diff --git a/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/_tabbyflow_train.py b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/_tabbyflow_train.py new file mode 100644 index 0000000000000000000000000000000000000000..0138ff0d7ac2374910b353a7e06fae16455af5ae --- /dev/null +++ b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/_tabbyflow_train.py @@ -0,0 +1,22 @@ + +import os, shutil, subprocess, sys +root = r"/workspace/ef-vfm" +name = r"pipeline_m4" +src = r"/work/output-Benchmark-trainonly-v1/m4/tabbyflow/tabbyflow-m4-20260501_005424/tabular_bundle/pipeline_m4" +os.makedirs(os.path.join(root, "data", name), exist_ok=True) +dst_data = os.path.join(root, "data", name) +dst_syn = os.path.join(root, "synthetic", name) +shutil.rmtree(dst_data, ignore_errors=True) +shutil.copytree(src, dst_data) +os.makedirs(dst_syn, exist_ok=True) +for fn in ("real.csv", "test.csv", "val.csv"): + shutil.copy(os.path.join(src, fn), os.path.join(dst_syn, fn)) +os.chdir(root) +os.environ["PYTHONPATH"] = root + os.pathsep + os.environ.get("PYTHONPATH", "") +os.environ["EFVFM_SMOKE_STEPS"] = "500" +os.environ["EFVFM_ADAPTER_TRAIN"] = "1" +subprocess.check_call([ + sys.executable, "main.py", + "--dataname", name, "--mode", "train", "--gpu", "0", + "--no_wandb", "--exp_name", r"adapter_efvfm", +]) diff --git a/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/input_snapshot.json b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/input_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..a8e6cea3720f9c9515d0f6647d3de14221c42d45 --- /dev/null +++ b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/input_snapshot.json @@ -0,0 +1,36 @@ +{ + "dataset_id": "m4", + "model": "tabbyflow", + "inputs": { + "train_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/m4/m4-train.csv", + "exists": true, + "size": 92191, + "sha256": "396b9d409ca21bf4a4cd329bdf5b7796aa0ae6356fa8d89b8eb669b5880b81f1" + }, + "val_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/m4/m4-val.csv", + "exists": true, + "size": 11482, + "sha256": "ee3c247d02f56e1687d03c381e13125d6a3a2a411ac7f202ba8520a4be9f1784" + }, + "test_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/m4/m4-test.csv", + "exists": true, + "size": 11559, + "sha256": "cadb9941124001b8fa7cb1ebae43b70a9ca56294f4df4d3c2f22c164c41757d4" + }, + "profile_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/m4/m4-dataset_profile.json", + "exists": true, + "size": 3336, + "sha256": "83e2764810e4a0e8cdece3a28dbd9134b7c9df6f2e56953e46d024ad2c4e035f" + }, + "contract_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/m4/m4-dataset_contract_v1.json", + "exists": true, + "size": 3810, + "sha256": "c23641b258629a845b164099bd0132886f8f6d0100e990494e0f92540f8987d9" + } + } +} \ No newline at end of file diff --git a/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/public_gate/normalized_schema_snapshot.json b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/public_gate/normalized_schema_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..31ed9818686b11907df75e872e4ffbe010330880 --- /dev/null +++ b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/public_gate/normalized_schema_snapshot.json @@ -0,0 +1,147 @@ +{ + "dataset_id": "m4", + "target_column": "charges", + "task_type": "regression", + "columns": [ + { + "name": "age", + "role": "feature", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 47, + "unique_ratio": 0.0212, + "example_values": [ + "46", + "38", + "19", + "27", + "26" + ] + } + }, + { + "name": "sex", + "role": "feature", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2, + "unique_ratio": 0.000902, + "example_values": [ + "female", + "male" + ] + } + }, + { + "name": "bmi", + "role": "feature", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 538, + "unique_ratio": 0.24267, + "example_values": [ + "23.655", + "19.3", + "30.59", + "32.67", + "29.45" + ] + } + }, + { + "name": "children", + "role": "feature", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 6, + "unique_ratio": 0.002706, + "example_values": [ + "1", + "0", + "3", + "2", + "5" + ] + } + }, + { + "name": "smoker", + "role": "feature", + "semantic_type": "boolean", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2, + "unique_ratio": 0.000902, + "example_values": [ + "yes", + "no" + ] + } + }, + { + "name": "region", + "role": "feature", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 4, + "unique_ratio": 0.001804, + "example_values": [ + "northwest", + "southwest", + "southeast", + "northeast" + ] + } + }, + { + "name": "charges", + "role": "target", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 1281, + "unique_ratio": 0.577808, + "example_values": [ + "21677.28345", + "15820.699", + "1639.5631", + "2497.0383", + "2897.3235" + ] + } + } + ] +} \ No newline at end of file diff --git a/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/public_gate/public_gate_report.json b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/public_gate/public_gate_report.json new file mode 100644 index 0000000000000000000000000000000000000000..e7a25408e2574124629ea9437356551e4d6f4790 --- /dev/null +++ b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/public_gate/public_gate_report.json @@ -0,0 +1,37 @@ +{ + "dataset_id": "m4", + "status": "pass", + "checks": [ + { + "check_id": "PG001_csv_parse_ok", + "status": "pass" + }, + { + "check_id": "PG002_split_header_consistent", + "status": "pass" + }, + { + "check_id": "PG003_profile_header_match", + "status": "pass" + }, + { + "check_id": "PG004_missing_token_normalized", + "status": "pass" + }, + { + "check_id": "PG005_semantic_type_validated", + "status": "pass" + }, + { + "check_id": "PG006_target_defined_and_valid", + "status": "pass" + } + ], + "target_column": "charges", + "task_type": "regression", + "input_splits": { + "train": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/m4/m4-train.csv", + "val": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/m4/m4-val.csv", + "test": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/m4/m4-test.csv" + } +} \ No newline at end of file diff --git a/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/public_gate/staged_input_manifest.json b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/public_gate/staged_input_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..c06a59c1fd6df8c8ec1ab2b18af2cd957190c7df --- /dev/null +++ b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/public_gate/staged_input_manifest.json @@ -0,0 +1,152 @@ +{ + "dataset_id": "m4", + "target_column": "charges", + "task_type": "regression", + "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/public/train.csv", + "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/public/val.csv", + "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/public/test.csv", + "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/public/staged_features.json", + "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabbyflow/tabbyflow-m4-20260501_005424/public_gate/public_gate_report.json", + "column_schema": [ + { + "name": "age", + "role": "feature", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 47, + "unique_ratio": 0.0212, + "example_values": [ + "46", + "38", + "19", + "27", + "26" + ] + } + }, + { + "name": "sex", + "role": "feature", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2, + "unique_ratio": 0.000902, + "example_values": [ + "female", + "male" + ] + } + }, + { + "name": "bmi", + "role": "feature", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 538, + "unique_ratio": 0.24267, + "example_values": [ + "23.655", + "19.3", + "30.59", + "32.67", + "29.45" + ] + } + }, + { + "name": "children", + "role": "feature", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 6, + "unique_ratio": 0.002706, + "example_values": [ + "1", + "0", + "3", + "2", + "5" + ] + } + }, + { + "name": "smoker", + "role": "feature", + "semantic_type": "boolean", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2, + "unique_ratio": 0.000902, + "example_values": [ + "yes", + "no" + ] + } + }, + { + "name": "region", + "role": "feature", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 4, + "unique_ratio": 0.001804, + "example_values": [ + "northwest", + "southwest", + "southeast", + "northeast" + ] + } + }, + { + "name": "charges", + "role": "target", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 1281, + "unique_ratio": 0.577808, + "example_values": [ + "21677.28345", + "15820.699", + "1639.5631", + "2497.0383", + "2897.3235" + ] + } + } + ] +} \ No newline at end of file diff --git a/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/runtime_result.json b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/runtime_result.json new file mode 100644 index 0000000000000000000000000000000000000000..a30db0b7ba7e03487ce8d043eda161c50b32a292 --- /dev/null +++ b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/runtime_result.json @@ -0,0 +1,24 @@ +{ + "dataset_id": "m4", + "model": "tabbyflow", + "run_id": "tabbyflow-m4-20260501_005424", + "public_gate_status": "pass", + "adapter_ready_status": "pass", + "train_status": "fail", + "generate_status": "skipped", + "reason_code": "adapter_runtime_error", + "reason_detail": "Command '['docker', 'run', '--rm', '--init', '--cidfile', '/tmp/bench_docker_tabbyflow_aijd2i80/container.cid', '--gpus', 'device=2', '-e', 'WANDB_MODE=disabled', '-v', '/data/jialinzhang/SynthesizePipeline-server:/work', '-w', '/work', '-v', '/data/jialinzhang/synthetic_benchmark/third_party/ef-vfm:/workspace/ef-vfm', 'benchmark:tabdiff-tabbyflow-zjl', 'python', '/work/output-Benchmark-trainonly-v1/m4/tabbyflow/tabbyflow-m4-20260501_005424/_tabbyflow_train.py']' returned non-zero exit status 137.", + "artifacts": {}, + "timings": { + "train": { + "started_at": "2026-05-01T00:54:24", + "ended_at": "2026-05-01T01:00:36", + "duration_sec": 372.473 + }, + "generate": { + "started_at": null, + "ended_at": null, + "duration_sec": null + } + } +} \ No newline at end of file diff --git a/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/public/staged_features.json b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/public/staged_features.json new file mode 100644 index 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a/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/public/val.csv b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/public/val.csv new file mode 100644 index 0000000000000000000000000000000000000000..d78fe5ad1537c437ba9ac2629f2aa60a6c17e708 --- /dev/null +++ b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/public/val.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e55f5edbe7942ff01630de91a9c70dfbc6445eba76c7b970350364546b67c2d7 +size 11218 diff --git a/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/tabbyflow/adapter_report.json b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/tabbyflow/adapter_report.json new file mode 100644 index 0000000000000000000000000000000000000000..2da2c1cd562571e18f73e8e4c1d910dd554574a8 --- /dev/null +++ b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/tabbyflow/adapter_report.json @@ -0,0 +1,7 @@ +{ + "adapter_ready_status": "pass", + 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b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/tabbyflow/model_input_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..8d45afc14a3d1e2cf14a8a588459f3a3ba97a2c9 --- /dev/null +++ b/syntheticFail/m4/tabbyflow/tabbyflow-m4-20260501_005424/staged/tabbyflow/model_input_manifest.json @@ -0,0 +1,154 @@ +{ + "dataset_id": "m4", + "model": "tabbyflow", + "target_column": "charges", + "task_type": "regression", + "column_schema": [ + { + "name": "age", + "role": "feature", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 47, + "unique_ratio": 0.0212, + "example_values": [ + "46", + "38", + "19", + "27", + "26" + ] + } + }, + { + "name": "sex", + "role": "feature", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + 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sys, subprocess + +work_dir = "/work/output-Benchmark-trainonly-v1/m4/tabsyn/tabsyn-m4-20260505_093658" +dataname = "tabsyn_m4" +tabsyn_root = "/workspace/tabsyn" + +assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}" + +old = os.environ.get("PYTHONPATH", "") +os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "") +sys.path.insert(0, tabsyn_root) + +os.chdir(tabsyn_root) + +# Symlink data dir into TabSyn data/ +data_link = os.path.join(tabsyn_root, "data", dataname) +data_src = os.path.join(work_dir, "data", dataname) +os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True) +if os.path.exists(data_link): + os.remove(data_link) +os.symlink(data_src, data_link) + +env = os.environ.copy() +env.setdefault("TABSYN_RESUME", "0") +env.setdefault("TABSYN_VAE_BATCH_SIZE", "32") +env.setdefault("TABSYN_VAE_NUM_WORKERS", "0") +env.setdefault("TABSYN_VAE_EVAL_BATCH_SIZE", env["TABSYN_VAE_BATCH_SIZE"]) +env.setdefault("TABSYN_VAE_INFER_BATCH_SIZE", env["TABSYN_VAE_BATCH_SIZE"]) +env.setdefault("TABSYN_VAE_ENCODE_BATCH_SIZE", env["TABSYN_VAE_BATCH_SIZE"]) +# Safer defaults for wide tables on Docker: reduce shared-memory pressure in diffusion DataLoader. +env.setdefault("TABSYN_DIFFUSION_NUM_WORKERS", "0") +_te = None +if _te is not None: + env["TABSYN_VAE_EPOCHS"] = str(_te) + env["TABSYN_DIFFUSION_MAX_EPOCHS"] = str(max(_te + 1, 2)) + +# Data preprocessing is done on the host side (_prepare_data_dir) +# which creates .npy files, train/test CSVs, and info.json + +# Step 1: Train VAE (produces latent embeddings) +print(f"[TabSyn] Step 1/2: Training VAE in {tabsyn_root}, dataname={dataname}") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "train", + "--method", "vae", + "--gpu", "0"], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + print("[TabSyn] VAE training failed") + sys.exit(ret.returncode) + +# Step 2: Train diffusion model on latent space +print(f"[TabSyn] Step 2/2: Training diffusion model") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "train", + "--method", "tabsyn", + "--gpu", "0"], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + print("[TabSyn] Diffusion training failed") + sys.exit(ret.returncode) +print("[TabSyn] Training complete (VAE + Diffusion)") diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/data/tabsyn_m4/X_cat_test.npy b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/data/tabsyn_m4/X_cat_test.npy new file mode 100644 index 0000000000000000000000000000000000000000..35977ccea6d36736d37a5000108e57633f2bb227 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/data/tabsyn_m4/X_cat_test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d8893cf5626d7469e90c946b0f59fca148a445e109a27fa5a2acdd425b6bb7d2 +size 53336 diff --git 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+1,7 @@ +{ + "adapter_ready_status": "pass", + "adapter_fail_reason_code": null, + "adapter_fail_detail": null, + "adapter_transforms_applied": [], + "model_input_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabsyn/tabsyn-m4-20260505_093658/staged/tabsyn/model_input_manifest.json" +} \ No newline at end of file diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/staged/tabsyn/adapter_transforms_applied.json b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/staged/tabsyn/adapter_transforms_applied.json new file mode 100644 index 0000000000000000000000000000000000000000..0637a088a01e8ddab3bf3fa98dbe804cbde1a0dc --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/staged/tabsyn/adapter_transforms_applied.json @@ -0,0 +1 @@ +[] \ No newline at end of file diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/staged/tabsyn/model_input_manifest.json b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/staged/tabsyn/model_input_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..ad2e9a702070b19906645db8f9df0df7afad01ba --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/staged/tabsyn/model_input_manifest.json @@ -0,0 +1,154 @@ +{ + "dataset_id": "m4", + "model": "tabsyn", + "target_column": "charges", + "task_type": "regression", + "column_schema": [ + { + "name": "age", + "role": "feature", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 47, + "unique_ratio": 0.0212, + "example_values": [ + "46", + "38", + "19", + "27", + "26" + ] + } + }, + { + "name": "sex", + "role": "feature", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2, + "unique_ratio": 0.000902, + "example_values": [ + "female", + "male" + ] + } + }, + { + "name": "bmi", + "role": "feature", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 538, + "unique_ratio": 0.24267, + "example_values": [ + "23.655", + "19.3", + "30.59", + "32.67", + "29.45" + ] + } + }, + { + "name": "children", + "role": "feature", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 6, + "unique_ratio": 0.002706, + "example_values": [ + "1", + "0", + "3", + "2", + "5" + ] + } + }, + { + "name": "smoker", + "role": "feature", + "semantic_type": "boolean", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 2, + "unique_ratio": 0.000902, + "example_values": [ + "yes", + "no" + ] + } + }, + { + "name": "region", + "role": "feature", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 4, + "unique_ratio": 0.001804, + "example_values": [ + "northwest", + "southwest", + "southeast", + "northeast" + ] + } + }, + { + "name": "charges", + "role": "target", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 1281, + "unique_ratio": 0.577808, + "example_values": [ + "21677.28345", + "15820.699", + "1639.5631", + "2497.0383", + "2897.3235" + ] + } + } + ], + "public_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabsyn/tabsyn-m4-20260505_093658/public_gate/staged_input_manifest.json", + "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabsyn/tabsyn-m4-20260505_093658/staged/public/train.csv", + "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabsyn/tabsyn-m4-20260505_093658/staged/public/val.csv", + "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabsyn/tabsyn-m4-20260505_093658/staged/public/test.csv", + "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabsyn/tabsyn-m4-20260505_093658/staged/public/staged_features.json", + "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabsyn/tabsyn-m4-20260505_093658/public_gate/public_gate_report.json" +} \ No newline at end of file diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/synthetic/tabsyn_m4/real.csv b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/synthetic/tabsyn_m4/real.csv new file mode 100644 index 0000000000000000000000000000000000000000..152c9a200d3e5ce590ed1621c80749a36fc97e13 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/synthetic/tabsyn_m4/real.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:67f64f75063e2f8d838d7f7040ebc12f8c46df4dc54450874b851786224ba875 +size 60802 diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/synthetic/tabsyn_m4/test.csv b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/synthetic/tabsyn_m4/test.csv new file mode 100644 index 0000000000000000000000000000000000000000..152c9a200d3e5ce590ed1621c80749a36fc97e13 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/synthetic/tabsyn_m4/test.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:67f64f75063e2f8d838d7f7040ebc12f8c46df4dc54450874b851786224ba875 +size 60802 diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/train_20260505_093658.log b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/train_20260505_093658.log new file mode 100644 index 0000000000000000000000000000000000000000..00ff3bf324f0e9ea2fbb60ec7195fda22dafcf74 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_093658/train_20260505_093658.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c266458df4fd5eb022b6e814deddb73436073894cfdc22ec8dbfc8c6958102e1 +size 598006 diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/_tabsyn_train.py b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/_tabsyn_train.py new file mode 100644 index 0000000000000000000000000000000000000000..1b4df7122623c2fefdfd4923c3a3f9bcbe9d4b11 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/_tabsyn_train.py @@ -0,0 +1,69 @@ +import os, sys, subprocess + +work_dir = "/work/output-Benchmark-trainonly-v1/m4/tabsyn/tabsyn-m4-20260505_182427" +dataname = "tabsyn_m4_tabsyn_m4_20260505_182427" +tabsyn_root = "/workspace/tabsyn" + +assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}" + +old = os.environ.get("PYTHONPATH", "") +os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "") +sys.path.insert(0, tabsyn_root) + +os.chdir(tabsyn_root) + +# Symlink data dir into TabSyn data/ +data_link = os.path.join(tabsyn_root, "data", dataname) +data_src = os.path.join(work_dir, "data", dataname) +os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True) +if os.path.exists(data_link): + os.remove(data_link) +os.symlink(data_src, data_link) + +env = os.environ.copy() +env.setdefault("TABSYN_RESUME", "0") +env.setdefault("TABSYN_VAE_BATCH_SIZE", "32") +env.setdefault("TABSYN_VAE_NUM_WORKERS", "0") +env.setdefault("TABSYN_VAE_EVAL_BATCH_SIZE", env["TABSYN_VAE_BATCH_SIZE"]) +env.setdefault("TABSYN_VAE_INFER_BATCH_SIZE", env["TABSYN_VAE_BATCH_SIZE"]) +env.setdefault("TABSYN_VAE_ENCODE_BATCH_SIZE", env["TABSYN_VAE_BATCH_SIZE"]) +# Safer defaults for wide tables on Docker: reduce shared-memory pressure in diffusion DataLoader. +env.setdefault("TABSYN_DIFFUSION_NUM_WORKERS", "0") +_te = None +if _te is not None: + env["TABSYN_VAE_EPOCHS"] = str(_te) + env["TABSYN_DIFFUSION_MAX_EPOCHS"] = str(max(_te + 1, 2)) + +# Data preprocessing is done on the host side (_prepare_data_dir) +# which creates .npy files, train/test CSVs, and info.json + +# Step 1: Train VAE (produces latent embeddings) +print(f"[TabSyn] Step 1/2: Training VAE in {tabsyn_root}, dataname={dataname}") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "train", + "--method", "vae", + "--gpu", "0"], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + print("[TabSyn] VAE training failed") + sys.exit(ret.returncode) + +# Step 2: Train diffusion model on latent space +print(f"[TabSyn] Step 2/2: Training diffusion model") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "train", + "--method", "tabsyn", + "--gpu", "0"], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + print("[TabSyn] Diffusion training failed") + sys.exit(ret.returncode) +print("[TabSyn] Training complete (VAE + Diffusion)") diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_cat_test.npy b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_cat_test.npy new file mode 100644 index 0000000000000000000000000000000000000000..35977ccea6d36736d37a5000108e57633f2bb227 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_cat_test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d8893cf5626d7469e90c946b0f59fca148a445e109a27fa5a2acdd425b6bb7d2 +size 53336 diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_cat_train.npy b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_cat_train.npy new file mode 100644 index 0000000000000000000000000000000000000000..35977ccea6d36736d37a5000108e57633f2bb227 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_cat_train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d8893cf5626d7469e90c946b0f59fca148a445e109a27fa5a2acdd425b6bb7d2 +size 53336 diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_num_test.npy b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_num_test.npy new file mode 100644 index 0000000000000000000000000000000000000000..dc149960a879e21fd1aeed7de2419851175627e7 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_num_test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4a21bd2fd5a226c07d543ddf78616a8edb2d52b51097fc7a5df5b05612267af8 +size 26732 diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_num_train.npy b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_num_train.npy new file mode 100644 index 0000000000000000000000000000000000000000..dc149960a879e21fd1aeed7de2419851175627e7 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/X_num_train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4a21bd2fd5a226c07d543ddf78616a8edb2d52b51097fc7a5df5b05612267af8 +size 26732 diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/info.json b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/info.json new file mode 100644 index 0000000000000000000000000000000000000000..a66fa24705effb185391aa0ee2ebffeb4107d65d --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/info.json @@ -0,0 +1,91 @@ +{ + "name": "tabsyn_m4_tabsyn_m4_20260505_182427", + "task_type": "regression", + "n_num_features": 3, + "n_cat_features": 3, + "train_size": 2217, + "num_col_idx": [ + 0, + 2, + 3 + ], + "cat_col_idx": [ + 1, + 4, + 5 + ], + "target_col_idx": [ + 6 + ], + "column_names": [ + "age", + "sex", + "bmi", + "children", + "smoker", + "region", + "charges" + ], + "train_num": 2217, + "test_num": 2217, + "header": 0, + "file_type": "csv", + "data_path": "data/tabsyn_m4_tabsyn_m4_20260505_182427/train.csv", + "test_path": null, + "idx_mapping": { + "0": 0, + "1": 3, + "2": 1, + "3": 2, + "4": 4, + "5": 5, + "6": 6 + }, + "inverse_idx_mapping": { + 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a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/y_test.npy b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/y_test.npy new file mode 100644 index 0000000000000000000000000000000000000000..c1d23d8e35b403e2d772e5544af9d68ff32a8ea0 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/y_test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4d6e4ad93beee28740cc25ee808a180c01fa94a053f79ff383504888f2d8f39e +size 17864 diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/y_train.npy b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/y_train.npy new file mode 100644 index 0000000000000000000000000000000000000000..c1d23d8e35b403e2d772e5544af9d68ff32a8ea0 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/data/tabsyn_m4_tabsyn_m4_20260505_182427/y_train.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4d6e4ad93beee28740cc25ee808a180c01fa94a053f79ff383504888f2d8f39e +size 17864 diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/input_snapshot.json b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/input_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..21fe15b6e6863f7441ca4017d82218a03e3a90b4 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/input_snapshot.json @@ -0,0 +1,36 @@ +{ + "dataset_id": "m4", + "model": "tabsyn", + "inputs": { + "train_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/m4/m4-train.csv", + "exists": true, + "size": 92191, + "sha256": "396b9d409ca21bf4a4cd329bdf5b7796aa0ae6356fa8d89b8eb669b5880b81f1" + }, + "val_csv": { + "path": 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a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/public_gate/normalized_schema_snapshot.json b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/public_gate/normalized_schema_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..31ed9818686b11907df75e872e4ffbe010330880 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/public_gate/normalized_schema_snapshot.json @@ -0,0 +1,147 @@ +{ + "dataset_id": "m4", + "target_column": "charges", + "task_type": "regression", + "columns": [ + { + "name": "age", + "role": "feature", + "semantic_type": "numeric", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "median", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 47, + "unique_ratio": 0.0212, + "example_values": [ + "46", + "38", + "19", + "27", + "26" + ] + } + }, + { + "name": "sex", + "role": "feature", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + 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diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/public_gate/public_gate_report.json b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/public_gate/public_gate_report.json new file mode 100644 index 0000000000000000000000000000000000000000..e7a25408e2574124629ea9437356551e4d6f4790 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/public_gate/public_gate_report.json @@ -0,0 +1,37 @@ +{ + "dataset_id": "m4", + "status": "pass", + "checks": [ + { + "check_id": "PG001_csv_parse_ok", + "status": "pass" + }, + { + "check_id": "PG002_split_header_consistent", + "status": "pass" + }, + { + "check_id": "PG003_profile_header_match", + "status": "pass" + }, + { + "check_id": "PG004_missing_token_normalized", + "status": "pass" + }, + { + "check_id": "PG005_semantic_type_validated", + "status": "pass" + }, + { + "check_id": "PG006_target_defined_and_valid", + "status": "pass" + } + ], + "target_column": "charges", + "task_type": "regression", + "input_splits": { 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"15820.699", + "1639.5631", + "2497.0383", + "2897.3235" + ] + } + } + ] +} \ No newline at end of file diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/run_config.json b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/run_config.json new file mode 100644 index 0000000000000000000000000000000000000000..430c87d3af89521f722801295021435a0e7a8210 --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/run_config.json @@ -0,0 +1,49 @@ +{ + "schema_version": 1, + "recorded_at": "2026-05-05T18:24:27", + "dataset_id": "m4", + "model": "tabsyn", + "work_dir": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/m4/tabsyn/tabsyn-m4-20260505_182427", + "dataset_source_requested": "new", + "dataset_source_resolved": "new", + "cli_args": { + "model": "tabsyn", + "dataset": "m4", + "dataset_source": "new", + "train": true, + "generate": true, + "num_rows": 0, + "epochs": null, + "output_dir": null, + "model_dir": null, + "work_dir": null, + 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"target_column": "charges", + "task_type": "regression" + }, + "env_overrides": { + "BENCHMARK_TABSYN_GPUS": "device=3", + "TABSYN_DIFFUSION_MAX_EPOCHS": "5", + "TABSYN_DIFFUSION_NUM_WORKERS": "0", + "TABSYN_RESUME": "0", + "TABSYN_VAE_BATCH_SIZE": "128", + "TABSYN_VAE_ENCODE_BATCH_SIZE": "256", + "TABSYN_VAE_EPOCHS": "5", + "TABSYN_VAE_EVAL_BATCH_SIZE": "256", + "TABSYN_VAE_INFER_BATCH_SIZE": "256", + "TABSYN_VAE_NUM_WORKERS": "0" + } +} \ No newline at end of file diff --git a/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/runtime_result.json b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/runtime_result.json new file mode 100644 index 0000000000000000000000000000000000000000..a2ce3a6c0eb301be3e8b71d84250c2162d9baf0c --- /dev/null +++ b/syntheticFail/m4/tabsyn/tabsyn-m4-20260505_182427/runtime_result.json @@ -0,0 +1,24 @@ +{ + "dataset_id": "m4", + "model": "tabsyn", + "run_id": "tabsyn-m4-20260505_182427", + "public_gate_status": "pass", + "adapter_ready_status": "pass", + "train_status": "fail", + "generate_status": "skipped", + "reason_code": "adapter_runtime_error", + "reason_detail": "Command '['docker', 'run', '--rm', '--init', '--user', '1005:1005', '-e', 'HOME=/work/.home', '--cidfile', '/tmp/bench_docker_tabsyn_7xcuj1c0/container.cid', '--gpus', 'device=3', '-e', 'TABSYN_VAE_BATCH_SIZE=128', '-e', 'TABSYN_DIFFUSION_MAX_EPOCHS=5', '-e', 'TABSYN_VAE_NUM_WORKERS=0', '-e', 'TABSYN_VAE_EVAL_BATCH_SIZE=256', '-e', 'TABSYN_RESUME=0', '-e', 'TABSYN_VAE_INFER_BATCH_SIZE=256', '-e', 'TABSYN_VAE_ENCODE_BATCH_SIZE=256', '-e', 'TABSYN_DIFFUSION_NUM_WORKERS=0', '-e', 'TABSYN_VAE_EPOCHS=5', '-v', '/data/jialinzhang/SynthesizePipeline-server:/work', '-w', '/work', '-v', '/data/jialinzhang/synthetic_benchmark/tabsyn:/workspace/tabsyn', 'benchmark:tabsyn-zjl', 'python', '/work/output-Benchmark-trainonly-v1/m4/tabsyn/tabsyn-m4-20260505_182427/_tabsyn_train.py']' returned non-zero exit status 1.", + "artifacts": {}, + "timings": { + "train": { + "started_at": 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