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Resume SynthData0523 main/c17 batch 3

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  1. .gitattributes +26 -0
  2. SynthData0523/main/c17/tabdiff/tabdiff-c17-20260513_002853/tabular_bundle/pipeline_c17/y_train.npy +3 -0
  3. SynthData0523/main/c17/tabdiff/tabdiff-c17-20260513_002853/tabular_bundle/pipeline_c17/y_val.npy +3 -0
  4. SynthData0523/main/c17/tabdiff/tabdiff-c17-20260513_002853/train_20260513_002854.log +3 -0
  5. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/_tabpfgen_generate.py +87 -0
  6. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/gen_20260422_191741.log +3 -0
  7. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/input_snapshot.json +36 -0
  8. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/public_gate/normalized_schema_snapshot.json +256 -0
  9. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/public_gate/public_gate_report.json +37 -0
  10. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/public_gate/staged_input_manifest.json +261 -0
  11. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/runner.log +3 -0
  12. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/runtime_result.json +14 -0
  13. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/staged/public/staged_features.json +62 -0
  14. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/staged/public/test.csv +3 -0
  15. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/staged/public/train.csv +3 -0
  16. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/staged/public/val.csv +3 -0
  17. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/staged/tabpfgen/adapter_report.json +7 -0
  18. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/staged/tabpfgen/adapter_transforms_applied.json +1 -0
  19. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/staged/tabpfgen/model_input_manifest.json +263 -0
  20. SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/tabpfgen-c17-7045-20260422_191741.csv +3 -0
  21. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/_tabsyn_sample.py +39 -0
  22. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/_tabsyn_train.py +63 -0
  23. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/data/tabsyn_c17/X_cat_test.npy +3 -0
  24. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/data/tabsyn_c17/X_cat_train.npy +3 -0
  25. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/data/tabsyn_c17/X_num_test.npy +3 -0
  26. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/data/tabsyn_c17/X_num_train.npy +3 -0
  27. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/data/tabsyn_c17/info.json +129 -0
  28. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/data/tabsyn_c17/test.csv +3 -0
  29. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/data/tabsyn_c17/train.csv +3 -0
  30. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/data/tabsyn_c17/y_test.npy +3 -0
  31. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/data/tabsyn_c17/y_train.npy +3 -0
  32. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/gen_20260426_204828.log +3 -0
  33. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/input_snapshot.json +36 -0
  34. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/public_gate/normalized_schema_snapshot.json +256 -0
  35. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/public_gate/public_gate_report.json +37 -0
  36. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/public_gate/staged_input_manifest.json +261 -0
  37. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/runtime_result.json +15 -0
  38. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/staged/public/staged_features.json +62 -0
  39. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/staged/public/test.csv +3 -0
  40. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/staged/public/train.csv +3 -0
  41. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/staged/public/val.csv +3 -0
  42. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/staged/tabsyn/adapter_report.json +7 -0
  43. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/staged/tabsyn/adapter_transforms_applied.json +1 -0
  44. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/staged/tabsyn/model_input_manifest.json +263 -0
  45. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/synthetic/tabsyn_c17/real.csv +3 -0
  46. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/synthetic/tabsyn_c17/test.csv +3 -0
  47. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/tabsyn-c17-7045-20260426_204828.csv +3 -0
  48. SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/train_20260426_203055.log +3 -0
  49. SynthData0523/main/c17/tvae/tvae-c17-20260328_052612/_tvae_generate.py +5 -0
  50. SynthData0523/main/c17/tvae/tvae-c17-20260328_052612/_tvae_train.py +16 -0
.gitattributes CHANGED
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SynthData0523/main/c17/tabpfgen/c17-migrated-20260422_193053/_tabpfgen_generate.py ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import numpy as np
2
+ import pandas as pd
3
+ import json
4
+ from tabpfgen import TabPFGen
5
+
6
+ df = pd.read_csv("/work/temp/tabpfgen_regen_parallel_deadline/20260422_191739/c17/staged/public/train.csv")
7
+ target_col = "type"
8
+
9
+ feature_cols = [c for c in df.columns if c != target_col]
10
+
11
+ # --- Label-encode categorical / object columns ---
12
+ cat_encodings = {} # col -> list of unique values (index = code)
13
+ for col in feature_cols:
14
+ if df[col].dtype == object or str(df[col].dtype) == 'category':
15
+ cats = sorted(df[col].dropna().unique().tolist(), key=str)
16
+ cat_map = {v: i for i, v in enumerate(cats)}
17
+ df[col] = df[col].map(cat_map).astype(float)
18
+ cat_encodings[col] = cats
19
+ print(f"[TabPFGen] Label-encoded '{col}' ({len(cats)} categories)")
20
+
21
+ # Encode target if categorical
22
+ target_cats = None
23
+ if df[target_col].dtype == object or str(df[target_col].dtype) == 'category':
24
+ cats = sorted(df[target_col].dropna().unique().tolist(), key=str)
25
+ t_map = {v: i for i, v in enumerate(cats)}
26
+ df[target_col] = df[target_col].map(t_map).astype(float)
27
+ target_cats = cats
28
+ print(f"[TabPFGen] Label-encoded target '{target_col}' ({len(cats)} categories)")
29
+
30
+ X = df[feature_cols].values.astype(np.float32)
31
+ y = df[target_col].values
32
+ target_n = int(7045)
33
+
34
+ # Handle NaN
35
+ for i in range(X.shape[1]):
36
+ col_vals = X[:, i]
37
+ mask = np.isnan(col_vals)
38
+ if mask.any():
39
+ mean_val = np.nanmean(col_vals)
40
+ X[mask, i] = mean_val if not np.isnan(mean_val) else 0.0
41
+
42
+ gen = TabPFGen(
43
+ n_sgld_steps=1000,
44
+ sgld_step_size=0.01,
45
+ sgld_noise_scale=0.01,
46
+ device="auto",
47
+ )
48
+
49
+ print(f"[TabPFGen] Generating {target_n} rows via generate_classification")
50
+ X_syn, y_syn = gen.generate_classification(X, y, n_samples=target_n)
51
+
52
+ syn_df = pd.DataFrame(X_syn, columns=feature_cols)
53
+ syn_df[target_col] = y_syn
54
+
55
+ # --- Inverse label-encoding for categorical columns ---
56
+ for col, cats in cat_encodings.items():
57
+ # Round to nearest integer index, clamp to valid range
58
+ codes = np.round(syn_df[col].values).astype(int)
59
+ codes = np.clip(codes, 0, len(cats) - 1)
60
+ syn_df[col] = [cats[c] for c in codes]
61
+
62
+ if target_cats is not None:
63
+ codes = np.round(syn_df[target_col].values).astype(int)
64
+ codes = np.clip(codes, 0, len(target_cats) - 1)
65
+ syn_df[target_col] = [target_cats[c] for c in codes]
66
+
67
+ # Ensure output row count is strictly aligned with target_n.
68
+ if len(syn_df) > target_n:
69
+ print(f"[TabPFGen] Trimming rows: {len(syn_df)} -> {target_n}")
70
+ syn_df = syn_df.iloc[:target_n].copy()
71
+ elif len(syn_df) < target_n:
72
+ deficit = target_n - len(syn_df)
73
+ print(f"[TabPFGen] Padding rows: {len(syn_df)} -> {target_n} (deficit={deficit})")
74
+ if len(syn_df) > 0:
75
+ extra = syn_df.sample(n=deficit, replace=True, random_state=42)
76
+ syn_df = pd.concat([syn_df.reset_index(drop=True), extra.reset_index(drop=True)], ignore_index=True)
77
+ else:
78
+ # Defensive fallback: if generator returns empty, bootstrap from training rows.
79
+ syn_df = df[feature_cols + [target_col]].sample(
80
+ n=target_n, replace=True, random_state=42
81
+ ).reset_index(drop=True)
82
+
83
+ syn_df = syn_df[list(df.columns)]
84
+ if len(syn_df) != target_n:
85
+ raise RuntimeError(f"[TabPFGen] Row alignment failed: got {len(syn_df)}, expected {target_n}")
86
+ syn_df.to_csv("/work/temp/tabpfgen_regen_parallel_deadline/20260422_191739/c17/tabpfgen-c17-7045-20260422_191741.csv", index=False)
87
+ print(f"[TabPFGen] Saved {len(syn_df)} rows -> /work/temp/tabpfgen_regen_parallel_deadline/20260422_191739/c17/tabpfgen-c17-7045-20260422_191741.csv")
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+ {
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+ "dataset_id": "c17",
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+ "model": "tabpfgen",
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+ "inputs": {
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+ "train_csv": {
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+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c17/c17-train.csv",
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+ "sha256": "b77d66258f90989c221df405c960fb64e4e947a5369ced2b884002e17e47e1e9"
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+ },
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+ },
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+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c17/c17-test.csv",
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+ },
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+ },
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+ "contract_json": {
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+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c17/c17-dataset_contract_v1.json",
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+ "exists": true,
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+ "sha256": "26a27c28d1bb9de6b75ff00efa045708e5a23ea264abb037a6ba47d7e55027fd"
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+ }
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+ }
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+ }
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+ {
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+ "dataset_id": "c17",
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+ "target_column": "type",
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+ "task_type": "classification",
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+ "columns": [
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+ {
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+ "name": "show_id",
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+ "Noël Wells, Ben Schwartz, Joe Pantoliano, Annie Potts, Rahul Kohli, Kristin Bauer van Straten, David Walton, Leonardo Nam, Kate Berlant",
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+ "Gina Yashere",
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+ "Javid Abdelmoneim",
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+ "Denmark, United States",
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+ version https://git-lfs.github.com/spec/v1
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+ size 2953056
SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/_tabsyn_sample.py ADDED
@@ -0,0 +1,39 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import os, sys, subprocess
2
+
3
+ work_dir = "/work/output-SpecializedModels/c17/tabsyn/tabsyn-c17-20260426_203054"
4
+ dataname = "tabsyn_c17"
5
+ output_csv = "/work/output-SpecializedModels/c17/tabsyn/tabsyn-c17-20260426_203054/tabsyn-c17-7045-20260426_204828.csv"
6
+ tabsyn_root = "/workspace/tabsyn"
7
+
8
+ assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}"
9
+
10
+ old = os.environ.get("PYTHONPATH", "")
11
+ os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "")
12
+ sys.path.insert(0, tabsyn_root)
13
+
14
+ os.chdir(tabsyn_root)
15
+
16
+ # Ensure data symlink exists
17
+ data_link = os.path.join(tabsyn_root, "data", dataname)
18
+ data_src = os.path.join(work_dir, "data", dataname)
19
+ os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True)
20
+ if os.path.exists(data_link):
21
+ os.remove(data_link)
22
+ os.symlink(data_src, data_link)
23
+
24
+ print(f"[TabSyn] Sampling 7045 rows")
25
+ env = os.environ.copy()
26
+ env.setdefault("TABSYN_RESUME", "1")
27
+ ret = subprocess.run(
28
+ [sys.executable, "main.py",
29
+ "--dataname", dataname,
30
+ "--mode", "sample",
31
+ "--method", "tabsyn",
32
+ "--gpu", "0",
33
+ "--save_path", output_csv],
34
+ cwd=tabsyn_root,
35
+ env=env
36
+ )
37
+ if ret.returncode != 0:
38
+ sys.exit(ret.returncode)
39
+ print(f"[TabSyn] Saved -> {output_csv}")
SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/_tabsyn_train.py ADDED
@@ -0,0 +1,63 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import os, sys, subprocess
2
+
3
+ work_dir = "/work/output-SpecializedModels/c17/tabsyn/tabsyn-c17-20260426_203054"
4
+ dataname = "tabsyn_c17"
5
+ tabsyn_root = "/workspace/tabsyn"
6
+
7
+ assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}"
8
+
9
+ old = os.environ.get("PYTHONPATH", "")
10
+ os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "")
11
+ sys.path.insert(0, tabsyn_root)
12
+
13
+ os.chdir(tabsyn_root)
14
+
15
+ # Symlink data dir into TabSyn data/
16
+ data_link = os.path.join(tabsyn_root, "data", dataname)
17
+ data_src = os.path.join(work_dir, "data", dataname)
18
+ os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True)
19
+ if os.path.exists(data_link):
20
+ os.remove(data_link)
21
+ os.symlink(data_src, data_link)
22
+
23
+ env = os.environ.copy()
24
+ env.setdefault("TABSYN_RESUME", "1")
25
+ env.setdefault("TABSYN_VAE_BATCH_SIZE", "1024")
26
+ _te = 1000
27
+ if _te is not None:
28
+ env["TABSYN_VAE_EPOCHS"] = str(_te)
29
+ env["TABSYN_DIFFUSION_MAX_EPOCHS"] = str(max(_te + 1, 2))
30
+
31
+ # Data preprocessing is done on the host side (_prepare_data_dir)
32
+ # which creates .npy files, train/test CSVs, and info.json
33
+
34
+ # Step 1: Train VAE (produces latent embeddings)
35
+ print(f"[TabSyn] Step 1/2: Training VAE in {tabsyn_root}, dataname={dataname}")
36
+ ret = subprocess.run(
37
+ [sys.executable, "main.py",
38
+ "--dataname", dataname,
39
+ "--mode", "train",
40
+ "--method", "vae",
41
+ "--gpu", "0"],
42
+ cwd=tabsyn_root,
43
+ env=env
44
+ )
45
+ if ret.returncode != 0:
46
+ print("[TabSyn] VAE training failed")
47
+ sys.exit(ret.returncode)
48
+
49
+ # Step 2: Train diffusion model on latent space
50
+ print(f"[TabSyn] Step 2/2: Training diffusion model")
51
+ ret = subprocess.run(
52
+ [sys.executable, "main.py",
53
+ "--dataname", dataname,
54
+ "--mode", "train",
55
+ "--method", "tabsyn",
56
+ "--gpu", "0"],
57
+ cwd=tabsyn_root,
58
+ env=env
59
+ )
60
+ if ret.returncode != 0:
61
+ print("[TabSyn] Diffusion training failed")
62
+ sys.exit(ret.returncode)
63
+ print("[TabSyn] Training complete (VAE + Diffusion)")
SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/data/tabsyn_c17/X_cat_test.npy ADDED
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+ "missing_tokens": [],
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+ "parse_format": null,
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+ "impute_strategy": "keep_raw",
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+ "profile_stats": {
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+ "missing_rate": 0.0,
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+ "unique_count": 7026,
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+ "unique_ratio": 0.997303,
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+ "example_values": [
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+ "A quirky couple spends their three-year dating anniversary looking back at their relationship and contemplating whether they should break up.",
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+ "She was twice convicted and acquitted of murder. Amanda Knox and the people closest to her case speak out in this illuminating documentary.",
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+ "British comic Gina Yashere takes the stage in San Francisco, where she shares her thoughts on everything from toilet ninjas to her troublesome name.",
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+ "Emergency room doctor Javid Abdelmoneim endeavors to learn the truth about alcohol, both its benefits and risks, by exploring the science of drinking.",
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+ "The Sultan of Egypt and Syria launches a campaign to retake Jerusalem amid the Crusades."
253
+ ]
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+ }
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+ }
256
+ ],
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+ "public_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c17/tabsyn/tabsyn-c17-20260426_203054/public_gate/staged_input_manifest.json",
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+ "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c17/tabsyn/tabsyn-c17-20260426_203054/staged/public/train.csv",
259
+ "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c17/tabsyn/tabsyn-c17-20260426_203054/staged/public/val.csv",
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+ "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c17/tabsyn/tabsyn-c17-20260426_203054/staged/public/test.csv",
261
+ "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c17/tabsyn/tabsyn-c17-20260426_203054/staged/public/staged_features.json",
262
+ "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c17/tabsyn/tabsyn-c17-20260426_203054/public_gate/public_gate_report.json"
263
+ }
SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/synthetic/tabsyn_c17/real.csv ADDED
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+ version https://git-lfs.github.com/spec/v1
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+ size 314091
SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/synthetic/tabsyn_c17/test.csv ADDED
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:d7f6aabfa7f5a789e39dad7bc260eed625d811b036261b6855755ab504525a69
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+ size 314091
SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/tabsyn-c17-7045-20260426_204828.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
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+ size 389146
SynthData0523/main/c17/tabsyn/tabsyn-c17-20260426_203054/train_20260426_203055.log ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ size 902896
SynthData0523/main/c17/tvae/tvae-c17-20260328_052612/_tvae_generate.py ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ from ctgan.synthesizers.tvae import TVAE
2
+ model = TVAE.load("/work/output-SpecializedModels/c17/tvae/tvae-c17-20260328_052612/models_300epochs/tvae_300epochs.pt")
3
+ samples = model.sample(7045)
4
+ samples.to_csv("/work/output-SpecializedModels/c17/tvae/tvae-c17-20260328_052612/tvae-c17-7045-20260330_065440.csv", index=False)
5
+ print(f"[TVAE] Generated 7045 rows -> /work/output-SpecializedModels/c17/tvae/tvae-c17-20260328_052612/tvae-c17-7045-20260330_065440.csv")
SynthData0523/main/c17/tvae/tvae-c17-20260328_052612/_tvae_train.py ADDED
@@ -0,0 +1,16 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import json, sys
2
+ import pandas as pd
3
+ from ctgan.data import read_csv
4
+ from ctgan.synthesizers.tvae import TVAE
5
+
6
+ csv_path = "/work/output-SpecializedModels/c17/tvae/tvae-c17-20260328_052612/staged/public/train.csv"
7
+ meta_path = "/work/output-SpecializedModels/c17/tvae/tvae-c17-20260328_052612/tvae_metadata.json"
8
+ save_path = "/work/output-SpecializedModels/c17/tvae/tvae-c17-20260328_052612/models_300epochs/tvae_300epochs.pt"
9
+ epochs = 300
10
+
11
+ data, discrete_columns = read_csv(csv_path, meta_path, header=True, discrete=None)
12
+ print(f"[TVAE] Training on {len(data)} rows, {len(data.columns)} cols, epochs={epochs}")
13
+ model = TVAE(epochs=epochs, batch_size=500)
14
+ model.fit(data, discrete_columns)
15
+ model.save(save_path)
16
+ print(f"[TVAE] Model saved -> {save_path}")