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Resume SynthData0523 main/c6 batch 16

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  1. .gitattributes +22 -0
  2. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/ddpm_cb_best/eval_mlp.json +3 -0
  3. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/ddpm_cb_best/eval_simple.json +3 -0
  4. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/ddpm_cb_best/importance.json +3 -0
  5. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/ddpm_cb_best/info.json +3 -0
  6. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/ddpm_cb_best/privacies.json +3 -0
  7. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/ddpm_cb_best/privacy.json +3 -0
  8. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/ddpm_mlp_best/config.toml +3 -0
  9. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/ddpm_mlp_best/eval_catboost.json +3 -0
  10. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/ddpm_mlp_best/eval_mlp.json +3 -0
  11. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/ddpm_mlp_best/importance.json +3 -0
  12. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/ddpm_mlp_best/info.json +3 -0
  13. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/smote/config.toml +3 -0
  14. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/smote/eval_catboost.json +3 -0
  15. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/smote/eval_mlp.json +3 -0
  16. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/smote/eval_simple.json +3 -0
  17. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/smote/info.json +3 -0
  18. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/smote/privacies.json +3 -0
  19. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/smote/privacy.json +3 -0
  20. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/tvae/config.toml +3 -0
  21. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/tvae/eval_catboost.json +3 -0
  22. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/tvae/eval_simple.json +3 -0
  23. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/exp/wilt/tvae/info.json +3 -0
  24. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/__init__.py +12 -0
  25. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/__pycache__/__init__.cpython-311.pyc +0 -0
  26. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/__pycache__/data.cpython-311.pyc +0 -0
  27. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/__pycache__/deep.cpython-311.pyc +0 -0
  28. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/__pycache__/env.cpython-311.pyc +0 -0
  29. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/__pycache__/metrics.cpython-311.pyc +0 -0
  30. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/__pycache__/util.cpython-311.pyc +0 -0
  31. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/data.py +719 -0
  32. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/deep.py +168 -0
  33. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/env.py +39 -0
  34. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/metrics.py +158 -0
  35. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/util.py +433 -0
  36. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/requirements.txt +22 -0
  37. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/run_tabddpm.sh +5 -0
  38. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/run_tabddpm_docker.sh +5 -0
  39. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__init__.py +0 -0
  40. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/__init__.cpython-311.pyc +0 -0
  41. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/eval_catboost.cpython-311.pyc +0 -0
  42. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/eval_mlp.cpython-311.pyc +0 -0
  43. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/eval_simple.cpython-311.pyc +0 -0
  44. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/sample.cpython-311.pyc +0 -0
  45. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/train.cpython-311.pyc +0 -0
  46. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/utils_train.cpython-311.pyc +0 -0
  47. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/eval_catboost.py +145 -0
  48. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/eval_mlp.py +176 -0
  49. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/eval_seeds.py +121 -0
  50. SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/eval_seeds_simple.py +130 -0
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:511a0dc9860b7587f2382407ae286e4160a320f28a3b2bff6bd85ce88a6550e4
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SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/__init__.py ADDED
@@ -0,0 +1,12 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import torch
2
+ from icecream import install
3
+
4
+ torch.set_num_threads(1)
5
+ install()
6
+
7
+ from . import env # noqa
8
+ from .data import * # noqa
9
+ from .deep import * # noqa
10
+ from .env import * # noqa
11
+ from .metrics import * # noqa
12
+ from .util import * # noqa
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1
+ import hashlib
2
+ from collections import Counter
3
+ from copy import deepcopy
4
+ from dataclasses import astuple, dataclass, replace
5
+ from importlib.resources import path
6
+ from pathlib import Path
7
+ from typing import Any, Literal, Optional, Union, cast, Tuple, Dict, List
8
+
9
+ import numpy as np
10
+ import pandas as pd
11
+ from sklearn.model_selection import train_test_split
12
+ from sklearn.pipeline import make_pipeline
13
+ import sklearn.preprocessing
14
+ import torch
15
+ import os
16
+ from category_encoders import LeaveOneOutEncoder
17
+ from sklearn.impute import SimpleImputer
18
+ from sklearn.preprocessing import StandardScaler
19
+ from scipy.spatial.distance import cdist
20
+
21
+ from . import env, util
22
+ from .metrics import calculate_metrics as calculate_metrics_
23
+ from .util import TaskType, load_json
24
+
25
+ ArrayDict = Dict[str, np.ndarray]
26
+ TensorDict = Dict[str, torch.Tensor]
27
+
28
+
29
+ CAT_MISSING_VALUE = '__nan__'
30
+ CAT_RARE_VALUE = '__rare__'
31
+ Normalization = Literal['standard', 'quantile', 'minmax']
32
+ NumNanPolicy = Literal['drop-rows', 'mean']
33
+ CatNanPolicy = Literal['most_frequent']
34
+ CatEncoding = Literal['one-hot', 'counter']
35
+ YPolicy = Literal['default']
36
+
37
+
38
+ class StandardScaler1d(StandardScaler):
39
+ def partial_fit(self, X, *args, **kwargs):
40
+ assert X.ndim == 1
41
+ return super().partial_fit(X[:, None], *args, **kwargs)
42
+
43
+ def transform(self, X, *args, **kwargs):
44
+ assert X.ndim == 1
45
+ return super().transform(X[:, None], *args, **kwargs).squeeze(1)
46
+
47
+ def inverse_transform(self, X, *args, **kwargs):
48
+ assert X.ndim == 1
49
+ return super().inverse_transform(X[:, None], *args, **kwargs).squeeze(1)
50
+
51
+
52
+ def get_category_sizes(X: Union[torch.Tensor, np.ndarray]) -> List[int]:
53
+ """Return K[i] s.t. F.one_hot(x[:,i], K[i]) is valid. Requires K[i] > max(x[:,i])."""
54
+ XT = X.T.cpu().tolist() if isinstance(X, torch.Tensor) else X.T.tolist()
55
+ return [int(np.max(x)) + 1 if len(x) > 0 else 0 for x in XT]
56
+
57
+
58
+ @dataclass(frozen=False)
59
+ class Dataset:
60
+ X_num: Optional[ArrayDict]
61
+ X_cat: Optional[ArrayDict]
62
+ y: ArrayDict
63
+ y_info: Dict[str, Any]
64
+ task_type: TaskType
65
+ n_classes: Optional[int]
66
+
67
+ @classmethod
68
+ def from_dir(cls, dir_: Union[Path, str]) -> 'Dataset':
69
+ dir_ = Path(dir_)
70
+ splits = [k for k in ['train', 'val', 'test'] if dir_.joinpath(f'y_{k}.npy').exists()]
71
+
72
+ def load(item) -> ArrayDict:
73
+ return {
74
+ x: cast(np.ndarray, np.load(dir_ / f'{item}_{x}.npy', allow_pickle=True)) # type: ignore[code]
75
+ for x in splits
76
+ }
77
+
78
+ if Path(dir_ / 'info.json').exists():
79
+ info = util.load_json(dir_ / 'info.json')
80
+ else:
81
+ info = None
82
+ return Dataset(
83
+ load('X_num') if dir_.joinpath('X_num_train.npy').exists() else None,
84
+ load('X_cat') if dir_.joinpath('X_cat_train.npy').exists() else None,
85
+ load('y'),
86
+ {},
87
+ TaskType(info['task_type']),
88
+ info.get('n_classes'),
89
+ )
90
+
91
+ @property
92
+ def is_binclass(self) -> bool:
93
+ return self.task_type == TaskType.BINCLASS
94
+
95
+ @property
96
+ def is_multiclass(self) -> bool:
97
+ return self.task_type == TaskType.MULTICLASS
98
+
99
+ @property
100
+ def is_regression(self) -> bool:
101
+ return self.task_type == TaskType.REGRESSION
102
+
103
+ @property
104
+ def n_num_features(self) -> int:
105
+ return 0 if self.X_num is None else self.X_num['train'].shape[1]
106
+
107
+ @property
108
+ def n_cat_features(self) -> int:
109
+ return 0 if self.X_cat is None else self.X_cat['train'].shape[1]
110
+
111
+ @property
112
+ def n_features(self) -> int:
113
+ return self.n_num_features + self.n_cat_features
114
+
115
+ def size(self, part: Optional[str]) -> int:
116
+ return sum(map(len, self.y.values())) if part is None else len(self.y[part])
117
+
118
+ @property
119
+ def nn_output_dim(self) -> int:
120
+ if self.is_multiclass:
121
+ assert self.n_classes is not None
122
+ return self.n_classes
123
+ else:
124
+ return 1
125
+
126
+ def get_category_sizes(self, part: str) -> List[int]:
127
+ return [] if self.X_cat is None else get_category_sizes(self.X_cat[part])
128
+
129
+ def calculate_metrics(
130
+ self,
131
+ predictions: Dict[str, np.ndarray],
132
+ prediction_type: Optional[str],
133
+ ) -> Dict[str, Any]:
134
+ metrics = {
135
+ x: calculate_metrics_(
136
+ self.y[x], predictions[x], self.task_type, prediction_type, self.y_info
137
+ )
138
+ for x in predictions
139
+ }
140
+ if self.task_type == TaskType.REGRESSION:
141
+ score_key = 'rmse'
142
+ score_sign = -1
143
+ else:
144
+ score_key = 'accuracy'
145
+ score_sign = 1
146
+ for part_metrics in metrics.values():
147
+ part_metrics['score'] = score_sign * part_metrics[score_key]
148
+ return metrics
149
+
150
+ def change_val(dataset: Dataset, val_size: float = 0.2):
151
+ # should be done before transformations
152
+
153
+ y = np.concatenate([dataset.y['train'], dataset.y['val']], axis=0)
154
+
155
+ ixs = np.arange(y.shape[0])
156
+ if dataset.is_regression:
157
+ train_ixs, val_ixs = train_test_split(ixs, test_size=val_size, random_state=777)
158
+ else:
159
+ train_ixs, val_ixs = train_test_split(ixs, test_size=val_size, random_state=777, stratify=y)
160
+
161
+ dataset.y['train'] = y[train_ixs]
162
+ dataset.y['val'] = y[val_ixs]
163
+
164
+ if dataset.X_num is not None:
165
+ X_num = np.concatenate([dataset.X_num['train'], dataset.X_num['val']], axis=0)
166
+ dataset.X_num['train'] = X_num[train_ixs]
167
+ dataset.X_num['val'] = X_num[val_ixs]
168
+
169
+ if dataset.X_cat is not None:
170
+ X_cat = np.concatenate([dataset.X_cat['train'], dataset.X_cat['val']], axis=0)
171
+ dataset.X_cat['train'] = X_cat[train_ixs]
172
+ dataset.X_cat['val'] = X_cat[val_ixs]
173
+
174
+ return dataset
175
+
176
+ def num_process_nans(dataset: Dataset, policy: Optional[NumNanPolicy]) -> Dataset:
177
+ assert dataset.X_num is not None
178
+ nan_masks = {k: np.isnan(v) for k, v in dataset.X_num.items()}
179
+ if not any(x.any() for x in nan_masks.values()): # type: ignore[code]
180
+ assert policy is None
181
+ return dataset
182
+
183
+ assert policy is not None
184
+ if policy == 'drop-rows':
185
+ valid_masks = {k: ~v.any(1) for k, v in nan_masks.items()}
186
+ assert valid_masks[
187
+ 'test'
188
+ ].all(), 'Cannot drop test rows, since this will affect the final metrics.'
189
+ new_data = {}
190
+ for data_name in ['X_num', 'X_cat', 'y']:
191
+ data_dict = getattr(dataset, data_name)
192
+ if data_dict is not None:
193
+ new_data[data_name] = {
194
+ k: v[valid_masks[k]] for k, v in data_dict.items()
195
+ }
196
+ dataset = replace(dataset, **new_data)
197
+ elif policy == 'mean':
198
+ new_values = np.nanmean(dataset.X_num['train'], axis=0)
199
+ X_num = deepcopy(dataset.X_num)
200
+ for k, v in X_num.items():
201
+ num_nan_indices = np.where(nan_masks[k])
202
+ v[num_nan_indices] = np.take(new_values, num_nan_indices[1])
203
+ dataset = replace(dataset, X_num=X_num)
204
+ else:
205
+ assert util.raise_unknown('policy', policy)
206
+ return dataset
207
+
208
+
209
+ # Inspired by: https://github.com/yandex-research/rtdl/blob/a4c93a32b334ef55d2a0559a4407c8306ffeeaee/lib/data.py#L20
210
+ def normalize(
211
+ X: ArrayDict, normalization: Normalization, seed: Optional[int], return_normalizer : bool = False
212
+ ) -> ArrayDict:
213
+ X_train = X['train']
214
+ if normalization == 'standard':
215
+ normalizer = sklearn.preprocessing.StandardScaler()
216
+ elif normalization == 'minmax':
217
+ normalizer = sklearn.preprocessing.MinMaxScaler()
218
+ elif normalization == 'quantile':
219
+ normalizer = sklearn.preprocessing.QuantileTransformer(
220
+ output_distribution='normal',
221
+ n_quantiles=max(min(X['train'].shape[0] // 30, 1000), 10),
222
+ subsample=int(1e9),
223
+ random_state=seed,
224
+ )
225
+ # noise = 1e-3
226
+ # if noise > 0:
227
+ # assert seed is not None
228
+ # stds = np.std(X_train, axis=0, keepdims=True)
229
+ # noise_std = noise / np.maximum(stds, noise) # type: ignore[code]
230
+ # X_train = X_train + noise_std * np.random.default_rng(seed).standard_normal(
231
+ # X_train.shape
232
+ # )
233
+ else:
234
+ util.raise_unknown('normalization', normalization)
235
+ normalizer.fit(X_train)
236
+ if return_normalizer:
237
+ return {k: normalizer.transform(v) for k, v in X.items()}, normalizer
238
+ return {k: normalizer.transform(v) for k, v in X.items()}
239
+
240
+
241
+ def cat_process_nans(X: ArrayDict, policy: Optional[CatNanPolicy]) -> ArrayDict:
242
+ assert X is not None
243
+ nan_masks = {k: np.asarray(v == CAT_MISSING_VALUE) for k, v in X.items()}
244
+ if any(np.asarray(x).any() for x in nan_masks.values()): # type: ignore[code]
245
+ if policy is None:
246
+ X_new = X
247
+ elif policy == 'most_frequent':
248
+ imputer = SimpleImputer(missing_values=CAT_MISSING_VALUE, strategy=policy) # type: ignore[code]
249
+ imputer.fit(X['train'])
250
+ X_new = {k: cast(np.ndarray, imputer.transform(v)) for k, v in X.items()}
251
+ else:
252
+ util.raise_unknown('categorical NaN policy', policy)
253
+ else:
254
+ assert policy is None
255
+ X_new = X
256
+ return X_new
257
+
258
+
259
+ def cat_drop_rare(X: ArrayDict, min_frequency: float) -> ArrayDict:
260
+ assert 0.0 < min_frequency < 1.0
261
+ min_count = round(len(X['train']) * min_frequency)
262
+ X_new = {x: [] for x in X}
263
+ for column_idx in range(X['train'].shape[1]):
264
+ counter = Counter(X['train'][:, column_idx].tolist())
265
+ popular_categories = {k for k, v in counter.items() if v >= min_count}
266
+ for part in X_new:
267
+ X_new[part].append(
268
+ [
269
+ (x if x in popular_categories else CAT_RARE_VALUE)
270
+ for x in X[part][:, column_idx].tolist()
271
+ ]
272
+ )
273
+ return {k: np.array(v).T for k, v in X_new.items()}
274
+
275
+
276
+ def cat_encode(
277
+ X: ArrayDict,
278
+ encoding: Optional[CatEncoding],
279
+ y_train: Optional[np.ndarray],
280
+ seed: Optional[int],
281
+ return_encoder : bool = False
282
+ ) -> Tuple[ArrayDict, bool, Optional[Any]]: # (X, is_converted_to_numerical)
283
+ if encoding != 'counter':
284
+ y_train = None
285
+
286
+ # Step 1. Map strings to 0-based ranges
287
+
288
+ if encoding is None:
289
+ unknown_value = np.iinfo('int64').max - 3
290
+ oe = sklearn.preprocessing.OrdinalEncoder(
291
+ handle_unknown='use_encoded_value', # type: ignore[code]
292
+ unknown_value=unknown_value, # type: ignore[code]
293
+ dtype='int64', # type: ignore[code]
294
+ ).fit(X['train'])
295
+ encoder = make_pipeline(oe)
296
+ encoder.fit(X['train'])
297
+ X = {k: encoder.transform(v) for k, v in X.items()}
298
+ max_values = X['train'].max(axis=0)
299
+ for part in X.keys():
300
+ if part == 'train': continue
301
+ for column_idx in range(X[part].shape[1]):
302
+ X[part][X[part][:, column_idx] == unknown_value, column_idx] = (
303
+ max_values[column_idx] + 1
304
+ )
305
+ if return_encoder:
306
+ return (X, False, encoder)
307
+ return (X, False)
308
+
309
+ # Step 2. Encode.
310
+
311
+ elif encoding == 'one-hot':
312
+ ohe = sklearn.preprocessing.OneHotEncoder(
313
+ handle_unknown='ignore', sparse=False, dtype=np.float32 # type: ignore[code]
314
+ )
315
+ encoder = make_pipeline(ohe)
316
+
317
+ # encoder.steps.append(('ohe', ohe))
318
+ encoder.fit(X['train'])
319
+ X = {k: encoder.transform(v) for k, v in X.items()}
320
+ elif encoding == 'counter':
321
+ assert y_train is not None
322
+ assert seed is not None
323
+ loe = LeaveOneOutEncoder(sigma=0.1, random_state=seed, return_df=False)
324
+ encoder.steps.append(('loe', loe))
325
+ encoder.fit(X['train'], y_train)
326
+ X = {k: encoder.transform(v).astype('float32') for k, v in X.items()} # type: ignore[code]
327
+ if not isinstance(X['train'], pd.DataFrame):
328
+ X = {k: v.values for k, v in X.items()} # type: ignore[code]
329
+ else:
330
+ util.raise_unknown('encoding', encoding)
331
+
332
+ if return_encoder:
333
+ return X, True, encoder # type: ignore[code]
334
+ return (X, True)
335
+
336
+
337
+ def build_target(
338
+ y: ArrayDict, policy: Optional[YPolicy], task_type: TaskType
339
+ ) -> Tuple[ArrayDict, Dict[str, Any]]:
340
+ info: Dict[str, Any] = {'policy': policy}
341
+ if policy is None:
342
+ pass
343
+ elif policy == 'default':
344
+ if task_type == TaskType.REGRESSION:
345
+ mean, std = float(y['train'].mean()), float(y['train'].std())
346
+ y = {k: (v - mean) / std for k, v in y.items()}
347
+ info['mean'] = mean
348
+ info['std'] = std
349
+ else:
350
+ util.raise_unknown('policy', policy)
351
+ return y, info
352
+
353
+
354
+ @dataclass(frozen=True)
355
+ class Transformations:
356
+ seed: int = 0
357
+ normalization: Optional[Normalization] = None
358
+ num_nan_policy: Optional[NumNanPolicy] = None
359
+ cat_nan_policy: Optional[CatNanPolicy] = None
360
+ cat_min_frequency: Optional[float] = None
361
+ cat_encoding: Optional[CatEncoding] = None
362
+ y_policy: Optional[YPolicy] = 'default'
363
+
364
+
365
+ def transform_dataset(
366
+ dataset: Dataset,
367
+ transformations: Transformations,
368
+ cache_dir: Optional[Path],
369
+ return_transforms: bool = False
370
+ ) -> Dataset:
371
+ # WARNING: the order of transformations matters. Moreover, the current
372
+ # implementation is not ideal in that sense.
373
+ if cache_dir is not None:
374
+ transformations_md5 = hashlib.md5(
375
+ str(transformations).encode('utf-8')
376
+ ).hexdigest()
377
+ transformations_str = '__'.join(map(str, astuple(transformations)))
378
+ cache_path = (
379
+ cache_dir / f'cache__{transformations_str}__{transformations_md5}.pickle'
380
+ )
381
+ if cache_path.exists():
382
+ cache_transformations, value = util.load_pickle(cache_path)
383
+ if transformations == cache_transformations:
384
+ print(
385
+ f"Using cached features: {cache_dir.name + '/' + cache_path.name}"
386
+ )
387
+ return value
388
+ else:
389
+ raise RuntimeError(f'Hash collision for {cache_path}')
390
+ else:
391
+ cache_path = None
392
+
393
+ if dataset.X_num is not None:
394
+ dataset = num_process_nans(dataset, transformations.num_nan_policy)
395
+
396
+ num_transform = None
397
+ cat_transform = None
398
+ X_num = dataset.X_num
399
+
400
+ if X_num is not None and transformations.normalization is not None:
401
+ X_num, num_transform = normalize(
402
+ X_num,
403
+ transformations.normalization,
404
+ transformations.seed,
405
+ return_normalizer=True
406
+ )
407
+ num_transform = num_transform
408
+
409
+ if dataset.X_cat is None:
410
+ assert transformations.cat_nan_policy is None
411
+ assert transformations.cat_min_frequency is None
412
+ # assert transformations.cat_encoding is None
413
+ X_cat = None
414
+ else:
415
+ X_cat = cat_process_nans(dataset.X_cat, transformations.cat_nan_policy)
416
+ if transformations.cat_min_frequency is not None:
417
+ X_cat = cat_drop_rare(X_cat, transformations.cat_min_frequency)
418
+ X_cat, is_num, cat_transform = cat_encode(
419
+ X_cat,
420
+ transformations.cat_encoding,
421
+ dataset.y['train'],
422
+ transformations.seed,
423
+ return_encoder=True
424
+ )
425
+ if is_num:
426
+ X_num = (
427
+ X_cat
428
+ if X_num is None
429
+ else {x: np.hstack([X_num[x], X_cat[x]]) for x in X_num}
430
+ )
431
+ X_cat = None
432
+
433
+ y, y_info = build_target(dataset.y, transformations.y_policy, dataset.task_type)
434
+
435
+ dataset = replace(dataset, X_num=X_num, X_cat=X_cat, y=y, y_info=y_info)
436
+ dataset.num_transform = num_transform
437
+ dataset.cat_transform = cat_transform
438
+
439
+ if cache_path is not None:
440
+ util.dump_pickle((transformations, dataset), cache_path)
441
+ # if return_transforms:
442
+ # return dataset, num_transform, cat_transform
443
+ return dataset
444
+
445
+
446
+ def build_dataset(
447
+ path: Union[str, Path],
448
+ transformations: Transformations,
449
+ cache: bool
450
+ ) -> Dataset:
451
+ path = Path(path)
452
+ dataset = Dataset.from_dir(path)
453
+ return transform_dataset(dataset, transformations, path if cache else None)
454
+
455
+
456
+ def prepare_tensors(
457
+ dataset: Dataset, device: Union[str, torch.device]
458
+ ) -> Tuple[Optional[TensorDict], Optional[TensorDict], TensorDict]:
459
+ X_num, X_cat, Y = (
460
+ None if x is None else {k: torch.as_tensor(v) for k, v in x.items()}
461
+ for x in [dataset.X_num, dataset.X_cat, dataset.y]
462
+ )
463
+ if device.type != 'cpu':
464
+ X_num, X_cat, Y = (
465
+ None if x is None else {k: v.to(device) for k, v in x.items()}
466
+ for x in [X_num, X_cat, Y]
467
+ )
468
+ assert X_num is not None
469
+ assert Y is not None
470
+ if not dataset.is_multiclass:
471
+ Y = {k: v.float() for k, v in Y.items()}
472
+ return X_num, X_cat, Y
473
+
474
+ ###############
475
+ ## DataLoader##
476
+ ###############
477
+
478
+ class TabDataset(torch.utils.data.Dataset):
479
+ def __init__(
480
+ self, dataset : Dataset, split : Literal['train', 'val', 'test']
481
+ ):
482
+ super().__init__()
483
+
484
+ self.X_num = torch.from_numpy(dataset.X_num[split]) if dataset.X_num is not None else None
485
+ self.X_cat = torch.from_numpy(dataset.X_cat[split]) if dataset.X_cat is not None else None
486
+ self.y = torch.from_numpy(dataset.y[split])
487
+
488
+ assert self.y is not None
489
+ assert self.X_num is not None or self.X_cat is not None
490
+
491
+ def __len__(self):
492
+ return len(self.y)
493
+
494
+ def __getitem__(self, idx):
495
+ out_dict = {
496
+ 'y': self.y[idx].long() if self.y is not None else None,
497
+ }
498
+
499
+ x = np.empty((0,))
500
+ if self.X_num is not None:
501
+ x = self.X_num[idx]
502
+ if self.X_cat is not None:
503
+ x = torch.cat([x, self.X_cat[idx]], dim=0)
504
+ return x.float(), out_dict
505
+
506
+ def prepare_dataloader(
507
+ dataset : Dataset,
508
+ split : str,
509
+ batch_size: int,
510
+ ):
511
+
512
+ torch_dataset = TabDataset(dataset, split)
513
+ loader = torch.utils.data.DataLoader(
514
+ torch_dataset,
515
+ batch_size=batch_size,
516
+ shuffle=(split == 'train'),
517
+ num_workers=1,
518
+ )
519
+ while True:
520
+ yield from loader
521
+
522
+ def prepare_torch_dataloader(
523
+ dataset : Dataset,
524
+ split : str,
525
+ shuffle : bool,
526
+ batch_size: int,
527
+ ) -> torch.utils.data.DataLoader:
528
+
529
+ torch_dataset = TabDataset(dataset, split)
530
+ loader = torch.utils.data.DataLoader(torch_dataset, batch_size=batch_size, shuffle=shuffle, num_workers=1)
531
+
532
+ return loader
533
+
534
+ def dataset_from_csv(paths : Dict[str, str], cat_features, target, T):
535
+ assert 'train' in paths
536
+ y = {}
537
+ X_num = {}
538
+ X_cat = {} if len(cat_features) else None
539
+ for split in paths.keys():
540
+ df = pd.read_csv(paths[split])
541
+ y[split] = df[target].to_numpy().astype(float)
542
+ if X_cat is not None:
543
+ X_cat[split] = df[cat_features].to_numpy().astype(str)
544
+ X_num[split] = df.drop(cat_features + [target], axis=1).to_numpy().astype(float)
545
+
546
+ dataset = Dataset(X_num, X_cat, y, {}, None, len(np.unique(y['train'])))
547
+ return transform_dataset(dataset, T, None)
548
+
549
+ class FastTensorDataLoader:
550
+ """
551
+ A DataLoader-like object for a set of tensors that can be much faster than
552
+ TensorDataset + DataLoader because dataloader grabs individual indices of
553
+ the dataset and calls cat (slow).
554
+ Source: https://discuss.pytorch.org/t/dataloader-much-slower-than-manual-batching/27014/6
555
+ """
556
+ def __init__(self, *tensors, batch_size=32, shuffle=False):
557
+ """
558
+ Initialize a FastTensorDataLoader.
559
+ :param *tensors: tensors to store. Must have the same length @ dim 0.
560
+ :param batch_size: batch size to load.
561
+ :param shuffle: if True, shuffle the data *in-place* whenever an
562
+ iterator is created out of this object.
563
+ :returns: A FastTensorDataLoader.
564
+ """
565
+ assert all(t.shape[0] == tensors[0].shape[0] for t in tensors)
566
+ self.tensors = tensors
567
+
568
+ self.dataset_len = self.tensors[0].shape[0]
569
+ self.batch_size = batch_size
570
+ self.shuffle = shuffle
571
+
572
+ # Calculate # batches
573
+ n_batches, remainder = divmod(self.dataset_len, self.batch_size)
574
+ if remainder > 0:
575
+ n_batches += 1
576
+ self.n_batches = n_batches
577
+ def __iter__(self):
578
+ if self.shuffle:
579
+ r = torch.randperm(self.dataset_len)
580
+ self.tensors = [t[r] for t in self.tensors]
581
+ self.i = 0
582
+ return self
583
+
584
+ def __next__(self):
585
+ if self.i >= self.dataset_len:
586
+ raise StopIteration
587
+ batch = tuple(t[self.i:self.i+self.batch_size] for t in self.tensors)
588
+ self.i += self.batch_size
589
+ return batch
590
+
591
+ def __len__(self):
592
+ return self.n_batches
593
+
594
+ def prepare_fast_dataloader(
595
+ D : Dataset,
596
+ split : str,
597
+ batch_size: int
598
+ ):
599
+ if D.X_cat is not None:
600
+ if D.X_num is not None:
601
+ X = torch.from_numpy(np.concatenate([D.X_num[split], D.X_cat[split]], axis=1)).float()
602
+ else:
603
+ X = torch.from_numpy(D.X_cat[split]).float()
604
+ else:
605
+ X = torch.from_numpy(D.X_num[split]).float()
606
+ y = torch.from_numpy(D.y[split])
607
+ dataloader = FastTensorDataLoader(X, y, batch_size=batch_size, shuffle=(split=='train'))
608
+ while True:
609
+ yield from dataloader
610
+
611
+ def prepare_fast_torch_dataloader(
612
+ D : Dataset,
613
+ split : str,
614
+ batch_size: int
615
+ ):
616
+ if D.X_cat is not None:
617
+ X = torch.from_numpy(np.concatenate([D.X_num[split], D.X_cat[split]], axis=1)).float()
618
+ else:
619
+ X = torch.from_numpy(D.X_num[split]).float()
620
+ y = torch.from_numpy(D.y[split])
621
+ dataloader = FastTensorDataLoader(X, y, batch_size=batch_size, shuffle=(split=='train'))
622
+ return dataloader
623
+
624
+ def round_columns(X_real, X_synth, columns):
625
+ for col in columns:
626
+ uniq = np.unique(X_real[:,col])
627
+ dist = cdist(X_synth[:, col][:, np.newaxis].astype(float), uniq[:, np.newaxis].astype(float))
628
+ X_synth[:, col] = uniq[dist.argmin(axis=1)]
629
+ return X_synth
630
+
631
+ def concat_features(D : Dataset):
632
+ if D.X_num is None:
633
+ assert D.X_cat is not None
634
+ X = {k: pd.DataFrame(v, columns=range(D.n_features)) for k, v in D.X_cat.items()}
635
+ elif D.X_cat is None:
636
+ assert D.X_num is not None
637
+ X = {k: pd.DataFrame(v, columns=range(D.n_features)) for k, v in D.X_num.items()}
638
+ else:
639
+ X = {
640
+ part: pd.concat(
641
+ [
642
+ pd.DataFrame(D.X_num[part], columns=range(D.n_num_features)),
643
+ pd.DataFrame(
644
+ D.X_cat[part],
645
+ columns=range(D.n_num_features, D.n_features),
646
+ ),
647
+ ],
648
+ axis=1,
649
+ )
650
+ for part in D.y.keys()
651
+ }
652
+
653
+ return X
654
+
655
+ def concat_to_pd(X_num, X_cat, y):
656
+ if X_num is None:
657
+ return pd.concat([
658
+ pd.DataFrame(X_cat, columns=list(range(X_cat.shape[1]))),
659
+ pd.DataFrame(y, columns=['y'])
660
+ ], axis=1)
661
+ if X_cat is not None:
662
+ return pd.concat([
663
+ pd.DataFrame(X_num, columns=list(range(X_num.shape[1]))),
664
+ pd.DataFrame(X_cat, columns=list(range(X_num.shape[1], X_num.shape[1] + X_cat.shape[1]))),
665
+ pd.DataFrame(y, columns=['y'])
666
+ ], axis=1)
667
+ return pd.concat([
668
+ pd.DataFrame(X_num, columns=list(range(X_num.shape[1]))),
669
+ pd.DataFrame(y, columns=['y'])
670
+ ], axis=1)
671
+
672
+ def read_pure_data(path, split='train'):
673
+ y = np.load(os.path.join(path, f'y_{split}.npy'), allow_pickle=True)
674
+ X_num = None
675
+ X_cat = None
676
+ if os.path.exists(os.path.join(path, f'X_num_{split}.npy')):
677
+ X_num = np.load(os.path.join(path, f'X_num_{split}.npy'), allow_pickle=True)
678
+ if os.path.exists(os.path.join(path, f'X_cat_{split}.npy')):
679
+ X_cat = np.load(os.path.join(path, f'X_cat_{split}.npy'), allow_pickle=True)
680
+
681
+ return X_num, X_cat, y
682
+
683
+ def read_changed_val(path, val_size=0.2):
684
+ path = Path(path)
685
+ X_num_train, X_cat_train, y_train = read_pure_data(path, 'train')
686
+ X_num_val, X_cat_val, y_val = read_pure_data(path, 'val')
687
+ is_regression = load_json(path / 'info.json')['task_type'] == 'regression'
688
+
689
+ y = np.concatenate([y_train, y_val], axis=0)
690
+
691
+ ixs = np.arange(y.shape[0])
692
+ if is_regression:
693
+ train_ixs, val_ixs = train_test_split(ixs, test_size=val_size, random_state=777)
694
+ else:
695
+ train_ixs, val_ixs = train_test_split(ixs, test_size=val_size, random_state=777, stratify=y)
696
+ y_train = y[train_ixs]
697
+ y_val = y[val_ixs]
698
+
699
+ if X_num_train is not None:
700
+ X_num = np.concatenate([X_num_train, X_num_val], axis=0)
701
+ X_num_train = X_num[train_ixs]
702
+ X_num_val = X_num[val_ixs]
703
+
704
+ if X_cat_train is not None:
705
+ X_cat = np.concatenate([X_cat_train, X_cat_val], axis=0)
706
+ X_cat_train = X_cat[train_ixs]
707
+ X_cat_val = X_cat[val_ixs]
708
+
709
+ return X_num_train, X_cat_train, y_train, X_num_val, X_cat_val, y_val
710
+
711
+ #############
712
+
713
+ def load_dataset_info(dataset_dir_name: str) -> Dict[str, Any]:
714
+ path = Path("data/" + dataset_dir_name)
715
+ info = util.load_json(path / 'info.json')
716
+ info['size'] = info['train_size'] + info['val_size'] + info['test_size']
717
+ info['n_features'] = info['n_num_features'] + info['n_cat_features']
718
+ info['path'] = path
719
+ return info
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/deep.py ADDED
@@ -0,0 +1,168 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import statistics
2
+ from dataclasses import dataclass
3
+ from typing import Any, Callable, Literal, cast
4
+
5
+ import rtdl
6
+ import torch
7
+ import torch.nn as nn
8
+ import torch.nn.functional as F
9
+ import torch.optim as optim
10
+ import zero
11
+ from torch import Tensor
12
+
13
+ from .util import TaskType
14
+
15
+
16
+ def cos_sin(x: Tensor) -> Tensor:
17
+ return torch.cat([torch.cos(x), torch.sin(x)], -1)
18
+
19
+
20
+ @dataclass
21
+ class PeriodicOptions:
22
+ n: int # the output size is 2 * n
23
+ sigma: float
24
+ trainable: bool
25
+ initialization: Literal['log-linear', 'normal']
26
+
27
+
28
+ class Periodic(nn.Module):
29
+ def __init__(self, n_features: int, options: PeriodicOptions) -> None:
30
+ super().__init__()
31
+ if options.initialization == 'log-linear':
32
+ coefficients = options.sigma ** (torch.arange(options.n) / options.n)
33
+ coefficients = coefficients[None].repeat(n_features, 1)
34
+ else:
35
+ assert options.initialization == 'normal'
36
+ coefficients = torch.normal(0.0, options.sigma, (n_features, options.n))
37
+ if options.trainable:
38
+ self.coefficients = nn.Parameter(coefficients) # type: ignore[code]
39
+ else:
40
+ self.register_buffer('coefficients', coefficients)
41
+
42
+ def forward(self, x: Tensor) -> Tensor:
43
+ assert x.ndim == 2
44
+ return cos_sin(2 * torch.pi * self.coefficients[None] * x[..., None])
45
+
46
+
47
+ def get_n_parameters(m: nn.Module):
48
+ return sum(x.numel() for x in m.parameters() if x.requires_grad)
49
+
50
+
51
+ def get_loss_fn(task_type: TaskType) -> Callable[..., Tensor]:
52
+ return (
53
+ F.binary_cross_entropy_with_logits
54
+ if task_type == TaskType.BINCLASS
55
+ else F.cross_entropy
56
+ if task_type == TaskType.MULTICLASS
57
+ else F.mse_loss
58
+ )
59
+
60
+
61
+ def default_zero_weight_decay_condition(module_name, module, parameter_name, parameter):
62
+ del module_name, parameter
63
+ return parameter_name.endswith('bias') or isinstance(
64
+ module,
65
+ (
66
+ nn.BatchNorm1d,
67
+ nn.LayerNorm,
68
+ nn.InstanceNorm1d,
69
+ rtdl.CLSToken,
70
+ rtdl.NumericalFeatureTokenizer,
71
+ rtdl.CategoricalFeatureTokenizer,
72
+ Periodic,
73
+ ),
74
+ )
75
+
76
+
77
+ def split_parameters_by_weight_decay(
78
+ model: nn.Module, zero_weight_decay_condition=default_zero_weight_decay_condition
79
+ ) -> list[dict[str, Any]]:
80
+ parameters_info = {}
81
+ for module_name, module in model.named_modules():
82
+ for parameter_name, parameter in module.named_parameters():
83
+ full_parameter_name = (
84
+ f'{module_name}.{parameter_name}' if module_name else parameter_name
85
+ )
86
+ parameters_info.setdefault(full_parameter_name, ([], parameter))[0].append(
87
+ zero_weight_decay_condition(
88
+ module_name, module, parameter_name, parameter
89
+ )
90
+ )
91
+ params_with_wd = {'params': []}
92
+ params_without_wd = {'params': [], 'weight_decay': 0.0}
93
+ for full_parameter_name, (results, parameter) in parameters_info.items():
94
+ (params_without_wd if any(results) else params_with_wd)['params'].append(
95
+ parameter
96
+ )
97
+ return [params_with_wd, params_without_wd]
98
+
99
+
100
+ def make_optimizer(
101
+ config: dict[str, Any],
102
+ parameter_groups,
103
+ ) -> optim.Optimizer:
104
+ if config['optimizer'] == 'FT-Transformer-default':
105
+ return optim.AdamW(parameter_groups, lr=1e-4, weight_decay=1e-5)
106
+ return getattr(optim, config['optimizer'])(
107
+ parameter_groups,
108
+ **{x: config[x] for x in ['lr', 'weight_decay', 'momentum'] if x in config},
109
+ )
110
+
111
+
112
+ def get_lr(optimizer: optim.Optimizer) -> float:
113
+ return next(iter(optimizer.param_groups))['lr']
114
+
115
+
116
+ def is_oom_exception(err: RuntimeError) -> bool:
117
+ return any(
118
+ x in str(err)
119
+ for x in [
120
+ 'CUDA out of memory',
121
+ 'CUBLAS_STATUS_ALLOC_FAILED',
122
+ 'CUDA error: out of memory',
123
+ ]
124
+ )
125
+
126
+
127
+ def train_with_auto_virtual_batch(
128
+ optimizer,
129
+ loss_fn,
130
+ step,
131
+ batch,
132
+ chunk_size: int,
133
+ ) -> tuple[Tensor, int]:
134
+ batch_size = len(batch)
135
+ random_state = zero.random.get_state()
136
+ loss = None
137
+ while chunk_size != 0:
138
+ try:
139
+ zero.random.set_state(random_state)
140
+ optimizer.zero_grad()
141
+ if batch_size <= chunk_size:
142
+ loss = loss_fn(*step(batch))
143
+ loss.backward()
144
+ else:
145
+ loss = None
146
+ for chunk in zero.iter_batches(batch, chunk_size):
147
+ chunk_loss = loss_fn(*step(chunk))
148
+ chunk_loss = chunk_loss * (len(chunk) / batch_size)
149
+ chunk_loss.backward()
150
+ if loss is None:
151
+ loss = chunk_loss.detach()
152
+ else:
153
+ loss += chunk_loss.detach()
154
+ except RuntimeError as err:
155
+ if not is_oom_exception(err):
156
+ raise
157
+ chunk_size //= 2
158
+ else:
159
+ break
160
+ if not chunk_size:
161
+ raise RuntimeError('Not enough memory even for batch_size=1')
162
+ optimizer.step()
163
+ return cast(Tensor, loss), chunk_size
164
+
165
+
166
+ def process_epoch_losses(losses: list[Tensor]) -> tuple[list[float], float]:
167
+ losses_ = torch.stack(losses).tolist()
168
+ return losses_, statistics.mean(losses_)
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/env.py ADDED
@@ -0,0 +1,39 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ """
2
+ Have not used in TabDDPM project.
3
+ """
4
+
5
+ import datetime
6
+ import os
7
+ import shutil
8
+ import typing as ty
9
+ from pathlib import Path
10
+
11
+ PROJ = Path('tab-ddpm/').absolute().resolve()
12
+ EXP = PROJ / 'exp'
13
+ DATA = PROJ / 'data'
14
+
15
+
16
+ def get_path(path: ty.Union[str, Path]) -> Path:
17
+ if isinstance(path, str):
18
+ path = Path(path)
19
+ if not path.is_absolute():
20
+ path = PROJ / path
21
+ return path.resolve()
22
+
23
+
24
+ def get_relative_path(path: ty.Union[str, Path]) -> Path:
25
+ return get_path(path).relative_to(PROJ)
26
+
27
+
28
+ def duplicate_path(
29
+ src: ty.Union[str, Path], alternative_project_dir: ty.Union[str, Path]
30
+ ) -> None:
31
+ src = get_path(src)
32
+ alternative_project_dir = get_path(alternative_project_dir)
33
+ dst = alternative_project_dir / src.relative_to(PROJ)
34
+ dst.parent.mkdir(parents=True, exist_ok=True)
35
+ if dst.exists():
36
+ dst = dst.with_name(
37
+ dst.name + '_' + datetime.datetime.now().strftime('%Y%m%dT%H%M%S')
38
+ )
39
+ (shutil.copytree if src.is_dir() else shutil.copyfile)(src, dst)
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/metrics.py ADDED
@@ -0,0 +1,158 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import enum
2
+ from typing import Any, Optional, Tuple, Dict, Union, cast
3
+ from functools import partial
4
+
5
+ import numpy as np
6
+ import scipy.special
7
+ import sklearn.metrics as skm
8
+
9
+ from . import util
10
+ from .util import TaskType
11
+
12
+
13
+ class PredictionType(enum.Enum):
14
+ LOGITS = 'logits'
15
+ PROBS = 'probs'
16
+
17
+ class MetricsReport:
18
+ def __init__(self, report: dict, task_type: TaskType):
19
+ self._res = {k: {} for k in report.keys()}
20
+ if task_type in (TaskType.BINCLASS, TaskType.MULTICLASS):
21
+ self._metrics_names = ["acc", "f1"]
22
+ for k in report.keys():
23
+ self._res[k]["acc"] = report[k]["accuracy"]
24
+ self._res[k]["f1"] = report[k]["macro avg"]["f1-score"]
25
+ if task_type == TaskType.BINCLASS:
26
+ self._res[k]["roc_auc"] = report[k]["roc_auc"]
27
+ self._metrics_names.append("roc_auc")
28
+
29
+ elif task_type == TaskType.REGRESSION:
30
+ self._metrics_names = ["r2", "rmse"]
31
+ for k in report.keys():
32
+ self._res[k]["r2"] = report[k]["r2"]
33
+ self._res[k]["rmse"] = report[k]["rmse"]
34
+ else:
35
+ raise "Unknown TaskType!"
36
+
37
+ def get_splits_names(self) -> list[str]:
38
+ return self._res.keys()
39
+
40
+ def get_metrics_names(self) -> list[str]:
41
+ return self._metrics_names
42
+
43
+ def get_metric(self, split: str, metric: str) -> float:
44
+ return self._res[split][metric]
45
+
46
+ def get_val_score(self) -> float:
47
+ return self._res["val"]["r2"] if "r2" in self._res["val"] else self._res["val"]["f1"]
48
+
49
+ def get_test_score(self) -> float:
50
+ return self._res["test"]["r2"] if "r2" in self._res["test"] else self._res["test"]["f1"]
51
+
52
+ def print_metrics(self) -> None:
53
+ res = {
54
+ "val": {k: np.around(self._res["val"][k], 4) for k in self._res["val"]},
55
+ "test": {k: np.around(self._res["test"][k], 4) for k in self._res["test"]}
56
+ }
57
+
58
+ print("*"*100)
59
+ print("[val]")
60
+ print(res["val"])
61
+ print("[test]")
62
+ print(res["test"])
63
+
64
+ return res
65
+
66
+ class SeedsMetricsReport:
67
+ def __init__(self):
68
+ self._reports = []
69
+
70
+ def add_report(self, report: MetricsReport) -> None:
71
+ self._reports.append(report)
72
+
73
+ def get_mean_std(self) -> dict:
74
+ res = {k: {} for k in ["train", "val", "test"]}
75
+ for split in self._reports[0].get_splits_names():
76
+ for metric in self._reports[0].get_metrics_names():
77
+ res[split][metric] = [x.get_metric(split, metric) for x in self._reports]
78
+
79
+ agg_res = {k: {} for k in ["train", "val", "test"]}
80
+ for split in self._reports[0].get_splits_names():
81
+ for metric in self._reports[0].get_metrics_names():
82
+ for k, f in [("count", len), ("mean", np.mean), ("std", np.std)]:
83
+ agg_res[split][f"{metric}-{k}"] = f(res[split][metric])
84
+ self._res = res
85
+ self._agg_res = agg_res
86
+
87
+ return agg_res
88
+
89
+ def print_result(self) -> dict:
90
+ res = {split: {k: float(np.around(self._agg_res[split][k], 4)) for k in self._agg_res[split]} for split in ["val", "test"]}
91
+ print("="*100)
92
+ print("EVAL RESULTS:")
93
+ print("[val]")
94
+ print(res["val"])
95
+ print("[test]")
96
+ print(res["test"])
97
+ print("="*100)
98
+ return res
99
+
100
+ def calculate_rmse(
101
+ y_true: np.ndarray, y_pred: np.ndarray, std: Optional[float]
102
+ ) -> float:
103
+ rmse = skm.mean_squared_error(y_true, y_pred) ** 0.5
104
+ if std is not None:
105
+ rmse *= std
106
+ return rmse
107
+
108
+
109
+ def _get_labels_and_probs(
110
+ y_pred: np.ndarray, task_type: TaskType, prediction_type: Optional[PredictionType]
111
+ ) -> Tuple[np.ndarray, Optional[np.ndarray]]:
112
+ assert task_type in (TaskType.BINCLASS, TaskType.MULTICLASS)
113
+
114
+ if prediction_type is None:
115
+ return y_pred, None
116
+
117
+ if prediction_type == PredictionType.LOGITS:
118
+ probs = (
119
+ scipy.special.expit(y_pred)
120
+ if task_type == TaskType.BINCLASS
121
+ else scipy.special.softmax(y_pred, axis=1)
122
+ )
123
+ elif prediction_type == PredictionType.PROBS:
124
+ probs = y_pred
125
+ else:
126
+ util.raise_unknown('prediction_type', prediction_type)
127
+
128
+ assert probs is not None
129
+ labels = np.round(probs) if task_type == TaskType.BINCLASS else probs.argmax(axis=1)
130
+ return labels.astype('int64'), probs
131
+
132
+
133
+ def calculate_metrics(
134
+ y_true: np.ndarray,
135
+ y_pred: np.ndarray,
136
+ task_type: Union[str, TaskType],
137
+ prediction_type: Optional[Union[str, PredictionType]],
138
+ y_info: Dict[str, Any],
139
+ ) -> Dict[str, Any]:
140
+ # Example: calculate_metrics(y_true, y_pred, 'binclass', 'logits', {})
141
+ task_type = TaskType(task_type)
142
+ if prediction_type is not None:
143
+ prediction_type = PredictionType(prediction_type)
144
+
145
+ if task_type == TaskType.REGRESSION:
146
+ assert prediction_type is None
147
+ assert 'std' in y_info
148
+ rmse = calculate_rmse(y_true, y_pred, y_info['std'])
149
+ r2 = skm.r2_score(y_true, y_pred)
150
+ result = {'rmse': rmse, 'r2': r2}
151
+ else:
152
+ labels, probs = _get_labels_and_probs(y_pred, task_type, prediction_type)
153
+ result = cast(
154
+ Dict[str, Any], skm.classification_report(y_true, labels, output_dict=True)
155
+ )
156
+ if task_type == TaskType.BINCLASS:
157
+ result['roc_auc'] = skm.roc_auc_score(y_true, probs)
158
+ return result
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/lib/util.py ADDED
@@ -0,0 +1,433 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import argparse
2
+ import atexit
3
+ import enum
4
+ import json
5
+ import os
6
+ import pickle
7
+ import shutil
8
+ import sys
9
+ import time
10
+ import uuid
11
+ from copy import deepcopy
12
+ from dataclasses import asdict, fields, is_dataclass
13
+ from pathlib import Path
14
+ from pprint import pprint
15
+ from typing import Any, Callable, List, Dict, Type, Optional, Tuple, TypeVar, Union, cast, get_args, get_origin
16
+
17
+ import __main__
18
+ import numpy as np
19
+ import tomli
20
+ import tomli_w
21
+ import torch
22
+ import zero
23
+
24
+ from . import env
25
+
26
+ RawConfig = Dict[str, Any]
27
+ Report = Dict[str, Any]
28
+ T = TypeVar('T')
29
+
30
+
31
+ class Part(enum.Enum):
32
+ TRAIN = 'train'
33
+ VAL = 'val'
34
+ TEST = 'test'
35
+
36
+ def __str__(self) -> str:
37
+ return self.value
38
+
39
+
40
+ class TaskType(enum.Enum):
41
+ BINCLASS = 'binclass'
42
+ MULTICLASS = 'multiclass'
43
+ REGRESSION = 'regression'
44
+
45
+ def __str__(self) -> str:
46
+ return self.value
47
+
48
+
49
+ class Timer(zero.Timer):
50
+ @classmethod
51
+ def launch(cls) -> 'Timer':
52
+ timer = cls()
53
+ timer.run()
54
+ return timer
55
+
56
+
57
+ def update_training_log(training_log, data, metrics):
58
+ def _update(log_part, data_part):
59
+ for k, v in data_part.items():
60
+ if isinstance(v, dict):
61
+ _update(log_part.setdefault(k, {}), v)
62
+ elif isinstance(v, list):
63
+ log_part.setdefault(k, []).extend(v)
64
+ else:
65
+ log_part.setdefault(k, []).append(v)
66
+
67
+ _update(training_log, data)
68
+ transposed_metrics = {}
69
+ for part, part_metrics in metrics.items():
70
+ for metric_name, value in part_metrics.items():
71
+ transposed_metrics.setdefault(metric_name, {})[part] = value
72
+ _update(training_log, transposed_metrics)
73
+
74
+
75
+ def raise_unknown(unknown_what: str, unknown_value: Any):
76
+ raise ValueError(f'Unknown {unknown_what}: {unknown_value}')
77
+
78
+
79
+ def _replace(data, condition, value):
80
+ def do(x):
81
+ if isinstance(x, dict):
82
+ return {k: do(v) for k, v in x.items()}
83
+ elif isinstance(x, list):
84
+ return [do(y) for y in x]
85
+ else:
86
+ return value if condition(x) else x
87
+
88
+ return do(data)
89
+
90
+
91
+ _CONFIG_NONE = '__none__'
92
+
93
+
94
+ def unpack_config(config: RawConfig) -> RawConfig:
95
+ config = cast(RawConfig, _replace(config, lambda x: x == _CONFIG_NONE, None))
96
+ return config
97
+
98
+
99
+ def pack_config(config: RawConfig) -> RawConfig:
100
+ config = cast(RawConfig, _replace(config, lambda x: x is None, _CONFIG_NONE))
101
+ return config
102
+
103
+
104
+ def load_config(path: Union[Path, str]) -> Any:
105
+ with open(path, 'rb') as f:
106
+ return unpack_config(tomli.load(f))
107
+
108
+
109
+ def dump_config(config: Any, path: Union[Path, str]) -> None:
110
+ with open(path, 'wb') as f:
111
+ tomli_w.dump(pack_config(config), f)
112
+ # check that there are no bugs in all these "pack/unpack" things
113
+ assert config == load_config(path)
114
+
115
+
116
+ def load_json(path: Union[Path, str], **kwargs) -> Any:
117
+ return json.loads(Path(path).read_text(), **kwargs)
118
+
119
+
120
+ def dump_json(x: Any, path: Union[Path, str], **kwargs) -> None:
121
+ kwargs.setdefault('indent', 4)
122
+ Path(path).write_text(json.dumps(x, **kwargs) + '\n')
123
+
124
+
125
+ def load_pickle(path: Union[Path, str], **kwargs) -> Any:
126
+ return pickle.loads(Path(path).read_bytes(), **kwargs)
127
+
128
+
129
+ def dump_pickle(x: Any, path: Union[Path, str], **kwargs) -> None:
130
+ Path(path).write_bytes(pickle.dumps(x, **kwargs))
131
+
132
+
133
+ def load(path: Union[Path, str], **kwargs) -> Any:
134
+ return globals()[f'load_{Path(path).suffix[1:]}'](Path(path), **kwargs)
135
+
136
+
137
+ def dump(x: Any, path: Union[Path, str], **kwargs) -> Any:
138
+ return globals()[f'dump_{Path(path).suffix[1:]}'](x, Path(path), **kwargs)
139
+
140
+
141
+ def _get_output_item_path(
142
+ path: Union[str, Path], filename: str, must_exist: bool
143
+ ) -> Path:
144
+ path = env.get_path(path)
145
+ if path.suffix == '.toml':
146
+ path = path.with_suffix('')
147
+ if path.is_dir():
148
+ path = path / filename
149
+ else:
150
+ assert path.name == filename
151
+ assert path.parent.exists()
152
+ if must_exist:
153
+ assert path.exists()
154
+ return path
155
+
156
+
157
+ def load_report(path: Path) -> Report:
158
+ return load_json(_get_output_item_path(path, 'report.json', True))
159
+
160
+
161
+ def dump_report(report: dict, path: Path) -> None:
162
+ dump_json(report, _get_output_item_path(path, 'report.json', False))
163
+
164
+
165
+ def load_predictions(path: Path) -> Dict[str, np.ndarray]:
166
+ with np.load(_get_output_item_path(path, 'predictions.npz', True)) as predictions:
167
+ return {x: predictions[x] for x in predictions}
168
+
169
+
170
+ def dump_predictions(predictions: Dict[str, np.ndarray], path: Path) -> None:
171
+ np.savez(_get_output_item_path(path, 'predictions.npz', False), **predictions)
172
+
173
+
174
+ def dump_metrics(metrics: Dict[str, Any], path: Path) -> None:
175
+ dump_json(metrics, _get_output_item_path(path, 'metrics.json', False))
176
+
177
+
178
+ def load_checkpoint(path: Path, *args, **kwargs) -> Dict[str, np.ndarray]:
179
+ return torch.load(
180
+ _get_output_item_path(path, 'checkpoint.pt', True), *args, **kwargs
181
+ )
182
+
183
+
184
+ def get_device() -> torch.device:
185
+ if torch.cuda.is_available():
186
+ assert os.environ.get('CUDA_VISIBLE_DEVICES') is not None
187
+ return torch.device('cuda:0')
188
+ else:
189
+ return torch.device('cpu')
190
+
191
+
192
+ def _print_sep(c, size=100):
193
+ print(c * size)
194
+
195
+
196
+ def start(
197
+ config_cls: Type[T] = RawConfig,
198
+ argv: Optional[List[str]] = None,
199
+ patch_raw_config: Optional[Callable[[RawConfig], None]] = None,
200
+ ) -> Tuple[T, Path, Report]: # config # output dir # report
201
+ parser = argparse.ArgumentParser()
202
+ parser.add_argument('config', metavar='FILE')
203
+ parser.add_argument('--force', action='store_true')
204
+ parser.add_argument('--continue', action='store_true', dest='continue_')
205
+ if argv is None:
206
+ program = __main__.__file__
207
+ args = parser.parse_args()
208
+ else:
209
+ program = argv[0]
210
+ try:
211
+ args = parser.parse_args(argv[1:])
212
+ except Exception:
213
+ print(
214
+ 'Failed to parse `argv`.'
215
+ ' Remember that the first item of `argv` must be the path (relative to'
216
+ ' the project root) to the script/notebook.'
217
+ )
218
+ raise
219
+ args = parser.parse_args(argv)
220
+
221
+ snapshot_dir = os.environ.get('SNAPSHOT_PATH')
222
+ if snapshot_dir and Path(snapshot_dir).joinpath('CHECKPOINTS_RESTORED').exists():
223
+ assert args.continue_
224
+
225
+ config_path = env.get_path(args.config)
226
+ output_dir = config_path.with_suffix('')
227
+ _print_sep('=')
228
+ print(f'[output] {output_dir}')
229
+ _print_sep('=')
230
+
231
+ assert config_path.exists()
232
+ raw_config = load_config(config_path)
233
+ if patch_raw_config is not None:
234
+ patch_raw_config(raw_config)
235
+ if is_dataclass(config_cls):
236
+ config = from_dict(config_cls, raw_config)
237
+ full_raw_config = asdict(config)
238
+ else:
239
+ assert config_cls is dict
240
+ full_raw_config = config = raw_config
241
+ full_raw_config = asdict(config)
242
+
243
+ if output_dir.exists():
244
+ if args.force:
245
+ print('Removing the existing output and creating a new one...')
246
+ shutil.rmtree(output_dir)
247
+ output_dir.mkdir()
248
+ elif not args.continue_:
249
+ backup_output(output_dir)
250
+ print('The output directory already exists. Done!\n')
251
+ sys.exit()
252
+ elif output_dir.joinpath('DONE').exists():
253
+ backup_output(output_dir)
254
+ print('The "DONE" file already exists. Done!')
255
+ sys.exit()
256
+ else:
257
+ print('Continuing with the existing output...')
258
+ else:
259
+ print('Creating the output...')
260
+ output_dir.mkdir()
261
+
262
+ report = {
263
+ 'program': str(env.get_relative_path(program)),
264
+ 'environment': {},
265
+ 'config': full_raw_config,
266
+ }
267
+ if torch.cuda.is_available(): # type: ignore[code]
268
+ report['environment'].update(
269
+ {
270
+ 'CUDA_VISIBLE_DEVICES': os.environ.get('CUDA_VISIBLE_DEVICES'),
271
+ 'gpus': zero.hardware.get_gpus_info(),
272
+ 'torch.version.cuda': torch.version.cuda,
273
+ 'torch.backends.cudnn.version()': torch.backends.cudnn.version(), # type: ignore[code]
274
+ 'torch.cuda.nccl.version()': torch.cuda.nccl.version(), # type: ignore[code]
275
+ }
276
+ )
277
+ dump_report(report, output_dir)
278
+ dump_json(raw_config, output_dir / 'raw_config.json')
279
+ _print_sep('-')
280
+ pprint(full_raw_config, width=100)
281
+ _print_sep('-')
282
+ return cast(config_cls, config), output_dir, report
283
+
284
+
285
+ _LAST_SNAPSHOT_TIME = None
286
+
287
+
288
+ def backup_output(output_dir: Path) -> None:
289
+ backup_dir = os.environ.get('TMP_OUTPUT_PATH')
290
+ snapshot_dir = os.environ.get('SNAPSHOT_PATH')
291
+ if backup_dir is None:
292
+ assert snapshot_dir is None
293
+ return
294
+ assert snapshot_dir is not None
295
+
296
+ try:
297
+ relative_output_dir = output_dir.relative_to(env.PROJ)
298
+ except ValueError:
299
+ return
300
+
301
+ for dir_ in [backup_dir, snapshot_dir]:
302
+ new_output_dir = dir_ / relative_output_dir
303
+ prev_backup_output_dir = new_output_dir.with_name(new_output_dir.name + '_prev')
304
+ new_output_dir.parent.mkdir(exist_ok=True, parents=True)
305
+ if new_output_dir.exists():
306
+ new_output_dir.rename(prev_backup_output_dir)
307
+ shutil.copytree(output_dir, new_output_dir)
308
+ # the case for evaluate.py which automatically creates configs
309
+ if output_dir.with_suffix('.toml').exists():
310
+ shutil.copyfile(
311
+ output_dir.with_suffix('.toml'), new_output_dir.with_suffix('.toml')
312
+ )
313
+ if prev_backup_output_dir.exists():
314
+ shutil.rmtree(prev_backup_output_dir)
315
+
316
+ global _LAST_SNAPSHOT_TIME
317
+ if _LAST_SNAPSHOT_TIME is None or time.time() - _LAST_SNAPSHOT_TIME > 10 * 60:
318
+ import nirvana_dl.snapshot # type: ignore[code]
319
+
320
+ nirvana_dl.snapshot.dump_snapshot()
321
+ _LAST_SNAPSHOT_TIME = time.time()
322
+ print('The snapshot was saved!')
323
+
324
+
325
+ def _get_scores(metrics: Dict[str, Dict[str, Any]]) -> Optional[Dict[str, float]]:
326
+ return (
327
+ {k: v['score'] for k, v in metrics.items()}
328
+ if 'score' in next(iter(metrics.values()))
329
+ else None
330
+ )
331
+
332
+
333
+ def format_scores(metrics: Dict[str, Dict[str, Any]]) -> str:
334
+ return ' '.join(
335
+ f"[{x}] {metrics[x]['score']:.3f}"
336
+ for x in ['test', 'val', 'train']
337
+ if x in metrics
338
+ )
339
+
340
+
341
+ def finish(output_dir: Path, report: dict) -> None:
342
+ print()
343
+ _print_sep('=')
344
+
345
+ metrics = report.get('metrics')
346
+ if metrics is not None:
347
+ scores = _get_scores(metrics)
348
+ if scores is not None:
349
+ dump_json(scores, output_dir / 'scores.json')
350
+ print(format_scores(metrics))
351
+ _print_sep('-')
352
+
353
+ dump_report(report, output_dir)
354
+ json_output_path = os.environ.get('JSON_OUTPUT_FILE')
355
+ if json_output_path:
356
+ try:
357
+ key = str(output_dir.relative_to(env.PROJ))
358
+ except ValueError:
359
+ pass
360
+ else:
361
+ json_output_path = Path(json_output_path)
362
+ try:
363
+ json_data = json.loads(json_output_path.read_text())
364
+ except (FileNotFoundError, json.decoder.JSONDecodeError):
365
+ json_data = {}
366
+ json_data[key] = load_json(output_dir / 'report.json')
367
+ json_output_path.write_text(json.dumps(json_data, indent=4))
368
+ shutil.copyfile(
369
+ json_output_path,
370
+ os.path.join(os.environ['SNAPSHOT_PATH'], 'json_output.json'),
371
+ )
372
+
373
+ output_dir.joinpath('DONE').touch()
374
+ backup_output(output_dir)
375
+ print(f'Done! | {report.get("time")} | {output_dir}')
376
+ _print_sep('=')
377
+ print()
378
+
379
+
380
+ def from_dict(datacls: Type[T], data: dict) -> T:
381
+ assert is_dataclass(datacls)
382
+ data = deepcopy(data)
383
+ for field in fields(datacls):
384
+ if field.name not in data:
385
+ continue
386
+ if is_dataclass(field.type):
387
+ data[field.name] = from_dict(field.type, data[field.name])
388
+ elif (
389
+ get_origin(field.type) is Union
390
+ and len(get_args(field.type)) == 2
391
+ and get_args(field.type)[1] is type(None)
392
+ and is_dataclass(get_args(field.type)[0])
393
+ ):
394
+ if data[field.name] is not None:
395
+ data[field.name] = from_dict(get_args(field.type)[0], data[field.name])
396
+ return datacls(**data)
397
+
398
+
399
+ def replace_factor_with_value(
400
+ config: RawConfig,
401
+ key: str,
402
+ reference_value: int,
403
+ bounds: Tuple[float, float],
404
+ ) -> None:
405
+ factor_key = key + '_factor'
406
+ if factor_key not in config:
407
+ assert key in config
408
+ else:
409
+ assert key not in config
410
+ factor = config.pop(factor_key)
411
+ assert bounds[0] <= factor <= bounds[1]
412
+ config[key] = int(factor * reference_value)
413
+
414
+
415
+ def get_temporary_copy(path: Union[str, Path]) -> Path:
416
+ path = env.get_path(path)
417
+ assert not path.is_dir() and not path.is_symlink()
418
+ tmp_path = path.with_name(
419
+ path.stem + '___' + str(uuid.uuid4()).replace('-', '') + path.suffix
420
+ )
421
+ shutil.copyfile(path, tmp_path)
422
+ atexit.register(lambda: tmp_path.unlink())
423
+ return tmp_path
424
+
425
+
426
+ def get_python():
427
+ python = Path('python3.9')
428
+ return str(python) if python.exists() else 'python'
429
+
430
+ def get_catboost_config(real_data_path, is_cv=False):
431
+ ds_name = Path(real_data_path).name
432
+ C = load_json(f'tuned_models/catboost/{ds_name}_cv.json')
433
+ return C
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/requirements.txt ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ catboost==1.0.3
2
+ category-encoders==2.3.0
3
+ dython==0.5.1
4
+ icecream==2.1.2
5
+ libzero==0.0.8
6
+ numpy==1.21.4
7
+ optuna==2.10.1
8
+ pandas==1.3.4
9
+ pyarrow==6.0.0
10
+ rtdl==0.0.9
11
+ scikit-learn==1.0.2
12
+ scipy==1.7.2
13
+ skorch==0.11.0
14
+ tomli-w==0.4.0
15
+ tomli==1.2.2
16
+ tqdm==4.62.3
17
+
18
+ # smote
19
+ imbalanced-learn==0.7.0
20
+
21
+ # tvae
22
+ rdt==0.6.4
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/run_tabddpm.sh ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ #!/usr/bin/env bash
2
+ set -e
3
+ cd /data/jialinzhang/synthetic_benchmark/tabddpm/code
4
+ export PYTHONPATH="$PWD:$PYTHONPATH"
5
+ python -m scripts.pipeline "$@"
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/run_tabddpm_docker.sh ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
 
1
+ #!/usr/bin/env bash
2
+ set -e
3
+ cd /workspace/tabddpm/code
4
+ export PYTHONPATH="$PWD:$PYTHONPATH"
5
+ python -m scripts.pipeline "$@"
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__init__.py ADDED
File without changes
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/__init__.cpython-311.pyc ADDED
Binary file (219 Bytes). View file
 
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/eval_catboost.cpython-311.pyc ADDED
Binary file (6.96 kB). View file
 
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/eval_mlp.cpython-311.pyc ADDED
Binary file (9.61 kB). View file
 
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/eval_simple.cpython-311.pyc ADDED
Binary file (6.12 kB). View file
 
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/sample.cpython-311.pyc ADDED
Binary file (8.3 kB). View file
 
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/train.cpython-311.pyc ADDED
Binary file (8.15 kB). View file
 
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/__pycache__/utils_train.cpython-311.pyc ADDED
Binary file (4.33 kB). View file
 
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/eval_catboost.py ADDED
@@ -0,0 +1,145 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from catboost import CatBoostClassifier, CatBoostRegressor
2
+ from sklearn.metrics import classification_report, r2_score
3
+ import numpy as np
4
+ import os
5
+ from sklearn.utils import shuffle
6
+ import zero
7
+ from pathlib import Path
8
+ import lib
9
+ from pprint import pprint
10
+ from lib import concat_features, read_pure_data, get_catboost_config, read_changed_val
11
+
12
+ def train_catboost(
13
+ parent_dir,
14
+ real_data_path,
15
+ eval_type,
16
+ T_dict,
17
+ seed = 0,
18
+ params = None,
19
+ change_val = True,
20
+ device = None # dummy
21
+ ):
22
+ zero.improve_reproducibility(seed)
23
+ if eval_type != "real":
24
+ synthetic_data_path = os.path.join(parent_dir)
25
+ info = lib.load_json(os.path.join(real_data_path, 'info.json'))
26
+ T = lib.Transformations(**T_dict)
27
+
28
+ if change_val:
29
+ X_num_real, X_cat_real, y_real, X_num_val, X_cat_val, y_val = read_changed_val(real_data_path, val_size=0.2)
30
+
31
+ X = None
32
+ print('-'*100)
33
+ if eval_type == 'merged':
34
+ print('loading merged data...')
35
+ if not change_val:
36
+ X_num_real, X_cat_real, y_real = read_pure_data(real_data_path)
37
+ X_num_fake, X_cat_fake, y_fake = read_pure_data(synthetic_data_path)
38
+
39
+ ###
40
+ # dists = privacy_metrics(real_data_path, synthetic_data_path)
41
+ # bad_fakes = dists.argsort()[:int(0.25 * len(y_fake))]
42
+ # X_num_fake = np.delete(X_num_fake, bad_fakes, axis=0)
43
+ # X_cat_fake = np.delete(X_cat_fake, bad_fakes, axis=0) if X_cat_fake is not None else None
44
+ # y_fake = np.delete(y_fake, bad_fakes, axis=0)
45
+ ###
46
+
47
+ y = np.concatenate([y_real, y_fake], axis=0)
48
+
49
+ X_num = None
50
+ if X_num_real is not None:
51
+ X_num = np.concatenate([X_num_real, X_num_fake], axis=0)
52
+
53
+ X_cat = None
54
+ if X_cat_real is not None:
55
+ X_cat = np.concatenate([X_cat_real, X_cat_fake], axis=0)
56
+
57
+ elif eval_type == 'synthetic':
58
+ print(f'loading synthetic data: {parent_dir}')
59
+ X_num, X_cat, y = read_pure_data(synthetic_data_path)
60
+
61
+ elif eval_type == 'real':
62
+ print('loading real data...')
63
+ if not change_val:
64
+ X_num, X_cat, y = read_pure_data(real_data_path)
65
+ else:
66
+ raise "Choose eval method"
67
+
68
+ if not change_val:
69
+ X_num_val, X_cat_val, y_val = read_pure_data(real_data_path, 'val')
70
+ X_num_test, X_cat_test, y_test = read_pure_data(real_data_path, 'test')
71
+
72
+ D = lib.Dataset(
73
+ {'train': X_num, 'val': X_num_val, 'test': X_num_test} if X_num is not None else None,
74
+ {'train': X_cat, 'val': X_cat_val, 'test': X_cat_test} if X_cat is not None else None,
75
+ {'train': y, 'val': y_val, 'test': y_test},
76
+ {},
77
+ lib.TaskType(info['task_type']),
78
+ info.get('n_classes')
79
+ )
80
+
81
+ D = lib.transform_dataset(D, T, None)
82
+ X = concat_features(D)
83
+ print(f'Train size: {X["train"].shape}, Val size {X["val"].shape}')
84
+
85
+ if params is None:
86
+ catboost_config = get_catboost_config(real_data_path, is_cv=True)
87
+ else:
88
+ catboost_config = params
89
+
90
+ if 'cat_features' not in catboost_config:
91
+ catboost_config['cat_features'] = list(range(D.n_num_features, D.n_features))
92
+
93
+ for col in range(D.n_features):
94
+ for split in X.keys():
95
+ if col in catboost_config['cat_features']:
96
+ X[split][col] = X[split][col].astype(str)
97
+ else:
98
+ X[split][col] = X[split][col].astype(float)
99
+ print(T_dict)
100
+ pprint(catboost_config, width=100)
101
+ print('-'*100)
102
+
103
+ if D.is_regression:
104
+ model = CatBoostRegressor(
105
+ **catboost_config,
106
+ eval_metric='RMSE',
107
+ random_seed=seed
108
+ )
109
+ predict = model.predict
110
+ else:
111
+ model = CatBoostClassifier(
112
+ loss_function="MultiClass" if D.is_multiclass else "Logloss",
113
+ **catboost_config,
114
+ eval_metric='TotalF1',
115
+ random_seed=seed,
116
+ class_names=[str(i) for i in range(D.n_classes)] if D.is_multiclass else ["0", "1"]
117
+ )
118
+ predict = (
119
+ model.predict_proba
120
+ if D.is_multiclass
121
+ else lambda x: model.predict_proba(x)[:, 1]
122
+ )
123
+
124
+ model.fit(
125
+ X['train'], D.y['train'],
126
+ eval_set=(X['val'], D.y['val']),
127
+ verbose=100
128
+ )
129
+ predictions = {k: predict(v) for k, v in X.items()}
130
+ print(predictions['train'].shape)
131
+
132
+ report = {}
133
+ report['eval_type'] = eval_type
134
+ report['dataset'] = real_data_path
135
+ report['metrics'] = D.calculate_metrics(predictions, None if D.is_regression else 'probs')
136
+
137
+ metrics_report = lib.MetricsReport(report['metrics'], D.task_type)
138
+ metrics_report.print_metrics()
139
+
140
+ if parent_dir is not None:
141
+ lib.dump_json(report, os.path.join(parent_dir, "results_catboost.json"))
142
+
143
+ return metrics_report
144
+
145
+
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/eval_mlp.py ADDED
@@ -0,0 +1,176 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from sklearn.metrics import classification_report, r2_score, f1_score
2
+ import numpy as np
3
+ import os
4
+ from sklearn.utils import shuffle
5
+ import zero
6
+ from pathlib import Path
7
+ import lib
8
+ from tab_ddpm.modules import MLP
9
+ from skorch.regressor import NeuralNetRegressor
10
+ from skorch.classifier import NeuralNetClassifier
11
+ from skorch.dataset import Dataset as SkDataset
12
+ from skorch.callbacks import EarlyStopping, EpochScoring
13
+ from skorch.helper import predefined_split
14
+ from torch.optim import AdamW
15
+ from torch.nn import MSELoss, BCEWithLogitsLoss, CrossEntropyLoss
16
+
17
+ def train_mlp(
18
+ parent_dir,
19
+ real_data_path,
20
+ eval_type,
21
+ T_dict,
22
+ params = None,
23
+ change_val = False,
24
+ seed = 0,
25
+ device = "cuda:0"
26
+ ):
27
+ zero.improve_reproducibility(seed)
28
+ synthetic_data_path = os.path.join(parent_dir) if parent_dir is not None else None
29
+ info = lib.load_json(os.path.join(real_data_path, 'info.json'))
30
+ T = lib.Transformations(**T_dict)
31
+
32
+ if change_val:
33
+ X_num_real, X_cat_real, y_real, X_num_val, X_cat_val, y_val = lib.read_changed_val(real_data_path, val_size=0.2)
34
+
35
+ X = None
36
+ print('-'*100)
37
+ if eval_type == 'merged':
38
+ print('loading merged data...')
39
+ if not change_val:
40
+ X_num_real, X_cat_real, y_real = lib.read_pure_data(real_data_path)
41
+ X_num_fake, X_cat_fake, y_fake = lib.read_pure_data(synthetic_data_path)
42
+ y = np.concatenate([y_real, y_fake], axis=0)
43
+
44
+ X_num = None
45
+ if X_num_real is not None:
46
+ X_num = np.concatenate([X_num_real, X_num_fake], axis=0)
47
+
48
+ X_cat = None
49
+ if X_cat_real is not None:
50
+ X_cat = np.concatenate([X_cat_real, X_cat_fake], axis=0)
51
+
52
+ elif eval_type == 'synthetic':
53
+ print('loading synthetic data...')
54
+ X_num, X_cat, y = lib.read_pure_data(synthetic_data_path)
55
+
56
+ elif eval_type == 'real':
57
+ print('loading real data...')
58
+ if not change_val:
59
+ X_num, X_cat, y = lib.read_pure_data(real_data_path)
60
+ else:
61
+ raise "Choose eval method"
62
+
63
+ if not change_val:
64
+ X_num_val, X_cat_val, y_val = lib.read_pure_data(real_data_path, 'val')
65
+ X_num_test, X_cat_test, y_test = lib.read_pure_data(real_data_path, 'test')
66
+
67
+ D = lib.Dataset(
68
+ {'train': X_num, 'val': X_num_val, 'test': X_num_test} if X_num is not None else None,
69
+ {'train': X_cat, 'val': X_cat_val, 'test': X_cat_test} if X_cat is not None else None,
70
+ {'train': y, 'val': y_val, 'test': y_test},
71
+ {},
72
+ lib.TaskType(info['task_type']),
73
+ info.get('n_classes')
74
+ )
75
+
76
+ D = lib.transform_dataset(D, T, None)
77
+ X = lib.concat_features(D)
78
+
79
+ X["train"], D.y["train"] = shuffle(X["train"], D.y["train"], random_state=seed)
80
+ print(f'Train size: {X["train"].shape}, Val size {X["val"].shape}')
81
+
82
+ if params is None:
83
+ params = lib.load_json(f"tuned_models/mlp/{Path(real_data_path).name}_cv.json")
84
+
85
+ mlp_params = {}
86
+ if params is not None:
87
+ mlp_params["d_layers"] = params["d_layers"]
88
+ mlp_params["dropout"] = params["dropout"]
89
+ # mlp_params["n_blocks"] = params["n_blocks"]
90
+ # mlp_params["d_main"] = params["d_main"]
91
+ # mlp_params["d_hidden"] = params["d_hidden"]
92
+ # mlp_params["dropout_first"] = params["dropout_first"]
93
+ # mlp_params["dropout_second"] = params["dropout_second"]
94
+ mlp_params["d_in"] = X["train"].shape[1]
95
+ mlp_params["d_out"] = D.nn_output_dim
96
+
97
+ model = MLP.make_baseline(**mlp_params)
98
+
99
+ if D.is_regression:
100
+ y = {k: D.y[k].reshape(-1, 1).astype(np.float32) for k in D.y}
101
+ elif D.is_binclass:
102
+ y = {k: D.y[k].reshape(-1, 1).astype(np.float32) for k in D.y}
103
+ else:
104
+ y = {k: D.y[k].astype(np.int64) for k in D.y}
105
+
106
+ train_ds = SkDataset(X = X["train"].to_numpy(), y = y["train"])
107
+ val_ds = SkDataset(X = X["val"].to_numpy(), y = y["val"])
108
+ es = EarlyStopping(monitor="valid_loss", patience=16)
109
+
110
+ print('-'*100)
111
+
112
+ def f1(net, X, y):
113
+ y_pred = net.predict(X)
114
+ return f1_score(y, y_pred, average="macro")
115
+
116
+ def r2(net, X, y):
117
+ y_pred = net.predict(X)
118
+ return r2_score(y, y_pred)
119
+
120
+ if D.is_regression:
121
+ net = NeuralNetRegressor(
122
+ model,
123
+ criterion=MSELoss,
124
+ optimizer=AdamW,
125
+ lr=params["lr"],
126
+ optimizer__weight_decay=params["weight_decay"],
127
+ batch_size=128 if len(D.y["train"]) < 10_000 else 256,
128
+ max_epochs=1000,
129
+ train_split=predefined_split(val_ds),
130
+ iterator_train__shuffle=True,
131
+ device=device,
132
+ callbacks=[es, EpochScoring(r2, lower_is_better=False)],
133
+ )
134
+
135
+ else:
136
+ net = NeuralNetClassifier(
137
+ model,
138
+ criterion=BCEWithLogitsLoss if D.is_binclass else CrossEntropyLoss,
139
+ optimizer=AdamW,
140
+ lr=params["lr"],
141
+ optimizer__weight_decay=params["weight_decay"],
142
+ batch_size=128 if len(D.y["train"]) < 10_000 else 256,
143
+ max_epochs=1000,
144
+ train_split=predefined_split(val_ds),
145
+ iterator_train__shuffle=True,
146
+ device=device,
147
+ callbacks=[es, EpochScoring(f1, lower_is_better=False)],
148
+ )
149
+
150
+ net.fit(
151
+ X=train_ds.X,
152
+ y=train_ds.y
153
+ )
154
+
155
+ print("LAST:", len(net.history))
156
+
157
+ predictions = {k: net.predict_proba(v.to_numpy())[:, 1] if D.is_binclass else
158
+ net.predict_proba(v.to_numpy()) if D.is_multiclass else
159
+ net.predict(v.to_numpy())
160
+ for k, v in X.items()
161
+ }
162
+
163
+ report = {}
164
+ report['eval_type'] = eval_type
165
+ report['dataset'] = real_data_path
166
+ report['metrics'] = D.calculate_metrics(predictions, None if D.is_regression else 'probs')
167
+
168
+ metrics_report = lib.MetricsReport(report['metrics'], D.task_type)
169
+ metrics_report.print_metrics()
170
+
171
+ if parent_dir is not None:
172
+ lib.dump_json(report, os.path.join(parent_dir, "results_mlp.json"))
173
+
174
+ return metrics_report
175
+
176
+
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/eval_seeds.py ADDED
@@ -0,0 +1,121 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import argparse
2
+ import subprocess
3
+ import tempfile
4
+ import lib
5
+ import os
6
+ import shutil
7
+ from pathlib import Path
8
+ from copy import deepcopy
9
+ from scripts.eval_catboost import train_catboost
10
+ from scripts.eval_mlp import train_mlp
11
+ from scripts.eval_simple import train_simple
12
+
13
+ pipeline = {
14
+ 'ddpm': 'scripts/pipeline.py',
15
+ 'smote': 'smote/pipeline_smote.py',
16
+ 'ctabgan': 'CTAB-GAN/pipeline_ctabgan.py',
17
+ 'ctabgan-plus': 'CTAB-GAN-Plus/pipeline_ctabgan.py',
18
+ 'tvae': 'CTGAN/pipeline_tvae.py'
19
+ }
20
+
21
+ def eval_seeds(
22
+ raw_config,
23
+ n_seeds,
24
+ eval_type,
25
+ sampling_method="ddpm",
26
+ model_type="catboost",
27
+ n_datasets=1,
28
+ dump=True,
29
+ change_val=False
30
+ ):
31
+
32
+ metrics_seeds_report = lib.SeedsMetricsReport()
33
+ parent_dir = Path(raw_config["parent_dir"])
34
+
35
+ if eval_type == 'real':
36
+ n_datasets = 1
37
+
38
+ temp_config = deepcopy(raw_config)
39
+ with tempfile.TemporaryDirectory() as dir_:
40
+ dir_ = Path(dir_)
41
+ temp_config["parent_dir"] = str(dir_)
42
+ if sampling_method == "ddpm":
43
+ shutil.copy2(parent_dir / "model.pt", temp_config["parent_dir"])
44
+ elif sampling_method in ["ctabgan", "ctabgan-plus"]:
45
+ shutil.copy2(parent_dir / "ctabgan.obj", temp_config["parent_dir"])
46
+ elif sampling_method == "tvae":
47
+ shutil.copy2(parent_dir / "tvae.obj", temp_config["parent_dir"])
48
+
49
+ for sample_seed in range(n_datasets):
50
+ temp_config['sample']['seed'] = sample_seed
51
+ lib.dump_config(temp_config, dir_ / "config.toml")
52
+ if eval_type != 'real' and n_datasets > 1:
53
+ subprocess.run(['python3.9', f'{pipeline[sampling_method]}', '--config', f'{str(dir_ / "config.toml")}', '--sample'], check=True)
54
+
55
+ T_dict = deepcopy(raw_config['eval']['T'])
56
+ for seed in range(n_seeds):
57
+ print(f'**Eval Iter: {sample_seed*n_seeds + (seed + 1)}/{n_seeds * n_datasets}**')
58
+ if model_type == "catboost":
59
+ T_dict["normalization"] = None
60
+ T_dict["cat_encoding"] = None
61
+ metric_report = train_catboost(
62
+ parent_dir=temp_config['parent_dir'],
63
+ real_data_path=temp_config['real_data_path'],
64
+ eval_type=eval_type,
65
+ T_dict=T_dict,
66
+ seed=seed,
67
+ change_val=change_val
68
+ )
69
+ elif model_type == "mlp":
70
+ T_dict["normalization"] = "quantile"
71
+ T_dict["cat_encoding"] = "one-hot"
72
+ metric_report = train_mlp(
73
+ parent_dir=temp_config['parent_dir'],
74
+ real_data_path=temp_config['real_data_path'],
75
+ eval_type=eval_type,
76
+ T_dict=T_dict,
77
+ seed=seed,
78
+ change_val=change_val
79
+ )
80
+
81
+ metrics_seeds_report.add_report(metric_report)
82
+
83
+ metrics_seeds_report.get_mean_std()
84
+ res = metrics_seeds_report.print_result()
85
+ if os.path.exists(parent_dir/ f"eval_{model_type}.json"):
86
+ eval_dict = lib.load_json(parent_dir / f"eval_{model_type}.json")
87
+ eval_dict = eval_dict | {eval_type: res}
88
+ else:
89
+ eval_dict = {eval_type: res}
90
+
91
+ if dump:
92
+ lib.dump_json(eval_dict, parent_dir / f"eval_{model_type}.json")
93
+
94
+ raw_config['sample']['seed'] = 0
95
+ lib.dump_config(raw_config, parent_dir / 'config.toml')
96
+ return res
97
+
98
+ def main():
99
+ parser = argparse.ArgumentParser()
100
+ parser.add_argument('--config', metavar='FILE')
101
+ parser.add_argument('n_seeds', type=int, default=10)
102
+ parser.add_argument('sampling_method', type=str, default="ddpm")
103
+ parser.add_argument('eval_type', type=str, default='synthetic')
104
+ parser.add_argument('model_type', type=str, default='catboost')
105
+ parser.add_argument('n_datasets', type=int, default=1)
106
+ parser.add_argument('--no_dump', action='store_false', default=True)
107
+
108
+ args = parser.parse_args()
109
+ raw_config = lib.load_config(args.config)
110
+ eval_seeds(
111
+ raw_config,
112
+ n_seeds=args.n_seeds,
113
+ sampling_method=args.sampling_method,
114
+ eval_type=args.eval_type,
115
+ model_type=args.model_type,
116
+ n_datasets=args.n_datasets,
117
+ dump=args.no_dump
118
+ )
119
+
120
+ if __name__ == '__main__':
121
+ main()
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/scripts/eval_seeds_simple.py ADDED
@@ -0,0 +1,130 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import argparse
2
+ import subprocess
3
+ import tempfile
4
+ import lib
5
+ import os
6
+ import pandas as pd
7
+ import numpy as np
8
+ from pathlib import Path
9
+ from eval_simple import train_simple
10
+ from copy import deepcopy
11
+ import shutil
12
+
13
+ pipeline = {
14
+ 'ddpm': 'scripts/pipeline.py',
15
+ 'smote': 'smote/pipeline_smote.py',
16
+ 'ctabgan': 'CTAB-GAN/pipeline_ctabgan.py',
17
+ 'ctabgan-plus': 'CTAB-GAN-Plus/pipeline_ctabganp.py',
18
+ 'tvae': 'CTGAN/pipeline_tvae.py'
19
+ }
20
+
21
+
22
+ def eval_seeds(
23
+ raw_config,
24
+ n_seeds,
25
+ eval_type,
26
+ sampling_method="ddpm",
27
+ model_type="simple",
28
+ n_datasets=1,
29
+ dump=True,
30
+ change_val=False
31
+ ):
32
+ parent_dir = Path(raw_config["parent_dir"])
33
+ models = ["tree", "lr", "rf", "mlp"]
34
+ metrics_seeds_report = {
35
+ k: lib.SeedsMetricsReport() for k in models
36
+ }
37
+
38
+ if eval_type == 'real':
39
+ n_datasets = 1
40
+
41
+ T_dict = deepcopy(raw_config['eval']['T'])
42
+ T_dict["normalization"] = "minmax"
43
+ T_dict["cat_encoding"] = None
44
+
45
+ temp_config = deepcopy(raw_config)
46
+ with tempfile.TemporaryDirectory() as dir_:
47
+ dir_ = Path(dir_)
48
+ temp_config["parent_dir"] = str(dir_)
49
+ if sampling_method == "ddpm":
50
+ shutil.copy2(parent_dir / "model.pt", temp_config["parent_dir"])
51
+ elif sampling_method in ["ctabgan", "ctabgan-plus"]:
52
+ shutil.copy2(parent_dir / "ctabgan.obj", temp_config["parent_dir"])
53
+ elif sampling_method == "tvae":
54
+ shutil.copy2(parent_dir / "tvae.obj", temp_config["parent_dir"])
55
+
56
+ for sample_seed in range(n_datasets):
57
+ temp_config['sample']['seed'] = sample_seed
58
+ lib.dump_config(temp_config, dir_ / "config.toml")
59
+ if eval_type != 'real':
60
+ subprocess.run(['python3.9', f'{pipeline[sampling_method]}', '--config', f'{str(dir_ / "config.toml")}', '--sample'], check=True)
61
+
62
+ for seed in range(n_seeds):
63
+ print(f'**Eval Iter: {sample_seed*n_seeds + (seed + 1)}/{n_seeds * n_datasets}**')
64
+ for model in models:
65
+ metric_report = train_simple(
66
+ parent_dir=temp_config['parent_dir'],
67
+ real_data_path=temp_config['real_data_path'],
68
+ model_name=model,
69
+ eval_type=eval_type,
70
+ T_dict=T_dict,
71
+ seed=seed,
72
+ change_val=change_val
73
+ )
74
+
75
+ metrics_seeds_report[model].add_report(metric_report)
76
+ for k in models:
77
+ metrics_seeds_report[k].get_mean_std()
78
+ res = {
79
+ k: metrics_seeds_report[k].print_result() for k in models
80
+ }
81
+
82
+ m1, m2 = ("r2-mean", "rmse-mean") if "r2-mean" in res["tree"]["val"] else ("f1-mean", "acc-mean")
83
+ res["avg"] = {
84
+ "val": {
85
+ m1: np.around(np.mean([res[k]["val"][m1] for k in models]), 4),
86
+ m2: np.around(np.mean([res[k]["val"][m2] for k in models]), 4)
87
+ },
88
+ "test": {
89
+ m1: np.around(np.mean([res[k]["test"][m1] for k in models]), 4),
90
+ m2: np.around(np.mean([res[k]["test"][m2] for k in models]), 4)
91
+ },
92
+ }
93
+
94
+ if os.path.exists(parent_dir / f"eval_{model_type}.json"):
95
+ eval_dict = lib.load_json(parent_dir / f"eval_{model_type}.json")
96
+ eval_dict = eval_dict | {eval_type: res}
97
+ else:
98
+ eval_dict = {eval_type: res}
99
+
100
+ if dump:
101
+ lib.dump_json(eval_dict, parent_dir / f"eval_{model_type}.json")
102
+
103
+ raw_config['sample']['seed'] = 0
104
+ lib.dump_config(raw_config, parent_dir / 'config.toml')
105
+ return res
106
+
107
+ def main():
108
+ parser = argparse.ArgumentParser()
109
+ parser.add_argument('--config', metavar='FILE')
110
+ parser.add_argument('n_seeds', type=int, default=10)
111
+ parser.add_argument('sampling_method', type=str, default="ddpm")
112
+ parser.add_argument('eval_type', type=str, default='synthetic')
113
+ parser.add_argument('model_type', type=str, default='catboost')
114
+ parser.add_argument('n_datasets', type=int, default=1)
115
+ parser.add_argument('--no_dump', action='store_false', default=True)
116
+
117
+ args = parser.parse_args()
118
+ raw_config = lib.load_config(args.config)
119
+ eval_seeds(
120
+ raw_config,
121
+ n_seeds=args.n_seeds,
122
+ sampling_method=args.sampling_method,
123
+ eval_type=args.eval_type,
124
+ model_type=args.model_type,
125
+ n_datasets=args.n_datasets,
126
+ dump=args.no_dump
127
+ )
128
+
129
+ if __name__ == '__main__':
130
+ main()