Add syntheticFail c3

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/_fd_X_host.npy

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bd588415ac2499dda1e1206d8e0587a0884f07d26cedd47c87271646925b1783
+size 30740

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/_fd_meta_host.json

@@ -0,0 +1 @@
+{"column_names": ["ATRINS-DONOR-521", "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", "EI"], "cat_indexes": [0, 1]}

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/_fd_train.py

@@ -0,0 +1,36 @@
+
+import os, shutil, json
+with open('/tmp/pgrep', 'w') as _f:
+    _f.write("#!/usr/bin/env python3\n")
+    _f.write("import subprocess, sys\n")
+    _f.write("ppid = sys.argv[-1]\n")
+    _f.write("out = subprocess.check_output(['ps', '-o', 'pid=', '--ppid', str(ppid)], text=True)\n")
+    _f.write("print(out, end='')\n")
+os.chmod('/tmp/pgrep', 0o755)
+os.environ['PATH'] = '/tmp:' + os.environ.get('PATH', '')
+shutil.copy(r'/work/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/_fd_X_host.npy', '/tmp/fd_X.npy')
+with open(r'/work/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/_fd_meta_host.json') as f:
+    open('/tmp/fd_meta.json','w').write(f.read())
+
+import numpy as np, joblib, json, os
+from ForestDiffusion import ForestDiffusionModel
+X = np.load("/tmp/fd_X.npy")
+with open("/tmp/fd_meta.json") as f:
+    meta = json.load(f)
+cat_indexes = meta["cat_indexes"]
+print(
+    "[ForestDiffusion] train config: "
+    f"rows={X.shape[0]} cols={X.shape[1]} n_t=10 "
+    f"n_estimators=20 duplicate_K=5 n_jobs=1 "
+    f"max_depth=4 xgb_verbosity=1",
+    flush=True,
+)
+m = ForestDiffusionModel(
+    X, n_t=10, n_estimators=20, duplicate_K=5, n_jobs=1,
+    model="xgboost", max_depth=4, tree_method="hist", cat_indexes=cat_indexes,
+    verbosity=1,
+)
+joblib.dump((m, meta), "/tmp/fd_model.joblib")
+print("ForestDiffusion train OK")
+
+shutil.copy('/tmp/fd_model.joblib', r'/work/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/forestdiffusion_model.joblib')

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/input_snapshot.json

@@ -0,0 +1,36 @@
+{
+  "dataset_id": "c3",
+  "model": "forestdiffusion",
+  "inputs": {
+    "train_csv": {
+      "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv",
+      "exists": true,
+      "size": 213326,
+      "sha256": "a1ee97b37e9abc68953c8bb4c99a5f8535c68b121c60de73d3e23fd4beb516f3"
+    },
+    "val_csv": {
+      "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv",
+      "exists": true,
+      "size": 26805,
+      "sha256": "5f384eded9999ef705f6b10ae0d20ce981a1b92339d451e7feb3946e95fdcbd9"
+    },
+    "test_csv": {
+      "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv",
+      "exists": true,
+      "size": 26871,
+      "sha256": "3f0c932764d3321b9bc1ae15932af108b80382f4c89248839c02f48e1d08ffad"
+    },
+    "profile_json": {
+      "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_profile.json",
+      "exists": true,
+      "size": 2635,
+      "sha256": "dfb01e28765bec4ac04cdb273987b23581194b35638d6450dac66f4525614335"
+    },
+    "contract_json": {
+      "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c3/c3-dataset_contract_v1.json",
+      "exists": true,
+      "size": 2422,
+      "sha256": "a408b4f800a67fc20e9bc37e847c54de7ed6f608b93d440c3933dead213acfca"
+    }
+  }
+}

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/public_gate/normalized_schema_snapshot.json

@@ -0,0 +1,68 @@
+{
+  "dataset_id": "c3",
+  "target_column": "EI",
+  "task_type": "classification",
+  "columns": [
+    {
+      "name": "EI",
+      "role": "target",
+      "semantic_type": "categorical",
+      "nullable": false,
+      "missing_tokens": [],
+      "parse_format": null,
+      "impute_strategy": "mode",
+      "profile_stats": {
+        "missing_rate": 0.0,
+        "unique_count": 3,
+        "unique_ratio": 0.001176,
+        "example_values": [
+          "EI",
+          "IE",
+          "N"
+        ]
+      }
+    },
+    {
+      "name": "ATRINS-DONOR-521",
+      "role": "id",
+      "semantic_type": "id",
+      "nullable": false,
+      "missing_tokens": [],
+      "parse_format": null,
+      "impute_strategy": "keep_raw",
+      "profile_stats": {
+        "missing_rate": 0.0,
+        "unique_count": 2541,
+        "unique_ratio": 0.99608,
+        "example_values": [
+          "HUMH19-DONOR-2562",
+          "HUMMHCD8A-ACCEPTOR-733",
+          "HUMGCB1-ACCEPTOR-6344",
+          "HUMNEBB-NEG-241",
+          "HUMATP1A2-NEG-2101"
+        ]
+      }
+    },
+    {
+      "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
+      "role": "id",
+      "semantic_type": "id",
+      "nullable": false,
+      "missing_tokens": [],
+      "parse_format": null,
+      "impute_strategy": "keep_raw",
+      "profile_stats": {
+        "missing_rate": 0.0,
+        "unique_count": 2426,
+        "unique_ratio": 0.951,
+        "example_values": [
+          "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG",
+          "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT",
+          "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT",
+          "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA",
+          "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA"
+        ]
+      }
+    }
+  ]
+}

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/public_gate/public_gate_report.json

@@ -0,0 +1,37 @@
+{
+  "dataset_id": "c3",
+  "status": "pass",
+  "checks": [
+    {
+      "check_id": "PG001_csv_parse_ok",
+      "status": "pass"
+    },
+    {
+      "check_id": "PG002_split_header_consistent",
+      "status": "pass"
+    },
+    {
+      "check_id": "PG003_profile_header_match",
+      "status": "pass"
+    },
+    {
+      "check_id": "PG004_missing_token_normalized",
+      "status": "pass"
+    },
+    {
+      "check_id": "PG005_semantic_type_validated",
+      "status": "pass"
+    },
+    {
+      "check_id": "PG006_target_defined_and_valid",
+      "status": "pass"
+    }
+  ],
+  "target_column": "EI",
+  "task_type": "classification",
+  "input_splits": {
+    "train": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-train.csv",
+    "val": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-val.csv",
+    "test": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c3/c3-test.csv"
+  }
+}

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/public_gate/staged_input_manifest.json

@@ -0,0 +1,73 @@
+{
+  "dataset_id": "c3",
+  "target_column": "EI",
+  "task_type": "classification",
+  "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/train.csv",
+  "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/val.csv",
+  "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/test.csv",
+  "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/staged_features.json",
+  "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/public_gate/public_gate_report.json",
+  "column_schema": [
+    {
+      "name": "EI",
+      "role": "target",
+      "semantic_type": "categorical",
+      "nullable": false,
+      "missing_tokens": [],
+      "parse_format": null,
+      "impute_strategy": "mode",
+      "profile_stats": {
+        "missing_rate": 0.0,
+        "unique_count": 3,
+        "unique_ratio": 0.001176,
+        "example_values": [
+          "EI",
+          "IE",
+          "N"
+        ]
+      }
+    },
+    {
+      "name": "ATRINS-DONOR-521",
+      "role": "id",
+      "semantic_type": "id",
+      "nullable": false,
+      "missing_tokens": [],
+      "parse_format": null,
+      "impute_strategy": "keep_raw",
+      "profile_stats": {
+        "missing_rate": 0.0,
+        "unique_count": 2541,
+        "unique_ratio": 0.99608,
+        "example_values": [
+          "HUMH19-DONOR-2562",
+          "HUMMHCD8A-ACCEPTOR-733",
+          "HUMGCB1-ACCEPTOR-6344",
+          "HUMNEBB-NEG-241",
+          "HUMATP1A2-NEG-2101"
+        ]
+      }
+    },
+    {
+      "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
+      "role": "id",
+      "semantic_type": "id",
+      "nullable": false,
+      "missing_tokens": [],
+      "parse_format": null,
+      "impute_strategy": "keep_raw",
+      "profile_stats": {
+        "missing_rate": 0.0,
+        "unique_count": 2426,
+        "unique_ratio": 0.951,
+        "example_values": [
+          "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG",
+          "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT",
+          "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT",
+          "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA",
+          "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA"
+        ]
+      }
+    }
+  ]
+}

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/runtime_result.json

@@ -0,0 +1,24 @@
+{
+  "dataset_id": "c3",
+  "model": "forestdiffusion",
+  "run_id": "forest-c3-20260504_072331",
+  "public_gate_status": "pass",
+  "adapter_ready_status": "pass",
+  "train_status": "fail",
+  "generate_status": "skipped",
+  "reason_code": "adapter_runtime_error",
+  "reason_detail": "Command '['docker', 'run', '--rm', '--init', '--cidfile', '/tmp/bench_docker_forestdiffusion_qnmqr0di/container.cid', '-e', 'PYTHONUNBUFFERED=1', '-v', '/data/jialinzhang/SynthesizePipeline-server:/work', '-w', '/work', '-v', '/data/jialinzhang/synthetic_benchmark/third_party/ForestDiffusion/Python-Package/base-ForestDiffusion:/workspace/base-ForestDiffusion', 'benchmark:forestdiffusion-zjl', 'python', '/work/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/_fd_train.py']' returned non-zero exit status 137.",
+  "artifacts": {},
+  "timings": {
+    "train": {
+      "started_at": "2026-05-04T07:23:31",
+      "ended_at": "2026-05-04T07:24:26",
+      "duration_sec": 54.2
+    },
+    "generate": {
+      "started_at": null,
+      "ended_at": null,
+      "duration_sec": null
+    }
+  }
+}

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/staged/forestdiffusion/adapter_report.json

@@ -0,0 +1,7 @@
+{
+  "adapter_ready_status": "pass",
+  "adapter_fail_reason_code": null,
+  "adapter_fail_detail": null,
+  "adapter_transforms_applied": [],
+  "model_input_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/staged/forestdiffusion/model_input_manifest.json"
+}

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/staged/forestdiffusion/adapter_transforms_applied.json

@@ -0,0 +1 @@
+[]

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/staged/forestdiffusion/model_input_manifest.json

@@ -0,0 +1,75 @@
+{
+  "dataset_id": "c3",
+  "model": "forestdiffusion",
+  "target_column": "EI",
+  "task_type": "classification",
+  "column_schema": [
+    {
+      "name": "EI",
+      "role": "target",
+      "semantic_type": "categorical",
+      "nullable": false,
+      "missing_tokens": [],
+      "parse_format": null,
+      "impute_strategy": "mode",
+      "profile_stats": {
+        "missing_rate": 0.0,
+        "unique_count": 3,
+        "unique_ratio": 0.001176,
+        "example_values": [
+          "EI",
+          "IE",
+          "N"
+        ]
+      }
+    },
+    {
+      "name": "ATRINS-DONOR-521",
+      "role": "id",
+      "semantic_type": "id",
+      "nullable": false,
+      "missing_tokens": [],
+      "parse_format": null,
+      "impute_strategy": "keep_raw",
+      "profile_stats": {
+        "missing_rate": 0.0,
+        "unique_count": 2541,
+        "unique_ratio": 0.99608,
+        "example_values": [
+          "HUMH19-DONOR-2562",
+          "HUMMHCD8A-ACCEPTOR-733",
+          "HUMGCB1-ACCEPTOR-6344",
+          "HUMNEBB-NEG-241",
+          "HUMATP1A2-NEG-2101"
+        ]
+      }
+    },
+    {
+      "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
+      "role": "id",
+      "semantic_type": "id",
+      "nullable": false,
+      "missing_tokens": [],
+      "parse_format": null,
+      "impute_strategy": "keep_raw",
+      "profile_stats": {
+        "missing_rate": 0.0,
+        "unique_count": 2426,
+        "unique_ratio": 0.951,
+        "example_values": [
+          "TCTGGGCTCCCAGAACCCACAACATGAAAGGTGAGGGNCTTCCTGCCACACTTGGGGTGG",
+          "TTGCTCAGCCTCGCTGCTTGCCTCCTGCAGACGCCGCCAGGCCGAGCCAGTTCCGGGTGT",
+          "GGGACTCTGACCATCTGTTCCCACATTCAGCAAGTTCATTCCTGAGGGCTCCCAGAGAGT",
+          "GCCAACTACAGGAACGTGATCCATACCTACAACATGCTTCCTGATGCCATGAGCTTTGAA",
+          "GGGAGTCCTAGCCTGAGAGGCTGGGGGTCCATTTTGAGGTTAGAGAGGGGCAGTAGAGCA"
+        ]
+      }
+    }
+  ],
+  "public_manifest": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/public_gate/staged_input_manifest.json",
+  "train_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/train.csv",
+  "val_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/val.csv",
+  "test_csv": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/test.csv",
+  "features_json": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/staged_features.json",
+  "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/output-Benchmark-trainonly-v1/c3/forestdiffusion/forest-c3-20260504_072331/public_gate/public_gate_report.json"
+}

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/staged_features.json

@@ -0,0 +1,17 @@
+[
+  {
+    "feature_name": "EI",
+    "data_type": "categorical",
+    "is_target": true
+  },
+  {
+    "feature_name": "ATRINS-DONOR-521",
+    "data_type": "ID",
+    "is_target": false
+  },
+  {
+    "feature_name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG",
+    "data_type": "ID",
+    "is_target": false
+  }
+]

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/test.csv

@@ -0,0 +1,3 @@
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+oid sha256:be0c5bad6c59669b0f6ea2a0c953d0bb03ce62ce625357b1b136eabc2de34d99
+size 26550

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/train.csv

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+size 210774

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/staged/public/val.csv

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+oid sha256:db595b372b40df454d8ad8152b81c613321b79f80033c020da635825581237ea
+size 26486

syntheticFail/c3/forestdiffusion/forest-c3-20260504_072331/train_20260504_072332.log

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+size 407