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README.md

@@ -52,10 +52,10 @@ paper_test = causal.filter(
 
 | Scope | Rows | Held-out `test` rows |
 |---|---:|---:|
-| Complete release | 186,372 | 37,240 |
-| Corrected paper categories | 167,236 | 33,450 |
+| Complete release | 186,370 | 37,240 |
+| Corrected paper categories | 167,234 | 33,450 |
 
-Labels are balanced: 93,186 `feature` and 93,186 `random-noannot` rows.
+Labels are balanced: 93,185 `feature` and 93,185 `random-noannot` rows.
 Every pair shares `pair_id`.
 
 The row-level `split` uses held-out chromosomes `chr2`, `chr3`, `chr16`, and
@@ -74,7 +74,7 @@ For each control, the sampler avoids the union of retained annotation
 intervals and previously selected annotation-free controls. The control has
 the same chromosome and length as its feature. Independent verification
 repeats this check without using the sampler and finds zero overlaps across
-all 93,186 controls. It also confirms every causal and bidirectional control
+all 93,185 controls. It also confirms every causal and bidirectional control
 context contains only uppercase `A/C/G/T`.
 
 Exclude `noncoding_regions` for the corrected ten-category paper view.
@@ -122,6 +122,8 @@ ambiguous feature/control group and every conflicting-label exact-input group.
 Same-label duplicates remaining within a config share `context_group_id`;
 independent checks find zero exact inputs crossing train/test and zero
 conflicting-label groups.
+The held-out ATG benchmark has priority over an exact duplicate functional
+training input, so the affected chr7 coding pair is removed consistently.
 
 ## Processing and citation
 

functional-random-noannot-gamba-bidi.parquet

@@ -1,3 +1,3 @@
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functional-random-noannot-gamba-causal.parquet

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