiny-imagenet, respectively.Code availabilityCode reproducing the results is available at GitHub (https://github.com/neuroai/Go-CLS_v2) and archived at Zenodo (10.5281/zenodo.7941122).",False,True,True dataset,10.1038_s41467-020-14670-w,doi10.1038_s41467-020-14670-w,"Data availabilityThe RNA-seq and single-cell RNA seq raw reads have been deposited in the SRA database under accession PRJNA556211. The VRC01 KI mouse immunoglobulin VDJ sequence reads have been deposited in the SRA database under accession PRJNA603102. Source data for Figs. 1B, 1C, 1F–I, 2A–D, 4B–I, 5B–D, 5E, 6A–F, and Supplementary Figs. 1A–C, 1E–H. 2A–D, and 6E are provided as a source data file.",False,True,True dataset,10.1371_journal.pone.0287750,doi10.1371_journal.pone.0287750,"Data Availability Statement All relevant data are within the manuscript and its Supporting Information files. the GitHub in .csv format, and its URL is: https://github.com/XAUT-WangLin/Summary-table-of-evaluation-index.",False,True,True dataset,10.1073_pnas.2217096120,doi10.1073_pnas.2217096120,"Data, Materials, and Software Availability X-ray structure data have been deposited in Protein Data Bank (8E0P, 8E0R, and 8E0W) for eMBP-APCDD1, APCDD1 crystal-form I and form II, respectively (84–86).",False,True,True dataset,10.1371_journal.pbio.3000532,doi10.1371_journal.pbio.3000532,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1128_mSphere.00700-18,doi10.1128_mSphere.00700-18,Accession number(s). The final RNA-Seq data have been deposited in the Gene Expression Omnibus (GEO) database under accession no. GSE113880.,True,True,False dataset,10.1088_1361-6528_acfd31,doi10.1088_1361-6528_acfd31,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pone.0198449,doi10.1371_journal.pone.0198449,"Data Availability Statement Data are from the NASBOD study whose authors may be contacted at www.ncdrc.info. This study was an attempt to estimate 167 mortality causes in Iran form 1990 to 2015 by 2 sex and 19 age groups. The cirrhosis is one of the 167 causes in the NASBOD. The comprehensive data used in this research was gathered from Ministry of Health and Medical Education of Iran(MOHME); therefore, we are not permitted to publish the data set as it belongs to MOHME. For access to the NASBOD study data sets, interested and qualified researchers may contact Ministry of Health and Medical Education of Iran. The list of all data sets are mentioned in the paper NASBOD 2013: Design, Definitions, and Metrics, Archives of Iranian Medicine. 2014. 17(1). 7-15. DOI: 0141701/AIM.004. The authors of this paper had no special access privileges to the data sets.",False,True,False dataset,10.1371_journal.ppat.1012129,doi10.1371_journal.ppat.1012129,Data Availability Statement: All relevant data are within the manuscript and its Supporting information files.,False,True,True dataset,10.1016_j.jbc.2023.105046,doi10.1016_j.jbc.2023.105046,"Data availabilityAll data supporting the findings of this study are available within this manuscript. Any further information and requests for resources and reagents should be directed to and will be fulfilled by the Lead Contact, Peter Tsvetkov (ptsvetko@broadinstitute.org).",False,True,False dataset,10.7554_elife.86130,doi10.7554_elife.86130,Data availabilitySequencing data have been deposited in GEO.The following datasets were generated:WangJRattnerANathansJ2022Bacterial meningitis in the early postnatal mouse studied at single-cell resolutionNCBI Gene Expression OmnibusGSE221678WangJRattnerANathansJ2022snRNAseq_JW19_meninges_control_RP1NCBI Gene Expression OmnibusGSM6892910WangJRattnerANathansJ2022snRNAseq_JW20_meninges_control_RP2NCBI Gene Expression OmnibusGSM6892911WangJRattnerANathansJ2022snRNAseq_JW21_meninges_infected_RP1NCBI Gene Expression OmnibusGSM6892912WangJRattnerANathansJ2022snRNAseq_JW22_meninges_infected_RP2NCBI Gene Expression OmnibusGSM6892913WangJRattnerANathansJ2022snRNAseq_JW23_meninges_infected_RP3NCBI Gene Expression OmnibusGSM6892914,False,True,False dataset,10.1088_1361-6463_acfb1a,doi10.1088_1361-6463_acfb1a,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.3390_math10234485,doi10.3390_math10234485,Data Availability Statement: Not applicable.,False,True,False dataset,10.3390_ijms24010865,doi10.3390_ijms24010865,Data Availability Statement- All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. Additional data related to this paper may be requested from the authors.,True,True,False dataset,10.2196_44326,doi10.2196_44326,Data Availability The data sets generated and analyzed during this study are available from the corresponding author on request.,False,True,False dataset,10.1371_journal.pone.0238029,doi10.1371_journal.pone.0238029,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1038_s41467-023-38623-1,doi10.1038_s41467-023-38623-1,"Data availabilityAll FASTQ files generated in this study have been deposited in the SRA database under accession code “PRJNA966800”. The processed data generated in this study are provided in the Supplementary Information/Source Data file. The structures used in this study can be found under the accession codes “4E8M”, “5A2Q” and “6AHR”. Source data are provided with this paper.Code availabilityAll source codes used in this study are available at a GitHub repository: https://github.com/pylelab/Tb-seq.",False,True,True dataset,10.1371_journal.pone.0284821,doi10.1371_journal.pone.0284821,Data Availability Statement The data is openly available for all at: https://mics.unicef.org/surveys.,False,True,False dataset,10.1371_journal.pgph.0002740,doi10.1371_journal.pgph.0002740,Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0234219,doi10.1371_journal.pone.0234219,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1371_journal.pone.0229417,doi10.1371_journal.pone.0229417,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pstr.0000081,doi10.1371_journal.pstr.0000081,Data Availability Statement: The methods used to implement workshop activities are described in this paper. Qualitative data from focus group discussions and notes from workshops are not publicly available due to institutional restrictions on the sharing data that includes potentially identifying information. The Institute for Sustainable Futures Ethics Committee may be contacted with inquiries about the data at ISF-Ethics@uts.edu.au.,False,True,False dataset,10.1371_journal.pntd.0011919,doi10.1371_journal.pntd.0011919,Data Availability Statement: Base layers for each map are publicly available from the U.S. census (https://www.census.gov/geographies/mapping-files/time-series/geo/carto-boundary-file.html). Environmental spatial data used in environmental niche modeling were collected from EarthExplorer (http://earthexplorer.usgs.gov) and EarthData (http://earthdata.nasa.gov/). Tick encounter data can be accessed at Dryad (https://doi.org/10.5061/dryad.v41ns1s3n).,False,True,False dataset,10.7554_elife.87146,doi10.7554_elife.87146,"Data availabilityThe sequencing data reported in this paper have been deposited in the NCBI Gene expression omnibus https://www.ncbi.nlm.nih.gov/geo/ (accession code, GSE240200).",False,True,False dataset,10,doi10,"Data availability The RNA-seq data for this study is available from the Gene Expression Omnibus (GEO; GSE133278. The metabolic and other gene expression data generated in this study are provided in the Supplementary Information or Source Data files, both provided with this paper. The raw data from human participants (beyond what is shown) are protected and not available due to data privacy considerations. Source data are provided with this paper.",False,True,False dataset,10.1038_s41467-022-35233-1,doi10.1038_s41467-022-35233-1,"Data availability All datasets used in this work are publicly available from the fol- lowing sources: The STARmap PLUS data was obtained from Zeng et al.4 and is available at https://singlecell.broadinstitute.org/ single_cell/study/SCP1375/integrative-in-situ-mapping-of-single- cell-transcriptional-states-and-tissue-histopathology-in-an- alzheimer-disease-model as well as on Zenodo at: https://doi.org/ 10.5281/zenodo.733209177. The reference gene expression used for cell type classification of the predicted gene expression is available from the Allen Brain Map53: https://portal.brain-map. org/atlases-and-data/rnaseq/mouse-whole-cortex-and- hippocampus-10x. The 10x Visium dataset is available at https:// www.10xgenomics.com/resources/datasets/multiomic- integration-neuroscience-application-note-visium-for-ffpe-plus- immunofluorescence-alzheimers-disease-mouse-model-brain- coronal-sections-from-one-hemisphere-over-a-time-course-1- standard. A Source Data file is provided and contains statistics of differential expression reported in Fig. 5b and Supplementary Fig. 29, including p-values and log fold changes. Source data are provided with this paper. Code availability Our code and a list of required open-source software packages are available at https://github.com/uhlerlab/STACI and on Zenodo: https://zenodo.org/record/7300119#.Y2k0VS-B35g78.",False,True,True dataset,10.1016_j.ejca.2022.10.026,doi10.1016_j.ejca.2022.10.026,"Data sharing The study protocol and aggregated and anonymised data that underlie the results reported in this article will be available immediately following publication with no end date to researchers who provide a methodologically- sound proposal to achieve aims related to the approved proposal. Proposals should be submitted to www.eortc. be/services/forms/erp/request.aspx. To gain access, data requestors will need to sign a data access agreement.",False,True,False dataset,10.1371_journal.ppat.1012094,doi10.1371_journal.ppat.1012094,Data Availability Statement: All data are available in the article and supporting information.,False,True,False dataset,10.1371_journal.pone.0295062,doi10.1371_journal.pone.0295062,Data Availability Statement: All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pone.0240029,doi10.1371_journal.pone.0240029,Data Availability Statement All relevant data are uploaded to the CIMMYT repository and publicly accessible via the following URL: http://hdl.handle.net/11529/10714 (Hdl/11529/10714).,False,True,False dataset,10.1371_journal.pdig.0000181,doi10.1371_journal.pdig.0000181,Data Availability Statement: All relevant data are within the manuscript.,False,True,False dataset,10,doi10,"Availability of data and materials UMG detection code is available at https://github.com/gersteinlab/UMG [51] and https://doi.org/10.5281/zenodo. 5500467 [52]. Results in the paper are in whole or part based upon data generated by the TCGA Research Network: https://www.cancer.gov/tcga. MC3 high-quality somatic mutation dataset is obtained from [53]. STRING v11 [54] and HumanNet v2 [55] functional network (FN) are respectively downloaded from https://string-db.org/ and https://www. inetbio.org/humannet. Gene expression data corrected for batch effect and study-specific bias are downloaded from RNAseqDB [56] at https://github.com/mskcc/RNAseqDB. Variant annotations are based on RefSeq hg19 provided via ANNOVAR 2018b [57], and gene length values are provided via the bioMart Bioconductor package [58]. Genetic dependency data from the Cancer Dependency Map [30] (for both CRISPR and RNAi experiments) are downloaded from https://depmap.org/portal/download/, MutSig2CV [45] data across cancer types from http://gdac.broadinstitute.org, COSMIC v90 census gene list from https://cancer.sanger.ac.uk/cosmic, and CancerMine v24 [59] gene lists from http:// bionlp.bcgsc.ca/cancermine.",False,True,True dataset,10.1186_s12879-023-08392-9,doi10.1186_s12879-023-08392-9,Availability of data and materialsThe datasets generated and/or analysed during the current study are not publicly available due to ethical and data access agreements with individual country ethical boards but are available from the corresponding author on reasonable request.,False,True,False dataset,10.1038_s41467-023-38573-8,doi10.1038_s41467-023-38573-8,"Data availability The data that support this study are available in the article and its Supplementary files or from the corresponding authors upon request. All structural data have been deposited in the Protein Data Bank (https://www.rcsb.org), with PDB codes: 7R7V7R7W, 7R7X, 7R7Y, 7R7Z, 7R80. Sequence data have been deposited in GenBank BankIt. The accession numbers for the C3 TCRαβ sequence are OQ858871 and OQ858872, the accession numbers for B57-specific TCRβs are OQ858873, OQ858874, OQ858875, OQ858876, OQ858877, and the accession numbers for B53-specific TCRβs are OQ858878, OQ858879, OQ858880, OQ858881.The source data underlying Figs. 1d–g, 2g, 4b, 4d–f, 6i, 7a, b, f are provided in the Source Data file. Source data are provided with this paper.",False,True,True dataset,10.1371_journal.pone.0212566,doi10.1371_journal.pone.0212566,Data Availability Statement All relevant data are within the paper and its Supporting Information Files.,False,True,False dataset,10.1038_s43016-022-00594-9,doi10.1038_s43016-022-00594-9,"Data availability The modelled estimates of individual food and nutrient intakes by population subgroup, country, region and globe in 1990 and 2018 are available for download from the GDD (https://www.globaldietarydatabase.org/). Survey-level information and original data download weblinks are also provided for all public surveys; survey-level microdata or stratum-level aggregate data are provided for direct download for all non-public surveys granted consent for public sharing by the data owner. The modelled dietary quality scores are available for download from (https://github.com/victoriaemiller/GDD-Diet-Quality).",False,True,True dataset,10.1371_journal.pbio.3000447,doi10.1371_journal.pbio.3000447,Data Availability Statement All relevant data are within the paper and its supporting information files.,False,True,False dataset,10.1038_s41586-023-06426-5,doi10.1038_s41586-023-06426-5,"Data availabilityIn terms of data processed or generated as part of this study, we provide per-population mtDNA heteroplasmic and homoplasmic allele frequencies and counts in UKB and AoU (Supplementary Tables 5 and 6), genetic association statistics for LD-independent lead SNPs and fine-mapped variants in UKB in addition to colocalization results (Supplementary Tables 2–4) and gene-based RVAS association statistics for genes at GWS for the Cauchy test (Supplementary Table 7). All GWAS sample sizes for each genetic ancestry group, meta-analysis and phenotype can be found in Supplementary Table 1. All GWAS summary statistics from UKB cross-ancestry meta-analyses (used here in discovery analyses) have been deposited in the GWAS Catalog (ID: GCP000614). Summary statistics containing all per-ancestry association statistics as well as cross-ancestry meta-analyses can be accessed through the Google Cloud Platform (bucket: gs://mito-wgs-public-2023). Full GWAS summary statistics from AoU (used here as a replication cohort) have been deposited in a workspace available on the AoU workbench (titled ‘Nuclear genetic control of mtDNA copy number and heteroplasmy in humans’; https://workbench.researchallofus.org/workspaces/aou-rw-3273c7f0/nucleargeneticcontrolofmtdnacopynumberandheteroplasmyinhumans/data). Individual-level data generated as part of UKB (mtCN and mtDNA variant calls) have been returned to UKB to enable utilization of the full individual-level data by the broader scientific community through the UKB data showcase. Individual-level data generated as part of AoU have been deposited in the same workspace containing summary statistics on the AoU Research Workbench. Please see our GitHub repository (https://github.com/rahulg603/mtSwirl) for more information on accessing these data. At the time of publication, access to the AoU workbench controlled tier is restricted to US-based academic institutions, government entities, health care institutions and non-profit organizations. Please also note that as of the time of publication, the only method to gain access to the AoU workspace containing the data generated here is to contact us to be added to the workspace. For information about access to the Researcher Workbench as a registered researcher, please visit https://www.researchallofus.org. In terms of external data used in this study, we leveraged GWAS summary statistics, and ancestry-specific LD-matrices, and a curated list of 29 common, high-quality disease phenotypes generated as part of the Pan UKBB project61. Paths for these summary statistics (https://pan.ukbb.broadinstitute.org/docs/per-phenotype-files) and LD-matrices (https://pan.ukbb.broadinstitute.org/docs/ld) can be found on the Pan UKBB project website (https://pan.ukbb.broadinstitute.org); these were accessed through the Google Cloud Platform as part of this study. UKB phenotype and whole-genome sequencing data can be accessed through the UKB Research Analysis Platform after completing a UKB access application (https://ukbiobank.dnanexus.com/landing). AoU phenotype and genotype data can be accessed through the Controlled Tier v6 on the AoU researcher workbench (https://workbench.researchallofus.org). gnomAD v.3.1.2 (https://gnomad.broadinstitute.org) WGS was accessed through a custom Terra workspace (titled ‘gnomad_subsampled_mitopipeline_head_to_head’). High-coverage WGS data from 1000G were accessed using the public ‘1000G-high-coverage-2019’ workspace in Terra. Published mtscATAC-seq data used for chrM:302 analysis can be obtained with dbGaP approval. Gene-sets for enrichment analyses can be obtained using COMPARTMENTS (https://compartments.jensenlab.org) and MitoCarta 2.0 (https://www.broadinstitute.org/files/shared/metabolism/mitocarta/human.mitocarta2.0.html) as described previously24. The GRCh37 and GRCh38 reference genomes as well as other standard reference data are available through the GATK resource bundle (https://gatk.broadinstitute.org/hc/en-us/articles/360035890811-Resource-bundle). Annotations for the baseline v.1.1 and BaselineLD v.2.2 models for S-LDSC as well certain other relevant reference data, including the HapMap3 SNP list, can be obtained from https://alkesgroup.broadinstitute.org/LDSCORE/. Known reference and polymorphic NUMTs were obtained from supplemental data as provided in published work51,85–87. Code availabilityWe release the full WDL pipelines and associated input files for mtDNA analysis from whole-genome sequencing data on GitHub (https://github.com/rahulg603/mtSwirl; 10.5281/zenodo.8067503). We also provide the code we used to run the pipeline on the UKB Research Analysis Platform, AoU and Terra; consolidate all data; perform mtDNA sample and variant QC; and run GWAS. See the Methods and the README in the GitHub repository for more information on how to use the pipeline. Several tools were used as part of mtSwirl, including GATK v.4.2.6.0 (https://gatk.broadinstitute.org/), samtools v.1.9 (https://github.com/samtools/samtools) and bcftools v.1.16 (https://github.com/samtools/bcftools), Haplochecker 0124 https://github.com/genepi/haplocheck), R v.3.1.1 (https://r-project.org), Hail v.0.2.84 (https://hail.is) and UCSC kent tools source v.430 (genome-source.soe.ucsc.edu/kent.git and https://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/). We used several published tools and scripts to perform downstream analysis of the mtDNA call-set in this study. All data wrangling, statistical analysis and figure generation was performed using Hail v.0.2.98 (https://hail.is), python v.3.7.10 (https://www.python.org) or R v.4.2.1 (https://r-project.org). Parallelization of tasks in UKB was performed using Hail Batch (in Hail v.0.2.98) (https://batch.hail.is) and in AoU using Cromwell v.77 (https://cromwell.readthedocs.io). GWAS was performed in UKB using SAIGE v.1.1.5 (https://saigegit.github.io). For scaling of UKB GWAS, a custom modification of the GWAS pipeline from the Pan UKBB pan-ancestry GWAS was implemented (https://github.com/atgu/ukbb_pan_ancestry). Linear regression GWAS was performed in AoU using Hail. We release the code used for GWAS on both UKB and AoU on GitHub (https://github.com/rahulg603/mtSwirl). mtDNA PCA was performed in R using the irlba v.2.3.5.1 package (https://cran.r-project.org/web/packages/irlba/index.html). Multinomial models were trained using the nnet v.7.3-17 package in R (https://cran.r-project.org/web/packages/nnet/index.html). Circos plots were made using the circlize package v.0.4.15 in R (https://jokergoo.github.io/circlize_book/book/). For analysis of chrM:302 in single-cell data, we used BedTools v.2.29.2 (https://bedtools.readthedocs.io). LD clumping was performed using Plink v.1.90 (https://www.cog-genomics.org/plink/). Fine-mapping was performed using FINEMAP-inf v.1.3 and SuSiE-inf v.1.2 (https://github.com/FinucaneLab/fine-mapping-inf). eQTL data were obtained from GTEx v.8 (https://gtexportal.org) and the eQTL catalogue release 4 (https://www.ebi.ac.uk/eqtl/). For replication analysis effect size comparisons, the deming v.1.4 package was used in R (https://cran.r-project.org/web/packages/deming/index.html). Heritability estimates and enrichment analyses were performed using stratified LD-score regression (https://github.com/bulik/ldsc). BLASTn v.2.13.0 was used as available from the NCBI (https://blast.ncbi.nlm.nih.gov/Blast.cgi). MUSCLE v.3.8.31 was used for protein sequence alignment (https://drive5.com/muscle/downloads_v3.htm).",False,True,True dataset,10.3390_sym14091793,doi10.3390_sym14091793,Data Availability Statement: Not applicable.,False,True,False dataset,10.1038_s41598-019-57366-y,doi10.1038_s41598-019-57366-y,Data availability The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.ppat.1008185,doi10.1371_journal.ppat.1008185,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1186_s40168-023-01556-4,doi10.1186_s40168-023-01556-4,Availability of data and materials The virome data were deposited in Science Data Bank (ScienceDB) Database under the DOI accession link http://www.doi.org/10.57760/sciencedb.06132.,False,True,False dataset,10.1088_1361-6595_acfe94,doi10.1088_1361-6595_acfe94,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: http://doi.org/10.5281/zenodo.7904634.,False,True,False dataset,10.1136_bmjgh-2021-005690,doi10.1136_bmjgh-2021-005690,Data availability statement Data are available upon request. All data relevant to the study are included in the article or uploaded as supplemental information.,False,True,False dataset,10.1038_s41467-020-20536-y,doi10.1038_s41467-020-20536-y,"Data availabilityZebra finch PacBio long reads, Hi-C data, parental short-read data, triobinned parental Canu assemblies: [https://vgp.github.io/genomeark/Taeniopygia_guttata/]. FALCON-Unzip contigs: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604785], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604786]. FALCON-Phase contigs: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604789], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604788]. FALCON-Phase scaffolds: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604793], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604794]. Cow PacBio long reads, Hi-C data, parental short-read data, triobinned parental canu assemblies: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA432857]. FALCON-Unzip contigs: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604814], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604813]. FALCON-Phase contigs: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604823], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604824]. FALCON-Phase scaffolds: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604826], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604827]. HG00733 PacBio long reads: [https://www.ncbi.nlm.nih.gov/sra/SRR7615963]. Hi-C data: [https://www.ncbi.nlm.nih.gov/sra/ERR1225141], [https://www.ncbi.nlm.nih.gov/sra/ERR1225146]. Parental short-read data: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA42573]. Triobinned parental canu assemblies: [https://obj.umiacs.umd.edu/marbl_publications/triobinning/h_sapiens_HG00733_dad.fasta], [https://obj.umiacs.umd.edu/marbl_publications/triobinning/h_sapiens_HG00733_mom.fasta]. FALCON-Unzip contigs: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604844], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604843]. FALCON-Phase contigs: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604845], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604846]. FALCON-Phase scaffolds: [https://www.ncbi.nlm.nih.gov/assembly/GCA_003634875.1] mHomSap3 PacBio long reads, Hi-C data, parental short-read data: [https://vgp.github.io/genomeark/Homo_sapiens/]. Triobinned parental canu assemblies: [https://genomeark.s3.amazonaws.com/species/Homo_sapiens/mHomSap3/assembly_nhgri_trio_1.6/intermediates/mHomSap3_mat_t1.fasta.gz], [https://genomeark.s3.amazonaws.com/species/Homo_sapiens/mHomSap3/assembly_nhgri_trio_1.6/intermediates/mHomSap3_pat_t1.fasta.gz]. FALCON-Unzip contigs: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604831], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604832]. FALCON-Phase contigs: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604836], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604835]. FALCON-Phase scaffolds: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604839], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA604838]. HG002 PacBio HiFi Reads: [https://www.ncbi.nlm.nih.gov/sra/SRR10382244], [https://www.ncbi.nlm.nih.gov/sra/SRR10382245], [https://www.ncbi.nlm.nih.gov/sra/SRR10382248], [https://www.ncbi.nlm.nih.gov/sra/SRR10382249]. Hi-C data: [https://github.com/human-pangenomics/HG002_Data_Freeze_v1.0]. Parental short-read data: [ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/HG004_NA24143_mother/NIST_Illumina_2x250bps/reads/], [ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/AshkenazimTrio/HG003_NA24149_father/NIST_Illumina_2x250bps/reads/]. IPA contigs:[https://www.ncbi.nlm.nih.gov/bioproject/PRJNA667512], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA667511]. FALCON-Phase contigs: [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA667513], [https://www.ncbi.nlm.nih.gov/bioproject/PRJNA667514].",True,True,True dataset,10.1038_s41467-022-31739-w,doi10.1038_s41467-022-31739-w,"Data availability All data analyzed in this paper can be downloaded in raw form from the original publication. Specifically, the DLPFC data is available in the “spatialLIBD package [http:// spatial.libd.org/spatialLIBD]. The processed Stereo-seq data from mouse olfactory bulb tissue is accessible at “SEDR analyses [https://github.com/JinmiaoChenLab/SEDR_ analyses]”. The chicken heart ST data is retrieved from GEO database under accession code “GSE149457 [https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE149457]”. The human breast cancer ST data can be obtained from the Zenodo dataset “4751624”. The sample we used is the same as the one demonstrated in the original paper (patient G-sample 1). Both chicken heart ST data and breast cancer ST data were sequenced by 10x Visium platform. The Slide-seq V2 can be accessed in Squidpy package71 or downloaded from “Broad Institute database [https://singlecell.broadinstitute.org/single_ cell/study/SCP815/highly-sensitive-spatial-transcriptomics-at-near-cellular-resolution- with-slide-seqv2]”. The seqFISH data can be accessed at the “Spatial Mouse Atlas [https:// marionilab.cruk.cam.ac.uk/SpatialMouseAtlas/]”. The Gene Ontology Consortium database can be accessed via “Gene Ontology Consortium [http://geneontology.org/]”. All other relevant data supporting the key findings of this study are available within the article and its Supplementary Information files or from the corresponding author upon reasonable request. Code availability The SpaceFlow package is implemented in Python with a dependency of Pytorch and is available on the GitHub repository “SpaceFlow [https://github.com/hongleir/ SpaceFlow]”. It is also deposited at Zenodo dataset “6668286”.",False,True,True dataset,10.1093_mnras_stab2591,doi10.1093_mnras_stab2591,"DATA AVA IL AB IL IT Y The X-shooter and SINFONI data underlying paper article are available in the ESO archive at https://archive.eso.org/ under ESO programme IDs 0102.A-0704(A) and 075.B-0636(B), respectively The HST data underlying this paper are available in the MAST archive at 10.17909/T9-9KG5-HG27. The reduced data underlying this paper will be shared on reasonable request to the corresponding author.",True,True,False dataset,10.7554_elife.79027,doi10.7554_elife.79027,"Data availability Source data and analysis code are available at the following Open Science Framework repository: https://osf.io/cs8d6/. Pre-processed eye-tracker data can be found here: https://osf.io/mrhk9/. Raw fMRI data is available at the following G-Node Infrastructure repository: https://gin.g-node.org/ipolti/ TTC_HPCF.git. The following datasets were generated: Author(s) Year Dataset title Dataset URL Database and Identifier Polti I, Nau M, Kaplan R, Wassenhove van, Doeller CF 2022 Time-To-Contact https://gin.g-node. org/ipolti/TTC_HPCF. git G-Node Infrastructure, 10.12751/g-node.pwn4qz Frey M, Nau M, Doeller CF 2021 DeepMReye https://osf.io/mrhk9/ Open Science Framework, 10.17605/OSF.IO/MRHK9 Polti I, Nau M 2022 Rapid encoding of task regularities in the human hippocampus guides sensorimotor timing https://osf.io/cs8d6/ Open Science Framework, cs8d6",False,True,True dataset,10.1371_journal.pdig.0000481,doi10.1371_journal.pdig.0000481,"Data Availability Statement: Deidentified individual participant data has been deposited in the Open Science Framework (OSF) repository (DOI: 10.17605/OSF.IO/RUQ4G). The dataset does not include the full demographic data collected to avoid indirect identification of participants. Following the guidance in Hrynaszkiewicz et al. (2010), we have included only 3 indirect identifiers: age, gender, and ethnicity. Two participants did not consent for their data to be made available for future studies, so that data has been removed from the available dataset.",False,True,False dataset,10.1186_s12891-023-06345-6,doi10.1186_s12891-023-06345-6,Availability of data and materials We propose a literature review and a meta-analysis. All data are from the articles listed in the summary tables included in the manuscript.,False,True,False dataset,10.1088_1361-665x_ad0394,doi10.1088_1361-665x_ad0394,Data availability statementNo new data were created or analysed in this study.,False,True,False dataset,10.1371_journal.pone.0217459,doi10.1371_journal.pone.0217459,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.2196_42978,doi10.2196_42978,Data Availability The data analyzed are not publicly available as they contain personal data but may be made available subject to an application and research proposal meeting the ethical and governance requirements of accessing the data.,False,True,False dataset,10,doi10,Data Availability Statement: The data that support the findings of this study are available on request from the corresponding author. The data are not publicly available due to privacy restrictions. The code used to perform the 3-compartment model fits has been made publicly available at https: //github.com/pcorrado/Dynamic-Cardiac-FDG-Kinetic-Modeling (accessed on 21 March 2021).,False,True,True dataset,10.1371_journal.pone.0240348,doi10.1371_journal.pone.0240348,Data Availability Statement All relevant data are available from GitHub (https://github.com/stccenter/COVID-19-Data/tree/master/US).,False,True,True dataset,10.1073_pnas.2305556120,doi10.1073_pnas.2305556120,"Data, Materials, and Software AvailabilitySource data for the single-molecule experiments are provided as Matlab “intervals” files that can be read and manipulated by the program imscroll (https://github.com/gellesbrandeis/CoSMoS_Analysis) (57). The source data are archived at doi: 10.5281/zenodo.7814499 (58).",False,True,True dataset,10.1371_journal.pgen.1010931,doi10.1371_journal.pgen.1010931,Data AvailabilityAll the genetic data analyzed in the manuscripts were either simulated or published. The software used in this manuscript is publicly available at: https://uqrmaie1.github.io/admixtools/.,False,True,True dataset,10.1186_s13058-023-01650-3,doi10.1186_s13058-023-01650-3,Availability of data and materials Data generated or analyzed during the study are available from the corresponding author by request.,False,True,False dataset,10.1371_journal.pone.0255359,doi10.1371_journal.pone.0255359,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0284699,doi10.1371_journal.pone.0284699,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pmed.1004362,doi10.1371_journal.pmed.1004362,Data Availability Statement: All relevant data are within the manuscript and its Supporting information files.,False,True,True dataset,10.1371_journal.pmed.1004211,doi10.1371_journal.pmed.1004211,"Data Availability Statement Data cannot be shared publicly because data privacy is subject to French, Cambodian, Senegalese and Malagasy regulations. Data are available from the Ethics Committee (contact via irb@pasteur.fr) for researchers who meet the criteria for access to confidential data.",False,True,False dataset,10.1186_s40249-021-00834-3,doi10.1186_s40249-021-00834-3,Availability of data and materialsAll original (de-identified) data and materials are available upon request from the corresponding author.,False,True,False dataset,10.1186_s12933-021-01314-6,doi10.1186_s12933-021-01314-6,Availability of data and materials Not applicable.,False,True,False dataset,10.1088_1402-4896_ad1561,doi10.1088_1402-4896_ad1561,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s41598-023-36120-5,doi10.1038_s41598-023-36120-5,"Data availabilityThe datasets generated and/or analysed during the current study belong to the Centre for Interdisciplinary Research in Animal Health (CIISA), Faculty of Veterinary Medicine, University of Lisbon. rDNA sequences obtained from all seven Mucor isolates were uploaded to the GenBank database, on 5 April 2022, with the accession numbers being provided in the Methods section. All data can be made available by requesting it from the Corresponding Author.",False,True,False dataset,10.1371_journal.pstr.0000095,doi10.1371_journal.pstr.0000095,"Data Availability Statement: The Fig 1 in the main text as well as in the supplementary information the Figure A in S1 Appendix and the Figures A to D in S2 Appendix are based on publicly available sources. The data is available through the references [144,151,154–158].",False,True,False dataset,10.1371_journal.pone.0198463,doi10.1371_journal.pone.0198463,Data Availability Statement All FASTQ files containing the sequencing data for unsorted (control) and sorted cells from the screens analyzed in this study have been deposited in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) with Study accession number SRP094861. All BAIMS pipeline software files are available through Github (https://github.com/RohatgiLab/BAIMS-Pipeline).,False,True,True dataset,10.1080_13814788.2023.2223928,doi10.1080_13814788.2023.2223928,Data availability statementThe datasets generated and/or analysed during the current study are not publicly available beacause participants did not give permission for recordings or transcripts to be released to other researchers but are available from the corresponding author at reasonable request.,False,True,True dataset,10.1093_molbev_msad085,doi10.1093_molbev_msad085,Data availability The computer code used for the analysis is available at https://github.com/jbloomlab/SARS2-mut-spectrum as a fully reproducible Snakemake pipeline (Mölder et al. 2021). Interactive versions of many of the plots rendered with Altair (VanderPlas et al. 2018) are at https://jbloomlab.github.io/SARS2-mut-spectrum/.,False,True,True dataset,10.1038_s41467-023-39751-4,doi10.1038_s41467-023-39751-4,"Data availabilityThe high-throughput sequencing data generated in this study have been deposited in the National Center for Biotechnology information Gene Expression Omnibus database under accession code GSE221679. The mass spectrometry proteomics data generated in this study have been deposited in the ProteomeXchange Consortium via the PRIDE71 partner repository under accession code PXD039991. The TAIR10 reference genome used in this study are available at The Arabidopsis Information Resource website [https://www.arabidopsis.org/download/index-auto.jsp%3Fdir%3D%252Fdownload_files%252FGenes%252FTAIR10_genome_release]. The Col-0 DNA methylation data used in this study for screenshots in Figs. 1b, 3c, 5e, 6e and Supplementary Fig. 6b are available in the National Center for Biotechnology information Gene Expression Omnibus database under accession code GSE124746. The DNA methylation data of the nrpe1 mutant and corresponding Col-0 control plants used in this study for Supplementary Fig. 8a–c and Supplementary Fig. 10b–d are available in the National Center for Biotechnology information Gene Expression Omnibus database under accession code GSE39901. The Col-0 DNA methylation data used in this study for Supplementary Fig. 12c are available in the National Center for Biotechnology information Gene Expression Omnibus database under accession code GSE54677. The Col-0 DNA methylation data used in this study for Supplementary Fig. 3a are available in the National Center for Biotechnology information Gene Expression Omnibus database under accession code GSE80302 . Source data are provided as a Source Data file. Source data are provided with this paper.Code availabilityThe customized code used in this study have been deposited in the GitHub repository [https://github.com/Zhenhuiz/MOM1_NC_2023].",False,True,True dataset,10.1126_science.adf4197,doi10.1126_science.adf4197,"Data and materials availability: For the core INO80 of the INO80-Hexasome complex (class 1, class 2 and class 3) and the core INO80 of the INO80-Nucleosome complex (class 1 and class 2), the coordinates are deposited in the Protein Data Bank with the accession codes 8ETS, 8ETU, 8ETW, 8EU9, and 8EUF; the cryo-EM density maps are deposited in the Electron Microscopy Data Bank (EMDB) with the accession codes EMD-28597, EMD-28599, EMD-28601, EMD-28609, and EMD-28613. For the hexasome of the INO80-Hexasome complex (class 1, class 2 and class 3) and the nucleosome of the INO80-Nucleosome complex (class 1 and class 2), the coordinates are deposited in the Protein Data Bank with the accession codes 8ETT, 8ETV, 8EU2, 8EUE, and 8EUJ; the cryo-EM density maps are deposited in the Electron Microscopy Data Bank (EMDB) with the accession codes EMD-28598, EMD-28600, EMD-28602, EMD-28612, and EMD-28614.",False,True,True dataset,10.7554_elife.80923,doi10.7554_elife.80923,Data availabilityAll data have been uploaded to Dryad.The following dataset was generated:TurnerGC2023Flexible specificity of memory in Drosophila depends on a comparison between choicesDryad Digital Repository10.5061/dryad.8931zcrtc,False,True,False dataset,10.1371_journal.pone.0283930,doi10.1371_journal.pone.0283930,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pone.0235872,doi10.1371_journal.pone.0235872,Data Availability Statement All relevant data are within the manuscript and its Supporting files.,False,True,True dataset,10.1371_journal.pone.0283477,doi10.1371_journal.pone.0283477,Data Availability• The minimal data set used to formulate the conclusions of this study is fully available from a permanent archive (DOI: 10.5281/zenodo.7523470). • The full protocol for radioligand binding experiments is publicly archived at dx.doi.org/10.17504/protocols.io.ewov1oxe2lr2/v1. • The full protocol for receptor internalization measurement experiments is publicly archived at dx.doi.org/10.17504/protocols.io.x54v9dz91g3e/v1. • The full protocol for Calcium fluorimetry experiments is publicly archived at dx.doi.org/10.17504/protocols.io.3byl4jdmjlo5/v1.,False,True,False dataset,10.1371_journal.pcbi.1009322,doi10.1371_journal.pcbi.1009322,Data Availability Statement Data Availability Statement. Data associated with all figures and tables presented in the manuscript is available online at: https://doi.org/10.6084/m9.figshare.8247860. Code availability. Code for reproducing the all figures and tables presented in the manuscript is available online at: https://doi.org/10.6084/m9.figshare.8247860.,False,True,True dataset,10.1186_s12913-021-06331-5,doi10.1186_s12913-021-06331-5,"Availability of data and materialsThe manuscript has data included as electronic supplementary material. More complete data is available from the authors upon request (contact: Marwân-al-Qays Bousmah. CEPED (UMR 196), Université de Paris, Campus Saint-Germain, 45 Rue des Saints-Pères, 75006 Paris, France. Tel.: + 33643521166. E-mail: marwan-al-qays.bousmah@ird.fr).",True,True,False dataset,10.1088_1361-6501_ad1311,doi10.1088_1361-6501_ad1311,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1088_1361-6420_ad0b26,doi10.1088_1361-6420_ad0b26,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pone.0239340,doi10.1371_journal.pone.0239340,Data Availability Statement All relevant data are within the manuscript.,False,True,False dataset,10.1186_s13054-023-04505-7,doi10.1186_s13054-023-04505-7,Availability of data and materials The datasets used and/or analyzed as well as R code used in the current study are available from the corresponding author upon reasonable request.,False,True,True dataset,10.1371_journal.pone.0286055,doi10.1371_journal.pone.0286055,"Data Availability Statement The data for this study is available and can be accessed by registering and logging into mics.unicef.org/surveys and downloading the dataset Ghana MICS6 SPSS Datasets.zip. The data for this study is contained in the child dataset labelled ch.sav and the following variables were used; HH1, HH2, BD2, BD3, BD4, BD5, BD6, BD7A, BD7A1, BD7B, BD7C, BD7C, BD7D1, BD7E, BD7E1, BD7X, BD8A, BD8A1, BD8B, BD8B1, BD8C, BD8D, BD8E, BD8F, BD8G, BD8H, BD8I, BD8J, BD8J1, BD8K, BD8L, BD8M, BD8N, BD8O, BD8P, BD8X, BD9, AN1, AN2, AN4, HH6, HH7, HL4, CAGE, CAGE_6, CAGE_11, CAGED, Stratum, melevel, caretakerdis, ethnicity, chweight, windex5 and PSU. The authors of this study had no special privileges in accessing these datasets which other interested researchers would not have.",False,True,True dataset,10.1001_jamaneurol.2023.2363,doi10.1001_jamaneurol.2023.2363,Data Sharing Statement: See Supplement 4.,False,True,False dataset,10.1016_j.str.2023.03.011,doi10.1016_j.str.2023.03.011,"Data and code availability The unprocessed tilt series used for the data analysis are available upon request. Representative tomograms for Ana, Mega, and Halo GVs have been deposited in the Electron Microscopy Data Bank under accession codes EMDB: EMD-29922, EMD-29925, EMD-29924, EMD-29923. Subtomogram averages for native Ana and AnaS GV shell have been deposited in EMDB under accession codes EMD-29921 and EMD-29916, respectively. The integrative model of Ana GvpA/GvpC has been deposited in the Protein Data Bank (PDB): 8GBS. The XLMS data have been deposited to the ProteomeXchange Consortium with the dataset identifier PXD038631. The code for ultrasound data collection and processing is available upon request.",False,True,True dataset,10.3390_ijms21144955,doi10.3390_ijms21144955,Availability of Data The raw sequences are available at [102] with the study accession number ERP122672.,False,True,False dataset,10.1371_journal.pcbi.1011043,doi10.1371_journal.pcbi.1011043,Data Availability Statement All data and code are open access and are available in a public repository.(https://github.com/TK-21st/AntennalLobeLLY22).,False,True,True dataset,10.1073_pnas.2304319120,doi10.1073_pnas.2304319120,"Data, Materials, and Software AvailabilityAll data supporting the findings of this study are available within the Article, the SI Appendix Data and the NCBI Sequence Read Archive (SRA) repository (PRJNA902911) (83). All study data are included in the article and/or SI Appendix. Previously published data were used for this work (72).",True,True,True dataset,10.1371_journal.pone.0231405,doi10.1371_journal.pone.0231405,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1088_1402-4896_ad081b,doi10.1088_1402-4896_ad081b,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1039_d2sc04160j,doi10.1039_d2sc04160j,Data availability The data supporting this article are available in the ESI.†,False,True,False dataset,10.1088_2053-1591_ad019a,doi10.1088_2053-1591_ad019a,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10,doi10,"Data availability The data supporting the findings of this study are available from the corresponding author upon reasonable request. Structure factor amplitudes and coordinates for the crystal structures of MB-60 bound PreP and Aβ-bound PreP are deposited in the Protein Data Bank under accession number 4RPU and 4NGE, respectively. The 3D cryoEM density maps generated in this study is deposited in the Electron Microscopy Data Bank under accession codes EMD-22278 (Apo-PreP pC1 state), EMD-22279 (Apo-PreP pC2 state), EMD-22280 (Apo-PreP open state), EMD-22281 (Aβ-bound PreP), and EMD-22282 (CS27-bound PreP). The corresponding atomic coordinates are deposited in the Protein Data Bank under accession numbers 6XOS (Apo-PreP pC1 state), 6XOT (Apo-PreP pC2 state), 6XOU (Apo-PreP open state), 6XOV (Aβ-bound PreP), and 6XOW (CS27-bound PreP). EM data in the form of unprocessed micrographs is deposited in the Electron Microscopy Public Image Archive (EMPIAR) under accession number EMPIAR-10937. The tomogram shown in the figures is deposited to the EMD with the accession number EMD-25921. Raw tomography data is deposited to EMPIAR with the accession number EMPIAR-10929. The HDX-MS data are deposited in ProteomeXchange under the accession number PXD029542. SAXS data is deposited in the Small Angle Scattering Biological Data Bank (SASBDB) under accession codes SASDKK3 (Apo-PreP), SASDKL3 (MB60-PreP), SASDKM3 (CS27-PreP), and SASDKN3 (Aβ-PreP). Source data are provided with this paper.",False,True,True dataset,10.1002_hbm.25192,doi10.1002_hbm.25192,DATA AVAILABILITY STATEMENT The MRE templates are made openly available (github.com/mechneurolab/mre134) to foster collaboration across research institutions and to support robust cross‐center comparisons.,False,True,True dataset,10.1088_2631-8695_ad0928,doi10.1088_2631-8695_ad0928,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://doi.org/https://vlsicad.ucsd.edu/GSRC/bookshelf/Slots/Partitioning/TESTCASES/netD20-29.tar.gz.,False,True,False dataset,10.1371_journal.pntd.0011397,doi10.1371_journal.pntd.0011397,Data Availability Statement The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1038_s41586-023-06376-y,doi10.1038_s41586-023-06376-y,"Data availabilityUnprocessed gels and micrographs are provided in Supplementary Fig. 1. All materials associated with this study are also deposited on Zenodo (10.5281/zenodo.7083051). The accession codes for proteins presented in Extended Data Fig. 5b are provided in the corresponding legend and can be publicly accessed at Protein Data Bank with the following identifiers: 1Y7Y, 2B5A, 3G5G and 5WOQ. Other experimental data that support the findings of this study are available without restriction by request from the corresponding author. Source data are provided with this paper.Code availabilityCustom code used to search, extract and analyse phage genome databases based on user-defined features and custom code for smFISH analysis are deposited on Zenodo (10.5281/zenodo.7083051).",False,True,True dataset,10.1371_journal.pbio.3001024,doi10.1371_journal.pbio.3001024,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1371_journal.pgen.1011134,doi10.1371_journal.pgen.1011134,Data Availability Statement: All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10,doi10,"Availability of data and materials The data for this research study were collected under informed consent of the volunteers. Thus, access to the data will be subject to approval by the Vanderbilt University Medical Center Institutional Review Board.",True,True,False dataset,10.1038_s41598-020-76091-5,doi10.1038_s41598-020-76091-5,Data availability The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pone.0233658,doi10.1371_journal.pone.0233658,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pbio.3002098,doi10.1371_journal.pbio.3002098,"Data AvailabilityAll relevant data are within the paper and its Supporting Information files. In addition, the ChIC-seq data have been deposited. GEO accession number for the ChIC-seq data is GSE212936.",False,True,False dataset,10.1186_s13018-021-02887-4,doi10.1186_s13018-021-02887-4,Availability of data and materialsThe datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1038_s41598-020-64158-2,doi10.1038_s41598-020-64158-2,Data availabilityThe authors declare that all other data supporting the findings of this study are available within the article and its Supplementary Information Files.,True,True,False dataset,10.1088_2515-7639_acd723,doi10.1088_2515-7639_acd723,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pwat.0000184,doi10.1371_journal.pwat.0000184,"Data Availability Statement: The gridMET datasets are cataloged at https://thredds.northwestknowledge.net/thredds/reacch_climate_MET_catalog.html. Land use data are available online through the California Natural Resources Agency available at https://data.cnra.ca.gov/dataset/statewide-crop-mapping. Crop coefficients are available online California Natural Resources Agency available at https://data.cnra.ca.gov/dataset/cal-simetaw-unit-values. Code for calculations used in this manuscript is available on Github (https://github.com/kdrechsler2/Ag-Tax) and can be run in Octave (open access) or MATLAB. Spatial analyses were restricted to California Department of Water Resources sub-basin boundaries denominated as Planning Areas 606, 607, 608, 609, 702, 703, 704, 705, 706, 708, 709, and 710 described here https://data.cnra.ca.gov/dataset/ca-gw-basin-boundary-descriptions. These largely comport with the 15 groundwater basins used by Escriva-Bou et al. 2023. Map data sources for Fig 1 are cropping from CNRA as above; California State Outline from TIGER 2016 United State Census Bureau; and Global base map from Esri, HERE, Garmin, FAO, NOAA, USGS, © OpenStreetMap contributors, and the GIS User Community.",True,True,True dataset,10.1038_s41556-023-01178-w,doi10.1038_s41556-023-01178-w,Data availabilityLipidomics data generated in this study are included in Supplementary Tables 3 and 4. Source data are provided with this paper. All other data supporting the findings of this study are available from the corresponding authors on reasonable request. Requests will be handled according to the Harvard T. H. Chan School of Public Health policies regarding MTA and related matters.,False,True,False dataset,10.1371_journal.pone.0223386,doi10.1371_journal.pone.0223386,Data Availability Statement All software files are available through gitHub. (https://github.com/ukalwa/nematode_egg_counting).,False,True,True dataset,10.1038_s44172-022-00044-1,doi10.1038_s44172-022-00044-1,"Data availability All imaging data (MRI and digital pathology) analyzed in this study is available upon request. Please contact Kaitlin Stouffer (kstouff4@jhmi.edu) for requests. Code availability Code used for training and applying UNET in tau tangle detection can be found here: https://github.com/twardlab/ADproject. Code for solving Projective LDDMM, building measure theoretic data representations, and resampling across scales can be found here: https://github.com/kstouff4/projective-lddmm.",False,True,True dataset,10.1186_s12883-023-03144-3,doi10.1186_s12883-023-03144-3,Data Availability The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1088_1361-6501_ad080a,doi10.1088_1361-6501_ad080a,Data availability statementThe data cannot be made publicly available upon publication because they are owned by a third party and the terms of use prevent public distribution. The data that support the findings of this study are available upon reasonable request from the corresponding author.,False,True,False dataset,10.1038_s41467-023-38411-x,doi10.1038_s41467-023-38411-x,"Data availabilityThe atomic coordinates and the electron microscopy maps have been deposited in the Protein Data Bank (PDB) under accession numbers 8IUK, 8IUL, and 8IUM and Electron Microscopy Data Bank (EMDB) accession number EMD-35724, EMD-35725, and EMD-35726 for the PGF2α–FP–Gq and the LTPA–FP–Gq and the TFPA–FP–Gq complex, respectively. Previously published structures can be accessed via accession codes: 7CX2; 7D7M; 6IIU; 6WHY; 7MBY; 6WHA; 7WKD. Source data are provided in this paper.",False,True,True dataset,10.1371_journal.pone.0284104,doi10.1371_journal.pone.0284104,"Data Availability Statement There are legal restrictions on sharing the data set used for this study, as the data are owned by Koa Health, the funder organisation, and was used under licence for the current study, and so are not publicly available. These restrictions are imposed by Koa Health. Data are however available from the authors upon reasonable request (with non-commercial intent) and with permission of Koa Health. A non-author contact information to which data requests may be sent is: Daniel Clarke, SVP of CyberSecurity at Koa Health, email: d.clarke@koahealth.com.",False,True,False dataset,10.7554_elife.86556,doi10.7554_elife.86556,"Data availability All data generated or analyzed during this study are included in the manuscript and supporting source data files. Source Data files have been provided for Figure 2, Figure 2 - Figure supplement 1, Figure 3, Figure 4, and Figure 4 - Figure supplement 1. Video Files have been provided for Figure 6 - Videos 1- 6.",False,True,True dataset,10.1371_journal.pone.0228134,doi10.1371_journal.pone.0228134,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pgen.1010766,doi10.1371_journal.pgen.1010766,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pcbi.1009023,doi10.1371_journal.pcbi.1009023,Data Availability Statement All relevant data are within the manuscript and its supporting information. The code is now available on GitHub: https://github.com/noelenorris/ABC_proteome_allocation.,False,True,True dataset,10.1371_journal.ppat.1008708,doi10.1371_journal.ppat.1008708,"Data Availability Statement The sequencing data are posted in the NCBI Sequence Read Archive Database, accession number PRJNA630461.",False,True,False dataset,10,doi10,DATA AVAILABILITY The datasets generated in the current study are available upon request from the corresponding authors.,False,True,False dataset,10.3390_genes14061253,doi10.3390_genes14061253,Data Availability Statement The data presented are available on request from the corresponding author. The data are not publicly available due to ethical privacy.,False,True,False dataset,10.1371_journal.pone.0285894,doi10.1371_journal.pone.0285894,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0286321,doi10.1371_journal.pone.0286321,"Data Availability Statement The data that support the findings are within the paper. In order to protect subjects' confidentiality and privacy, additional detailed data are only available on request. Interested researchers may contact the Academic Ethics Committee of Wuhan Sports University (2013028@whsu.edu.cn) directly.",False,True,False dataset,10.1371_journal.pcbi.1011739,doi10.1371_journal.pcbi.1011739,Data Availability Statement: All data and computational code are available on OSF at https://osf.io/dw8ez/.,False,True,True dataset,10.1021_jacs.3c02742,doi10.1021_jacs.3c02742,Accession CodesPDB id 8C3W contains the coordinates and associated structure factors of dnHEM1 that have been deposited in the Protein Data Bank (PDB) database.,True,True,False dataset,10.3390_ijerph18052223,doi10.3390_ijerph18052223,Data Availability StatementThe data presented in this study are available on request from the corresponding author. The data are not publicly available due to privacy of participants.,False,True,False dataset,10.3390_nu13103343,doi10.3390_nu13103343,"Data Availability Statement The UK Biobank data are available through the UK Biobank Access Management System https://www.ukbiobank.ac.uk/ (accessed on 20 December 2020). We will return the derived data fields following UK Biobank policy; in due course, they will be available through the UK Biobank Access Management System.",True,True,False dataset,10.1371_journal.pone.0224148,doi10.1371_journal.pone.0224148,"Data Availability Statement The mass spectrometry proteomics data, including search, are available at the ProteomeXchange Consortium (www.proteomexchange.org) via the PRIDE partner repository with datasets identifiers PXD004970 and PXD004992.",False,True,False dataset,10.3390_ijms241210237,doi10.3390_ijms241210237,Data Availability StatementAll data supporting our results is present in the paper.,False,True,False dataset,10.1186_s12977-021-00568-y,doi10.1186_s12977-021-00568-y,Availability of data and materials Not applicable.,False,True,False dataset,10.1371_journal.pcbi.1011149,doi10.1371_journal.pcbi.1011149,Data Availability Statement Code for replicating the analysis with synthetic data are available at https://github.com/sjfox/austin-disparities. Raw hospital admission and COVID-19 testing data are private due to their sensitive nature and will be made available upon reasonable request to Austin Public Health here; https://www.austintexas.gov/email/health.,False,True,True dataset,10.1088_1361-6420_ad0fac,doi10.1088_1361-6420_ad0fac,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pone.0241407,doi10.1371_journal.pone.0241407,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pgph.0001199,doi10.1371_journal.pgph.0001199,"Data Availability Statement All data relevant to the paper has been presented within the paper itself (in the form of participant quotations). The datasets generated and/or analysed during the current study are not publicly available to protect participant confidentiality but are available in an anonymised form from the corresponding author on reasonable request. In the interest of maintaining long-term data accessibility, the University of the Western Cape Research Office can also be contacted for data requests at: research-office@uwc.ac.za.",False,True,False dataset,10.1088_1361-6501_ad1289,doi10.1088_1361-6501_ad1289,Data availability statementThe data cannot be made publicly available upon publication because they contain commercially sensitive information. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1088_1361-6668_acf904,doi10.1088_1361-6668_acf904,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s41598-023-39102-9,doi10.1038_s41598-023-39102-9,"Data availabilityThe RNAseq and ChIPseq datasets generated and analyzed in this study are available in the Gene Expression Omnibus (GEO) repository, accession numbers: GSE233301, GSE233302 and GSE233303.",False,True,True dataset,10.1371_journal.ppat.1009980,doi10.1371_journal.ppat.1009980,"Data Availability Statement All crystal structures are available from the RCSB protein structure database (accession numbers 7O9O, 7O9P, 7O9Q).",False,True,False dataset,10.1016_j.neuroimage.2020.117112,doi10.1016_j.neuroimage.2020.117112,Data and code availability statement Data are freely available via nitrc.org. Code will be made available upon request.,False,True,True dataset,10.7554/elife,doi10.7554/elife,"Data availability Entire data from the paper is available in the .xls data file attached. The attached data file is subdivided into separate sheets, each for a single experiment and accompanied with respective heading and descriptions, and provides the possibility of replicating all figures and statistics. A summary of data is presented in the tables and figures within the paper. A detailed description of an author algorithm for CSF space segmentation from 3D-CISS images, as well as DWI analysis, is provided in the Materials and Methods section (page 14 onward).",False,True,False dataset,10.1088_1748-3190_ad0aa8,doi10.1088_1748-3190_ad0aa8,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://github.com/ofercak/Dye-Based-Flow-Structure-Identification.,False,True,True dataset,10.1088_2057-1976_ad00c0,doi10.1088_2057-1976_ad00c0,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://doi.org/10.17605/OSF.IO/SWQ9X.,False,True,False dataset,10.7554_elife.85970,doi10.7554_elife.85970,"Data availabilitySLCR-seq mapped sequencing reads, gene-by-sample count matrices, and metadata can be found at NCBI GEO for deafening (accession number GSE200663) and unilateral LMAN lesion datasets (GSE200664).",False,True,False dataset,10.1088_1402-4896_ad0c3c,doi10.1088_1402-4896_ad0c3c,Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1088_1361-6501_ad042a,doi10.1088_1361-6501_ad042a,Data availability statementThe data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pone.0217504,doi10.1371_journal.pone.0217504,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1038_s41598-022-09906-2,doi10.1038_s41598-022-09906-2,Data availabilityAll data generated or analyzed during this study are included in this published article and Supplementary material.,False,True,False dataset,10.1038_s41467-020-20038-x,doi10.1038_s41467-020-20038-x,Data availability The data that support the findings of this study are available from the corresponding author (Y.O.) upon reasonable request.,False,True,False dataset,10.1371_journal.pone.0245923,doi10.1371_journal.pone.0245923,Data Availability Statement Data are available from the online: https://dhsprogram.com/data/available-datasets.cfm.,False,True,False dataset,10.7554_elife.82676,doi10.7554_elife.82676,"Data availability All data collected and analyzed for this study are included in the manuscript and supporting files or available on Dryad. Custom scripts for single molecule analysis can be found on GitHub (https://github.com/lnocka/Single_molecule_tracking copy archived at Nocka, 2023). The following datasets were generated: NockaLMEisenTIavaroneAGrovesJTGrovesJTKuriyanJ2023Stimulation of the catalytic activity of the tyrosine kinase Btk by the adaptor protein Grb2: Part 3Dryad Digital Repository10.5061/dryad.prr4xgxrf NockaLMEisenTIavaroneAGrovesJTGrovesJTKuriyanJ2023Stimulation of the catalytic activity of the tyrosine kinase Btk by the adaptor protein Grb2: Part 2Dryad Digital Repository10.5061/dryad.jwstqjqfd NockaLMEisenTIavaroneAGrovesJTGrovesJTKuriyanJ2023Stimulation of the catalytic activity of the tyrosine kinase Btk by the adaptor protein Grb2: Part 1Dryad Digital Repository10.5061/dryad.8sf7m0ctd",False,True,True dataset,10.1186_s12879-022-07247-z,doi10.1186_s12879-022-07247-z,Availability of data and materials All data available for this study are presented in the manuscript.,False,True,False dataset,10.1371_journal.pone.0262053,doi10.1371_journal.pone.0262053,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1136_bmjdrc-2019-000882,doi10.1136_bmjdrc-2019-000882,"Data availability statement Data are available upon reasonable request. Data will be shared in the form of local and regional presentations and manuscript publications that will be publically available to all individuals in the scientific community. We will willingly share our knowledge, protocol, and expertise when asked. Requests for commercially based corporations will be negotiated by our institution’s Technology Transfer Office.",False,True,True dataset,10.3390_biomedicines11020375,doi10.3390_biomedicines11020375,Data Availability Statement: Not applicable.,False,True,False dataset,10.1038_s41467-023-40444-1,doi10.1038_s41467-023-40444-1,"Data availabilitySource data are provided with this paper. All other data are available from the lead contact, Na Ji (jina@berkeley.edu) upon request. Source data are provided with this paper.Code availabilityCustom written MATLAB codes are available at https://github.com/JiLabUCBerkeley/SCimaging.",True,True,True dataset,10.1073_pnas.2300360120,doi10.1073_pnas.2300360120,"Data, Materials, and Software Availability The EM maps and corresponding structures reported here have been deposited in EMDB (Electron Microscopy Data Bank) and PDB with the following accession IDs: HR1HR2 N969K: EMDB 28947 (35), PDB 8fa1 (36); and Omicron HR1—42Gv2: EMDB 28948 (37), PDB 8fa2 (38).",False,True,True dataset,10.1038_s41467-022-35532-7,doi10.1038_s41467-022-35532-7,"Data availability The P, T data generated in this study have been deposited in the Cor- nell University e-commons data repository database under accession code https://doi.org/10.7298/1sw8-f758.",False,True,True dataset,10,doi10,"Data availability The velocity field and wave height products used to run TrackMPD model are available on the E.U. Copernicus Marine Environment Service Information website (CMEMS, http://marine.copernicus.eu/). The Mediterranean shore steepness is available on Copernicus Land Monitoring Service (European Environment Agency, EEA) and on the US Geological Survey website (https://earthexplorer.usgs.gov/). The crossroadness and plastic crossroads maps, the detailed origin of the plastic debris intercepted by the plastic crossroads, the plastic sources distribution, as well all the data necessary to produce the figures of the Main Text and Supplementary Note are available at https://doi.org/10. 5281/zenodo.5931213. The in situ plastic concentrations are available at https://doi.org/ 10.5281/zenodo.5538237. Code availability The TrackMPD code is available at https://github.com/IJalonRojas/TrackMPD.",False,True,True dataset,10.1371_journal.pmed.1004337,doi10.1371_journal.pmed.1004337,"Data Availability Statement: The data are freely available upon request by contacting Esther López-García at the Department of Preventive Medicine and Public Health, Faculty of Medicine, Universidad Autónoma de Madrid (UAM)-IdiPaz, CIBERESP (CIBER of Epidemiology and Public Health), 28029, Madrid, Spain. E-mail address: esther.lopez@uam.es. UAM website: https://www.uam.es/ss/Satellite/Medicina/es/1242658444664/subhome/Departamento_de_Medicina_Preventiva_y_Salud_Publica_y_Microbiologia.htm.",True,True,False dataset,10.1038_s41467-023-40142-y,doi10.1038_s41467-023-40142-y,Data availabilityOriginal data is provided in Source Data file. All other data is available upon request. Source data are provided with this paper.Code availabilityThe customized python code for data analyzation can be found at https://github.com/sihaohuanguc/larva_trajectory_process or Zenodo (10.5281/zenodo.8011787).,True,True,True dataset,10.1038_s41467-020-14862-4,doi10.1038_s41467-020-14862-4,"Data availability Crystal structure coordinates and structure factors have been deposited to the Protein Data Bank under accession codes dsA2/GM (6TDO), dsA2/GL (6TDP), dsA2/GM2 (6TDQ), dsA2/peptide_free-1 (6TDR), and dsA2/peptide_free-2 (6TDS), respectively. The thermostability fluorescence data for wtA2 and dsA2 in the presence of different dipeptide concentrations are reported as the 350/330 ratio in the Source Data file for Fig. 1a, b. The outcome of the dihedral angle distribution from the MD simulations is also reported in the Source Data file for Fig. 6a, b. Other data are available from the corresponding authors upon reasonable request.",False,True,True dataset,10.1371_journal.pwat.0000227,doi10.1371_journal.pwat.0000227,"Data Availability Statement: Data are available from the University of Kentucky Center for Clinical and Translational Science RedCAP data repository (https://www.ccts.uky.edu/services-resources-researchers/redcap) for researchers who meet the criteria for access to human subjects data. To access the data, please contact the database administrator, Brent Seeders (brent.seeders@uky.edu) and request access to data from the Martin County Drinking Water Project.",False,True,False dataset,10.3389_fcell.2023.1118766,doi10.3389_fcell.2023.1118766,"Data availability statement The original contributions presented in the study are publicly available. This data can be found here: The RNA-Seq data presented in the study are deposited in the Gene Expression Omnibus (GEO) database, accession no GSE221908. The TMT-prroteomics data are deposited to the ETH Research Collection, DOI: https://doi.org/10.3929/ethz-b-000602269.",False,True,False dataset,10.1038_s41598-022-08333-7,doi10.1038_s41598-022-08333-7,Data availability The datasets used and/or analyzed during the current study will be available from the corresponding author on reasonable request.,False,True,False dataset,10.15252_embj.2023114534,doi10.15252_embj.2023114534,"Data availabilityCustom software written in MATLAB (R2021a) was used for TIRF colocalization residence lifetime analysis and plot generation. The source code is publicly available at https://github.com/FredHutch/Automated‐Single‐Molecule‐Colocalization‐Analysis. All primary datasets and associated data used for analysis in all figures are available at Zenodo, https://zenodo.org/ and assigned the identifier (10.5281/zenodo.7939301). All primary data reported in this paper will be shared by the lead contact upon request.",False,True,True dataset,10.1371_journal.pone.0218311,doi10.1371_journal.pone.0218311,Data Availability Statement The data underlying the results presented in the study are available from the Open Science Framework via https://osf.io/uatkn/.,False,True,False dataset,10.1371_journal.pmed.1003980,doi10.1371_journal.pmed.1003980,Data Availability Statement All participating ethics committees were project partners and granted us access to confidential study protocols under the condition that only aggregated data will be made publicly available. All investigators signed a corresponding confidentiality agreement with ethics committees. All aggregated data that were used for this study are presented in Tables and Figures of the manuscript or the appendix. The appendix also includes the used statistical code (STATA; S5 Text).,False,True,True dataset,10.1371_journal.pone.0285197,doi10.1371_journal.pone.0285197,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1016_j.cell.2023.07.039,doi10.1016_j.cell.2023.07.039,Data and code availabilityAll sequencing data have been deposited at the NCBI Sequence Read Archive database and are publicly available as of the date of publication. Accession numbers are listed in the key resources table.All original code is available in Notes S1 and S2.Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.,False,True,True dataset,10.1186_s12909-023-04421-y,doi10.1186_s12909-023-04421-y,Availability of data and materials The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pstr.0000101,doi10.1371_journal.pstr.0000101,Data Availability Statement: All interview questions and those answers that are anonymized are available in the manuscript and Supporting Information files. Some data cannot be shared publicly due to privacy of the interview participants.,False,True,True dataset,10.1371_journal.pcbi.1009407,doi10.1371_journal.pcbi.1009407,"Data Availability Statement All code written in support of this publication, processed data, simulation input files and simulation out put files are publicly available at https://gin.g-node.org/oportoles/SwitchingFCalongAtask. Raw data is available at https://www.jelmerborst.nl/models/.",True,True,True dataset,10.1038_s41598-023-38605-9,doi10.1038_s41598-023-38605-9,Data availabilityThe datasets generated and analysed during the current study are available from the corresponding authors on reasonable request. No sequencing was involved in this study.,True,True,False dataset,10.14814_phy2.15750,doi10.14814_phy2.15750,DATA AVAILABILITY STATEMENTThe datasets analyzed for this study are available upon request to the corresponding author.,False,True,False dataset,10.1371_journal.pbio.3002069,doi10.1371_journal.pbio.3002069,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1038_s41467-023-39441-1,doi10.1038_s41467-023-39441-1,"Data availabilityThe 3D EM maps of the S. cerevisiae apo Pol α in states I at 3.7 Å and II at 3.8 Å, Pol α bound to template ssDNA (state III) at 5.6 Å, Pol α with T/P8 at 4.8 Å, Pol α with T/P10 at 4.5 Å, and Pol α with T/P15 at 3.5 Å resolution have been deposited in the EMDB under accession codes EMD-29345, EMD-29346, EMD-29347, EMD-29349, EMD-29351, and EMD-29352 respectively. The corresponding atomic models have been deposited in the Protein Data Bank under accession codes 8FOC, 8FOD, 8FOE, 8FOH, 8FOJ, and 8FOK, respectively. Source data are provided with this paper.",False,True,True dataset,10.1371_journal.pgen.1011144,doi10.1371_journal.pgen.1011144,Data Availability Statement: All code from bgspy and our Jupyter Lab (Kluyver et al. n.d.) notebooks for analysis are available on GitHub (https://github.com/vsbuffalo/bprime). The main model fits are available as Python Pickle objects on Data Dryad repository (https://doi.org/10.5061/dryad.qnk98sfnv).,False,True,True dataset,10.1155_2019_3172647,doi10.1155_2019_3172647,The original data of the current study are available in the following website: https://figshare.com/s/75bd66bf6fb68b4b0106.,False,True,False dataset,10.1371_journal.pmed.1004313,doi10.1371_journal.pmed.1004313,Data Availability Statement: The data underlying the results presented in the study are available from the Open Science Framework (https://osf.io/5ne6g).,False,True,False dataset,10.1126_sciadv.adg3257,doi10.1126_sciadv.adg3257,Data and materials availability: All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. All primary sequencing data have been deposited in the NCBI’s Gene Expression Omnibus (GEO) under accession code GSE221252.,True,True,True dataset,10.3390_fractalfract7050351,doi10.3390_fractalfract7050351,"Data Availability Statement: Data sharing does not apply to this article, as no new data were created or analyzed in this study.",False,True,False dataset,10.1088_1361-6501_ad076c,doi10.1088_1361-6501_ad076c,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: http://phm09challenge.blogspot.com.,False,True,False dataset,10.1371_journal.pone.0290569,doi10.1371_journal.pone.0290569,Data Availability Statement: All Data files are available from the Figshare database: Links: S1_Measuring Facial Mimicry Affdex vs. EMG_Psychometric Data https://figshare.com/articles/dataset/Untitled_ItemMeasuring_Facial_Mimicry_Automated_Facial_Coding_vs_EMG_Psychometric_Data/21777281 S2_Measuring Facial Mimicry Affdex vs. EMG_EMG Data https://figshare.com/articles/dataset/Measuring_Facial_Mimicry_Automated_Facial_Coding_vs_EMG_EMG_Data/21777275 S3_Measuring Facial Mimicry Affdex vs. EMG_Affdex Data https://figshare.com/articles/dataset/Measuring_Facial_Mimicry_Automated_Facial_Coding_vs_EMG_Affdex_Data/21777200 S4_Measuring Facial Mimicry Affdex vs. EMG_Code for Statistics in R https://figshare.com/articles/software/S4_Measuring_Facial_Mimicry_Affdex_vs_EMG_Code_for_Statistics_in_R/22639150.,False,True,True dataset,10.7554_elife.78558,doi10.7554_elife.78558,Data availability 16S rRNA gene sequencing data (Figure 3D) and RNA sequencing data (Figure 6A and B; Figure 1—figure supplement 1; Figure 6—figure supplement 1) are available from the Sequence Read Archive under BioProject ID PRJNA793870. All mouse strains used are available commercially. The following dataset was generated: PendseMRajPHooperLV2022Macrophages control gastrointestinal motility through complement component 1qNCBI BioProjectPRJNA793870 The following previously published dataset was used: GattuSBangYCharaAHarrisTKuangZRuhnKSockanathanSHooperLV2019Epithelial retinoic acid receptor beta regulates serum amyloid A expression and vitamin A-dependent intestinal immunityNCBI Gene Expression OmnibusGSE122471,False,True,False dataset,10.1073_pnas.2221163120,doi10.1073_pnas.2221163120,"Data, Materials, and Software Availability Python scripts for analysis are available at https://github.com/d-ghose/laub (53). Datasets generated during this study have been deposited in the National Center for Biotechnology Information Sequence Read Archive (NCBI SRA). Raw reads can be found under BioProject ID PRJNA902002 (54). All other data are included in the manuscript and/or SI Appendix.",True,True,True dataset,10.1371_journal.ppat.1009495,doi10.1371_journal.ppat.1009495,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.3390_md19090504,doi10.3390_md19090504,Data Availability StatementThe data presented in this study are available on request from the corresponding author.,False,True,False dataset,10.1371_journal.pone.0285697,doi10.1371_journal.pone.0285697,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pone.0269830,doi10.1371_journal.pone.0269830,Data Availability Statement All relevant data are within the article and its Supporting information files.,False,True,False dataset,10.1186_s12870-020-02783-9,doi10.1186_s12870-020-02783-9,Availability of data and materials The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1084_jem.20230668,doi10.1084_jem.20230668,"Data availabilityData are provided in Tables S1, S2, and S3. The raw sequencing data and computer scripts associated with Fig. 2 have been deposited at Github (https://github.com/stratust/igpipeline/tree/igpipeline2_timepoint_v2), and single-cell sequencing data is deposited in GSE233230. This study also uses data from “A Public Database of Memory and Naive B-Cell Receptor Sequences” (https://doi.org/10.5061/dryad.35ks2), PDB (6VYB and 6NB6), cAb-Rep (https://cab-rep.c2b2.columbia.edu/), Sequence Read Archive (accession SRP010970), and from “High frequency of shared clonotypes in human B cell receptor repertoires” (Soto et al., 2019). Computer code to process the antibody sequences is available at GitHub (https://github.com/stratust/igpipeline/tree/igpipeline2_timepoint_v2).",False,True,True dataset,10.1371_journal.pone.0284609,doi10.1371_journal.pone.0284609,"Data Availability Statement The study’s minimal underlying dataset can be found as follows: 1. Annual counts of deaths and crude mortality rates among state prisoners and yearend prison custody populations for all 50 states for years 2001-2015 obtained from the Bureau of Justice Statistics are available as Supplementary Information files. 2. De-identified individual-level data for all deaths among California state prisoners obtained from the from the California Deaths in Custody (DIC) reporting program are available as a Supplementary Information file. 3. Individual-level state prison inmate term records for California and several other states for years 2000-2015 are available as a restricted use dataset from the Inter-university Consortium for Political and Social Research (ICPSR). See: United States Department Of Justice. Office Of Justice Programs. Bureau Of Justice Statistics. National Corrections Reporting Program, 2000-2015: Version 1. 2017. doi:10.3886/ICPSR36746.V1. This data source is available from ICPSR for researchers who meet the criteria for access via https://www.icpsr.umich.edu/web/pages/ (ICPSR 36746).",False,True,True dataset,10.1155_2020_2389527,doi10.1155_2020_2389527,Data Availability The yeast cell gene chip data used to support the findings of this study have been deposited by Spellman et al. in Stanford University.,False,True,False dataset,10.1186_s12889-023-15713-9,doi10.1186_s12889-023-15713-9,"Data Availability The datasets used and analysed during the current study are available from the University of Bristol data archive, https://data.bris.ac.uk/data/.",False,True,False dataset,10.1371_journal.pone.0285835,doi10.1371_journal.pone.0285835,Data Availability Statement All relevant data are within the paper.,False,True,False dataset,10.1186_s12916-023-02895-7,doi10.1186_s12916-023-02895-7,Availability of data and materials The data that support the findings of this study are available from the corresponding author upon reasonable request.,False,True,False dataset,10.1371_journal.pone.0255694,doi10.1371_journal.pone.0255694,Data Availability Statement All relevant data are within the manuscript.,False,True,False dataset,10.1038_s41467-023-36996-x,doi10.1038_s41467-023-36996-x,"Data availability Data in Figs. 2 and 3, Supplementary Figures 3–6, 8, and 10, and DNA receptor sequences in Table 1 and Supplementary Table 1 are provided in the Source Data file. Chemicals catalogs are provided as Supplementary Data 1 and DNA staple sequences are provided as Supplementary Data 2. Source data are provided with this paper.",False,True,False dataset,10.1088_1748-3190_ad1336,doi10.1088_1748-3190_ad1336,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1186_s13229-022-00503-8,doi10.1186_s13229-022-00503-8,"Availability of data and materials The dataset generated during and analyzed during the current study is not publicly available due the parameters of parent/participant consent, but is available from the corresponding author on reasonable request.",False,True,False dataset,10.1371_journal.pone.0300509,doi10.1371_journal.pone.0300509,Data Availability Statement: The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting Information Files.,False,True,False dataset,10.1088_2631-8695_ad1084,doi10.1088_2631-8695_ad1084,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pone.0250260,doi10.1371_journal.pone.0250260,Data Availability Statement All relevant data are within the manuscript and its Supporting information files.,False,True,True dataset,10.1371_journal.pntd.0011798,doi10.1371_journal.pntd.0011798,Data Availability Statement: Data cannot be shared publicly because of confidentiality. Data are available from the Centre for Bilharzia and Tropical Health Research for researchers who meet the criteria for access to confidential data. Email address for request: brightresearch.cbthr@gmail.com.,False,True,False dataset,10.3390_nu11061240,doi10.3390_nu11061240,Availability of Data and Materials The datasets used and/or analyzed in the present study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1088_1402-4896_ad130d,doi10.1088_1402-4896_ad130d,Data availability statementAll data that support the findings of this study are included within the article.,False,True,False dataset,10.1002_advs.202101333,doi10.1002_advs.202101333,Data Availability Statement The data that support the findings of this study are available from the corresponding author upon reasonable request.,False,True,False dataset,10.1371_journal.pone.0266237,doi10.1371_journal.pone.0266237,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1007_s10661-023-11378-4,doi10.1007_s10661-023-11378-4,Data availabilityThe raw data analyzed during the current study are available from Miljödata-MVM. The generated data are included in this published article (and its supplementary information files). The full datasets generated or analyzed during this study are available from the corresponding author on reasonable request.,False,True,True dataset,10.1088_1361-6420_ad01d4,doi10.1088_1361-6420_ad01d4,"Data availability statementThe manuscript contains no data from true experiments. The only data used was synthetically generated via numerical simulation. Those simulations are described in the manuscript with sufficient detail that they are reproducible. If requested, we would be happy to share the data or the Matlab codes used, however, they are not sufficiently documented etc to be made available online at this time. The data that support the findings of this study are available upon reasonable request from the authors.",False,True,True dataset,10.1088_1361-6528_ace97b,doi10.1088_1361-6528_ace97b,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1088_1402-4896_ad1634,doi10.1088_1402-4896_ad1634,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1088_2632-2153_ad1200,doi10.1088_2632-2153_ad1200,"Data availability statementThe data cannot be made publicly available upon publication because the cost of preparing, depositing and hosting the data would be prohibitive within the terms of this research project. The data that support the findings of this study are available upon reasonable request from the authors. https://github.com/hagabbar/cnn_matchfiltering.",False,True,True dataset,10.3389_fphy.2021.775465,doi10.3389_fphy.2021.775465,"DATA AVAILABILITY STATEMENT The raw data supporting the conclusions of this article will be made available by the author, without undue reservation.",False,True,False dataset,10.1107_s2052252522010624,doi10.1107_s2052252522010624,"6. Software availability Smart Leginon is freely and publicly available as two components: (1) Leginon and Autoscreen are in myami-3.6 release and above (http://leginon.org) and licensed under the Apache License, Version 2.0; and (2) Ptolemy is publicly available for academic use only (https://github.com/SMLC- NYSBC/ptolemy) and licensed under CC BY-NC 4.0. A tutorial for how to set up and use Smart Leginon and Auto- screen is available at https://emg.nysbc.org/redmine/projects/ leginon/wiki/Multi-grid_autoscreening",False,True,True dataset,10.1371_journal.pgph.0001314,doi10.1371_journal.pgph.0001314,"Data Availability Statement SEER data is publicly available on request from the National Cancer Institute (NCI), and can be downloaded through this link - https://seer.cancer.gov/data-software/.",False,True,True dataset,10.1038_s41467-023-40595-1,doi10.1038_s41467-023-40595-1,"Data availabilityThe data generated in this research is available in the Source Data file provided with this work. Reagents are available from the Lead Contact. The RNA-seq and snRNA-seq datasets generated in this work have been deposited in the Gene Expression Omnibus (GEO) databases under the following accession codes:GSE189214, RNA-seq dataset of thoraces of wildtype flies or flies with gut yki-tumors at different time points after tumor induction.GSE189218, RNA-seq dataset of thoraces upon overexpression of REPTOR[ACT] in muscle with dMef2-GAL4.GSE228034, RNA-seq dataset of C2C12 myofibers overexpressing Crebrf.GSE227038, snRNA-seq dataset of thoraces upon REPTOR[ACT] or FoxO[ACT] overexpression in muscle with dMef2-GAL4.The snRNA-seq dataset has also been made publicly available at DRSC/TRiP Functional Genomics Resources data portal [https://www.flyrnai.org/scRNA/thorax/] to allow users to query the expression of any gene of interest in thoraces. Source data are provided with this paper.",False,True,True dataset,10.1186_s12913-023-09326-6,doi10.1186_s12913-023-09326-6,Availability of data and materials The datasets used and/or analysed during the study are available from the corresponding author on request.,False,True,False dataset,10.1073_pnas.2306965120,doi10.1073_pnas.2306965120,"Data, Materials, and Software AvailabilityRaw scRNA sequencing data generated in this study were deposited to the NCBI Gene Expression Omnibus under the accession number GSE240009 (81).",False,True,True dataset,10.1186_s12885-020-6609-x,doi10.1186_s12885-020-6609-x,Availability of data and materialsThe dataset used and analysed during the present study is available from the corresponding author upon reasonable request.,False,True,False dataset,10.1073_pnas.2300052120,doi10.1073_pnas.2300052120,"Data, Materials, and Software Availability Data have been deposited in the controlled access section of DbGaP consistent with informed consent of tissue donors and can be accessed through the direct link https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000639.v2.p1 (92).",False,True,True dataset,10.1371_journal.pone.0295362,doi10.1371_journal.pone.0295362,Data Availability Statement: All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10,doi10,"DATA AVAILABILITY The processed RNA-sequencing data generated during this study are publicly available in Gene Expression Omnibus under the accession https://identifiers.org/geo: GSE14182857. The raw fastq files are publicly available in Sequence Read Archive under the accession https://identifiers.org/ncbi/insdc.sra:SRP23660556. Immunohistochemical quantification staining data and Supplementary Tables 1–14 are publicly available in the figshare repository: https://doi.org/10.6084/m9.figshare.1279370055. Data supporting Table 1, and Supplementary Tables 7–12, will be made available on reasonable request from the corresponding author. Ingenuity pathways analysis (IPA) datasets, supporting Supplementary Tables 7–12 are only available on the PI’s personal account on IPA. UALCAN and cBioPortal data analyzed during the study are publicly available on the cBioPortal and UALCAN databases as described in the figshare data record above.",False,True,True dataset,10.1371_journal.pmed.1004339,doi10.1371_journal.pmed.1004339,"Data Availability Statement: As we are not the owners of the data we are not legally entitled to grant access to the data of the German Pharmacoepidemiological Research Database. In accordance with German data protection regulations, access to the data is granted only to employees of the Leibniz Institute for Prevention Research and Epidemiology – BIPS on the premises of the institute and in the context of approved research projects. Third parties may only access the data in cooperation with the Leibniz Institute for Prevention Research and Epidemiology – BIPS and after signing an agreement for guest researchers. Please contact gepard@leibniz-bips.de for help with this process.",True,True,False dataset,10.1371_journal.pone.0241200,doi10.1371_journal.pone.0241200,Data Availability Statement Data is available from Figshare (doi: 10.6084/m9.figshare.13100225).,True,True,False dataset,10.1088_1361-6501_ad060e,doi10.1088_1361-6501_ad060e,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1186_s12909-021-02802-9,doi10.1186_s12909-021-02802-9,Availability of data and materials All data generated or analysed during this study are included in this submitted article as Appendix I and II.,True,True,False dataset,10.1088_1361-6528_acfa05,doi10.1088_1361-6528_acfa05,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files). Data will be available from 25 May 2023.,False,True,False dataset,10.7554_elife.85542,doi10.7554_elife.85542,"Data availability All data generated or analysed during this study are included in the manuscript and source data files. The pMK33-SAM vector, pLib8 vector, and libraries used in this study are available through DRSC/TRiP Functional Genomics Resources. The following dataset was generated: XiaBViswanathaRHuYMohrSEPerrimonN2023Data from: Pooled genome-wide CRISPR activation screening for rapamycin resistance genes in Drosophila cellsDryad Digital Repository10.5061/dryad.2547d7ww8",False,True,True dataset,10.1073_pnas.2306564120,doi10.1073_pnas.2306564120,"Data, Materials, and Software Availability3C-HTGTS and HTGTS-V(D)J-seq data were processed through published pipelines (http://robinmeyers.github.io/transloc_pipeline/) as described (18). D usage in VHDJH joins was processed via a custom pipeline (https://github.com/Yyx2626/VDJ_annotation/) (19). Productive and non-productive junctions were processed via another pipeline (https://github.com/Yyx2626/VDJ_annotation/) (19). HTGTS-V(D)J-seq, 3C-HTGTS and GRO-seq sequencing data reported in this study are available through GEO (GSE230605) (58). All study data are included in the article and/or SI Appendix. Previously published data were used for this work [GSE151910 (22) and GSE821126 (53)].",True,True,True dataset,10.1371_journal.pone.0283609,doi10.1371_journal.pone.0283609,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1088_2515-7620_ad1063,doi10.1088_2515-7620_ad1063,Data availability statementThe data cannot be made publicly available upon publication because they are owned by a third party and the terms of use prevent public distribution. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1186_s12889-021-11008-z,doi10.1186_s12889-021-11008-z,Availability of data and materials All data generated or analysed during this study are included in this published article and the Additional files.,False,True,False dataset,10.1371_journal.pone.0253540,doi10.1371_journal.pone.0253540,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pclm.0000122,doi10.1371_journal.pclm.0000122,Data Availability Statement Data is provided in the supporting information file.,False,True,False dataset,10.1093_hmg_ddad091,doi10.1093_hmg_ddad091,Data AvailabilityThe data generated for this paper will be available from the corresponding author on reasonable request.,True,True,False dataset,10.1093_nar_gkad439,doi10.1093_nar_gkad439,Data Availability The data underlying this article are available in the article and in its online supplementary material.,False,True,False dataset,10.1371_journal.pdig.0000349,doi10.1371_journal.pdig.0000349,"Data Availability Statement: The questions of this exam cannot be made publicly because they will be used again in future exams. Consequently, the authors cannot share all the AI responses. Access to the study data can be requested by contacting fampop@uantwerpen.be and will be granted as long as the requestor can guarantee that they will not be made publicly and no students will have access to them. As supplementary material, we do provide a datasheet with our raw data excluding the answers and the questions (S1 Data and S2 Data). Individual student results, even anonymised will never be shared as it is impossible to ask permission to all students.",False,True,False dataset,10.1371_journal.pcbi.1011775,doi10.1371_journal.pcbi.1011775,Data Availability Statement: The software “ImportRisk-v1.0.0” to compute the import risk is available under the Zenodo repository https://doi.org/10.5281/zenodo.7852476.,False,True,True dataset,10.1167_jov.23.6.7,doi10.1167_jov.23.6.7,"The configurations and codes for this experiment are available in: Github github.com/Znasif/ColorCalibration, Google Colab colab.research.google.com/drive/1eHDXJPRn3HaeAqcdGbOKHVJSiNBXBCMv.",False,False,True dataset,10.1371_journal.pmed.1003998,doi10.1371_journal.pmed.1003998,Data Availability Statement Data will be available to successful applications for clearly specified research projects following the MRC CTU at UCL standard data sharing processes: https://www.mrcctu.ucl.ac.uk/our-research/other-research-policy/data-sharing/ Discussion with the trial team is encouraged to determine whether the relevant data to support the application are available. Email to: mrcctu.datareleaserequest@ucl.ac.uk.,False,True,False dataset,10.7554_elife.86784,doi10.7554_elife.86784,Data availabilityCryo-EM maps and atomic coordinates for the GC-C-Hsp90-Cdc37 complex have been deposited in the EMDB (EMD-29523) and PDB (8FX4). Material availability: The plasmids used in this study are uploaded in (Supplementary file 1).,False,True,True dataset,10.1038_s41467-022-32646-w,doi10.1038_s41467-022-32646-w,Data availability The data that support the findings in this study are available from the corresponding authors upon reasonable request. Source data are provided with this paper. Code availability All code to reproduce the main simulation results can be found on GitHub (https://github.com/babaf/motor-adaptation-local-vs-input.git).,False,True,True dataset,10.1371_journal.pone.0219089,doi10.1371_journal.pone.0219089,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1093_pnasnexus_pgad113,doi10.1093_pnasnexus_pgad113,Data availability The processed experimental files for all single-cell data sets used in this study are available on Zenodo at https://doi.org/10.5281/zenodo.7474099; Table 1 lists the Gene Expression Omnibus (GEO) accession numbers for each data set. The saved model weights for DELAY are available on Zenodo at https://doi.org/10.5281/zenodo.7474115. All experimental logs from this study are available at https://tensorboard.dev/experiment/RBVBetLMRDiEvO7sBl452A. We have provided an open-source implementation of DELAY in PyTorch with listed requirements and documentation at https://github.com/calebclayreagor/DELAY.,False,True,True dataset,10.1371_journal.pone.0294847,doi10.1371_journal.pone.0294847,Data Availability Statement: All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1371_journal.pone.0243922,doi10.1371_journal.pone.0243922,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1017_jfm.2023.90,doi10.1017_jfm.2023.90,Data availability statement. The codes used in this study are openly available in GitHub at https://github. com/Maplenormandy/qg-edgeofchaos.,False,True,True dataset,10.1371_journal.ppat.1011346,doi10.1371_journal.ppat.1011346,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0269555,doi10.1371_journal.pone.0269555,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10,doi10,Data availability The microbial growth data generated in this study are provided in the Supplementary Table S2. Code availability The model code is deposited on GitHub (https://github.com/LevineLab/POMmodel) and citable using https://doi.org/10.5281/zenodo.6015020.,False,True,True dataset,10.1073_pnas.1913292117,doi10.1073_pnas.1913292117,"Data Availability Statement. All data discussed in the paper are available to readers through Harvard Dataverse, https://doi.org/10.7910/DVN/RFGT4S.",False,True,False dataset,10.1371_journal.pntd.0010231,doi10.1371_journal.pntd.0010231,Data Availability Statement De-identified data is available online via the COR-NTD Research Dataverse: https://dataverse.unc.edu/dataset.xhtml?persistentId=doi:10.15139/S3/WOYRUW.,False,True,False dataset,10.1371_journal.pmed.1002934,doi10.1371_journal.pmed.1002934,Data Availability Statement A minimal dataset and STATA DO file are included as Supporting information files to enable readers to replicate our analysis.,False,True,False dataset,10.1088_1361-6552_ad001a,doi10.1088_1361-6552_ad001a,Data availability statementThe data cannot be made publicly available upon publication due to legal restrictions preventing unrestricted public distribution. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pone.0296688,doi10.1371_journal.pone.0296688,Data Availability Statement: All data files are available from the OpenBU database (https://hdl.handle.net/2144/45321).,False,True,False dataset,10.1371_journal.pcbi.1007117,doi10.1371_journal.pcbi.1007117,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1088_1402-4896_ad16b7,doi10.1088_1402-4896_ad16b7,Data availability statementThe data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1016_j.isci.2021.102204,doi10.1016_j.isci.2021.102204,Data and code availability The data that support the findings of this study and sequences were submitted to the NCBI sequence read archive (SRA) under BioProject ID: PRJNA633714. Code for analysis is available on github repository: https://github.com/galud27.,False,True,True dataset,10.1371_journal.pone.0253387,doi10.1371_journal.pone.0253387,Data Availability Statement Raw genome sequencing data for 23 strains are available from the NCBI with BioProject PRJNA683613.,False,True,False dataset,10.1038_s41467-023-39652-6,doi10.1038_s41467-023-39652-6,"Data availabilityAll demographic information and metadata used in this study for brain tissue analysis are available in the supplementary data files. The resulting data from all relevant limma, GSEA, and GSVA analyses for brain and blood are also included in the supplementary data files. Raw data generated from this study and gene expression values for brain RNA-seq data used in this study have been deposited in the GEO database under the accession code GSE205450 (link). Raw data and individual-level metadata used for blood transcriptome analysis in this study are available for downloading from PPMI (https://www.ppmi-info.org/access-data-specimens/download-data) through Laboratory of Neuro Imaging (LONI) Image Data Archive (IDA). For PDBP, data are available for downloading from AMP PD (https://www.amp-pd.org). To access individual-level data, users need to complete a data use agreement and submit an online application. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE80 partner repository with the dataset identifier PXD042154 (link). Source data are provided with this paper.Code availabilityCustom codes used in this study are available on GitHub and can be accessed at https://github.com/carynhale/PD_RNAseq.",False,True,True dataset,10.1088_1402-4896_ad0a2d,doi10.1088_1402-4896_ad0a2d,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1074_jbc.ra120.015632,doi10.1074_jbc.ra120.015632,"Data availability All data discussed are presented in the article. Any analysis tools from the article will be shared upon request to the corre- sponding author: Christopher M. Yengo, cmy11@psu.edu.",False,True,False dataset,10.1371_journal.ppat.1011456,doi10.1371_journal.ppat.1011456,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1007_s40993-022-00395-w,doi10.1007_s40993-022-00395-w,"Data availability The datasets generated during and/or analysed during the current study are available in the GitHub repository, triangularModularCurves.",False,True,True dataset,10.1111_disa.12560,doi10.1111_disa.12560,Data availability statement Research data are not shared.10,False,True,False dataset,10.1186_s13015-023-00235-1,doi10.1186_s13015-023-00235-1,"Availability of data and materialsAll data, scripts, and instructions for reproducing the results presented are available at https://github.com/matsengrp/gp-benchmark-1. Readers can independently reproduce the MrBayes posterior samples, branch length estimates on the DS datasets for both VBPI and GP, and rerun GP on the Makona dataset. We note that MrBayes posterior samples on each dataset required multiple days. The repository includes copies of the posterior samples for reproduction without requiring the full MrBayes runs. Additionally, the repository includes copies of the raw output after VBPI and GP estimation used for figures and results presented in this manuscript.",False,True,True dataset,10.1371_journal.pone.0229102,doi10.1371_journal.pone.0229102,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.3390_ijms241210379,doi10.3390_ijms241210379,Data Availability StatementData are available upon request.,False,True,False dataset,10.3390_fluids7040122,doi10.3390_fluids7040122,Data Availability Statement: Not applicable.,False,True,False dataset,10.1371_journal.pone.0246344,doi10.1371_journal.pone.0246344,"Data Availability Statement The data is restricted as it concerns sensitive and potentially identifying patient information in a limited population within a single institute. Ethical consent was obtained from the METC Utrecht (Medical Ethical Committee Utrecht) and the need for informed consent was waived for this retrospective observational part of the PEARL study (METC research file NL72115.041.19 version 2, METC-protocol number 19/783, Netherlands trial register number NL8192). Thus patients did not provide informed consent for data to be made public in this manner. However, data can be shared with interested researchers upon request via direct contact with the principle investigators, or via Harm van Tinteren (contact via H.vanTinteren@prinsesmaximacentrum.nl).",False,True,False dataset,10,doi10,"Data availability statement No data are available. The data are pseudonymised according to national (Swedish) and European Union legislation, and cannot be anonymised and published in an open repository. Participants in the trial have not consented for their data to be shared with other researchers for research purposes.",False,True,False dataset,10.1371_journal.pone.0216465,doi10.1371_journal.pone.0216465,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0285980,doi10.1371_journal.pone.0285980,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10,doi10,"Data availability Since the datasets used in this work contain patient data, these cannot be made generally available to the public due to privacy concerns. Code availability The code for the AngioNet architecture and examples of synthetic angiograms are available at https://github. com/kritiyer/AngioNet. This code is licensed under a Polyform Noncommercial license.",False,True,True dataset,10.1038_s41422-023-00790-7,doi10.1038_s41422-023-00790-7,"Data availability All the data required for the understanding and critical evaluation of this study are provided in the manuscript and supplementary materials. RNA-seq and 16S rDNA sequencing data are available from the SRA database using accession numbers PRJNA645758 and PRJNA645764, respectively.",False,True,True dataset,10.1371_journal.pone.0251901,doi10.1371_journal.pone.0251901,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1038_s41564-023-01447-2,doi10.1038_s41564-023-01447-2,"Data availabilityThe protein identification number in the NCBI database for each enzyme characterized is as follows: L. crispatus PulA (EEU28204.2), L. iners PulA (EFQ51965.1), G. vaginalis PulA (EPI56559.1), M. mulieris PulA (EEZ90738.1), P. bivia PulA (WP_061450340.1), P. bivia GH13 (WP_036862728.1). The L. crispatus C0176A1 (PulA−) genome can be found under accession number JAEDCG000000000. The metagenomic and metatranscriptomic datasets used in this study can be found under Bioproject PRJNA797778. The proteomics data from this study can be accessed in the PRIDE database using accession code PXD042917. Protein domain annotations were from the Pfam and CAZy databases. All data that support the findings of this study are available in a data repository at synapse.org and can be accessed at https://www.synapse.org/#!Synapse:syn51422003. Source data are provided with this paper.",False,True,True dataset,10.1371_journal.pone.0227132,doi10.1371_journal.pone.0227132,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pone.0247289,doi10.1371_journal.pone.0247289,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1186_s40168-023-01532-y,doi10.1186_s40168-023-01532-y,Availability of data and materials The sequencing data were deposited in the SRA database under the accession number PRJNA828340 and PRJNA906637.,False,True,False dataset,10.1186_s12913-019-3983-7,doi10.1186_s12913-019-3983-7,Availability of data and materialsThe data that support the findings of this study are available from Centers for Medicare & Medicaid Services. Medicare Current Beneficiary Survey (MCBS). https://www.cms.gov/Research-Statistics-Data-and-Systems/Research/MCBS/.,False,True,False dataset,10.1002_advs.202102414,doi10.1002_advs.202102414,Data Availability Statement The data that support the findings of this study are available from the corresponding author upon reasonable request.,False,True,False dataset,10.1186_s12939-020-01197-1,doi10.1186_s12939-020-01197-1,Availability of data and materialsThe data used in this study are available at http://ghdx.healthdata.org/record/bolivia-health-and-nutrition-assessment-survey-2012,False,True,False dataset,10.1371_journal.ppat.1011163,doi10.1371_journal.ppat.1011163,Data Availability All mass spectrometry data have been deposited on the Pride proteome exchange public repository. Project Name: KSHV ORF18 TurboID in human iSLK cell lines Project accession: PXD039694 Project DOI: 10.6019/PXD039694.,True,True,False dataset,10.1186_s12889-023-15780-y,doi10.1186_s12889-023-15780-y,"Data Availability Due to the nature of this research, participants of this study did not agree for their data to be shared publicly (as participants individual privacy could be compromised), so supporting data is not available. Please contact liz.saunders@research.uwa.edu.au for further details.",False,True,False dataset,10.1371_journal.pclm.0000339,doi10.1371_journal.pclm.0000339,"Data Availability Statement: Data are publicly available for download from the following refereed sources. 1. Data on GDP Percapita, LDC and Life Expectancy: World Bank. World Development Indicators 2023. The World Bank; 2023 March 01. https://databank.worldbank.org/source/world-development-indicators 2. Data on Temperature and Rainfall. World Bank. The Climate Change Knowledge Portal (CCKP) 2023. The World Bank; 2023 March 30. https://climateknowledgeportal.worldbank.org/.",False,True,False dataset,10.1016_j.molcel.2023.02.026,doi10.1016_j.molcel.2023.02.026,"Data and code availability Genomics data (CUT&Tag, ATAC-seq, and RNA-seq) have been deposited at GEO under accession number GSE212357 and are publicly available as of the date of publication. This paper also analyzes existing, publicly available data (GSE181062 and GSE181064 key resources table). Unprocessed blot images have been deposited in Mendeley (Mendeley data: https://doi.org/10.17632/7msw2d62r6.1). See Key Resources Table for details.",False,True,True dataset,10.1017_s2633903x23000028,doi10.1017_s2633903x23000028,Data Availability Statement. Replication data and code can be found at https://github.com/yunpeng-shi/fast-cryoEM-PCA.,False,True,True dataset,10.1021_acssynbio.2c00587,doi10.1021_acssynbio.2c00587,Data Availability Statement All data generated or analyzed during this study are included in the manuscript and supporting files.,False,True,True dataset,10.1371_journal.pone.0215898,doi10.1371_journal.pone.0215898,"Data Availability Statement The Boston University Medical Campus and Boston Medical Center Institutional Review Board concurs with the rationale for restricting the de-identified data due to ethical concerns. Although the data could be de-identified, the unique subject population that was enrolled in the study and the relatively small sample size indicate that there would be a potential large risk of deductive disclosure. The data itself includes responses to questions that ask about sensitive topics such as work and relationships (both family and romantic). Given the risk for deductive disclosure, data is available upon request by contacting (BU/BMC IRB’s email: medirb@bu.edu).",False,True,False dataset,10.3390_ijms24119305,doi10.3390_ijms24119305,Data Availability Statement All data are available in the main manuscript or supplementary materials and additional data and reagents can be obtained by written request to rsh@uthscsa.edu.,False,True,True dataset,10,doi10,"Availability of data and materials The datasets supporting the conclusions of this article are available in the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) database repository, https://img.jgi.doe.gov/cgi-bin/m/main.cgi. List of permalinks pointing to JGI- IMG webpages for each SAG generated for this study is included within addi- tional tables of this article (Supp. Table 2). In addition to provide assembled sequences, all metadata (samples location and depth of isolation, sequencing procedure and technology, bioinformatic processing and quality control, and genomic statistics) associated with SAGs are available there. Additional genomes used to build pangenome have been retrieved from NCBI, ftp://ftp. ncbi.nlm.nih.gov/genomes/genbank/bacteria/. Metagenome and metatran- scriptome data are available in the NCBI SRA projects PRJNA352737 and PRJNA358725. All other data products associated with this study are accessible online: population genomes, https://doi.org/10.6084/m9.figshare.14573751. v1, and Anvi’o databases, https://doi.org/10.6084/m9.figshare.14573046.v1.",False,True,True dataset,10.1088_1361-6498_ad115a,doi10.1088_1361-6498_ad115a,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.3390_s21248442,doi10.3390_s21248442,Data Availability StatementThe datasets generated and analyzed during the current study are not publicly available due to the general data protection regulations but will be shared on reasonable request using a safe platform by the corresponding author.,False,True,False dataset,10.1088_1367-2630_ac836b,doi10.1088_1367-2630_ac836b,Data availability statement No new data were created or analysed in this study.,False,True,False dataset,10.1007_s00127-021-02039-3,doi10.1007_s00127-021-02039-3,"Availability of data and material The datasets generated and/or analyzed for the current study are not publicly available due to legal and ethical regulations, but may be made available upon request to data management of the Generation R Study (datamanagementgenr@erasmusmc.nl), in accordance with the local, national, and European Union regulations.",False,True,False dataset,10.1038_s41598-020-78032-8,doi10.1038_s41598-020-78032-8,Data availability The data that support the findings of this study are available on request from the corresponding author.,False,True,False dataset,10.1021_acssynbio.3c00148,doi10.1021_acssynbio.3c00148,Data Availability StatementAll data is included in the Supporting Information and data file.,False,True,False dataset,10,doi10,Data Availability Statement: The data presented in this study are available on request from the corresponding author. The data are not publicly available due to privacy.,False,True,False dataset,10.1371_journal.pwat.0000226,doi10.1371_journal.pwat.0000226,Data Availability Statement: The in-situ data used in this study was acquired from the following open-access publication: https://www.sciencedirect.com/science/article/pii/S2352340923002664?via%3Dihub This data can be downloaded directly from the following public repository: https://dataverse.ird.fr/dataset.xhtml?persistentId=doi:10.23708/NKQDNB.,False,True,False dataset,10.1016_j.isci.2023.106601,doi10.1016_j.isci.2023.106601,Data and code availability Additional Supplemental Items are available from Mendeley Data at https://data.mendeley.com/datasets/h6rn55h86x/1. All data reported in this paper will be shared by the lead contact upon request. This paper does not report original code. Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.,False,True,True dataset,10,doi10,Data Availability Statement: The full reconstruction of Bombus thick filament as well as the segmented flightin density have been deposited in EMDB under accession code EMD-28208. The atomic model of Bombus flightin is deposited in the PDB under the entry 8EW5.,False,True,True dataset,10.1038_s41598-020-74100-1,doi10.1038_s41598-020-74100-1,"Data availability Te data that support the fndings of this study are available in the Gene Expression Omnibus (GEO) database at: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?token=epajoakqppkvbub&acc=GSE85307 reference number GSE85307. Additional data were derived from the following resources available in the public domain of GEO database: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9984, https://www.ncbi.nlm.nih.gov/geo/ query/acc.cgi?acc=GSE75010, and https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE142974.",False,True,True dataset,10.1088_2752-664x_ad04e3,doi10.1088_2752-664x_ad04e3,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://gcrg.sdsu.edu/.,False,True,False dataset,10,doi10,"Data availability POM, hydrography, and metagenomes from Bio-GO-SHIP cruises used in this study are publicly available28,73. Nutrient stress data of phytoplankton can be accessed from the original publication cited in the main text31. GLODAP version2.2016b data is publicly available (https://doi.org/10.5194/essd-8-297-2016). The model output from the CEMS2 Large Ensemble Simulation is available here (https://doi.org/10.26024/kgmp-c556). Code availability All codes (data manipulation, analyses, figures, and tables) can be downloaded from the GitHub repository https://github.com/tanio003/CNPGlobal_paper_repo/tree/ CommsEarthEnv. When using the data or code from this project, please cite https://doi. org/10.5281/zenodo.7076407.",False,True,True dataset,10,doi10,"Availability of data and materials The single-cell raw and processed data generated in this study is publicly available on GEO, with accession number GSE180697 [66]. The codes generated during this study are publicly available at https://github.com/SDTCCPMed/DigiTwin_framework [67]. The datasets used for reference construction are publicly available in BioGPS (biogps.org/downloads/), Human U133A/ GNF1H Gene Atlas [34], and upon request from the authors of [20]. The bulk cell-profling datasets for meta-analysis can be found on GEO, GSE75214 [40], and GSE32924 [41]. The DEGs based on single-cell data for meta-analysis were downloaded from [46], and the processed single cell data for meta-analysis can be found on EMBL-EBI, E-MTAB-8901 [47].",False,True,True dataset,10.1186_s13054-020-03210-z,doi10.1186_s13054-020-03210-z,Availability of data and materialsNot applicable.,False,True,False dataset,10.1371_journal.pone.0246437,doi10.1371_journal.pone.0246437,Data Availability Statement All relevant data are within the manuscript and its Supporting information files.,False,True,True dataset,10.1088_1361-6668_acff24,doi10.1088_1361-6668_acff24,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1038_s41598-023-33920-7,doi10.1038_s41598-023-33920-7,"Data availabilityThe datasets used in this study were obtained from two public datasets: the Autism Brain Imaging Data Exchange II (ABIDE-II) and Attention Deficit Hyperactivity Disorder (ADHD-200); and from two datasets that required authorization: Adolescent Brain Cognitive Development (ABCD) and Brazilian High-Risk Cohort Study (BHRCS). ADHD-200 and ABIDE-II can be downloaded from the NeuroImaging Tools & Resource Collaboratory Image Repository, after free registering and login, from the following download links, respectively: https://www.nitrc.org/ir/app/template/XDATScreen_report_xnat_projectData.vm/search_element/xnat:projectData/search_field/xnat:projectData.ID/search_value/adhd_200, and https://www.nitrc.org/ir/app/template/XDATScreen_report_xnat_projectData.vm/search_element/xnat:projectData/search_field/xnat:projectData.ID/search_value/ABIDE_II. For ABCD and BHRCS datasets, application and consortium approval of an NDA form are required. The data were collected and made publicly available according to the guidelines, and approval was provided by the local ethics committee for each project. Detailed information on these datasets and their acquisition parameters can be retrieved from ABIDE-II (http://fcon_1000.projects.nitrc.org/indi/abide/abide_II.html), ADHD-200 (http://fcon_1000.projects.nitrc.org/indi/adhd200/), ABCD (https://nda.nih.gov/abcd), and BHRCS (https://osf.io/ktz5h/wiki/home/).",True,True,True dataset,10.1073_pnas.2221103120,doi10.1073_pnas.2221103120,"Data, Materials, and Software Availability 3D structure data have been deposited in [Protein Data Bank (PDB)] (8FBY and 8FCF) for PLVAP CC1 crystal forms I and II, respectively (92, 93).",False,True,True dataset,10.1371_journal.pdig.0000467,doi10.1371_journal.pdig.0000467,Data Availability Statement: The dataset of unimpaired gait is available from http://bytom.pja.edu.pl/projekty/hm-gpjatk. The stroke and PD datasets contain videos with identifiable information and are therefore not available. Code for our workflow is available at https://github.com/janstenum/GaitAnalysis-PoseEstimation/tree/Multiple-Perspectives.,False,True,True dataset,10.1371_journal.pone.0281837,doi10.1371_journal.pone.0281837,Data Availability Statement The data underlying the results presented in the study are available from http://opendata.camara.cl https://github.com/dimoralesb/rollcall_votes_chile,False,True,True dataset,10.7554_elife.85492,doi10.7554_elife.85492,"Data availabilityThe new software presented in this manuscript (the ADMIXTOOLS 2 R package) is freely available at https://github.com/uqrmaie1/admixtools (copy archived at Maier et al., 2022), along with a detailed manual at https://uqrmaie1.github.io/admixtools/. The ancient human genome newly reported in this manuscript (Supplementary file 2) is freely available at the European Nucleotide Archive in the form of an alignment of reads to the hg19 human reference genome (project accession number PRJEB58199). Published software packages re-used in this manuscript are available at: https://bitbucket.org/nygcresearch/treemix/src/master/ (TreeMix, Pickrell and Pritchard, 2012) and at https://github.com/DReichLab/AdmixTools (David Reich Lab, 2023, ADMIXTOOLS, Patterson et al., 2012). Published archaeogenetic datasets re-analyzed in this manuscript were kindly shared by the corresponding authors of the following publications upon our requests: Bergström et al., 2020; Lazaridis et al., 2014; Librado et al., 2021; Lipson et al., 2020b; Shinde et al., 2019; Sikora et al., 2019; Wang et al., 2021; Hajdinjak et al., 2021. Various statistics for these re-used datasets are summarized in Supplementary file 1.",False,True,True dataset,10.1186_s12917-019-1890-0,doi10.1186_s12917-019-1890-0,"Availability of data and materialsThe datasets analyzed during the current study are not publicly available due to sharing agreements. These were necessary for the transfer of sequences and data from the diagnostic laboratories to the LEMP, to analyze data and report results.",False,True,False dataset,10.3390_molecules28020474,doi10.3390_molecules28020474,Data Availability Statement: Not applicable.,False,True,False dataset,10.1371_journal.pone.0238693,doi10.1371_journal.pone.0238693,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1371_journal.pone.0237815,doi10.1371_journal.pone.0237815,Data Availability Statement All relevant data are within the manuscript and its Supporting Information file.,False,True,True dataset,10.1371_journal.pntd.0008605,doi10.1371_journal.pntd.0008605,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1016_j.celrep.2023.112412,doi10.1016_j.celrep.2023.112412,"Data and code availability This paper analyzes existing, publicly available data. The accession numbers for the datasets are listed in the key resources table. All original code has been deposited at https://github.com/nitzanlab/pareto_interactions_py and https://github.com/miriadler/pareto_interactions and is publicly available as of the date of publication. DOIs are listed in the key resources table. All data files used in this paper are deposited at https://zenodo.org/record/7569404#.ZBwyr-xByWB. Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.",False,True,True dataset,10.1155_2020_3938640,doi10.1155_2020_3938640,Data AvailabilityThe clinical data used to support the findings of this study are included within the article.,False,True,False dataset,10.7554_elife.86852,doi10.7554_elife.86852,"Data availability All data and code are available in the GitHub repository at https://github.com/jbloomlab/barcoded_flu_ pdmH1N1, copy archived at Bloom, 2023. The analysis can be reproduced by running the Snakemake pipeline and final analysis notebook according to the instructions at https://github.com/jbloomlab/ barcoded_flu_pdmH1N1/blob/main/README.md. Key output files are hosted at the following loca- tions. All raw sequencing files are available on GEO under the accession number GSE214938. The single-cell RNA sequencing cell-gene matrix is also available on GEO under the accession number GSE214938. An integrated CSV produced by the Snakemake pipeline with cell barcodes, viral gene expression, viral genome sequence, and viral barcode frequencies is available at https://github.com/ jbloomlab/barcoded_flu_pdmH1N1/blob/main/results/viral_fastq10x/all_samples.csv. The final CSV file with progeny contribution measurements, viral gene expression, and viral mutations (when avail- able) for the infected cells with complete measurements is available at https://github.com/jbloomlab/ barcoded_flu_pdmH1N1/blob/main/results/viral_fastq10x/all_samples_complete_measurements_ cells_data.csv. The following dataset was generated: Author(s) Year Dataset title Dataset URL Database and Identifier Bacsik DJ, Dadonaite B, Butler A, Greaney AJ, Heaton NS, Bloom JD 2022 Influenza virus transcription and progeny production are poorly correlated in single cells https://www.ncbi. nlm.nih.gov/geo/ query/acc.cgi?acc= GSE214938 NCBI Gene Expression Omnibus, GSE214938",False,True,True dataset,10.1038_s41467-023-37169-6,doi10.1038_s41467-023-37169-6,"Data availability The data that support this study are available from the corresponding authors upon request. Cryo-EM maps have been deposited in the Electron Microscopy Data Bank 9EMDB under accession codes EMD-27432 (LepRD1–D7 receptor complex), EMD-27433 (LepRD3–D7 receptor complex), and EMD-27434 (LepR focused interaction). Atomic coordinates have been deposited in the Protein Data Bank (PDB) under accession codes 8DH8 (LepRD1–D7 receptor complex), 8DH9 (LepRD3–D7 receptor complex), and 8DHA (LepR focused interaction). Source data underling Fig. 4b, d, f, g, i, and Supplementary Fig. 8b–e are provided in the Source Data File. Source data are provided with this paper.",False,True,True dataset,10.1371_journal.pone.0297957,doi10.1371_journal.pone.0297957,Data Availability Statement: All relevant data are within the manuscript.,False,True,False dataset,10.1073_pnas.2304730120,doi10.1073_pnas.2304730120,"Data, Materials, and Software AvailabilityAll study data are included in the article and/or SI Appendix.",True,True,True dataset,10.1186_s12859-023-05306-z,doi10.1186_s12859-023-05306-z,"Availability of data and materials All data analyzed during this study are included in these published articles [10, 11, 18] and their supplementary information files. The BBUM fitting and significance-calling algorithm is available as an R package at https://github.com/wyppeter/bbum. Other code used for this work, including data analyses, simulations, and data visualization, is available at https://github.com/wyppeter/BBUM-TDMD_2022.",False,True,True dataset,10.1371_journal.pone.0247551,doi10.1371_journal.pone.0247551,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.3390_biom13060949,doi10.3390_biom13060949,Data Availability Statement This study did not report any data not shown in the manuscript.,False,True,False dataset,10,doi10,Data availability The sequencing data have been uploaded to SRA (Sequence Read Archive) under BioProject accession PRJNA63980,False,True,False dataset,10.1186_s12872-020-01654-3,doi10.1186_s12872-020-01654-3,"Availability of data and materials Due to restrictions related to Danish law and protecting patient privacy, the combined set of data used in this study can only be made available through a trusted third party, Statistics Denmark. This state organisation holds the data used for this study. University-based Danish scientific organisations can be authorized to work with data within Statistics Denmark and such organisation can provide access to individual scientists inside and outside of Denmark. Data are available upon request to authorized scientists by contacting Statistics Denmark: http://www.dst.dk/en/OmDS/organisation/TelefonbogOrg.aspx?kontor=13&tlfbogsort=sektion or the Danish Data Protection Agency: https://www.datatilsynet.dk/english/the-danish-data-protection-agency/contact/. More information regarding data access is available at https://www.dst.dk/en/TilSalg/Forskningsservice.",False,True,False dataset,10.1371_journal.pone.0285166,doi10.1371_journal.pone.0285166,"Data Availability Statement All data are included in this article, with the exception of raw RNAseq data, which can be accessed in the NCBI Genome Expression Omnibus public database through GEO Series accession no. GSE150805.",False,True,False dataset,10.1038_s41598-021-87992-4,doi10.1038_s41598-021-87992-4,Data availability The datasets generated during and/or analyzed during the current study are not publicly available due to funding agency agreement and intellectual properties but are available from the corresponding author on reasonable request with permission of funding agency.,True,True,False dataset,10.1371_journal.pgen.1011178,doi10.1371_journal.pgen.1011178,Data Availability Statement: Bacterial small RNA sequencing data are available at NCBI Bioproject PRJNA1062118. The numerical data for all the plots in all the figures have been included in S1 Data.,False,True,False dataset,10.1038_s41467-023-38934-3,doi10.1038_s41467-023-38934-3,"Data availability The 3D cryo-EM density maps generated in this study have been deposited in the Electron Microscopy Data Bank (EMDB) under accession numbers EMD-28577 (DGAT1-T863 complex) and EMD-28594 (DGAT1-DGAT1IN1 complex). The coordinates have been deposited into the Protein Data Bank (PDB) with accession numbers 8ESM (T863 bound) and 8ETM (DGAT1IN1 bound). This study also cited the published structure of human DGAT1 6VYI and EMD-21461, the oleoyl CoA bound state 6VZ1 and EMD-21481, and the human ACAT1 structure 6VUM and EMD-21390. Source data are provided in this paper.",False,True,True dataset,10.1038_s41598-020-69969-x,doi10.1038_s41598-020-69969-x,Data availability The datasets generated and analysed during the current study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1088_1361-6382_acfd00,doi10.1088_1361-6382_acfd00,Data availability statementThe data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1038_s41467-023-37702-7,doi10.1038_s41467-023-37702-7,"Data availability The data that support this study are available from the corresponding authors upon request. Cryo-EM maps have been deposited in the Electron Microscopy Data Base (EMDB) under accession codes EMD-27148 (Merged Lysolipid1A,2B,3C), EMD-27149 (Ligand-free), EMD-27150 (Lysolipid1A), EMD-27151 (Lysolipid1B), EMD-27152 (Lysolipid2B), and EMD-27153 (Lysolipid3C). The atomic coordinates have been deposited in the Protein Data Bank (PDB) under accession codes 8D2S (Merged Lysolipid1A,2B,3C), 8D2T (Ligand-free), 8D2U (Lysolipid1A), 8D2V (Lysolipid1B), 8D2W (Lysolipid2B), and 8D2X (Lysolipid3C).",False,True,True dataset,10.1371_journal.pone.0263296,doi10.1371_journal.pone.0263296,Data Availability Statement All relevant data are within the paper and its Supporting information files. The whole trajectory files generated in the MD simulation have been deposited in the Zenodo server under digital object identifier: 10.5281/zenodo.5533040.,False,True,True dataset,10.1126_science.adg6518,doi10.1126_science.adg6518,Data and materials availability: The plasmids used in this study are available through AddGene (depositor: David R. Liu). DNA sequencing files can be accessed using the NCBI SRA (SUB# PRJNA871232). All data are available in the main text or the supplementary materials.,False,True,False dataset,10.1371_journal.pone.0286527,doi10.1371_journal.pone.0286527,Data Availability Statement All relevant data are within the paper and its Supporting information files.,False,True,False dataset,10.1371_journal.pone.0255193,doi10.1371_journal.pone.0255193,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10,doi10,Data availability The data that support the findings of this study are available from the corresponding authors on reasonable request. Source data are provided with this paper.,False,True,False dataset,10.1186_s12985-019-1252-3,doi10.1186_s12985-019-1252-3,Availability of data and materialsThe datasets used and/or analyzed during the current study are available from the corresponding author on request.,False,True,False dataset,10.1186_s12872-021-02125-z,doi10.1186_s12872-021-02125-z,Availability of data and materials The datasets used and analyzed during the current study are available from the principal investigator of CCC-ACS on reasonable request.,False,True,False dataset,10.1001_jamanetworkopen.2023.6431,doi10.1001_jamanetworkopen.2023.6431,Data Sharing Statement: See Supplement 2.,False,True,False dataset,10.1088_1361-6501_ad060f,doi10.1088_1361-6501_ad060f,Data availability statementThe data cannot be made publicly available upon publication because they contain commercially sensitive information. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1088_1361-6528_ad0243,doi10.1088_1361-6528_ad0243,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1073_pnas.2302325120,doi10.1073_pnas.2302325120,"Data, Materials, and Software Availability Cryo-EM density maps and atomic coordinates of the hSlo1 channel in total membrane vesicles (Ca2+-free and EDTA-free), in plasma membrane vesicles, and in digitonin (Ca2+-free and EDTA-free) have been deposited in the Electron Microscopy Data Bank under accession codes EMD-40038 (60), and EMD-40044 (61), EMD-40045 (62) and in the Protein Data Bank under accession codes 8GH9 (63), 8GHF (64), and 8GHG (65), respectively.",False,True,True dataset,10.1371_journal.pone.0285841,doi10.1371_journal.pone.0285841,Data Availability Statement The data underlying the results presented in the study are available from Swedish national dataservice: https://snd.gu.se/en/describe-and-share-data.,False,True,False dataset,10.1371_journal.pmed.1002902,doi10.1371_journal.pmed.1002902,Data Availability Statement Data cannot be shared publicly because consent was not obtained for this. Data are available from the Ethics Review Board in Sweden (https://etikprovningsmyndigheten.se/) for researchers who meet the criteria for access to confidential data.,False,True,False dataset,10.1038_s41565-023-01372-9,doi10.1038_s41565-023-01372-9,Data Availability The Cancer Genome Atlas (http://cancergenome.nih.gov) and Matrisome (http://matrisomeproject.mit.edu/) are open access resources. The datasets and codes generated and analysed during the current study are available in the Zenodo repository (https://zenodo.org/deposit/7686811). All data that support the findings of this study are available within the Article and its Supplementary Information or from the corresponding author upon reasonable request. Source data are provided with this paper.,False,True,True dataset,10.1155_2019_1872536,doi10.1155_2019_1872536,Data AvailabilityThe data used to support the findings of this study are available from the corresponding author upon request.,True,True,False dataset,10.1186_s12871-021-01333-6,doi10.1186_s12871-021-01333-6,Availability of data and materials The datasets used and/or analyzed during the current study are not publicly available due to patient privacy and institutional policy but are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pone.0267550,doi10.1371_journal.pone.0267550,"Data Availability Statement All relevant data are within the manuscript and its Supporting Information files. We have clearly described all of the statistical tests used as well as which functions in R were used. Furthermore, we provide supplementary files that include all the raw data from the surveys (S3), all estimates from generalized linear mixed models (S2), and the R scripts used to analyze the data (S4) so that anyone interested can re-run the analyses if they wish.",False,True,True dataset,10.1371_journal.pone.0223212,doi10.1371_journal.pone.0223212,Data Availability Statement Supplementary material for this article is available online. RNA sequencing data are deposited into the GEO database with GEO accession number GSE136234. All other data generated by the authors are presented in the paper.,True,True,False dataset,10.1371_journal.pone.0228975,doi10.1371_journal.pone.0228975,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10,doi10,Availability of data and materials Links to the datasets generated and/or analysed during the current study can be found in Table 2. Code to replicate and extend this work can be found at https://github.com/AbigailJ32/The-persistent-homology-of-genealogical-networks.,False,True,True dataset,10.1088_1361-6382_ad0a19,doi10.1088_1361-6382_ad0a19,Data availability statementThe data cannot be made publicly available upon publication because no suitable repository exists for hosting data in this field of study. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1371_journal.pone.0283829,doi10.1371_journal.pone.0283829,"Data Availability Statement The data used for this manuscript are available upon request from the ethics committee of Arsi University College of Health Science and Medicine (pr.arsiu@arsiun.edu.et). Because the dataset file contains personal information, it may not be ethical to publicly deposit the data.",False,True,True dataset,10.1088_1748-9326_ad0d3b,doi10.1088_1748-9326_ad0d3b,Data availability statementThe data that support the findings of this study are openly available at the following URL/DOI: https://doi.org/10.5281/zenodo.8322973.,False,True,False dataset,10.1242_jcs.261100,doi10.1242_jcs.261100,"Data availability Mass spectrometry data, as well as spreadsheets with all derived values, are available from ProteomeXchange (http://www.proteomexchange.org) using the accession number PXD038234; information conforming to Minimal Information About a Proteomics Experiment (MIAPE) standards (Taylor et al., 2007) was included in the submission.",False,True,False dataset,10.1371_journal.pone.0288068,doi10.1371_journal.pone.0288068,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1186_s40168-023-01517-x,doi10.1186_s40168-023-01517-x,"Availability of data and materials Metagenome, metatranscriptome, and MAG sequence data are available from the European Nucleotide Archive (accession PRJEB52999). Supporting environmental data is also available as Zenodo repository (https://doi.org/10.5281/zenodo.7656261).",True,True,False dataset,10.1371_journal.pone.0217131,doi10.1371_journal.pone.0217131,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1088_1402-4896_ad137d,doi10.1088_1402-4896_ad137d,Data availability statementAll data that support the findings of this study are included within the article (and any supplementary files).,False,True,False dataset,10.1371_journal.pone.0234902,doi10.1371_journal.pone.0234902,"Data Availability Statement Data is provided with supporting information file. Please refer S1 File. All python source code, trained model, and test images are available on Github web site: https://github.com/climyth/VFbySD-OCT (DOI: 10.5281/zenodo.3757702). The training images are available from the first (climyth@naver.com) or corresponding author (alertlee@naver.com) on reasonable request. The provided data must be used for only research purpose and should not be shared with other unauthorized institutions. Data will be stored in our research NAS (network attached storage) and cloud storage for backup purpose up to December 2022, after which it will be discarded as required by local regulations. Although the authors cannot make their study’s data publicly available at the time of publication, all authors commit to make the data underlying the findings described in this study fully available without restriction to those who request the data, in compliance with the PLOS Data Availability Statement policy. For data sets involving personally identifiable information or other sensitive data, data sharing is contingent on the data being handled appropriately by the data requester and in accordance with all applicable local requirements.",False,True,True dataset,10,doi10,"Data availability The authors declare that all data supporting the findings of this study are available from the corresponding authors upon request. The source data within the article, and its Supplementary Data Files, are provided as a Source Data File accompanied with this article. Individual raw data is included on all statistically relevant figures and within the accompanying Source Data File. Source data are provided with this paper. Code availability Capmeter code information is detailed in the Reporting summary linked to this article and available at https://sites.google.com/site/capmeter/.",False,True,True dataset,10.1126_science.abn5856,doi10.1126_science.abn5856,Data and materials availability: The data presented in this paper are detailed in supplementary materials. Summary data and analysis scripts are available at https://github.com/LaMariposa/zoonomia_biodiversity. NCBI accession numbers for sequence data used in analyses are given in table S1.,False,True,True dataset,10.1371_journal.pntd.0007109,doi10.1371_journal.pntd.0007109,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1371_journal.pstr.0000077,doi10.1371_journal.pstr.0000077,Data Availability Statement: The data may be found here: https://urldefense.com/v3/__https://doi.org/10.7924/r4qf8x909__;!!OToaGQ!oUvItyVLC6NVRttkwI0Z8a1Y3GENeXatmIOtoVlI8ZDWdKW05-OzWFbqyHjpSkwfVrNIyaPTQKR9vzhQFw$.,False,True,False dataset,10.1371_journal.pone.0286828,doi10.1371_journal.pone.0286828,Data Availability Statement All relevant data are within the manuscript and its Supporting Information files.,False,True,True dataset,10.1038_s41586-023-06362-4,doi10.1038_s41586-023-06362-4,"Data availabilityAll data will be made freely available upon reasonable request. Single-cell RNA-sequencing data for intestinal immune cells during food allergy in BALB/cJ mice (Extended Data Fig. 7g) can be accessed at the National Center for Biotechnology Information Gene Expression Omnibus, accession number GSE124880 (ref. 73). Alternatively, processed single-cell RNA-sequencing data for this same study can be found at https://portals.broadinstitute.org/single_cell/study/fasi-immune-mouse-small-intestine. Allen Mouse Brain Atlas reference atlas is available from https://atlas.brain-map.org. ClearMap 2.0 with WobblyStitcher, TubeMap and CellMap is available at https://github/ChristophKirst/ClearMap2 (refs. 68,74). Source data are provided with this paper.",False,True,True dataset,10.1371_journal.pgph.0002011,doi10.1371_journal.pgph.0002011,Data Availability Statement All data in Supporting information files.,False,True,False dataset,10.1088_1361-648x_ad0c77,doi10.1088_1361-648x_ad0c77,Data availability statementThe data cannot be made publicly available upon publication because they are not available in a format that is sufficiently accessible or reusable by other researchers. The data that support the findings of this study are available upon reasonable request from the authors.,False,True,False dataset,10.1007_s00382-022-06544-2,doi10.1007_s00382-022-06544-2,Data availability The data that support the findings of this study are available from the corresponding author upon request.,False,True,False dataset,10.1371_journal.pone.0234905,doi10.1371_journal.pone.0234905,Data Availability Statement All relevant data are within the paper and its Supporting Information files.,False,True,False dataset,10.1038_s41467-023-40821-w,doi10.1038_s41467-023-40821-w,"Data availabilityThe V2-IgG/KRASG12V-HLA-A*03:01 ternary complex data generated in this study have been deposited in the wwPBD database under accession code 7STF and Electron Microscopy Data Bank under accession code EMD-25427. The KRASWT-HLA-A*03:01 complex data generated in this study have been deposited in the wwPDB database under accession code 8DVG. The PDB ID 6O9B was used as the search model for the KRASWT-HLA-A*03:01 structure determination. The coordinates of the KRASWT-HLA-A*03:01 monomer (determined in this paper) PDB ID 8DVG and PDB entry 7KGU (2Q1-Fab) was used as a search model for the V2-IgG/KRASG12V-HLA-A*03:01 complex. Source data are provided with this paper. The SDS-PAGE gels, SPR sensorgrams, co-culture experiments and DSF data generated in this study are provided in the Supplementary Information/Source Data file. Source data are provided with this paper.",False,True,True dataset,10.1093_gbe_evad100,doi10.1093_gbe_evad100,"Data Availability All data described here are available from the NCBI Umbrella BioProject PRJNA386376. All cicada bacteriome metatranscritpome and metagenome sequencing libraries were deposited in the Sequence Read Archive (SRA) database under BioProject PRJNA923375. Newly generated genome assemblies for endosymbionts of D. near semicincta, T. ulnaria, T. limbata, and O. oregona, as well as the corresponding SRA experiments (containing the raw reads), are available under BioProjects PRJNA923375, PRJNA512238, PRJNA246493, and PRJNA385844, respectively.",False,True,True dataset,10.1186_s12884-020-03256-5,doi10.1186_s12884-020-03256-5,Availability of data and materials All data generated or analyzed during this study are included in this published article.,False,True,False dataset,10.1007_s00006-022-01207-1,doi10.1007_s00006-022-01207-1,Data availability The periods of all the few monomial quartics that we have been able to compute are available on our Dropbox repository. We also in- cluded our Picard lattice computations in that repository. Code availability The software package developed for this project is avail- able at github: period graph. This software depends on the custom package PeriodSuite. These packages are written to work in an environment running SageMath [9] and Magma [3].,False,True,True dataset,10.3389/fmicb.2021,doi10.3389/fmicb.2021,"DATA AVAILABILITY STATEMENT Whole genomes and Genbank submissions can be found on NCBI accession number PRJNA649544 and MZ773212– MZ77322, respectively. Kbase with the workflow of the metagenomic analysis can be found on permanent links: WGS: https://narrative.kbase.us/narrative/83182 MISEQ; https: //narrative.kbase.us/narrative/56628.",False,True,False dataset,10,doi10,Data availability The data generated/analyzed during this study are available from the corresponding author on reasonable request.,False,True,False dataset,10.1371_journal.pdig.0000438,doi10.1371_journal.pdig.0000438,Data Availability Statement: All data generated or analyzed during the study are included in the published paper.,False,True,False dataset,10.1126_science.adf4721,doi10.1126_science.adf4721,"Data and materials availability: Single-cell RNA-seq data have been deposited at GEO: GSE212230 and can be visualized through an interactive browser at https://shiny.mdc-berlin.de/ARVEX/. All data are available in the manuscript, the supplementary material or deposited at Zenodo (83, 84).",True,True,True dataset,10,doi10,Availability of data and materials The code generated during the current study are available at github.com/ shaharavin/BrainEvolutionSimulator [73].,False,True,True dataset,10.1073_pnas.2221175120,doi10.1073_pnas.2221175120,"Data, Materials, and Software Availability All study data are included in the article and/or SI Appendix. RNA-seq and ATAC-seq data have been deposited in the National Center for Biotechnology Information (NCBI)- Gene Expression Omnibus (GEO) under GSE229454 (56).",True,True,True dataset,10.1371_journal.pone.0282086,doi10.1371_journal.pone.0282086,Data Availability Statement All data files are available from the Open Science Framework at https://osf.io/wmr3d/ (DOI: 10.17605/OSF.IO/WMR3D).,True,True,False dataset,10.1038_s41467-023-41078-z,doi10.1038_s41467-023-41078-z,"Data availabilityThe reagents and data generated in this study are available without restriction. RNA-sequencing data have been deposited in the Gene Expression Omnibus (GEO) repository with accession number: GSE169392. The accession code for the mouse genome used for the RNA-seq is GRCm38, available at https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000001635.20/. The scRNAseq database from ref. 86 can be found at http://dropviz.org/. Source data are provided with this paper.Code availabilityThe scripts generated in this study are available without restriction. Please visit https://github.com/ErogluLab/CellCounts, https://github.com/UlloaSeverinoLab to access the custom codes used in this manuscript. We recommend getting in touch with the corresponding authors to have further information.",False,True,True dataset,10.1155_2019_8320316,doi10.1155_2019_8320316,Data Availability The SWDA data used to support the findings of this study have been deposited in http://compprag.christopherpotts.net/swda.html.,False,True,False