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README.md
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license: cc-by-nc-sa-4.0
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---
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---
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license: cc-by-nc-sa-4.0
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tags:
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- genomics
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- dna
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- benchmark
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pretty_name: GLMap Probe Panels
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---
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# GLMap Probe Panels
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Prebuilt DNA probe panels for [GLMap](https://github.com/ai4nucleome/GLMap)
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— a training-free framework for profiling genomic language models by their
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likelihood responses over a fixed panel of DNA sequences.
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## Files
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| File | Description |
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|---|---|
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| `main_panel.parquet` | 10,000-probe biological panel (14 functional elements × 4 categories) |
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| `MLM_k1ablation_1000_main_panel.parquet` | 1,000-probe stratified subset for the k=1 vs k=6 stride PLL ablation |
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| `panel_manifest.json` | Per-element / per-dataset counts and sampling seeds |
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| `panel_summary.md` | Human-readable panel composition summary |
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## Usage
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```python
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import glmap
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panel = glmap.load_panel() # auto-downloads from this dataset if not local
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```
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Or directly:
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```python
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import pandas as pd
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from huggingface_hub import hf_hub_download
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path = hf_hub_download("Tim419/GLMap-panels", "main_panel.parquet", repo_type="dataset")
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panel = pd.read_parquet(path)
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```
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## License
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**CC-BY-NC-SA-4.0.** The panel was assembled from three upstream benchmarks:
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- GUE (DNABERT-2) — Apache-2.0
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- Plant Genomic Benchmark (PGB) — CC-BY-NC-SA-4.0
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- DNA Foundation Benchmark (DFB) — Apache-2.0
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Because the panel contains 1,600 probes drawn from PGB, the combined
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artefact inherits PGB's CC-BY-NC-SA-4.0 license (ShareAlike). For
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non-commercial research use with attribution. Please cite all three
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upstream benchmarks plus the GLMap paper.
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