Resume SynthData0523 main/c6 batch 4
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- .gitattributes +34 -0
- SynthData0523/main/c6/realtabformer/rtf-c6-20260329_231509/staged/public/test.csv +3 -0
- SynthData0523/main/c6/realtabformer/rtf-c6-20260329_231509/staged/public/train.csv +3 -0
- SynthData0523/main/c6/realtabformer/rtf-c6-20260329_231509/staged/public/val.csv +3 -0
- SynthData0523/main/c6/realtabformer/rtf-c6-20260329_231509/staged/realtabformer/adapter_report.json +7 -0
- SynthData0523/main/c6/realtabformer/rtf-c6-20260329_231509/staged/realtabformer/adapter_transforms_applied.json +1 -0
- SynthData0523/main/c6/realtabformer/rtf-c6-20260329_231509/staged/realtabformer/model_input_manifest.json +176 -0
- SynthData0523/main/c6/realtabformer/rtf-c6-20260329_231509/train_20260329_231510.log +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/_tabbyflow_gen.py +33 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/_tabbyflow_train.py +22 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/input_snapshot.json +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/models_tabbyflow/trained.pt +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/public_gate/normalized_schema_snapshot.json +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/public_gate/public_gate_report.json +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/public_gate/staged_input_manifest.json +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/runtime_result.json +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/public/staged_features.json +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/public/test.csv +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/public/train.csv +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/public/val.csv +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/tabbyflow/adapter_report.json +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/tabbyflow/adapter_transforms_applied.json +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/tabbyflow/model_input_manifest.json +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabbyflow-c6-7636-20260420_063635.csv +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabbyflow_train_meta.json +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/X_cat_test.npy +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/X_cat_train.npy +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/X_cat_val.npy +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/X_num_test.npy +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/X_num_train.npy +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/X_num_val.npy +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/info.json +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/real.csv +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/test.csv +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/val.csv +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/y_test.npy +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/y_train.npy +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/y_val.npy +3 -0
- SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/train_20260420_063042.log +3 -0
- SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/._data +0 -0
- SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/.gitignore +22 -0
- SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/.gitmodules +9 -0
- SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CONFIG_DESCRIPTION.md +78 -0
- SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/.gitignore +1 -0
- SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/README.md +49 -0
- SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/columns.json +3 -0
- SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/model copy/ctabgan.py +70 -0
- SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/model copy/eval/evaluation.py +193 -0
- SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/model copy/pipeline/data_preparation.py +130 -0
- SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/model copy/privacy_utils/rdp_accountant.py +280 -0
.gitattributes
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"dataset_id": "c6",
|
| 3 |
+
"model": "realtabformer",
|
| 4 |
+
"target_column": "Type of Answer",
|
| 5 |
+
"task_type": "classification",
|
| 6 |
+
"column_schema": [
|
| 7 |
+
{
|
| 8 |
+
"name": "Student ID",
|
| 9 |
+
"role": "feature",
|
| 10 |
+
"semantic_type": "numeric",
|
| 11 |
+
"nullable": false,
|
| 12 |
+
"missing_tokens": [],
|
| 13 |
+
"parse_format": null,
|
| 14 |
+
"impute_strategy": "median",
|
| 15 |
+
"profile_stats": {
|
| 16 |
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"missing_rate": 0.0,
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| 17 |
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"unique_count": 367,
|
| 18 |
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"unique_ratio": 0.048062,
|
| 19 |
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"example_values": [
|
| 20 |
+
"473",
|
| 21 |
+
"351",
|
| 22 |
+
"967",
|
| 23 |
+
"1557",
|
| 24 |
+
"394"
|
| 25 |
+
]
|
| 26 |
+
}
|
| 27 |
+
},
|
| 28 |
+
{
|
| 29 |
+
"name": "Student Country",
|
| 30 |
+
"role": "feature",
|
| 31 |
+
"semantic_type": "categorical",
|
| 32 |
+
"nullable": false,
|
| 33 |
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"missing_tokens": [],
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| 34 |
+
"parse_format": null,
|
| 35 |
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"impute_strategy": "mode",
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| 36 |
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"profile_stats": {
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| 38 |
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"unique_count": 8,
|
| 39 |
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"unique_ratio": 0.001048,
|
| 40 |
+
"example_values": [
|
| 41 |
+
"Portugal",
|
| 42 |
+
"Italy",
|
| 43 |
+
"Lithuania",
|
| 44 |
+
"Slovenia",
|
| 45 |
+
"Ireland"
|
| 46 |
+
]
|
| 47 |
+
}
|
| 48 |
+
},
|
| 49 |
+
{
|
| 50 |
+
"name": "Question ID",
|
| 51 |
+
"role": "feature",
|
| 52 |
+
"semantic_type": "numeric",
|
| 53 |
+
"nullable": false,
|
| 54 |
+
"missing_tokens": [],
|
| 55 |
+
"parse_format": null,
|
| 56 |
+
"impute_strategy": "median",
|
| 57 |
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"profile_stats": {
|
| 58 |
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"missing_rate": 0.0,
|
| 59 |
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"unique_count": 796,
|
| 60 |
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"unique_ratio": 0.104243,
|
| 61 |
+
"example_values": [
|
| 62 |
+
"346",
|
| 63 |
+
"796",
|
| 64 |
+
"453",
|
| 65 |
+
"87",
|
| 66 |
+
"325"
|
| 67 |
+
]
|
| 68 |
+
}
|
| 69 |
+
},
|
| 70 |
+
{
|
| 71 |
+
"name": "Type of Answer",
|
| 72 |
+
"role": "target",
|
| 73 |
+
"semantic_type": "boolean",
|
| 74 |
+
"nullable": false,
|
| 75 |
+
"missing_tokens": [],
|
| 76 |
+
"parse_format": null,
|
| 77 |
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"impute_strategy": "mode",
|
| 78 |
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"profile_stats": {
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| 79 |
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"missing_rate": 0.0,
|
| 80 |
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"unique_count": 2,
|
| 81 |
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"unique_ratio": 0.000262,
|
| 82 |
+
"example_values": [
|
| 83 |
+
"0",
|
| 84 |
+
"1"
|
| 85 |
+
]
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
{
|
| 89 |
+
"name": "Question Level",
|
| 90 |
+
"role": "feature",
|
| 91 |
+
"semantic_type": "categorical",
|
| 92 |
+
"nullable": false,
|
| 93 |
+
"missing_tokens": [],
|
| 94 |
+
"parse_format": null,
|
| 95 |
+
"impute_strategy": "mode",
|
| 96 |
+
"profile_stats": {
|
| 97 |
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"missing_rate": 0.0,
|
| 98 |
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"unique_count": 2,
|
| 99 |
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"unique_ratio": 0.000262,
|
| 100 |
+
"example_values": [
|
| 101 |
+
"Advanced",
|
| 102 |
+
"Basic"
|
| 103 |
+
]
|
| 104 |
+
}
|
| 105 |
+
},
|
| 106 |
+
{
|
| 107 |
+
"name": "Topic",
|
| 108 |
+
"role": "feature",
|
| 109 |
+
"semantic_type": "text",
|
| 110 |
+
"nullable": false,
|
| 111 |
+
"missing_tokens": [],
|
| 112 |
+
"parse_format": null,
|
| 113 |
+
"impute_strategy": "keep_raw",
|
| 114 |
+
"profile_stats": {
|
| 115 |
+
"missing_rate": 0.0,
|
| 116 |
+
"unique_count": 14,
|
| 117 |
+
"unique_ratio": 0.001833,
|
| 118 |
+
"example_values": [
|
| 119 |
+
"Complex Numbers",
|
| 120 |
+
"Fundamental Mathematics",
|
| 121 |
+
"Linear Algebra",
|
| 122 |
+
"Real Functions of a single variable",
|
| 123 |
+
"Analytic Geometry"
|
| 124 |
+
]
|
| 125 |
+
}
|
| 126 |
+
},
|
| 127 |
+
{
|
| 128 |
+
"name": "Subtopic",
|
| 129 |
+
"role": "feature",
|
| 130 |
+
"semantic_type": "text",
|
| 131 |
+
"nullable": false,
|
| 132 |
+
"missing_tokens": [],
|
| 133 |
+
"parse_format": null,
|
| 134 |
+
"impute_strategy": "keep_raw",
|
| 135 |
+
"profile_stats": {
|
| 136 |
+
"missing_rate": 0.0,
|
| 137 |
+
"unique_count": 24,
|
| 138 |
+
"unique_ratio": 0.003143,
|
| 139 |
+
"example_values": [
|
| 140 |
+
"Complex Numbers",
|
| 141 |
+
"Algebraic expressions, Equations, and Inequalities",
|
| 142 |
+
"Vector Spaces",
|
| 143 |
+
"Limits and Continuity",
|
| 144 |
+
"Linear Transformations"
|
| 145 |
+
]
|
| 146 |
+
}
|
| 147 |
+
},
|
| 148 |
+
{
|
| 149 |
+
"name": "Keywords",
|
| 150 |
+
"role": "feature",
|
| 151 |
+
"semantic_type": "text",
|
| 152 |
+
"nullable": false,
|
| 153 |
+
"missing_tokens": [],
|
| 154 |
+
"parse_format": null,
|
| 155 |
+
"impute_strategy": "keep_raw",
|
| 156 |
+
"profile_stats": {
|
| 157 |
+
"missing_rate": 0.0,
|
| 158 |
+
"unique_count": 360,
|
| 159 |
+
"unique_ratio": 0.047145,
|
| 160 |
+
"example_values": [
|
| 161 |
+
"Imaginary part,Modulus of a complex number,Operations with complex numbers,Conjugate number,Real part",
|
| 162 |
+
"Logarithmic function,Exponential function,Simplify expressions",
|
| 163 |
+
"Linear independence,Span,Linear dependence",
|
| 164 |
+
"Indeterminate forms,Limits",
|
| 165 |
+
"Range,Kernel"
|
| 166 |
+
]
|
| 167 |
+
}
|
| 168 |
+
}
|
| 169 |
+
],
|
| 170 |
+
"public_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c6/realtabformer/rtf-c6-20260329_231509/public_gate/staged_input_manifest.json",
|
| 171 |
+
"train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c6/realtabformer/rtf-c6-20260329_231509/staged/public/train.csv",
|
| 172 |
+
"val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c6/realtabformer/rtf-c6-20260329_231509/staged/public/val.csv",
|
| 173 |
+
"test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c6/realtabformer/rtf-c6-20260329_231509/staged/public/test.csv",
|
| 174 |
+
"features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c6/realtabformer/rtf-c6-20260329_231509/staged/public/staged_features.json",
|
| 175 |
+
"public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c6/realtabformer/rtf-c6-20260329_231509/public_gate/public_gate_report.json"
|
| 176 |
+
}
|
SynthData0523/main/c6/realtabformer/rtf-c6-20260329_231509/train_20260329_231510.log
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:c593588546caea885c8bc0ad25f9b58eece87a5d47e6b0e2e9106d460b86ee73
|
| 3 |
+
size 1707182
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/_tabbyflow_gen.py
ADDED
|
@@ -0,0 +1,33 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
import os, shutil, subprocess, sys
|
| 3 |
+
root = r"/workspace/ef-vfm"
|
| 4 |
+
name = r"pipeline_ds"
|
| 5 |
+
src = r"/work/output-SpecializedModels/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds"
|
| 6 |
+
dst_data = os.path.join(root, "data", name)
|
| 7 |
+
shutil.rmtree(dst_data, ignore_errors=True)
|
| 8 |
+
shutil.copytree(src, dst_data)
|
| 9 |
+
dst_syn = os.path.join(root, "synthetic", name)
|
| 10 |
+
os.makedirs(dst_syn, exist_ok=True)
|
| 11 |
+
for fn in ("real.csv", "test.csv", "val.csv"):
|
| 12 |
+
shutil.copy(os.path.join(src, fn), os.path.join(dst_syn, fn))
|
| 13 |
+
os.chdir(root)
|
| 14 |
+
os.environ["PYTHONPATH"] = root + os.pathsep + os.environ.get("PYTHONPATH", "")
|
| 15 |
+
subprocess.check_call([
|
| 16 |
+
sys.executable, "main.py",
|
| 17 |
+
"--dataname", name, "--mode", "test", "--gpu", "0",
|
| 18 |
+
"--no_wandb", "--exp_name", r"adapter_efvfm",
|
| 19 |
+
"--ckpt_path", r"/workspace/ef-vfm/ef_vfm/ckpt/pipeline_ds/adapter_efvfm/model_500.pt",
|
| 20 |
+
"--num_samples_to_generate", str(int(7636)),
|
| 21 |
+
])
|
| 22 |
+
base = os.path.join(root, "ef_vfm", "result", name, r"adapter_efvfm")
|
| 23 |
+
best = None
|
| 24 |
+
best_t = -1.0
|
| 25 |
+
for r, _, files in os.walk(base):
|
| 26 |
+
if "samples.csv" in files:
|
| 27 |
+
p = os.path.join(r, "samples.csv")
|
| 28 |
+
t = os.path.getmtime(p)
|
| 29 |
+
if t > best_t:
|
| 30 |
+
best_t, best = t, p
|
| 31 |
+
if not best:
|
| 32 |
+
raise SystemExit("tabbyflow: no samples.csv in " + base)
|
| 33 |
+
shutil.copy(best, r"/work/output-SpecializedModels/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabbyflow-c6-7636-20260420_063635.csv")
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/_tabbyflow_train.py
ADDED
|
@@ -0,0 +1,22 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
|
| 2 |
+
import os, shutil, subprocess, sys
|
| 3 |
+
root = r"/workspace/ef-vfm"
|
| 4 |
+
name = r"pipeline_ds"
|
| 5 |
+
src = r"/work/output-SpecializedModels/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds"
|
| 6 |
+
os.makedirs(os.path.join(root, "data", name), exist_ok=True)
|
| 7 |
+
dst_data = os.path.join(root, "data", name)
|
| 8 |
+
dst_syn = os.path.join(root, "synthetic", name)
|
| 9 |
+
shutil.rmtree(dst_data, ignore_errors=True)
|
| 10 |
+
shutil.copytree(src, dst_data)
|
| 11 |
+
os.makedirs(dst_syn, exist_ok=True)
|
| 12 |
+
for fn in ("real.csv", "test.csv", "val.csv"):
|
| 13 |
+
shutil.copy(os.path.join(src, fn), os.path.join(dst_syn, fn))
|
| 14 |
+
os.chdir(root)
|
| 15 |
+
os.environ["PYTHONPATH"] = root + os.pathsep + os.environ.get("PYTHONPATH", "")
|
| 16 |
+
os.environ["EFVFM_SMOKE_STEPS"] = "500"
|
| 17 |
+
os.environ["EFVFM_ADAPTER_TRAIN"] = "1"
|
| 18 |
+
subprocess.check_call([
|
| 19 |
+
sys.executable, "main.py",
|
| 20 |
+
"--dataname", name, "--mode", "train", "--gpu", "0",
|
| 21 |
+
"--no_wandb", "--exp_name", r"adapter_efvfm",
|
| 22 |
+
])
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/input_snapshot.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:65e30301e80c06c9014ce49f064e87375a299ebf1c313175a5a08f32ab642619
|
| 3 |
+
size 1350
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/models_tabbyflow/trained.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:adb734fec12f2251befd371dca69e481b19464aded2a6823105a01b4be6ddbe5
|
| 3 |
+
size 40
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/public_gate/normalized_schema_snapshot.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:065bdbcaaeac76f0cbdb0c5fff8891508d44a53a8e05c41f90aa9bc5e7681d87
|
| 3 |
+
size 4158
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/public_gate/public_gate_report.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:caf5579c25c03b817ba8a8de781db7dc512fb35a1488a6e41f51f07997ce649b
|
| 3 |
+
size 921
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/public_gate/staged_input_manifest.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:220265cd461e79999e9e649a074b15d85f3dd699ad15a9e2e962233fc54ac96a
|
| 3 |
+
size 4959
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/runtime_result.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6724a1608a3f34120ee87e748ef97a39facca92eb7311fc0ae63e79e96901374
|
| 3 |
+
size 621
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/public/staged_features.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:bfdf5dc24983833c54d8dd0e6c39aaea73c21fb9552c8b7d60db4a3b4e2dc022
|
| 3 |
+
size 783
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/public/test.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d28b60b361526450f0c203ddf50498854cb66ad5c1978516a99c265f529f8e4f
|
| 3 |
+
size 107696
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/public/train.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7d8f85a52de0e63e292778c26cb06223383b366c589d4226c3de68b111ba5272
|
| 3 |
+
size 849500
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/public/val.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
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SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/staged/tabbyflow/adapter_report.json
ADDED
|
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ADDED
|
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| 1 |
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ADDED
|
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ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabbyflow_train_meta.json
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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ADDED
|
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| 1 |
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version https://git-lfs.github.com/spec/v1
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ADDED
|
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| 1 |
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version https://git-lfs.github.com/spec/v1
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|
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ADDED
|
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ADDED
|
@@ -0,0 +1,3 @@
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|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/X_num_train.npy
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/X_num_val.npy
ADDED
|
@@ -0,0 +1,3 @@
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|
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| 1 |
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version https://git-lfs.github.com/spec/v1
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|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/info.json
ADDED
|
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|
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|
|
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|
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| 1 |
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version https://git-lfs.github.com/spec/v1
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SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/real.csv
ADDED
|
@@ -0,0 +1,3 @@
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SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/test.csv
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
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version https://git-lfs.github.com/spec/v1
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|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/val.csv
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
|
|
|
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| 1 |
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version https://git-lfs.github.com/spec/v1
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size 21941
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/y_test.npy
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
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|
|
|
|
| 1 |
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version https://git-lfs.github.com/spec/v1
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size 7776
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/y_train.npy
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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version https://git-lfs.github.com/spec/v1
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oid sha256:80ccc3344a1009b642b589707df9c94cbc3dfa53970e361d51fe44862d17d9f2
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| 3 |
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size 61216
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/tabular_bundle/pipeline_ds/y_val.npy
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:eb96c431016954da476d05276bc9daef4e208abfe3045dcaff0b65626c0ef3b1
|
| 3 |
+
size 7760
|
SynthData0523/main/c6/tabbyflow/tabbyflow-c6-20260420_063042/train_20260420_063042.log
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:ab434ed514852222d056742e0eda13b60c72167505932bcbd34f9895ff9f9b4e
|
| 3 |
+
size 360815
|
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/._data
ADDED
|
Binary file (220 Bytes). View file
|
|
|
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/.gitignore
ADDED
|
@@ -0,0 +1,22 @@
|
|
|
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|
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|
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|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
.DS_Store
|
| 2 |
+
__pycache__/
|
| 3 |
+
catboost_info/
|
| 4 |
+
**/**.pt
|
| 5 |
+
**/**.ipynb
|
| 6 |
+
!agg_results.ipynb
|
| 7 |
+
**/**.npy
|
| 8 |
+
**/**.gz
|
| 9 |
+
**/**.sh
|
| 10 |
+
**/**.obj
|
| 11 |
+
**/**.png
|
| 12 |
+
**/**.tar
|
| 13 |
+
**/**.code-workspace
|
| 14 |
+
**/**.csv
|
| 15 |
+
exp/**/**/results_catboost.json
|
| 16 |
+
exp/**/**/results_mlp.json
|
| 17 |
+
|
| 18 |
+
configs/
|
| 19 |
+
data/
|
| 20 |
+
junk/
|
| 21 |
+
RF/
|
| 22 |
+
exps/
|
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/.gitmodules
ADDED
|
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
[submodule "ctgan"]
|
| 2 |
+
# path = CTGAN/CTGAN
|
| 3 |
+
url = https://github.com/sdv-dev/CTGAN
|
| 4 |
+
[submodule "ctabgan"]
|
| 5 |
+
# path = CTAB-GAN
|
| 6 |
+
url = https://github.com/Team-TUD/CTAB-GAN
|
| 7 |
+
[submodule "ctabgan+"]
|
| 8 |
+
# path = CTAB-GAN-Plus
|
| 9 |
+
url = https://github.com/Team-TUD/CTAB-GAN-Plus
|
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CONFIG_DESCRIPTION.md
ADDED
|
@@ -0,0 +1,78 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
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|
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|
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|
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|
|
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|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# Description of .toml config for TabDDPM
|
| 2 |
+
First of all, `train.T` and `eval.T` denote preprocessing for training and for evaluation, respectively.
|
| 3 |
+
|
| 4 |
+
Here we list non-obvious parameters.
|
| 5 |
+
|
| 6 |
+
Main part:
|
| 7 |
+
- `seed = 0` -- evaluation seed (and training, but for training it is fixed to 0)
|
| 8 |
+
- `parent_dir = "exp/abalone/check"` -- exp folder
|
| 9 |
+
- `real_data_path = "data/abalone/"`
|
| 10 |
+
- `model_type = "mlp"` -- model type that approximates the reverse process
|
| 11 |
+
- `num_numerical_features ` -- a number of numerical features in dataset
|
| 12 |
+
- `device = "cuda:0"`
|
| 13 |
+
|
| 14 |
+
Model params:
|
| 15 |
+
- `is_y_cond` -- false for regression, true for classification
|
| 16 |
+
- `d_in` -- input dimension (not necessary, since scripts calculate it automatically)
|
| 17 |
+
- `num_calsses` -- zero for regression, a number of classes for classification
|
| 18 |
+
- `rtdl_params` -- MLP parameters
|
| 19 |
+
|
| 20 |
+
```toml
|
| 21 |
+
seed = 0
|
| 22 |
+
parent_dir = "exp/abalone/check"
|
| 23 |
+
real_data_path = "data/abalone/"
|
| 24 |
+
model_type = "mlp"
|
| 25 |
+
num_numerical_features = 7
|
| 26 |
+
device = "cuda:0"
|
| 27 |
+
|
| 28 |
+
[model_params]
|
| 29 |
+
is_y_cond = false
|
| 30 |
+
d_in = 11
|
| 31 |
+
num_classes = 0
|
| 32 |
+
|
| 33 |
+
[model_params.rtdl_params]
|
| 34 |
+
d_layers = [
|
| 35 |
+
256,
|
| 36 |
+
256,
|
| 37 |
+
]
|
| 38 |
+
dropout = 0.0
|
| 39 |
+
|
| 40 |
+
[diffusion_params]
|
| 41 |
+
num_timesteps = 1000
|
| 42 |
+
gaussian_loss_type = "mse"
|
| 43 |
+
scheduler = "cosine"
|
| 44 |
+
|
| 45 |
+
[train.main]
|
| 46 |
+
steps = 1000
|
| 47 |
+
lr = 0.001
|
| 48 |
+
weight_decay = 1e-05
|
| 49 |
+
batch_size = 4096
|
| 50 |
+
|
| 51 |
+
[train.T]
|
| 52 |
+
seed = 0
|
| 53 |
+
normalization = "quantile"
|
| 54 |
+
num_nan_policy = "__none__"
|
| 55 |
+
cat_nan_policy = "__none__"
|
| 56 |
+
cat_min_frequency = "__none__"
|
| 57 |
+
cat_encoding = "__none__"
|
| 58 |
+
y_policy = "default"
|
| 59 |
+
|
| 60 |
+
[sample]
|
| 61 |
+
num_samples = 20800
|
| 62 |
+
batch_size = 10000
|
| 63 |
+
seed = 0
|
| 64 |
+
|
| 65 |
+
[eval.type]
|
| 66 |
+
eval_model = "catboost"
|
| 67 |
+
eval_type = "synthetic"
|
| 68 |
+
|
| 69 |
+
[eval.T]
|
| 70 |
+
seed = 0
|
| 71 |
+
normalization = "__none__"
|
| 72 |
+
num_nan_policy = "__none__"
|
| 73 |
+
cat_nan_policy = "__none__"
|
| 74 |
+
cat_min_frequency = "__none__"
|
| 75 |
+
cat_encoding = "__none__"
|
| 76 |
+
y_policy = "default"
|
| 77 |
+
|
| 78 |
+
```
|
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/.gitignore
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
**/**.csv
|
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/README.md
ADDED
|
@@ -0,0 +1,49 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# CTAB-GAN+
|
| 2 |
+
This is the official git paper [CTAB-GAN+: Enhancing Tabular Data Synthesis](https://arxiv.org/abs/2204.00401). Current code is without differential privacy part.
|
| 3 |
+
If you have any question, please contact `z.zhao-8@tudelft.nl` for more information.
|
| 4 |
+
|
| 5 |
+
|
| 6 |
+
## Prerequisite
|
| 7 |
+
|
| 8 |
+
The required package version
|
| 9 |
+
```
|
| 10 |
+
numpy==1.21.0
|
| 11 |
+
torch==1.9.1
|
| 12 |
+
pandas==1.2.4
|
| 13 |
+
sklearn==0.24.1
|
| 14 |
+
dython==0.6.4.post1
|
| 15 |
+
scipy==1.4.1
|
| 16 |
+
```
|
| 17 |
+
The sklean package in newer version has updated its function for `sklearn.mixture.BayesianGaussianMixture`. Therefore, user should use this proposed sklearn version to successfully run the code!
|
| 18 |
+
|
| 19 |
+
## Example
|
| 20 |
+
`Experiment_Script_Adult.ipynb` `Experiment_Script_king.ipynb` are two example notebooks for training CTAB-GAN+ with Adult (classification) and king (regression) datasets. The datasets are alread under `Real_Datasets` folder.
|
| 21 |
+
The evaluation code is also provided.
|
| 22 |
+
|
| 23 |
+
## Problem type
|
| 24 |
+
|
| 25 |
+
You can either indicate your dataset problem type as Classification, Regression. If there is no problem type, you can leave the problem type as None as follows:
|
| 26 |
+
```
|
| 27 |
+
problem_type= {None: None}
|
| 28 |
+
```
|
| 29 |
+
|
| 30 |
+
## For large dataset
|
| 31 |
+
|
| 32 |
+
If your dataset has large number of column, you may encounter the problem that our currnet code cannot encode all of your data since CTAB-GAN+ will wrap the encoded data into an image-like format. What you can do is changing the line 378 and 385 in `model/synthesizer/ctabgan_synthesizer.py`. The number in the `slide` list
|
| 33 |
+
```
|
| 34 |
+
sides = [4, 8, 16, 24, 32]
|
| 35 |
+
```
|
| 36 |
+
is the side size of image. You can enlarge the list to [4, 8, 16, 24, 32, 64] or [4, 8, 16, 24, 32, 64, 128] for accepting larger dataset.
|
| 37 |
+
|
| 38 |
+
## Bibtex
|
| 39 |
+
|
| 40 |
+
To cite this paper, you could use this bibtex
|
| 41 |
+
|
| 42 |
+
```
|
| 43 |
+
@article{zhao2022ctab,
|
| 44 |
+
title={CTAB-GAN+: Enhancing Tabular Data Synthesis},
|
| 45 |
+
author={Zhao, Zilong and Kunar, Aditya and Birke, Robert and Chen, Lydia Y},
|
| 46 |
+
journal={arXiv preprint arXiv:2204.00401},
|
| 47 |
+
year={2022}
|
| 48 |
+
}
|
| 49 |
+
```
|
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/columns.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:f0d9e05a1c251995561cb1f4b2688be2c332a4971a0513d15645089efc0e236a
|
| 3 |
+
size 4355
|
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/model copy/ctabgan.py
ADDED
|
@@ -0,0 +1,70 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""
|
| 2 |
+
Generative model training algorithm based on the CTABGANSynthesiser
|
| 3 |
+
|
| 4 |
+
"""
|
| 5 |
+
import pandas as pd
|
| 6 |
+
import time
|
| 7 |
+
from model.pipeline.data_preparation import DataPrep
|
| 8 |
+
from model.synthesizer.ctabgan_synthesizer import CTABGANSynthesizer
|
| 9 |
+
|
| 10 |
+
import warnings
|
| 11 |
+
|
| 12 |
+
warnings.filterwarnings("ignore")
|
| 13 |
+
|
| 14 |
+
class CTABGAN():
|
| 15 |
+
|
| 16 |
+
def __init__(self,
|
| 17 |
+
df,
|
| 18 |
+
test_ratio = 0.20,
|
| 19 |
+
categorical_columns = [ 'workclass', 'education', 'marital-status', 'occupation', 'relationship', 'race', 'gender', 'native-country', 'income'],
|
| 20 |
+
log_columns = [],
|
| 21 |
+
mixed_columns= {'capital-loss':[0.0],'capital-gain':[0.0]},
|
| 22 |
+
general_columns = ["age"],
|
| 23 |
+
non_categorical_columns = [],
|
| 24 |
+
integer_columns = ['age', 'fnlwgt','capital-gain', 'capital-loss','hours-per-week'],
|
| 25 |
+
problem_type= {"Classification": "income"},
|
| 26 |
+
class_dim=(256, 256, 256, 256),
|
| 27 |
+
random_dim=100,
|
| 28 |
+
num_channels=64,
|
| 29 |
+
l2scale=1e-5,
|
| 30 |
+
batch_size=500,
|
| 31 |
+
epochs=150,
|
| 32 |
+
device="cpu"):
|
| 33 |
+
|
| 34 |
+
self.__name__ = 'CTABGAN'
|
| 35 |
+
|
| 36 |
+
self.synthesizer = CTABGANSynthesizer(
|
| 37 |
+
class_dim=class_dim,
|
| 38 |
+
random_dim=random_dim,
|
| 39 |
+
num_channels=num_channels,
|
| 40 |
+
l2scale=l2scale,
|
| 41 |
+
batch_size=batch_size,
|
| 42 |
+
epochs=epochs,
|
| 43 |
+
device=device
|
| 44 |
+
)
|
| 45 |
+
self.raw_df = df
|
| 46 |
+
self.test_ratio = test_ratio
|
| 47 |
+
self.categorical_columns = categorical_columns
|
| 48 |
+
self.log_columns = log_columns
|
| 49 |
+
self.mixed_columns = mixed_columns
|
| 50 |
+
self.general_columns = general_columns
|
| 51 |
+
self.non_categorical_columns = non_categorical_columns
|
| 52 |
+
self.integer_columns = integer_columns
|
| 53 |
+
self.problem_type = problem_type
|
| 54 |
+
|
| 55 |
+
def fit(self):
|
| 56 |
+
|
| 57 |
+
start_time = time.time()
|
| 58 |
+
self.data_prep = DataPrep(self.raw_df,self.categorical_columns,self.log_columns,self.mixed_columns,self.general_columns,self.non_categorical_columns,self.integer_columns,self.problem_type,self.test_ratio)
|
| 59 |
+
self.synthesizer.fit(train_data=self.data_prep.df, categorical = self.data_prep.column_types["categorical"], mixed = self.data_prep.column_types["mixed"],
|
| 60 |
+
general = self.data_prep.column_types["general"], non_categorical = self.data_prep.column_types["non_categorical"], type=self.problem_type)
|
| 61 |
+
end_time = time.time()
|
| 62 |
+
print('Finished training in',end_time-start_time," seconds.")
|
| 63 |
+
|
| 64 |
+
|
| 65 |
+
def generate_samples(self, seed=0):
|
| 66 |
+
|
| 67 |
+
sample = self.synthesizer.sample(len(self.raw_df), seed)
|
| 68 |
+
sample_df = self.data_prep.inverse_prep(sample)
|
| 69 |
+
|
| 70 |
+
return sample_df
|
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/model copy/eval/evaluation.py
ADDED
|
@@ -0,0 +1,193 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import numpy as np
|
| 2 |
+
import pandas as pd
|
| 3 |
+
from sklearn import metrics
|
| 4 |
+
from sklearn import model_selection
|
| 5 |
+
from sklearn.preprocessing import MinMaxScaler,StandardScaler
|
| 6 |
+
from sklearn.neural_network import MLPClassifier
|
| 7 |
+
from sklearn.linear_model import LogisticRegression
|
| 8 |
+
from sklearn import svm,tree
|
| 9 |
+
from sklearn.ensemble import RandomForestClassifier
|
| 10 |
+
from dython.nominal import compute_associations
|
| 11 |
+
from scipy.stats import wasserstein_distance
|
| 12 |
+
from scipy.spatial import distance
|
| 13 |
+
import warnings
|
| 14 |
+
|
| 15 |
+
warnings.filterwarnings("ignore")
|
| 16 |
+
|
| 17 |
+
def supervised_model_training(x_train, y_train, x_test,
|
| 18 |
+
y_test, model_name):
|
| 19 |
+
|
| 20 |
+
|
| 21 |
+
if model_name == 'lr':
|
| 22 |
+
model = LogisticRegression(random_state=42,max_iter=500)
|
| 23 |
+
elif model_name == 'svm':
|
| 24 |
+
model = svm.SVC(random_state=42,probability=True)
|
| 25 |
+
elif model_name == 'dt':
|
| 26 |
+
model = tree.DecisionTreeClassifier(random_state=42)
|
| 27 |
+
elif model_name == 'rf':
|
| 28 |
+
model = RandomForestClassifier(random_state=42)
|
| 29 |
+
elif model_name == "mlp":
|
| 30 |
+
model = MLPClassifier(random_state=42,max_iter=100)
|
| 31 |
+
|
| 32 |
+
model.fit(x_train, y_train)
|
| 33 |
+
pred = model.predict(x_test)
|
| 34 |
+
|
| 35 |
+
if len(np.unique(y_train))>2:
|
| 36 |
+
predict = model.predict_proba(x_test)
|
| 37 |
+
acc = metrics.accuracy_score(y_test,pred)*100
|
| 38 |
+
auc = metrics.roc_auc_score(y_test, predict,average="weighted",multi_class="ovr")
|
| 39 |
+
f1_score = metrics.precision_recall_fscore_support(y_test, pred,average="weighted")[2]
|
| 40 |
+
return [acc, auc,f1_score]
|
| 41 |
+
|
| 42 |
+
else:
|
| 43 |
+
predict = model.predict_proba(x_test)[:,1]
|
| 44 |
+
acc = metrics.accuracy_score(y_test,pred)*100
|
| 45 |
+
auc = metrics.roc_auc_score(y_test, predict)
|
| 46 |
+
f1_score = metrics.precision_recall_fscore_support(y_test,pred)[2].mean()
|
| 47 |
+
return [acc, auc,f1_score]
|
| 48 |
+
|
| 49 |
+
|
| 50 |
+
def get_utility_metrics(real_path,fake_paths,scaler="MinMax",classifiers=["lr","dt","rf","mlp"],test_ratio=.20):
|
| 51 |
+
|
| 52 |
+
data_real = pd.read_csv(real_path).to_numpy()
|
| 53 |
+
data_dim = data_real.shape[1]
|
| 54 |
+
|
| 55 |
+
data_real_y = data_real[:,-1]
|
| 56 |
+
data_real_X = data_real[:,:data_dim-1]
|
| 57 |
+
X_train_real, X_test_real, y_train_real, y_test_real = model_selection.train_test_split(data_real_X ,data_real_y, test_size=test_ratio, stratify=data_real_y,random_state=42)
|
| 58 |
+
|
| 59 |
+
if scaler=="MinMax":
|
| 60 |
+
scaler_real = MinMaxScaler()
|
| 61 |
+
else:
|
| 62 |
+
scaler_real = StandardScaler()
|
| 63 |
+
|
| 64 |
+
scaler_real.fit(data_real_X)
|
| 65 |
+
X_train_real_scaled = scaler_real.transform(X_train_real)
|
| 66 |
+
X_test_real_scaled = scaler_real.transform(X_test_real)
|
| 67 |
+
|
| 68 |
+
all_real_results = []
|
| 69 |
+
for classifier in classifiers:
|
| 70 |
+
real_results = supervised_model_training(X_train_real_scaled,y_train_real,X_test_real_scaled,y_test_real,classifier)
|
| 71 |
+
all_real_results.append(real_results)
|
| 72 |
+
|
| 73 |
+
all_fake_results_avg = []
|
| 74 |
+
|
| 75 |
+
for fake_path in fake_paths:
|
| 76 |
+
data_fake = pd.read_csv(fake_path).to_numpy()
|
| 77 |
+
data_fake_y = data_fake[:,-1]
|
| 78 |
+
data_fake_X = data_fake[:,:data_dim-1]
|
| 79 |
+
X_train_fake, _ , y_train_fake, _ = model_selection.train_test_split(data_fake_X ,data_fake_y, test_size=test_ratio, stratify=data_fake_y,random_state=42)
|
| 80 |
+
|
| 81 |
+
if scaler=="MinMax":
|
| 82 |
+
scaler_fake = MinMaxScaler()
|
| 83 |
+
else:
|
| 84 |
+
scaler_fake = StandardScaler()
|
| 85 |
+
|
| 86 |
+
scaler_fake.fit(data_fake_X)
|
| 87 |
+
|
| 88 |
+
X_train_fake_scaled = scaler_fake.transform(X_train_fake)
|
| 89 |
+
|
| 90 |
+
all_fake_results = []
|
| 91 |
+
for classifier in classifiers:
|
| 92 |
+
fake_results = supervised_model_training(X_train_fake_scaled,y_train_fake,X_test_real_scaled,y_test_real,classifier)
|
| 93 |
+
all_fake_results.append(fake_results)
|
| 94 |
+
|
| 95 |
+
all_fake_results_avg.append(all_fake_results)
|
| 96 |
+
|
| 97 |
+
diff_results = np.array(all_real_results)- np.array(all_fake_results_avg).mean(axis=0)
|
| 98 |
+
|
| 99 |
+
return diff_results
|
| 100 |
+
|
| 101 |
+
def stat_sim(real_path,fake_path,cat_cols=None):
|
| 102 |
+
|
| 103 |
+
Stat_dict={}
|
| 104 |
+
|
| 105 |
+
real = pd.read_csv(real_path)
|
| 106 |
+
fake = pd.read_csv(fake_path)
|
| 107 |
+
|
| 108 |
+
really = real.copy()
|
| 109 |
+
fakey = fake.copy()
|
| 110 |
+
|
| 111 |
+
real_corr = compute_associations(real, nominal_columns=cat_cols)
|
| 112 |
+
|
| 113 |
+
fake_corr = compute_associations(fake, nominal_columns=cat_cols)
|
| 114 |
+
|
| 115 |
+
corr_dist = np.linalg.norm(real_corr - fake_corr)
|
| 116 |
+
|
| 117 |
+
cat_stat = []
|
| 118 |
+
num_stat = []
|
| 119 |
+
|
| 120 |
+
for column in real.columns:
|
| 121 |
+
|
| 122 |
+
if column in cat_cols:
|
| 123 |
+
|
| 124 |
+
real_pdf=(really[column].value_counts()/really[column].value_counts().sum())
|
| 125 |
+
fake_pdf=(fakey[column].value_counts()/fakey[column].value_counts().sum())
|
| 126 |
+
categories = (fakey[column].value_counts()/fakey[column].value_counts().sum()).keys().tolist()
|
| 127 |
+
sorted_categories = sorted(categories)
|
| 128 |
+
|
| 129 |
+
real_pdf_values = []
|
| 130 |
+
fake_pdf_values = []
|
| 131 |
+
|
| 132 |
+
for i in sorted_categories:
|
| 133 |
+
real_pdf_values.append(real_pdf[i])
|
| 134 |
+
fake_pdf_values.append(fake_pdf[i])
|
| 135 |
+
|
| 136 |
+
if len(real_pdf)!=len(fake_pdf):
|
| 137 |
+
zero_cats = set(really[column].value_counts().keys())-set(fakey[column].value_counts().keys())
|
| 138 |
+
for z in zero_cats:
|
| 139 |
+
real_pdf_values.append(real_pdf[z])
|
| 140 |
+
fake_pdf_values.append(0)
|
| 141 |
+
Stat_dict[column]=(distance.jensenshannon(real_pdf_values,fake_pdf_values, 2.0))
|
| 142 |
+
cat_stat.append(Stat_dict[column])
|
| 143 |
+
else:
|
| 144 |
+
scaler = MinMaxScaler()
|
| 145 |
+
scaler.fit(real[column].values.reshape(-1,1))
|
| 146 |
+
l1 = scaler.transform(real[column].values.reshape(-1,1)).flatten()
|
| 147 |
+
l2 = scaler.transform(fake[column].values.reshape(-1,1)).flatten()
|
| 148 |
+
Stat_dict[column]= (wasserstein_distance(l1,l2))
|
| 149 |
+
num_stat.append(Stat_dict[column])
|
| 150 |
+
|
| 151 |
+
return [np.mean(num_stat),np.mean(cat_stat),corr_dist]
|
| 152 |
+
|
| 153 |
+
def privacy_metrics(real_path,fake_path,data_percent=15):
|
| 154 |
+
|
| 155 |
+
real = pd.read_csv(real_path).drop_duplicates(keep=False)
|
| 156 |
+
fake = pd.read_csv(fake_path).drop_duplicates(keep=False)
|
| 157 |
+
|
| 158 |
+
real_refined = real.sample(n=int(len(real)*(.01*data_percent)), random_state=42).to_numpy()
|
| 159 |
+
fake_refined = fake.sample(n=int(len(fake)*(.01*data_percent)), random_state=42).to_numpy()
|
| 160 |
+
|
| 161 |
+
scalerR = StandardScaler()
|
| 162 |
+
scalerR.fit(real_refined)
|
| 163 |
+
scalerF = StandardScaler()
|
| 164 |
+
scalerF.fit(fake_refined)
|
| 165 |
+
df_real_scaled = scalerR.transform(real_refined)
|
| 166 |
+
df_fake_scaled = scalerF.transform(fake_refined)
|
| 167 |
+
|
| 168 |
+
dist_rf = metrics.pairwise_distances(df_real_scaled, Y=df_fake_scaled, metric='minkowski', n_jobs=-1)
|
| 169 |
+
dist_rr = metrics.pairwise_distances(df_real_scaled, Y=None, metric='minkowski', n_jobs=-1)
|
| 170 |
+
rd_dist_rr = dist_rr[~np.eye(dist_rr.shape[0],dtype=bool)].reshape(dist_rr.shape[0],-1)
|
| 171 |
+
dist_ff = metrics.pairwise_distances(df_fake_scaled, Y=None, metric='minkowski', n_jobs=-1)
|
| 172 |
+
rd_dist_ff = dist_ff[~np.eye(dist_ff.shape[0],dtype=bool)].reshape(dist_ff.shape[0],-1)
|
| 173 |
+
smallest_two_indexes_rf = [dist_rf[i].argsort()[:2] for i in range(len(dist_rf))]
|
| 174 |
+
smallest_two_rf = [dist_rf[i][smallest_two_indexes_rf[i]] for i in range(len(dist_rf))]
|
| 175 |
+
smallest_two_indexes_rr = [rd_dist_rr[i].argsort()[:2] for i in range(len(rd_dist_rr))]
|
| 176 |
+
smallest_two_rr = [rd_dist_rr[i][smallest_two_indexes_rr[i]] for i in range(len(rd_dist_rr))]
|
| 177 |
+
smallest_two_indexes_ff = [rd_dist_ff[i].argsort()[:2] for i in range(len(rd_dist_ff))]
|
| 178 |
+
smallest_two_ff = [rd_dist_ff[i][smallest_two_indexes_ff[i]] for i in range(len(rd_dist_ff))]
|
| 179 |
+
nn_ratio_rr = np.array([i[0]/i[1] for i in smallest_two_rr])
|
| 180 |
+
nn_ratio_ff = np.array([i[0]/i[1] for i in smallest_two_ff])
|
| 181 |
+
nn_ratio_rf = np.array([i[0]/i[1] for i in smallest_two_rf])
|
| 182 |
+
nn_fifth_perc_rr = np.percentile(nn_ratio_rr,5)
|
| 183 |
+
nn_fifth_perc_ff = np.percentile(nn_ratio_ff,5)
|
| 184 |
+
nn_fifth_perc_rf = np.percentile(nn_ratio_rf,5)
|
| 185 |
+
|
| 186 |
+
min_dist_rf = np.array([i[0] for i in smallest_two_rf])
|
| 187 |
+
fifth_perc_rf = np.percentile(min_dist_rf,5)
|
| 188 |
+
min_dist_rr = np.array([i[0] for i in smallest_two_rr])
|
| 189 |
+
fifth_perc_rr = np.percentile(min_dist_rr,5)
|
| 190 |
+
min_dist_ff = np.array([i[0] for i in smallest_two_ff])
|
| 191 |
+
fifth_perc_ff = np.percentile(min_dist_ff,5)
|
| 192 |
+
|
| 193 |
+
return np.array([fifth_perc_rf,fifth_perc_rr,fifth_perc_ff,nn_fifth_perc_rf,nn_fifth_perc_rr,nn_fifth_perc_ff]).reshape(1,6)
|
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/model copy/pipeline/data_preparation.py
ADDED
|
@@ -0,0 +1,130 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import numpy as np
|
| 2 |
+
import pandas as pd
|
| 3 |
+
from sklearn import preprocessing
|
| 4 |
+
from sklearn import model_selection
|
| 5 |
+
|
| 6 |
+
class DataPrep(object):
|
| 7 |
+
|
| 8 |
+
def __init__(self, raw_df: pd.DataFrame, categorical: list, log:list, mixed:dict, general:list, non_categorical:list, integer:list, type:dict, test_ratio:float):
|
| 9 |
+
|
| 10 |
+
|
| 11 |
+
self.categorical_columns = categorical
|
| 12 |
+
self.log_columns = log
|
| 13 |
+
self.mixed_columns = mixed
|
| 14 |
+
self.general_columns = general
|
| 15 |
+
self.non_categorical_columns = non_categorical
|
| 16 |
+
self.integer_columns = integer
|
| 17 |
+
self.column_types = dict()
|
| 18 |
+
self.column_types["categorical"] = []
|
| 19 |
+
self.column_types["mixed"] = {}
|
| 20 |
+
self.column_types["general"] = []
|
| 21 |
+
self.column_types["non_categorical"] = []
|
| 22 |
+
self.lower_bounds = {}
|
| 23 |
+
self.label_encoder_list = []
|
| 24 |
+
|
| 25 |
+
target_col = list(type.values())[0]
|
| 26 |
+
if target_col is not None:
|
| 27 |
+
y_real = raw_df[target_col]
|
| 28 |
+
X_real = raw_df.drop(columns=[target_col])
|
| 29 |
+
X_train_real, _, y_train_real, _ = model_selection.train_test_split(X_real ,y_real, test_size=test_ratio, stratify=y_real,random_state=42)
|
| 30 |
+
|
| 31 |
+
X_train_real[target_col]= y_train_real
|
| 32 |
+
|
| 33 |
+
self.df = X_train_real
|
| 34 |
+
else:
|
| 35 |
+
self.df = raw_df
|
| 36 |
+
|
| 37 |
+
self.df = self.df.replace(r' ', np.nan)
|
| 38 |
+
self.df = self.df.fillna('empty')
|
| 39 |
+
|
| 40 |
+
all_columns= set(self.df.columns)
|
| 41 |
+
irrelevant_missing_columns = set(self.categorical_columns)
|
| 42 |
+
relevant_missing_columns = list(all_columns - irrelevant_missing_columns)
|
| 43 |
+
|
| 44 |
+
for i in relevant_missing_columns:
|
| 45 |
+
if i in self.log_columns:
|
| 46 |
+
if "empty" in list(self.df[i].values):
|
| 47 |
+
self.df[i] = self.df[i].apply(lambda x: -9999999 if x=="empty" else x)
|
| 48 |
+
self.mixed_columns[i] = [-9999999]
|
| 49 |
+
elif i in list(self.mixed_columns.keys()):
|
| 50 |
+
if "empty" in list(self.df[i].values):
|
| 51 |
+
self.df[i] = self.df[i].apply(lambda x: -9999999 if x=="empty" else x )
|
| 52 |
+
self.mixed_columns[i].append(-9999999)
|
| 53 |
+
else:
|
| 54 |
+
if "empty" in list(self.df[i].values):
|
| 55 |
+
self.df[i] = self.df[i].apply(lambda x: -9999999 if x=="empty" else x)
|
| 56 |
+
self.mixed_columns[i] = [-9999999]
|
| 57 |
+
|
| 58 |
+
if self.log_columns:
|
| 59 |
+
for log_column in self.log_columns:
|
| 60 |
+
valid_indices = []
|
| 61 |
+
for idx,val in enumerate(self.df[log_column].values):
|
| 62 |
+
if val!=-9999999:
|
| 63 |
+
valid_indices.append(idx)
|
| 64 |
+
eps = 1
|
| 65 |
+
lower = np.min(self.df[log_column].iloc[valid_indices].values)
|
| 66 |
+
self.lower_bounds[log_column] = lower
|
| 67 |
+
if lower>0:
|
| 68 |
+
self.df[log_column] = self.df[log_column].apply(lambda x: np.log(x) if x!=-9999999 else -9999999)
|
| 69 |
+
elif lower == 0:
|
| 70 |
+
self.df[log_column] = self.df[log_column].apply(lambda x: np.log(x+eps) if x!=-9999999 else -9999999)
|
| 71 |
+
else:
|
| 72 |
+
self.df[log_column] = self.df[log_column].apply(lambda x: np.log(x-lower+eps) if x!=-9999999 else -9999999)
|
| 73 |
+
|
| 74 |
+
for column_index, column in enumerate(self.df.columns):
|
| 75 |
+
if column in self.categorical_columns:
|
| 76 |
+
label_encoder = preprocessing.LabelEncoder()
|
| 77 |
+
self.df[column] = self.df[column].astype(str)
|
| 78 |
+
label_encoder.fit(self.df[column])
|
| 79 |
+
current_label_encoder = dict()
|
| 80 |
+
current_label_encoder['column'] = column
|
| 81 |
+
current_label_encoder['label_encoder'] = label_encoder
|
| 82 |
+
transformed_column = label_encoder.transform(self.df[column])
|
| 83 |
+
self.df[column] = transformed_column
|
| 84 |
+
self.label_encoder_list.append(current_label_encoder)
|
| 85 |
+
self.column_types["categorical"].append(column_index)
|
| 86 |
+
|
| 87 |
+
if column in self.general_columns:
|
| 88 |
+
self.column_types["general"].append(column_index)
|
| 89 |
+
|
| 90 |
+
if column in self.non_categorical_columns:
|
| 91 |
+
self.column_types["non_categorical"].append(column_index)
|
| 92 |
+
|
| 93 |
+
elif column in self.mixed_columns:
|
| 94 |
+
self.column_types["mixed"][column_index] = self.mixed_columns[column]
|
| 95 |
+
|
| 96 |
+
elif column in self.general_columns:
|
| 97 |
+
self.column_types["general"].append(column_index)
|
| 98 |
+
|
| 99 |
+
|
| 100 |
+
super().__init__()
|
| 101 |
+
|
| 102 |
+
def inverse_prep(self, data, eps=1):
|
| 103 |
+
|
| 104 |
+
df_sample = pd.DataFrame(data,columns=self.df.columns)
|
| 105 |
+
|
| 106 |
+
for i in range(len(self.label_encoder_list)):
|
| 107 |
+
le = self.label_encoder_list[i]["label_encoder"]
|
| 108 |
+
df_sample[self.label_encoder_list[i]["column"]] = df_sample[self.label_encoder_list[i]["column"]].astype(int)
|
| 109 |
+
df_sample[self.label_encoder_list[i]["column"]] = le.inverse_transform(df_sample[self.label_encoder_list[i]["column"]])
|
| 110 |
+
|
| 111 |
+
if self.log_columns:
|
| 112 |
+
for i in df_sample:
|
| 113 |
+
if i in self.log_columns:
|
| 114 |
+
lower_bound = self.lower_bounds[i]
|
| 115 |
+
if lower_bound>0:
|
| 116 |
+
df_sample[i].apply(lambda x: np.exp(x))
|
| 117 |
+
elif lower_bound==0:
|
| 118 |
+
df_sample[i] = df_sample[i].apply(lambda x: np.ceil(np.exp(x)-eps) if (np.exp(x)-eps) < 0 else (np.exp(x)-eps))
|
| 119 |
+
else:
|
| 120 |
+
df_sample[i] = df_sample[i].apply(lambda x: np.exp(x)-eps+lower_bound)
|
| 121 |
+
|
| 122 |
+
if self.integer_columns:
|
| 123 |
+
for column in self.integer_columns:
|
| 124 |
+
df_sample[column]= (np.round(df_sample[column].values))
|
| 125 |
+
df_sample[column] = df_sample[column].astype(int)
|
| 126 |
+
|
| 127 |
+
df_sample.replace(-9999999, np.nan,inplace=True)
|
| 128 |
+
df_sample.replace('empty', np.nan,inplace=True)
|
| 129 |
+
|
| 130 |
+
return df_sample
|
SynthData0523/main/c6/tabddpm/tabddpm-c6-20260510_222430/_tabddpm_runtime/CTAB-GAN-Plus/model copy/privacy_utils/rdp_accountant.py
ADDED
|
@@ -0,0 +1,280 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
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|
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|
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|
| 1 |
+
from __future__ import absolute_import
|
| 2 |
+
from __future__ import division
|
| 3 |
+
from __future__ import print_function
|
| 4 |
+
|
| 5 |
+
import math
|
| 6 |
+
import sys
|
| 7 |
+
|
| 8 |
+
import numpy as np
|
| 9 |
+
from scipy import special
|
| 10 |
+
import six
|
| 11 |
+
|
| 12 |
+
########################
|
| 13 |
+
# LOG-SPACE ARITHMETIC #
|
| 14 |
+
########################
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
def _log_add(logx, logy):
|
| 18 |
+
"""Add two numbers in the log space."""
|
| 19 |
+
a, b = min(logx, logy), max(logx, logy)
|
| 20 |
+
if a == -np.inf: # adding 0
|
| 21 |
+
return b
|
| 22 |
+
# Use exp(a) + exp(b) = (exp(a - b) + 1) * exp(b)
|
| 23 |
+
return math.log1p(math.exp(a - b)) + b # log1p(x) = log(x + 1)
|
| 24 |
+
|
| 25 |
+
|
| 26 |
+
def _log_sub(logx, logy):
|
| 27 |
+
"""Subtract two numbers in the log space. Answer must be non-negative."""
|
| 28 |
+
if logx < logy:
|
| 29 |
+
raise ValueError("The result of subtraction must be non-negative.")
|
| 30 |
+
if logy == -np.inf: # subtracting 0
|
| 31 |
+
return logx
|
| 32 |
+
if logx == logy:
|
| 33 |
+
return -np.inf # 0 is represented as -np.inf in the log space.
|
| 34 |
+
|
| 35 |
+
try:
|
| 36 |
+
# Use exp(x) - exp(y) = (exp(x - y) - 1) * exp(y).
|
| 37 |
+
return math.log(math.expm1(logx - logy)) + logy # expm1(x) = exp(x) - 1
|
| 38 |
+
except OverflowError:
|
| 39 |
+
return logx
|
| 40 |
+
|
| 41 |
+
|
| 42 |
+
def _log_print(logx):
|
| 43 |
+
"""Pretty print."""
|
| 44 |
+
if logx < math.log(sys.float_info.max):
|
| 45 |
+
return "{}".format(math.exp(logx))
|
| 46 |
+
else:
|
| 47 |
+
return "exp({})".format(logx)
|
| 48 |
+
|
| 49 |
+
|
| 50 |
+
def _compute_log_a_int(q, sigma, alpha):
|
| 51 |
+
"""Compute log(A_alpha) for integer alpha. 0 < q < 1."""
|
| 52 |
+
assert isinstance(alpha, six.integer_types)
|
| 53 |
+
|
| 54 |
+
# Initialize with 0 in the log space.
|
| 55 |
+
log_a = -np.inf
|
| 56 |
+
|
| 57 |
+
for i in range(alpha + 1):
|
| 58 |
+
log_coef_i = (
|
| 59 |
+
math.log(special.binom(alpha, i)) + i * math.log(q) +
|
| 60 |
+
(alpha - i) * math.log(1 - q))
|
| 61 |
+
|
| 62 |
+
s = log_coef_i + (i * i - i) / (2 * (sigma**2))
|
| 63 |
+
log_a = _log_add(log_a, s)
|
| 64 |
+
|
| 65 |
+
return float(log_a)
|
| 66 |
+
|
| 67 |
+
|
| 68 |
+
def _compute_log_a_frac(q, sigma, alpha):
|
| 69 |
+
"""Compute log(A_alpha) for fractional alpha. 0 < q < 1."""
|
| 70 |
+
# The two parts of A_alpha, integrals over (-inf,z0] and [z0, +inf), are
|
| 71 |
+
# initialized to 0 in the log space:
|
| 72 |
+
log_a0, log_a1 = -np.inf, -np.inf
|
| 73 |
+
i = 0
|
| 74 |
+
|
| 75 |
+
z0 = sigma**2 * math.log(1 / q - 1) + .5
|
| 76 |
+
|
| 77 |
+
while True: # do ... until loop
|
| 78 |
+
coef = special.binom(alpha, i)
|
| 79 |
+
log_coef = math.log(abs(coef))
|
| 80 |
+
j = alpha - i
|
| 81 |
+
|
| 82 |
+
log_t0 = log_coef + i * math.log(q) + j * math.log(1 - q)
|
| 83 |
+
log_t1 = log_coef + j * math.log(q) + i * math.log(1 - q)
|
| 84 |
+
|
| 85 |
+
log_e0 = math.log(.5) + _log_erfc((i - z0) / (math.sqrt(2) * sigma))
|
| 86 |
+
log_e1 = math.log(.5) + _log_erfc((z0 - j) / (math.sqrt(2) * sigma))
|
| 87 |
+
|
| 88 |
+
log_s0 = log_t0 + (i * i - i) / (2 * (sigma**2)) + log_e0
|
| 89 |
+
log_s1 = log_t1 + (j * j - j) / (2 * (sigma**2)) + log_e1
|
| 90 |
+
|
| 91 |
+
if coef > 0:
|
| 92 |
+
log_a0 = _log_add(log_a0, log_s0)
|
| 93 |
+
log_a1 = _log_add(log_a1, log_s1)
|
| 94 |
+
else:
|
| 95 |
+
log_a0 = _log_sub(log_a0, log_s0)
|
| 96 |
+
log_a1 = _log_sub(log_a1, log_s1)
|
| 97 |
+
|
| 98 |
+
i += 1
|
| 99 |
+
if max(log_s0, log_s1) < -30:
|
| 100 |
+
break
|
| 101 |
+
|
| 102 |
+
return _log_add(log_a0, log_a1)
|
| 103 |
+
|
| 104 |
+
|
| 105 |
+
def _compute_log_a(q, sigma, alpha):
|
| 106 |
+
"""Compute log(A_alpha) for any positive finite alpha."""
|
| 107 |
+
if float(alpha).is_integer():
|
| 108 |
+
return _compute_log_a_int(q, sigma, int(alpha))
|
| 109 |
+
else:
|
| 110 |
+
return _compute_log_a_frac(q, sigma, alpha)
|
| 111 |
+
|
| 112 |
+
|
| 113 |
+
def _log_erfc(x):
|
| 114 |
+
"""Compute log(erfc(x)) with high accuracy for large x."""
|
| 115 |
+
try:
|
| 116 |
+
return math.log(2) + special.log_ndtr(-x * 2**.5)
|
| 117 |
+
except NameError:
|
| 118 |
+
# If log_ndtr is not available, approximate as follows:
|
| 119 |
+
r = special.erfc(x)
|
| 120 |
+
if r == 0.0:
|
| 121 |
+
# Using the Laurent series at infinity for the tail of the erfc function:
|
| 122 |
+
# erfc(x) ~ exp(-x^2-.5/x^2+.625/x^4)/(x*pi^.5)
|
| 123 |
+
# To verify in Mathematica:
|
| 124 |
+
# Series[Log[Erfc[x]] + Log[x] + Log[Pi]/2 + x^2, {x, Infinity, 6}]
|
| 125 |
+
return (-math.log(math.pi) / 2 - math.log(x) - x**2 - .5 * x**-2 +
|
| 126 |
+
.625 * x**-4 - 37. / 24. * x**-6 + 353. / 64. * x**-8)
|
| 127 |
+
else:
|
| 128 |
+
return math.log(r)
|
| 129 |
+
|
| 130 |
+
|
| 131 |
+
def _compute_delta(orders, rdp, eps):
|
| 132 |
+
"""Compute delta given a list of RDP values and target epsilon.
|
| 133 |
+
|
| 134 |
+
Args:
|
| 135 |
+
orders: An array (or a scalar) of orders.
|
| 136 |
+
rdp: A list (or a scalar) of RDP guarantees.
|
| 137 |
+
eps: The target epsilon.
|
| 138 |
+
|
| 139 |
+
Returns:
|
| 140 |
+
Pair of (delta, optimal_order).
|
| 141 |
+
|
| 142 |
+
Raises:
|
| 143 |
+
ValueError: If input is malformed.
|
| 144 |
+
|
| 145 |
+
"""
|
| 146 |
+
orders_vec = np.atleast_1d(orders)
|
| 147 |
+
rdp_vec = np.atleast_1d(rdp)
|
| 148 |
+
|
| 149 |
+
if len(orders_vec) != len(rdp_vec):
|
| 150 |
+
raise ValueError("Input lists must have the same length.")
|
| 151 |
+
|
| 152 |
+
deltas = np.exp((rdp_vec - eps) * (orders_vec - 1))
|
| 153 |
+
idx_opt = np.argmin(deltas)
|
| 154 |
+
return min(deltas[idx_opt], 1.), orders_vec[idx_opt]
|
| 155 |
+
|
| 156 |
+
|
| 157 |
+
def _compute_eps(orders, rdp, delta):
|
| 158 |
+
"""Compute epsilon given a list of RDP values and target delta.
|
| 159 |
+
|
| 160 |
+
Args:
|
| 161 |
+
orders: An array (or a scalar) of orders.
|
| 162 |
+
rdp: A list (or a scalar) of RDP guarantees.
|
| 163 |
+
delta: The target delta.
|
| 164 |
+
|
| 165 |
+
Returns:
|
| 166 |
+
Pair of (eps, optimal_order).
|
| 167 |
+
|
| 168 |
+
Raises:
|
| 169 |
+
ValueError: If input is malformed.
|
| 170 |
+
|
| 171 |
+
"""
|
| 172 |
+
orders_vec = np.atleast_1d(orders)
|
| 173 |
+
rdp_vec = np.atleast_1d(rdp)
|
| 174 |
+
|
| 175 |
+
if len(orders_vec) != len(rdp_vec):
|
| 176 |
+
raise ValueError("Input lists must have the same length.")
|
| 177 |
+
|
| 178 |
+
eps = rdp_vec - math.log(delta) / (orders_vec - 1)
|
| 179 |
+
|
| 180 |
+
idx_opt = np.nanargmin(eps) # Ignore NaNs
|
| 181 |
+
return eps[idx_opt], orders_vec[idx_opt]
|
| 182 |
+
|
| 183 |
+
|
| 184 |
+
def _compute_rdp(q, sigma, alpha):
|
| 185 |
+
"""Compute RDP of the Sampled Gaussian mechanism at order alpha.
|
| 186 |
+
|
| 187 |
+
Args:
|
| 188 |
+
q: The sampling rate.
|
| 189 |
+
sigma: The std of the additive Gaussian noise.
|
| 190 |
+
alpha: The order at which RDP is computed.
|
| 191 |
+
|
| 192 |
+
Returns:
|
| 193 |
+
RDP at alpha, can be np.inf.
|
| 194 |
+
"""
|
| 195 |
+
if q == 0:
|
| 196 |
+
return 0
|
| 197 |
+
|
| 198 |
+
if q == 1.:
|
| 199 |
+
return alpha / (2 * sigma**2)
|
| 200 |
+
|
| 201 |
+
if np.isinf(alpha):
|
| 202 |
+
return np.inf
|
| 203 |
+
|
| 204 |
+
return _compute_log_a(q, sigma, alpha) / (alpha - 1)
|
| 205 |
+
|
| 206 |
+
|
| 207 |
+
def compute_rdp(q, noise_multiplier, steps, orders):
|
| 208 |
+
"""Compute RDP of the Sampled Gaussian Mechanism.
|
| 209 |
+
|
| 210 |
+
Args:
|
| 211 |
+
q: The sampling rate.
|
| 212 |
+
noise_multiplier: The ratio of the standard deviation of the Gaussian noise
|
| 213 |
+
to the l2-sensitivity of the function to which it is added.
|
| 214 |
+
steps: The number of steps.
|
| 215 |
+
orders: An array (or a scalar) of RDP orders.
|
| 216 |
+
|
| 217 |
+
Returns:
|
| 218 |
+
The RDPs at all orders, can be np.inf.
|
| 219 |
+
"""
|
| 220 |
+
if np.isscalar(orders):
|
| 221 |
+
rdp = _compute_rdp(q, noise_multiplier, orders)
|
| 222 |
+
else:
|
| 223 |
+
rdp = np.array([_compute_rdp(q, noise_multiplier, order)
|
| 224 |
+
for order in orders])
|
| 225 |
+
|
| 226 |
+
return rdp * steps
|
| 227 |
+
|
| 228 |
+
|
| 229 |
+
def get_privacy_spent(orders, rdp, target_eps=None, target_delta=None):
|
| 230 |
+
"""Compute delta (or eps) for given eps (or delta) from RDP values.
|
| 231 |
+
|
| 232 |
+
Args:
|
| 233 |
+
orders: An array (or a scalar) of RDP orders.
|
| 234 |
+
rdp: An array of RDP values. Must be of the same length as the orders list.
|
| 235 |
+
target_eps: If not None, the epsilon for which we compute the corresponding
|
| 236 |
+
delta.
|
| 237 |
+
target_delta: If not None, the delta for which we compute the corresponding
|
| 238 |
+
epsilon. Exactly one of target_eps and target_delta must be None.
|
| 239 |
+
|
| 240 |
+
Returns:
|
| 241 |
+
eps, delta, opt_order.
|
| 242 |
+
|
| 243 |
+
Raises:
|
| 244 |
+
ValueError: If target_eps and target_delta are messed up.
|
| 245 |
+
"""
|
| 246 |
+
if target_eps is None and target_delta is None:
|
| 247 |
+
raise ValueError(
|
| 248 |
+
"Exactly one out of eps and delta must be None. (Both are).")
|
| 249 |
+
|
| 250 |
+
if target_eps is not None and target_delta is not None:
|
| 251 |
+
raise ValueError(
|
| 252 |
+
"Exactly one out of eps and delta must be None. (None is).")
|
| 253 |
+
|
| 254 |
+
if target_eps is not None:
|
| 255 |
+
delta, opt_order = _compute_delta(orders, rdp, target_eps)
|
| 256 |
+
return target_eps, delta, opt_order
|
| 257 |
+
else:
|
| 258 |
+
eps, opt_order = _compute_eps(orders, rdp, target_delta)
|
| 259 |
+
return eps, target_delta, opt_order
|
| 260 |
+
|
| 261 |
+
|
| 262 |
+
def compute_rdp_from_ledger(ledger, orders):
|
| 263 |
+
"""Compute RDP of Sampled Gaussian Mechanism from ledger.
|
| 264 |
+
|
| 265 |
+
Args:
|
| 266 |
+
ledger: A formatted privacy ledger.
|
| 267 |
+
orders: An array (or a scalar) of RDP orders.
|
| 268 |
+
|
| 269 |
+
Returns:
|
| 270 |
+
RDP at all orders, can be np.inf.
|
| 271 |
+
"""
|
| 272 |
+
total_rdp = np.zeros_like(orders, dtype=float)
|
| 273 |
+
for sample in ledger:
|
| 274 |
+
# Compute equivalent z from l2_clip_bounds and noise stddevs in sample.
|
| 275 |
+
# See https://arxiv.org/pdf/1812.06210.pdf for derivation of this formula.
|
| 276 |
+
effective_z = sum([
|
| 277 |
+
(q.noise_stddev / q.l2_norm_bound)**-2 for q in sample.queries])**-0.5
|
| 278 |
+
total_rdp += compute_rdp(
|
| 279 |
+
sample.selection_probability, effective_z, 1, orders)
|
| 280 |
+
return total_rdp
|