diff --git a/.gitattributes b/.gitattributes index 888fef8c65cee64b2bde19b74655f3090d38bdb7..3971b40bc35ebfab857b129e5cd42fe37433ba4d 100644 --- a/.gitattributes +++ b/.gitattributes @@ -4141,3 +4141,25 @@ SynthData0523/main/c20/tvae/tvae-c20-20260320_070116/staged/public/train.csv fil SynthData0523/main/c20/tvae/tvae-c20-20260320_070116/staged/public/val.csv filter=lfs diff=lfs merge=lfs -text SynthData0523/main/c20/tvae/tvae-c20-20260320_070116/tvae-c20-1000-20260320_070936.csv filter=lfs diff=lfs merge=lfs -text SynthData0523/main/c20/tvae/tvae-c20-20260320_070116/tvae-c20-35855-20260330_065500.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf-c3-1000-20260321_060705.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf-c3-2551-20260330_065245.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf_model.pkl filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/arf/arf-c3-20260321_060642/gen_20260321_060705.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/arf/arf-c3-20260321_060642/gen_20260330_065245.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/test.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/train.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/val.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/arf/arf-c3-20260321_060642/train_20260321_060642.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet-c3-1000-20260321_060813.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet-c3-2551-20260330_065246.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet_model.pkl filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/gen_20260321_060813.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/gen_20260330_065246.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/test.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/train.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/val.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/train_20260321_060730.log filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/ctgan-c3-1000-20260322_064442.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/ctgan-c3-2551-20260330_065244.csv filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/models_300epochs/ctgan_300epochs.pt filter=lfs diff=lfs merge=lfs -text +SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/models_300epochs/train_20260322_064041.log filter=lfs diff=lfs merge=lfs -text diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/_arf_generate.py b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/_arf_generate.py new file mode 100644 index 0000000000000000000000000000000000000000..abb4d2481655d3df3f8ef04a9a485ef8cb8547a0 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/_arf_generate.py @@ -0,0 +1,6 @@ +import pickle +with open("/work/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/arf_model.pkl", "rb") as f: + model = pickle.load(f) +syn = model.forge(n=2551) +syn.to_csv("/work/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/arf-c3-2551-20260330_065245.csv", index=False) +print(f"[ARF] Generated 2551 rows -> /work/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/arf-c3-2551-20260330_065245.csv") diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/_arf_train.py b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/_arf_train.py new file mode 100644 index 0000000000000000000000000000000000000000..3160d4c168ef551bd367157d7a4821599759dd3c --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/_arf_train.py @@ -0,0 +1,19 @@ +import pickle +import pandas as pd +from arfpy import arf + +df = pd.read_csv("/work/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/staged/public/train.csv") +df = df.dropna(axis=1, how="all") +print(f"[ARF] Training on {len(df)} rows, {len(df.columns)} cols") + +model = arf.arf(x=df) +if hasattr(model, "fit"): + model.fit() +elif hasattr(model, "forde"): + model.forde() +else: + raise RuntimeError("arfpy API: no fit() / forde()") + +with open("/work/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/arf_model.pkl", "wb") as f: + pickle.dump(model, f) +print(f"[ARF] Model saved -> /work/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/arf_model.pkl") diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf-c3-1000-20260321_060705.csv b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf-c3-1000-20260321_060705.csv new file mode 100644 index 0000000000000000000000000000000000000000..f45cb6c15962eb6ff8e4c83d2b73c47ec803e2d6 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf-c3-1000-20260321_060705.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cd6feeac5fc8ee5ba53b9fab2fa83e64fb1a51515c93b117742d8717fb3bba38 +size 82553 diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf-c3-2551-20260330_065245.csv b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf-c3-2551-20260330_065245.csv new file mode 100644 index 0000000000000000000000000000000000000000..d6c019288a294cfe54e062799b6c8f77610d41c1 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf-c3-2551-20260330_065245.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:49657dd521742fb83de82074f557a1386bc4c564796907e24402395338de2be9 +size 210860 diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf_model.pkl b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf_model.pkl new file mode 100644 index 0000000000000000000000000000000000000000..824d3a6b8f0089fa34332b5df58d79fc823c45a0 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/arf_model.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f0c6d377b3ec6366c3db6126615eef83f073bad8f1a97545a0f9d1b152cfab86 +size 11138547 diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/gen_20260321_060705.log b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/gen_20260321_060705.log new file mode 100644 index 0000000000000000000000000000000000000000..0889d9c7a8d398e7f43b71cdd3ae6b35150c2cab --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/gen_20260321_060705.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b94428688e0d87a4e79348ce8c44a65dd4f9f2a937e0228319039cefed0f8da2 +size 1070 diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/gen_20260330_065245.log b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/gen_20260330_065245.log new file mode 100644 index 0000000000000000000000000000000000000000..40a7291bb281677f16dca4246dfbfd24e84a87d9 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/gen_20260330_065245.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ee66115d5a180d771ace2ac108942833e8db9e3599e775534d52f6476b13169e +size 1070 diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/input_snapshot.json b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/input_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..32baa0bbf5e085e8cda48ad55d01d1833bb112f0 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/input_snapshot.json @@ -0,0 +1,36 @@ +{ + "dataset_id": "c3", + "model": "arf", + "inputs": { + "train_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv", + "exists": true, + "size": 213326, + "sha256": "a1ee97b37e9abc68953c8bb4c99a5f8535c68b121c60de73d3e23fd4beb516f3" + }, + "val_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv", + "exists": true, + "size": 26805, + "sha256": "5f384eded9999ef705f6b10ae0d20ce981a1b92339d451e7feb3946e95fdcbd9" + }, + "test_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv", + "exists": true, + "size": 26871, + "sha256": "3f0c932764d3321b9bc1ae15932af108b80382f4c89248839c02f48e1d08ffad" + }, + "profile_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_profile.json", + "exists": true, + "size": 2635, + "sha256": "dfb01e28765bec4ac04cdb273987b23581194b35638d6450dac66f4525614335" + }, + "contract_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_contract_v1.json", + "exists": true, + "size": 2422, + "sha256": "a408b4f800a67fc20e9bc37e847c54de7ed6f608b93d440c3933dead213acfca" + } + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/public_gate/normalized_schema_snapshot.json b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/public_gate/normalized_schema_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..0922a1b5c96b82e247c8d185110e0243aae9da16 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/public_gate/normalized_schema_snapshot.json @@ -0,0 +1,68 @@ +{ + "dataset_id": "c3", + "target_column": "EI", + "task_type": "classification", + "columns": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ] +} \ No newline at end of file diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/public_gate/public_gate_report.json b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/public_gate/public_gate_report.json new file mode 100644 index 0000000000000000000000000000000000000000..587dc038d3d62e7428a64b5f92748c4509768e0f --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/public_gate/public_gate_report.json @@ -0,0 +1,37 @@ +{ + "dataset_id": "c3", + "status": "pass", + "checks": [ + { + "check_id": "PG001_csv_parse_ok", + "status": "pass" + }, + { + "check_id": "PG002_split_header_consistent", + "status": "pass" + }, + { + "check_id": "PG003_profile_header_match", + "status": "pass" + }, + { + "check_id": "PG004_missing_token_normalized", + "status": "pass" + }, + { + "check_id": "PG005_semantic_type_validated", + "status": "pass" + }, + { + "check_id": "PG006_target_defined_and_valid", + "status": "pass" + } + ], + "target_column": "EI", + "task_type": "classification", + "input_splits": { + "train": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv", + "val": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv", + "test": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv" + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/public_gate/staged_input_manifest.json b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/public_gate/staged_input_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..69001c2d34ed524a8566e60b266898cafadaa29c --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/public_gate/staged_input_manifest.json @@ -0,0 +1,73 @@ +{ + "dataset_id": "c3", + "target_column": "EI", + "task_type": "classification", + "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/staged/public/train.csv", + "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/staged/public/val.csv", + "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/staged/public/test.csv", + "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/staged/public/staged_features.json", + "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/public_gate/public_gate_report.json", + "column_schema": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ] +} \ No newline at end of file diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/runtime_result.json b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/runtime_result.json new file mode 100644 index 0000000000000000000000000000000000000000..82c8500cd16ba2317dc3f9fe8d1fea968ff94fe4 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/runtime_result.json @@ -0,0 +1,14 @@ +{ + "dataset_id": "c3", + "model": "arf", + "run_id": "arf-c3-20260321_060642", + "public_gate_status": "pass", + "adapter_ready_status": "pass", + "train_status": "skipped", + "generate_status": "success", + "reason_code": null, + "reason_detail": null, + "artifacts": { + "synthetic_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/arf-c3-2551-20260330_065245.csv" + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/arf/adapter_report.json b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/arf/adapter_report.json new file mode 100644 index 0000000000000000000000000000000000000000..d1c9cb055ce6e0db854d2a66ab5890d83cd809f9 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/arf/adapter_report.json @@ -0,0 +1,7 @@ +{ + "adapter_ready_status": "pass", + "adapter_fail_reason_code": null, + "adapter_fail_detail": null, + "adapter_transforms_applied": [], + "model_input_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/staged/arf/model_input_manifest.json" +} \ No newline at end of file diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/arf/adapter_transforms_applied.json b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/arf/adapter_transforms_applied.json new file mode 100644 index 0000000000000000000000000000000000000000..0637a088a01e8ddab3bf3fa98dbe804cbde1a0dc --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/arf/adapter_transforms_applied.json @@ -0,0 +1 @@ +[] \ No newline at end of file diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/arf/model_input_manifest.json b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/arf/model_input_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..abe10b7c95313a36ff7c7e174e3c4165e1952819 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/arf/model_input_manifest.json @@ -0,0 +1,75 @@ +{ + "dataset_id": "c3", + "model": "arf", + "target_column": "EI", + "task_type": "classification", + "column_schema": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ], + "public_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/public_gate/staged_input_manifest.json", + "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/staged/public/train.csv", + "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/staged/public/val.csv", + "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/staged/public/test.csv", + "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/staged/public/staged_features.json", + "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/arf/arf-c3-20260321_060642/public_gate/public_gate_report.json" +} \ No newline at end of file diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/staged_features.json b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/staged_features.json new file mode 100644 index 0000000000000000000000000000000000000000..657b01b6821a9e4997cc1065875671114d6defd0 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/staged_features.json @@ -0,0 +1,17 @@ +[ + { + "feature_name": "EI", + "data_type": "categorical", + "is_target": true + }, + { + "feature_name": "ATRINS-DONOR-521", + "data_type": "ID", + "is_target": false + }, + { + "feature_name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "data_type": "ID", + "is_target": false + } +] \ No newline at end of file diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/test.csv b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/test.csv new file mode 100644 index 0000000000000000000000000000000000000000..4d2e8892996799a3e69ee94e725d635fe92ca849 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/test.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:be0c5bad6c59669b0f6ea2a0c953d0bb03ce62ce625357b1b136eabc2de34d99 +size 26550 diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/train.csv b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/train.csv new file mode 100644 index 0000000000000000000000000000000000000000..158c54c0861baa492a6d65351885710b096aacfe --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/train.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f4b86543124166673bed177c1bb1e1806d04bbc8aaaa2c545b57c7b538aad82c +size 210774 diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/val.csv b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/val.csv new file mode 100644 index 0000000000000000000000000000000000000000..d9782ae547f984fd116294f15c027bd9df761099 --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/staged/public/val.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:db595b372b40df454d8ad8152b81c613321b79f80033c020da635825581237ea +size 26486 diff --git a/SynthData0523/main/c3/arf/arf-c3-20260321_060642/train_20260321_060642.log b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/train_20260321_060642.log new file mode 100644 index 0000000000000000000000000000000000000000..6b9017f7accb61050d5a7aacd44cbf00266681fb --- /dev/null +++ b/SynthData0523/main/c3/arf/arf-c3-20260321_060642/train_20260321_060642.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e790de250602115b85f0e47b9e614ec5a4f20ce9b614abaddd7d27b0320e94fe +size 443 diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/_bayesnet_generate.py b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/_bayesnet_generate.py new file mode 100644 index 0000000000000000000000000000000000000000..39245c49740dff4a3f0dcb9b76878fc5a8431013 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/_bayesnet_generate.py @@ -0,0 +1,43 @@ +import subprocess, sys, os + +pip_libs = "/pip_libs" +sys.path.insert(0, pip_libs) +os.environ["PYTHONPATH"] = pip_libs + os.pathsep + os.environ.get("PYTHONPATH", "") + +def _ensure_deps(): + try: + import synthcity + except ModuleNotFoundError: + print("[BayesNet] synthcity not found - installing to cache...") + subprocess.run( + [sys.executable, "-m", "pip", "install", + "--target", pip_libs, "synthcity==0.2.12", "numpy<2", "-q"], + check=True + ) + import shutil, glob + for pat in ["torch", "torch-*", "torchvision", "torchvision-*", + "torchvision.libs", "torchgen", "nvidia*", "triton*"]: + for p in glob.glob(os.path.join(pip_libs, pat)): + if os.path.isdir(p): shutil.rmtree(p) + else: os.remove(p) + if pip_libs not in sys.path: + sys.path.insert(0, pip_libs) + +_ensure_deps() + +import pickle, json as _json +with open("/work/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet_model.pkl", "rb") as f: + plugin = pickle.load(f) +syn = plugin.generate(count=2551).dataframe() + +# Restore zero-variance columns that were dropped during training +const_path = "/work/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet_model.pkl".replace("bayesnet_model.pkl", "const_cols.json") +if os.path.exists(const_path): + with open(const_path) as _f: + const_cols = _json.load(_f) + for col, val in const_cols.items(): + syn[col] = val + print(f"[BayesNet] Restored constant column '{col}' = {val}") + +syn.to_csv("/work/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet-c3-2551-20260330_065246.csv", index=False) +print(f"[BayesNet] Generated 2551 rows -> /work/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet-c3-2551-20260330_065246.csv") diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/_bayesnet_train.py b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/_bayesnet_train.py new file mode 100644 index 0000000000000000000000000000000000000000..143f86ae2ffb017973a3a1bd5083e0280cee50d5 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/_bayesnet_train.py @@ -0,0 +1,62 @@ +import subprocess, sys, os + +pip_libs = "/pip_libs" +sys.path.insert(0, pip_libs) +os.environ["PYTHONPATH"] = pip_libs + os.pathsep + os.environ.get("PYTHONPATH", "") + +def _ensure_deps(): + try: + import synthcity + except ModuleNotFoundError: + print("[BayesNet] synthcity not found - installing to cache (first run, may take minutes)...") + # Install synthcity with numpy<2 to avoid conflicts + subprocess.run( + [sys.executable, "-m", "pip", "install", + "--target", pip_libs, "synthcity==0.2.12", "numpy<2", "-q"], + check=True + ) + # Remove torch/torchvision from pip_libs to avoid shadowing system versions + import shutil, glob + for pat in ["torch", "torch-*", "torchvision", "torchvision-*", + "torchvision.libs", "torchgen", "nvidia*", "triton*"]: + for p in glob.glob(os.path.join(pip_libs, pat)): + if os.path.isdir(p): shutil.rmtree(p) + else: os.remove(p) + if pip_libs not in sys.path: + sys.path.insert(0, pip_libs) + +_ensure_deps() + +from synthcity.plugins import Plugins +import pickle +import pandas as pd +from synthcity.plugins.core.dataloader import GenericDataLoader + +df = pd.read_csv("/work/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/train.csv") +df = df.dropna(axis=1, how="all") + +# Drop zero-variance columns (only 1 unique value) to avoid +# synthcity encoder KeyError during generation +import json as _json +const_cols = {} +for col in list(df.columns): + nuniq = df[col].nunique() + if nuniq <= 1: + const_cols[col] = df[col].iloc[0] if len(df) > 0 else None + df = df.drop(columns=[col]) + print(f"[BayesNet] Dropped zero-variance column '{col}' (value={const_cols[col]})") + +# Save constant columns info so generate can restore them +const_path = "/work/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet_model.pkl".replace("bayesnet_model.pkl", "const_cols.json") +with open(const_path, "w") as _f: + _json.dump({k: str(v) for k, v in const_cols.items()}, _f) + +print(f"[BayesNet] Training on {len(df)} rows, {len(df.columns)} cols") + +loader = GenericDataLoader(df) +plugin = Plugins().get("bayesian_network") +plugin.fit(loader) + +with open("/work/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet_model.pkl", "wb") as f: + pickle.dump(plugin, f) +print(f"[BayesNet] Model saved -> /work/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet_model.pkl") diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet-c3-1000-20260321_060813.csv b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet-c3-1000-20260321_060813.csv new file mode 100644 index 0000000000000000000000000000000000000000..d6db7b506e8c878e771506a4c1a14ac3d87d8377 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet-c3-1000-20260321_060813.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:75b06e33516879a8a10124782a27524d093df766246a8fa0a254654f5308b872 +size 82612 diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet-c3-2551-20260330_065246.csv b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet-c3-2551-20260330_065246.csv new file mode 100644 index 0000000000000000000000000000000000000000..5b6e3e061217f0d73775217d7f1440bc4154ed44 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet-c3-2551-20260330_065246.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7d17b5c2f0fdcab4944050f7d2a1786a0df6adb087425b97ecbcac1b36e3b51b +size 210765 diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet_model.pkl b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet_model.pkl new file mode 100644 index 0000000000000000000000000000000000000000..cf430a7b6ee73fbe7f441679d3dc974912bf8127 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet_model.pkl @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a9875b9185d4a437070b37b93d56816b5952d743327bfaaa3ed08f16b273e6d8 +size 99624439 diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/const_cols.json b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/const_cols.json new file mode 100644 index 0000000000000000000000000000000000000000..9e26dfeeb6e641a33dae4961196235bdb965b21b --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/const_cols.json @@ -0,0 +1 @@ +{} \ No newline at end of file diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/gen_20260321_060813.log b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/gen_20260321_060813.log new file mode 100644 index 0000000000000000000000000000000000000000..91938b7dd011acc1afc77fc795d7132f8b69ad67 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/gen_20260321_060813.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:690723e1f8e61e037297a0de571262f666b8f56e4cc20f2358fb2b59f3e58697 +size 356 diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/gen_20260330_065246.log b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/gen_20260330_065246.log new file mode 100644 index 0000000000000000000000000000000000000000..634fb972e40f62948b13b0639bc3a9b27d517e99 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/gen_20260330_065246.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4c4d9067170c25efd90dee53f639ca6d15125b3259df43892278935cbf8ad589 +size 480 diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/input_snapshot.json b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/input_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..2427821c3e74b285e2045eaf86b3bab2bf4a88e8 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/input_snapshot.json @@ -0,0 +1,36 @@ +{ + "dataset_id": "c3", + "model": "bayesnet", + "inputs": { + "train_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv", + "exists": true, + "size": 213326, + "sha256": "a1ee97b37e9abc68953c8bb4c99a5f8535c68b121c60de73d3e23fd4beb516f3" + }, + "val_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv", + "exists": true, + "size": 26805, + "sha256": "5f384eded9999ef705f6b10ae0d20ce981a1b92339d451e7feb3946e95fdcbd9" + }, + "test_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv", + "exists": true, + "size": 26871, + "sha256": "3f0c932764d3321b9bc1ae15932af108b80382f4c89248839c02f48e1d08ffad" + }, + "profile_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_profile.json", + "exists": true, + "size": 2635, + "sha256": "dfb01e28765bec4ac04cdb273987b23581194b35638d6450dac66f4525614335" + }, + "contract_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_contract_v1.json", + "exists": true, + "size": 2422, + "sha256": "a408b4f800a67fc20e9bc37e847c54de7ed6f608b93d440c3933dead213acfca" + } + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/normalized_schema_snapshot.json b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/normalized_schema_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..0922a1b5c96b82e247c8d185110e0243aae9da16 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/normalized_schema_snapshot.json @@ -0,0 +1,68 @@ +{ + "dataset_id": "c3", + "target_column": "EI", + "task_type": "classification", + "columns": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ] +} \ No newline at end of file diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/public_gate_report.json b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/public_gate_report.json new file mode 100644 index 0000000000000000000000000000000000000000..587dc038d3d62e7428a64b5f92748c4509768e0f --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/public_gate_report.json @@ -0,0 +1,37 @@ +{ + "dataset_id": "c3", + "status": "pass", + "checks": [ + { + "check_id": "PG001_csv_parse_ok", + "status": "pass" + }, + { + "check_id": "PG002_split_header_consistent", + "status": "pass" + }, + { + "check_id": "PG003_profile_header_match", + "status": "pass" + }, + { + "check_id": "PG004_missing_token_normalized", + "status": "pass" + }, + { + "check_id": "PG005_semantic_type_validated", + "status": "pass" + }, + { + "check_id": "PG006_target_defined_and_valid", + "status": "pass" + } + ], + "target_column": "EI", + "task_type": "classification", + "input_splits": { + "train": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv", + "val": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv", + "test": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv" + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/staged_input_manifest.json b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/staged_input_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..e608294b35925ae46ded8b78371bd7e79449d9c1 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/staged_input_manifest.json @@ -0,0 +1,73 @@ +{ + "dataset_id": "c3", + "target_column": "EI", + "task_type": "classification", + "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/train.csv", + "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/val.csv", + "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/test.csv", + "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/staged_features.json", + "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/public_gate_report.json", + "column_schema": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ] +} \ No newline at end of file diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/runtime_result.json b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/runtime_result.json new file mode 100644 index 0000000000000000000000000000000000000000..7ea0865951026c3a14db7e2fd01446d67b9a09c4 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/runtime_result.json @@ -0,0 +1,14 @@ +{ + "dataset_id": "c3", + "model": "bayesnet", + "run_id": "bayesnet-c3-20260321_060730", + "public_gate_status": "pass", + "adapter_ready_status": "pass", + "train_status": "skipped", + "generate_status": "success", + "reason_code": null, + "reason_detail": null, + "artifacts": { + "synthetic_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/bayesnet-c3-2551-20260330_065246.csv" + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/bayesnet/adapter_report.json b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/bayesnet/adapter_report.json new file mode 100644 index 0000000000000000000000000000000000000000..b5a41ac6d9cbc93ba266952aed1643c9f6c526a3 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/bayesnet/adapter_report.json @@ -0,0 +1,7 @@ +{ + "adapter_ready_status": "pass", + "adapter_fail_reason_code": null, + "adapter_fail_detail": null, + "adapter_transforms_applied": [], + "model_input_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/staged/bayesnet/model_input_manifest.json" +} \ No newline at end of file diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/bayesnet/adapter_transforms_applied.json b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/bayesnet/adapter_transforms_applied.json new file mode 100644 index 0000000000000000000000000000000000000000..0637a088a01e8ddab3bf3fa98dbe804cbde1a0dc --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/bayesnet/adapter_transforms_applied.json @@ -0,0 +1 @@ +[] \ No newline at end of file diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/bayesnet/model_input_manifest.json b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/bayesnet/model_input_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..cbb8fcf8a65d2deeabe34f7572c318db3c29cb84 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/bayesnet/model_input_manifest.json @@ -0,0 +1,75 @@ +{ + "dataset_id": "c3", + "model": "bayesnet", + "target_column": "EI", + "task_type": "classification", + "column_schema": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ], + "public_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/staged_input_manifest.json", + "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/train.csv", + "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/val.csv", + "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/test.csv", + "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/staged_features.json", + "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-SpecializedModels/c3/bayesnet/bayesnet-c3-20260321_060730/public_gate/public_gate_report.json" +} \ No newline at end of file diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/staged_features.json b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/staged_features.json new file mode 100644 index 0000000000000000000000000000000000000000..657b01b6821a9e4997cc1065875671114d6defd0 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/staged_features.json @@ -0,0 +1,17 @@ +[ + { + "feature_name": "EI", + "data_type": "categorical", + "is_target": true + }, + { + "feature_name": "ATRINS-DONOR-521", + "data_type": "ID", + "is_target": false + }, + { + "feature_name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "data_type": "ID", + "is_target": false + } +] \ No newline at end of file diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/test.csv b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/test.csv new file mode 100644 index 0000000000000000000000000000000000000000..4d2e8892996799a3e69ee94e725d635fe92ca849 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/test.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:be0c5bad6c59669b0f6ea2a0c953d0bb03ce62ce625357b1b136eabc2de34d99 +size 26550 diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/train.csv b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/train.csv new file mode 100644 index 0000000000000000000000000000000000000000..158c54c0861baa492a6d65351885710b096aacfe --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/train.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f4b86543124166673bed177c1bb1e1806d04bbc8aaaa2c545b57c7b538aad82c +size 210774 diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/val.csv b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/val.csv new file mode 100644 index 0000000000000000000000000000000000000000..d9782ae547f984fd116294f15c027bd9df761099 --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/staged/public/val.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:db595b372b40df454d8ad8152b81c613321b79f80033c020da635825581237ea +size 26486 diff --git a/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/train_20260321_060730.log b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/train_20260321_060730.log new file mode 100644 index 0000000000000000000000000000000000000000..0ffefa275a535427931dfc18f465ea2dfed3c0bd --- /dev/null +++ b/SynthData0523/main/c3/bayesnet/bayesnet-c3-20260321_060730/train_20260321_060730.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e6229060cfb903667faf2e4c434cb7d3815c359bb9e8aa283b94a9d8a16877bd +size 1485 diff --git a/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/ctgan-c3-1000-20260322_064442.csv b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/ctgan-c3-1000-20260322_064442.csv new file mode 100644 index 0000000000000000000000000000000000000000..ebc7891e961b5028bee255a5422e7ce1945370ff --- /dev/null +++ b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/ctgan-c3-1000-20260322_064442.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f82f2d1608480473974117d5e54a73ef164dcf32a5931f32a0fa657da9a752c4 +size 82619 diff --git a/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/ctgan-c3-2551-20260330_065244.csv b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/ctgan-c3-2551-20260330_065244.csv new file mode 100644 index 0000000000000000000000000000000000000000..e04df8d8bb98e818452abf481ebad196c8891fa4 --- /dev/null +++ b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/ctgan-c3-2551-20260330_065244.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f4943622b6b43bd4e9e6fc8ba5b84d0943eabc6549d74d80c3a70b34a37e7468 +size 210834 diff --git a/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/ctgan_metadata.json b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/ctgan_metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9e9c9caf7825bef2c2d3cc9ab627b21029ecbb77 --- /dev/null +++ b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/ctgan_metadata.json @@ -0,0 +1,16 @@ +{ + "columns": [ + { + "name": "EI", + "type": "categorical" + }, + { + "name": "ATRINS-DONOR-521", + "type": "categorical" + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "categorical" + } + ] +} \ No newline at end of file diff --git a/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/gen_20260322_064442.log b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/gen_20260322_064442.log new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/gen_20260330_065244.log b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/gen_20260330_065244.log new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/input_snapshot.json b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/input_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..93715537fa1aefc751ac897bf39596b2e65fb66e --- /dev/null +++ b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/input_snapshot.json @@ -0,0 +1,36 @@ +{ + "dataset_id": "c3", + "model": "ctgan", + "inputs": { + "train_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv", + "exists": true, + "size": 213326, + "sha256": "a1ee97b37e9abc68953c8bb4c99a5f8535c68b121c60de73d3e23fd4beb516f3" + }, + "val_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv", + "exists": true, + "size": 26805, + "sha256": "5f384eded9999ef705f6b10ae0d20ce981a1b92339d451e7feb3946e95fdcbd9" + }, + "test_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv", + "exists": true, + "size": 26871, + "sha256": "3f0c932764d3321b9bc1ae15932af108b80382f4c89248839c02f48e1d08ffad" + }, + "profile_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_profile.json", + "exists": true, + "size": 2635, + "sha256": "dfb01e28765bec4ac04cdb273987b23581194b35638d6450dac66f4525614335" + }, + "contract_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_contract_v1.json", + "exists": true, + "size": 2422, + "sha256": "a408b4f800a67fc20e9bc37e847c54de7ed6f608b93d440c3933dead213acfca" + } + } +} \ No newline at end of file diff --git a/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/models_300epochs/ctgan_300epochs.pt b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/models_300epochs/ctgan_300epochs.pt new file mode 100644 index 0000000000000000000000000000000000000000..861ccf847dd9628e6339d027cfd43a1af122cc5a --- /dev/null +++ b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/models_300epochs/ctgan_300epochs.pt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4c6e6a2bcf559fb7d2f0016590e04a2f3e06e95c9d26ce6db441c6d02e8431c6 +size 123595683 diff --git a/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/models_300epochs/train_20260322_064041.log b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/models_300epochs/train_20260322_064041.log new file mode 100644 index 0000000000000000000000000000000000000000..003a71ee569a05cd159dac9d0ecaaafbbf00a274 --- /dev/null +++ b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/models_300epochs/train_20260322_064041.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e08d9cbaac7315c19cc6ffbb125e1699401614927b4f27c0faf3272174fc6602 +size 372 diff --git a/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/public_gate/normalized_schema_snapshot.json b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/public_gate/normalized_schema_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..0922a1b5c96b82e247c8d185110e0243aae9da16 --- /dev/null +++ b/SynthData0523/main/c3/ctgan/ctgan-c3-20260322_064041/public_gate/normalized_schema_snapshot.json @@ -0,0 +1,68 @@ +{ + "dataset_id": "c3", + "target_column": "EI", + "task_type": "classification", + "columns": [ + { + "name": "EI", + "role": "target", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.001176, + "example_values": [ + "EI", + "IE", + "N" + ] + } + }, + { + "name": "ATRINS-DONOR-521", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2541, + "unique_ratio": 0.99608, + "example_values": [ + "HUMH19-DONOR-2562", + "HUMMHCD8A-ACCEPTOR-733", + "HUMGCB1-ACCEPTOR-6344", + "HUMNEBB-NEG-241", + "HUMATP1A2-NEG-2101" + ] + } + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "role": "id", + "semantic_type": "id", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "keep_raw", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2426, + "unique_ratio": 0.951, + "example_values": [ + "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG", + "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT", + "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT", + "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA", + "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA" + ] + } + } + ] +} \ No newline at end of file