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b/SynthData0523/main/c7/tabpfgen/tabpfgen-c7-20260429_061314/_tabpfgen_generate.py new file mode 100644 index 0000000000000000000000000000000000000000..08b47351c3e118ba3a59239e6f1ed473844988aa --- /dev/null +++ b/SynthData0523/main/c7/tabpfgen/tabpfgen-c7-20260429_061314/_tabpfgen_generate.py @@ -0,0 +1,100 @@ +import os +import numpy as np +import pandas as pd +import json +from tabpfgen import TabPFGen + +df = pd.read_csv("/work/output-Benchmark-trainonly-v1/c7/tabpfgen/tabpfgen-c7-20260429_061314/staged/public/train.csv") +target_col = "class" + +target_missing = df[target_col].isna() +if target_missing.any(): + dropped = int(target_missing.sum()) + df = df.loc[~target_missing].copy() + print( + f"[TabPFGen] Dropped {dropped} rows with missing target '{target_col}'" + ) +if df.empty: + raise ValueError( + f"[TabPFGen] No rows remain after dropping missing target '{target_col}'" + ) + +feature_cols = [c for c in df.columns if c != target_col] + +cat_encodings = {} +for col in feature_cols: + if df[col].dtype == object or str(df[col].dtype) == 'category': + cats = sorted(df[col].dropna().unique().tolist(), key=str) + cat_map = {v: i for i, v in enumerate(cats)} + df[col] = df[col].map(cat_map).astype(float) + cat_encodings[col] = cats + print(f"[TabPFGen] Label-encoded '{col}' ({len(cats)} categories)") + +target_cats = None +if df[target_col].dtype == object or str(df[target_col].dtype) == 'category': + cats = sorted(df[target_col].dropna().unique().tolist(), key=str) + t_map = {v: i for i, v in enumerate(cats)} + df[target_col] = df[target_col].map(t_map).astype(float) + target_cats = cats + print(f"[TabPFGen] Label-encoded target '{target_col}' ({len(cats)} categories)") + +X = df[feature_cols].values.astype(np.float32) +y = df[target_col].values +target_n = int(10368) + +for i in range(X.shape[1]): + col_vals = X[:, i] + mask = np.isnan(col_vals) + if mask.any(): + mean_val = np.nanmean(col_vals) + X[mask, i] = mean_val if not np.isnan(mean_val) else 0.0 + +# TabPFGen v0.1.x API:仅支持 n_sgld_steps / sgld_* / device。 +# (旧版脚本中的 energy_*_chunk 与上游 TabPFGen 不一致,会导致 TypeError。) +gen = TabPFGen( + n_sgld_steps=1000, + sgld_step_size=0.01, + sgld_noise_scale=0.01, + device="auto", +) + +print(f"[TabPFGen] Generating {target_n} rows via generate_classification") +X_syn, y_syn = gen.generate_classification(X, y, n_samples=target_n) + +syn_df = pd.DataFrame(X_syn, columns=feature_cols) +syn_df[target_col] = y_syn + +for col, cats in cat_encodings.items(): + codes = np.round(syn_df[col].values).astype(int) + codes = np.clip(codes, 0, len(cats) - 1) + syn_df[col] = [cats[c] for c in codes] + +if target_cats is not None: + codes = np.round(syn_df[target_col].values).astype(int) + codes = np.clip(codes, 0, len(target_cats) - 1) + syn_df[target_col] = [target_cats[c] for c in codes] + +if len(syn_df) > target_n: + print(f"[TabPFGen] Trimming rows: {len(syn_df)} -> {target_n}") + syn_df = syn_df.iloc[:target_n].copy() +elif len(syn_df) < target_n: + deficit = target_n - len(syn_df) + print(f"[TabPFGen] Padding rows: {len(syn_df)} -> {target_n} (deficit={deficit})") + if len(syn_df) > 0: + extra = syn_df.sample(n=deficit, replace=True, random_state=42) + syn_df = pd.concat( + [syn_df.reset_index(drop=True), extra.reset_index(drop=True)], + ignore_index=True, + ) + else: + syn_df = df[feature_cols + [target_col]].sample( + n=target_n, replace=True, random_state=42 + ).reset_index(drop=True) + +syn_df = syn_df[list(df.columns)] +if len(syn_df) != target_n: + raise RuntimeError( + f"[TabPFGen] Row alignment failed: got {len(syn_df)}, expected {target_n}" + ) +syn_df.to_csv("/work/output-Benchmark-trainonly-v1/c7/tabpfgen/tabpfgen-c7-20260429_061314/tabpfgen-c7-10368-20260429_061314.csv", index=False) +print(f"[TabPFGen] Saved {len(syn_df)} rows -> /work/output-Benchmark-trainonly-v1/c7/tabpfgen/tabpfgen-c7-20260429_061314/tabpfgen-c7-10368-20260429_061314.csv") diff --git 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sha256:11bb6aee31a1bcbe969d798a8a69906cd73c17223291104079b93797d7cf94d0 +size 843881 diff --git a/SynthData0523/main/c7/tabpfgen/tabpfgen-c7-20260429_061314/tabpfgen_meta.json b/SynthData0523/main/c7/tabpfgen/tabpfgen-c7-20260429_061314/tabpfgen_meta.json new file mode 100644 index 0000000000000000000000000000000000000000..aa824d7a5b8bdb54104124c7486c77f54da0048a --- /dev/null +++ b/SynthData0523/main/c7/tabpfgen/tabpfgen-c7-20260429_061314/tabpfgen_meta.json @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6d24b564dc79998c779f88388e7cb852959589d51fff04613dbb2fe1da220388 +size 445 diff --git a/SynthData0523/main/c7/tabpfgen/tabpfgen-c7-20260429_061314/train_20260429_061314.log b/SynthData0523/main/c7/tabpfgen/tabpfgen-c7-20260429_061314/train_20260429_061314.log new file mode 100644 index 0000000000000000000000000000000000000000..6b247d09b96afd4c14d366cc4e7eaf666815f21e --- /dev/null +++ b/SynthData0523/main/c7/tabpfgen/tabpfgen-c7-20260429_061314/train_20260429_061314.log @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:73ec563d826ab6396f832e3e1487289794c7c2a744680d747abf25ceb3611619 +size 595 diff --git a/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/_tabsyn_sample.py b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/_tabsyn_sample.py new file mode 100644 index 0000000000000000000000000000000000000000..775768d8f0d8ea7c185e9bae06c95d8ce836e4e4 --- /dev/null +++ b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/_tabsyn_sample.py @@ -0,0 +1,39 @@ +import os, sys, subprocess + +work_dir = "/work/output-SpecializedModels/c7/tabsyn/tabsyn-c7-20260420_233446" +dataname = "tabsyn_c7" +output_csv = "/work/output-SpecializedModels/c7/tabsyn/tabsyn-c7-20260420_233446/tabsyn-c7-10368-20260421_004501.csv" +tabsyn_root = "/workspace/tabsyn" + +assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}" + +old = os.environ.get("PYTHONPATH", "") +os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "") +sys.path.insert(0, tabsyn_root) + +os.chdir(tabsyn_root) + +# Ensure data symlink exists +data_link = os.path.join(tabsyn_root, "data", dataname) +data_src = os.path.join(work_dir, "data", dataname) +os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True) +if os.path.exists(data_link): + os.remove(data_link) +os.symlink(data_src, data_link) + +print(f"[TabSyn] Sampling 10368 rows") +env = os.environ.copy() +env.setdefault("TABSYN_RESUME", "1") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "sample", + "--method", "tabsyn", + "--gpu", "0", + "--save_path", output_csv], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + sys.exit(ret.returncode) +print(f"[TabSyn] Saved -> {output_csv}") diff --git a/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/_tabsyn_train.py b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/_tabsyn_train.py new file mode 100644 index 0000000000000000000000000000000000000000..2cb2fb84542ff650609d6bfa869ae61e30826af9 --- /dev/null +++ b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/_tabsyn_train.py @@ -0,0 +1,62 @@ +import os, sys, subprocess + +work_dir = "/work/output-SpecializedModels/c7/tabsyn/tabsyn-c7-20260420_233446" +dataname = "tabsyn_c7" +tabsyn_root = "/workspace/tabsyn" + +assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}" + +old = os.environ.get("PYTHONPATH", "") +os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "") +sys.path.insert(0, tabsyn_root) + +os.chdir(tabsyn_root) + +# Symlink data dir into TabSyn data/ +data_link = os.path.join(tabsyn_root, "data", dataname) +data_src = os.path.join(work_dir, "data", dataname) +os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True) +if os.path.exists(data_link): + os.remove(data_link) +os.symlink(data_src, data_link) + +env = os.environ.copy() +env.setdefault("TABSYN_RESUME", "1") +_te = None +if _te is not None: + env["TABSYN_VAE_EPOCHS"] = str(_te) + env["TABSYN_DIFFUSION_MAX_EPOCHS"] = str(max(_te + 1, 2)) + +# Data preprocessing is done on the host side (_prepare_data_dir) +# which creates .npy files, train/test CSVs, and info.json + +# Step 1: Train VAE (produces latent embeddings) +print(f"[TabSyn] Step 1/2: Training VAE in {tabsyn_root}, dataname={dataname}") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "train", + "--method", "vae", + "--gpu", "0"], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + print("[TabSyn] VAE training failed") + sys.exit(ret.returncode) + +# Step 2: Train diffusion model on latent space +print(f"[TabSyn] Step 2/2: Training diffusion model") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "train", + "--method", "tabsyn", + "--gpu", "0"], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + print("[TabSyn] Diffusion training failed") + sys.exit(ret.returncode) +print("[TabSyn] Training complete (VAE + Diffusion)") diff --git a/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/data/tabsyn_c7/X_cat_test.npy b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/data/tabsyn_c7/X_cat_test.npy new file mode 100644 index 0000000000000000000000000000000000000000..10356328239808f8ebf9a94ee11860628bc2f5aa --- /dev/null +++ b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/data/tabsyn_c7/X_cat_test.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cd640bebcc215e08eccfdd043b2feb09235ed70b8137fa742fcdade2660724e9 +size 72704 diff --git a/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/data/tabsyn_c7/X_cat_train.npy b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/data/tabsyn_c7/X_cat_train.npy new file mode 100644 index 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0 + ], + "cat_col_idx": [ + 1, + 2, + 3, + 4, + 5, + 6, + 7 + ], + "target_col_idx": [ + 8 + ], + "column_names": [ + "parents", + "has_nurs", + "form", + "children", + "housing", + "finance", + "social", + "health", + "class" + ], + "train_num": 11664, + "test_num": 1296, + "header": 0, + "file_type": "csv", + "data_path": "data/tabsyn_c7/train.csv", + "test_path": null, + "idx_mapping": { + "0": 0, + "1": 1, + "2": 2, + "3": 3, + "4": 4, + "5": 5, + "6": 6, + "7": 7, + "8": 8 + }, + "inverse_idx_mapping": { + "0": 0, + "1": 1, + "2": 2, + "3": 3, + "4": 4, + "5": 5, + "6": 6, + "7": 7, + "8": 8 + }, + "idx_name_mapping": { + "0": "parents", + "1": "has_nurs", + "2": "form", + "3": "children", + "4": "housing", + "5": "finance", + "6": "social", + "7": "health", + "8": "class" + }, + "n_classes": 5, + "metadata": { + "columns": { + "0": { + "sdtype": "numerical", + "computer_representation": "Float" + }, + "1": { + "sdtype": "categorical" + }, + "2": { + "sdtype": "categorical" + }, + 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a/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/input_snapshot.json b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/input_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..fb7245e08a32f0563985ab6661bc6a7f63b112b4 --- /dev/null +++ b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/input_snapshot.json @@ -0,0 +1,36 @@ +{ + "dataset_id": "c7", + "model": "tabsyn", + "inputs": { + "train_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c7/c7-train.csv", + "exists": true, + "size": 857718, + "sha256": "0ec97b49cecfd452f07551a63db7b812b5998a1e37101eae82255d00aa6a6243" + }, + "val_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c7/c7-val.csv", + "exists": true, + "size": 107489, + "sha256": "4501bb2be19f7e13b7ff5e9dedd74e3dd42f2cafc8cefd5435bda61fc974a769" + }, + "test_csv": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/c7/c7-test.csv", + "exists": true, + "size": 107327, + "sha256": "f9e808033a07feabb980addcf8c5f75111189ac2fb70993b8ad0f5ca3d5cfbae" + }, + "profile_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c7/c7-dataset_profile.json", + "exists": true, + "size": 4014, + "sha256": "60424c615b91a26cf02d9bc1d7f91caa0ceb95bab39eb7cff6f9edea3ca0600e" + }, + "contract_json": { + "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/c7/c7-dataset_contract_v1.json", + "exists": true, + "size": 4759, + "sha256": "79a434a1e2553b14b9f2e98c1adfc32a71aaa0d6cd49234f3f8a5603efca4ebd" + } + } +} \ No newline at end of file diff --git a/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/public_gate/normalized_schema_snapshot.json b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/public_gate/normalized_schema_snapshot.json new file mode 100644 index 0000000000000000000000000000000000000000..3ea4859ec2aa245a19531b254f45d87237c23069 --- /dev/null +++ b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260420_233446/public_gate/normalized_schema_snapshot.json @@ -0,0 +1,183 @@ +{ + "dataset_id": "c7", + "target_column": "class", + "task_type": "classification", + "columns": [ + { + "name": "parents", + "role": "feature", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 3, + "unique_ratio": 0.000289, + "example_values": [ + "usual", + "pretentious", + "great_pret" + ] + } + }, + { + "name": "has_nurs", + "role": "feature", + "semantic_type": "categorical", + "nullable": false, + "missing_tokens": [], + "parse_format": null, + "impute_strategy": "mode", + "profile_stats": { + "missing_rate": 0.0, + "unique_count": 5, + "unique_ratio": 0.000482, + "example_values": [ + "very_crit", + "critical", + "improper", + "less_proper", + "proper" + ] + } + }, + { + "name": "form", + "role": "feature", + 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0000000000000000000000000000000000000000..ac414667eb089c0d6abb603dde4e3c855b25bc66 --- /dev/null +++ b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260429_052312/_tabsyn_sample.py @@ -0,0 +1,39 @@ +import os, sys, subprocess + +work_dir = "/work/output-Benchmark-trainonly-v1/c7/tabsyn/tabsyn-c7-20260429_052312" +dataname = "tabsyn_c7" +output_csv = "/work/output-Benchmark-trainonly-v1/c7/tabsyn/tabsyn-c7-20260429_052312/tabsyn-c7-10368-20260429_061302.csv" +tabsyn_root = "/workspace/tabsyn" + +assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}" + +old = os.environ.get("PYTHONPATH", "") +os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "") +sys.path.insert(0, tabsyn_root) + +os.chdir(tabsyn_root) + +# Ensure data symlink exists +data_link = os.path.join(tabsyn_root, "data", dataname) +data_src = os.path.join(work_dir, "data", dataname) +os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True) +if os.path.exists(data_link): + os.remove(data_link) +os.symlink(data_src, data_link) + +print(f"[TabSyn] Sampling 10368 rows") +env = os.environ.copy() +env.setdefault("TABSYN_RESUME", "1") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "sample", + "--method", "tabsyn", + "--gpu", "0", + "--save_path", output_csv], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + sys.exit(ret.returncode) +print(f"[TabSyn] Saved -> {output_csv}") diff --git a/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260429_052312/_tabsyn_train.py b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260429_052312/_tabsyn_train.py new file mode 100644 index 0000000000000000000000000000000000000000..a9f348266ba8291c4e3298592ef99cf71b0fe44a --- /dev/null +++ b/SynthData0523/main/c7/tabsyn/tabsyn-c7-20260429_052312/_tabsyn_train.py @@ -0,0 +1,65 @@ +import os, sys, subprocess + +work_dir = "/work/output-Benchmark-trainonly-v1/c7/tabsyn/tabsyn-c7-20260429_052312" +dataname = "tabsyn_c7" +tabsyn_root = "/workspace/tabsyn" + +assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}" + +old = os.environ.get("PYTHONPATH", "") +os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "") +sys.path.insert(0, tabsyn_root) + +os.chdir(tabsyn_root) + +# Symlink data dir into TabSyn data/ +data_link = os.path.join(tabsyn_root, "data", dataname) +data_src = os.path.join(work_dir, "data", dataname) +os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True) +if os.path.exists(data_link): + os.remove(data_link) +os.symlink(data_src, data_link) + +env = os.environ.copy() +env.setdefault("TABSYN_RESUME", "1") +env.setdefault("TABSYN_VAE_BATCH_SIZE", "1024") +# Safer defaults for wide tables on Docker: reduce shared-memory pressure in diffusion DataLoader. +env.setdefault("TABSYN_DIFFUSION_NUM_WORKERS", "0") +_te = None +if _te is not None: + env["TABSYN_VAE_EPOCHS"] = str(_te) + env["TABSYN_DIFFUSION_MAX_EPOCHS"] = str(max(_te + 1, 2)) + +# Data preprocessing is done on the host side (_prepare_data_dir) +# which creates .npy files, train/test CSVs, and info.json + +# Step 1: Train VAE (produces latent embeddings) +print(f"[TabSyn] Step 1/2: Training VAE in {tabsyn_root}, dataname={dataname}") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "train", + "--method", "vae", + "--gpu", "0"], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + print("[TabSyn] VAE training failed") + sys.exit(ret.returncode) + +# Step 2: Train diffusion model on latent space +print(f"[TabSyn] Step 2/2: Training diffusion model") +ret = subprocess.run( + [sys.executable, "main.py", + "--dataname", dataname, + "--mode", "train", + "--method", "tabsyn", + "--gpu", "0"], + cwd=tabsyn_root, + env=env +) +if ret.returncode != 0: + print("[TabSyn] Diffusion training failed") + sys.exit(ret.returncode) +print("[TabSyn] Training complete (VAE + Diffusion)")