diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..85f1067455bd468f43764b8419a75f493dd79e26 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:59:14.859654+00:00", + "ended_at": "2026-05-19T15:59:18.004199+00:00", + "elapsed_ms": 3144.5, + "returncode": 1, + "prompt_metrics": { + "chars": 4761, + "bytes_utf8": 4761, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a4cca5b2a8800dd81eb176042403d7756c9b18eb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:59:19.006653+00:00", + "ended_at": "2026-05-19T15:59:22.298320+00:00", + "elapsed_ms": 3291.62, + "returncode": 1, + "prompt_metrics": { + "chars": 4761, + "bytes_utf8": 4761, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..5639325e33584659d7822d077d80ad2ccbc6789a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_count", + "template_name": "Grouped Count by Category", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_count", + "bindings": { + "group_col": "EI", + "top_k": 10, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..5639325e33584659d7822d077d80ad2ccbc6789a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_count", + "template_name": "Grouped Count by Category", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_count", + "bindings": { + "group_col": "EI", + "top_k": 10, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..5238dcb66be0ae48ae6e881c14b83c9e191c84bd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-78d8-7e53-b744-8eeb7e489db0"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..35a607f448ace593c7ac53873e37cec875e0b1f0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-78d8-7e53-b744-8eeb7e489db0"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..44241eaaf750186db70718db5e5e9710aec92b53 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-8908-7071-8084-9403140fa5ac"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..091f385a1eebdebbaee9636616b7e08e271432d6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-8908-7071-8084-9403140fa5ac"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0697cd20a42400e3/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..eee65827694a96b5f03b0b3b6e9dff5cc3fd738a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:57:59.472250+00:00", + "ended_at": "2026-05-19T15:58:02.612495+00:00", + "elapsed_ms": 3140.22, + "returncode": 1, + "prompt_metrics": { + "chars": 4975, + "bytes_utf8": 4975, + "lines": 132, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..3806ce5ac205b6ca2de0a000a4841273cef927a1 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:58:03.614696+00:00", + "ended_at": "2026-05-19T15:58:06.302515+00:00", + "elapsed_ms": 2687.76, + "returncode": 1, + "prompt_metrics": { + "chars": 4975, + "bytes_utf8": 4975, + "lines": 132, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..6f5f20ecedd71c1d9fc190bb1a50d925645a7a08 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,132 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_distinct_topk", + "bindings": { + "group_col": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 12, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..6f5f20ecedd71c1d9fc190bb1a50d925645a7a08 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,132 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_distinct_topk", + "bindings": { + "group_col": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 12, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..5cebdb192ddd2162c97b1f250e201a4a875e3b16 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f5-5246-7cf3-bb2a-d91cddfd8140"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..c1292d6e26927c1a9c68e4561285453c9b01e454 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f5-5246-7cf3-bb2a-d91cddfd8140"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..e5e3d7cc8feef0a30658a169ee5cff48476ad975 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f5-626c-7390-a762-1e3a66f0fcf9"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..79ff2e2d55f854a5402b91d5e766c165938dda91 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f5-626c-7390-a762-1e3a66f0fcf9"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_077aa442eb3dd4dc/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..ab4b1721172d85947ca743aeebd34ebf16271043 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5176, "bytes_utf8": 5176, "lines": 133, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 505, "bytes_utf8": 505, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13878, "cached_input_tokens": 12032, "output_tokens": 465, "reasoning_output_tokens": 316}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..a3437a999c594f38a757fcdf3b4877bf66affa79 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_08614a7c7211f37a", + "api_calls": 0, + "input_tokens": 13878, + "cached_input_tokens": 12032, + "output_tokens": 465, + "total_tokens": 14343, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 11796.04, + "sql_execution_elapsed_ms_total": 1.36, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..57f37afa5dab058473df4053943c7f7dab0c933d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:05:56.856792+00:00", + "ended_at": "2026-05-19T16:06:08.652857+00:00", + "elapsed_ms": 11796.04, + "prompt_metrics": { + "chars": 5176, + "bytes_utf8": 5176, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 860, + "bytes_utf8": 860, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 505, + "bytes_utf8": 505, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13878, + "cached_input_tokens": 12032, + "output_tokens": 465, + "reasoning_output_tokens": 316 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..28b2ea7a88c467b1f91e3cfb8d8a9400fbe9e881 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "IE", + "top_k": 11, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..a8cc005c3115784c0b902cfed18e414d29398998 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-9afd-7fa0-949f-efe8fb7fa299"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_target_rate_extremes_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support,\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS focus_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nHAVING COUNT(*) >= 5\\nORDER BY focus_rate DESC, support ASC\\nLIMIT 11;\",\"notes\":\"Uses the requested template with group_col and target_col both bound to \\\"EI\\\". Because the grouping column equals the target column, the IE group will have focus_rate 1.0 and the other EI labels will have focus_rate 0.0.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13878,"cached_input_tokens":12032,"output_tokens":465,"reasoning_output_tokens":316}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..f7bd2bcd43905c7f3b7b8348d08e6b932b7ba0df --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_target_rate_extremes_v2\nSELECT\n \"EI\",\n COUNT(*) AS support,\n AVG(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS focus_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nHAVING COUNT(*) >= 5\nORDER BY focus_rate DESC, support ASC\nLIMIT 11;","notes":"Uses the requested template with group_col and target_col both bound to \"EI\". Because the grouping column equals the target column, the IE group will have focus_rate 1.0 and the other EI labels will have focus_rate 0.0."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_08614a7c7211f37a/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..83cd82c1ada3cdce2f971b2d0d458e702d40689b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:54.256430+00:00", + "ended_at": "2026-05-19T16:10:57.177243+00:00", + "elapsed_ms": 2920.79, + "returncode": 1, + "prompt_metrics": { + "chars": 5224, + "bytes_utf8": 5224, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f74ddaa5c178921547d95b386edf511b8ef850cd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:58.178792+00:00", + "ended_at": "2026-05-19T16:11:01.142600+00:00", + "elapsed_ms": 2963.77, + "returncode": 1, + "prompt_metrics": { + "chars": 5224, + "bytes_utf8": 5224, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..9e2eba164cc6f430edbe0b553ce56182218d0e8b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 14, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..9e2eba164cc6f430edbe0b553ce56182218d0e8b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 14, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..61ebde8deaa49b60250e8964278c96f682e881d8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-24aa-79d0-afd3-ea58b4498138"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..de77cc146b1dab67f7a4fdac4dbb96da168e6965 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-24aa-79d0-afd3-ea58b4498138"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..ae178392c75de7fb88f402a3a88921caf21354a4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-33f9-7832-82d8-64e52c4bbe87"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..fb3303428ecb85ddd954d4ff5fecd53cc5f37bf0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-33f9-7832-82d8-64e52c4bbe87"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0e2909cc792751ff/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..540b9a6bb341b47f5d551fd9a3dcbcf05aa0a2a7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:02.462257+00:00", + "ended_at": "2026-05-19T16:10:05.289610+00:00", + "elapsed_ms": 2827.31, + "returncode": 1, + "prompt_metrics": { + "chars": 5182, + "bytes_utf8": 5182, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6042ed05ef8d13b394d9a72622d7a81e90ab1b8b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:06.291129+00:00", + "ended_at": "2026-05-19T16:10:09.197201+00:00", + "elapsed_ms": 2906.04, + "returncode": 1, + "prompt_metrics": { + "chars": 5182, + "bytes_utf8": 5182, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..63f642dc93f5216d6533cb61146889272d4c5010 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "entity_col": "ATRINS-DONOR-521", + "top_k": 19, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..63f642dc93f5216d6533cb61146889272d4c5010 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "entity_col": "ATRINS-DONOR-521", + "top_k": 19, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..19e69fe67f136cd0e33102f867a6d420bc26e78d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-5a69-7261-9a7b-b4aa6a9f1729"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..21e3987128262dd1e54aa67a1da1e2cc3b754377 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-5a69-7261-9a7b-b4aa6a9f1729"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..cd0a2d65eb02fb51c1c11880f179096f2988e4eb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-694e-76a0-acae-9687c0727cf7"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..b8c8372a199d8f3cad36d0abbc9433b04f4c3067 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-694e-76a0-acae-9687c0727cf7"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_0f70f52256307257/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..43be4bdb50c808f2a64c7f123a1933e1e9f9d89f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:06:08.657654+00:00", + "ended_at": "2026-05-19T16:06:12.712373+00:00", + "elapsed_ms": 4054.7, + "returncode": 1, + "prompt_metrics": { + "chars": 5180, + "bytes_utf8": 5180, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..70adc0a57fb302e9bbb966734cdec9217184816e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:06:13.713984+00:00", + "ended_at": "2026-05-19T16:06:16.759393+00:00", + "elapsed_ms": 3045.33, + "returncode": 1, + "prompt_metrics": { + "chars": 5180, + "bytes_utf8": 5180, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..ab0e8e1f4537601e2cf4f6b99e79df79b95fd380 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "IE", + "top_k": 16, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..ab0e8e1f4537601e2cf4f6b99e79df79b95fd380 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "IE", + "top_k": 16, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..22798f6a9255eaea7795f2dc99471b2797d2bf76 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-c919-7412-8e07-bbf8bb61c64d"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..5ca07805c46d5a7f7aa8a5a49d96002e3cf1a675 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-c919-7412-8e07-bbf8bb61c64d"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..e9fc0c1d86466db771bd9f185a55d3d112eef5cb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-dcd0-73e3-940d-01e83e8ccdff"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..6ab81a5ca59be9802e93475db4ff43c09e0f96c8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-dcd0-73e3-940d-01e83e8ccdff"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1088e33b8a61fbd6/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..a2e37691e68f3a06cf5eb6c22972e297e2ed6100 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5085, "bytes_utf8": 5085, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 446, "bytes_utf8": 446, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13825, "cached_input_tokens": 12032, "output_tokens": 296, "reasoning_output_tokens": 170}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..9fe500584424dd9389ac23ae4ca80001b506594c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_13c3ae44541d5053", + "api_calls": 0, + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 296, + "total_tokens": 14121, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 8374.4, + "sql_execution_elapsed_ms_total": 1.42, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..585ae2db17bc635aaf2c8d6730d3c4b54568c213 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:00:20.559783+00:00", + "ended_at": "2026-05-19T16:00:28.934203+00:00", + "elapsed_ms": 8374.4, + "prompt_metrics": { + "chars": 5085, + "bytes_utf8": 5085, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 801, + "bytes_utf8": 801, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 446, + "bytes_utf8": 446, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 296, + "reasoning_output_tokens": 170 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..4036d227be540389d5d975efb9330887efa86596 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe direction_consistency with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "IE", + "positive_value": "N", + "negative_value": "IE", + "top_k": 15, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..0a91b4867720919d55a4f3b9e2b49eec97f5c00c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f7-7968-71c3-ba10-53bb94e86ec2"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Applied the planned Grouped Condition Rate template with group_col=\\\"EI\\\" and condition_col=\\\"EI\\\". Because the grouping column and condition column are the same, the resulting rate is 1.0 for group 'IE' and 0.0 for other EI labels.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13825,"cached_input_tokens":12032,"output_tokens":296,"reasoning_output_tokens":170}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..efad6dce784d917653807439d0afc7e11cc88612 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;","notes":"Applied the planned Grouped Condition Rate template with group_col=\"EI\" and condition_col=\"EI\". Because the grouping column and condition column are the same, the resulting rate is 1.0 for group 'IE' and 0.0 for other EI labels."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13c3ae44541d5053/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..0b991c57784750d11c1f9ccf928c71ca0b8161ae --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/conversation.jsonl @@ -0,0 +1,4 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5091, "bytes_utf8": 5091, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "status": "failed", "error": "AI CLI command failed with exit code 1: "} +{"attempt": 2, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_2.txt", "metrics": {"chars": 5091, "bytes_utf8": 5091, "lines": 135, "estimated_tokens": null}} +{"attempt": 2, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_2.txt", "raw_content_path": "cli/sql_response_attempt_2.raw.txt", "stderr_path": "cli/sql_stderr_attempt_2.txt", "metrics": {"chars": 489, "bytes_utf8": 489, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13825, "cached_input_tokens": 12032, "output_tokens": 445, "reasoning_output_tokens": 309}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..cf4ab1fda20afba6de9687558289dd43b696192f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 2, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_13f9d64450522747", + "api_calls": 0, + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 445, + "total_tokens": 14270, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 13195.03, + "sql_execution_elapsed_ms_total": 2.69, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8d3fc44c4d864b6cf20921804a64560979eca009 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:59:49.005376+00:00", + "ended_at": "2026-05-19T15:59:52.723570+00:00", + "elapsed_ms": 3718.17, + "returncode": 1, + "prompt_metrics": { + "chars": 5091, + "bytes_utf8": 5091, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5db753a292988fff99a30e2e186c8831759d0946 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_attempt_2.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:59:53.725050+00:00", + "ended_at": "2026-05-19T16:00:03.201958+00:00", + "elapsed_ms": 9476.86, + "prompt_metrics": { + "chars": 5091, + "bytes_utf8": 5091, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 840, + "bytes_utf8": 840, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 489, + "bytes_utf8": 489, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 445, + "reasoning_output_tokens": 309 + } + }, + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..3dbd0242edcdb5e910aa9a725f114d584b52c44a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 14, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..3dbd0242edcdb5e910aa9a725f114d584b52c44a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 14, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..906a22170c729fb919e699917107f7ddc0a45d96 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-fe23-72c1-847e-acc6e16dc92e"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..69ed182b82de97364a9c18e34e419d95fd0b6585 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-fe23-72c1-847e-acc6e16dc92e"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..764798a46e68e7699524aa4644fe5e2ef9bfdc4d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f7-1098-7550-9ecb-d192138b0d50"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Applied the Grouped Condition Rate template with group_col and condition_col both set to \\\"EI\\\" and condition_value set to 'N'. Since the grouping column and condition column are the same, the result is a within-group proportion of 1.0 for EI='N' and 0.0 for the other labels.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13825,"cached_input_tokens":12032,"output_tokens":445,"reasoning_output_tokens":309}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..8a8502624579b6faaa4a330525190d3b51315b2e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_response_attempt_2.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;","notes":"Applied the Grouped Condition Rate template with group_col and condition_col both set to \"EI\" and condition_value set to 'N'. Since the grouping column and condition column are the same, the result is a within-group proportion of 1.0 for EI='N' and 0.0 for the other labels."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_13f9d64450522747/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c8c9f59194e37eb9c14c52f8a9e3f73fc4ffaf4a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:46.756337+00:00", + "ended_at": "2026-05-19T16:10:49.971574+00:00", + "elapsed_ms": 3215.2, + "returncode": 1, + "prompt_metrics": { + "chars": 5182, + "bytes_utf8": 5182, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a66b01c0c89c422fdde0d5f3694b1a9d2f941391 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:50.973044+00:00", + "ended_at": "2026-05-19T16:10:54.254476+00:00", + "elapsed_ms": 3281.4, + "returncode": 1, + "prompt_metrics": { + "chars": 5182, + "bytes_utf8": 5182, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..a3c39e153aff597b75b1eb9962c4f559bc8e4b6e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 18, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..a3c39e153aff597b75b1eb9962c4f559bc8e4b6e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 18, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..024472b62562515b35eca472cfc6e53520e56ac7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-076e-7c23-babf-e1c14f81ed3f"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..b62d1c834445a9390c12dd4658013dec87e5a778 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-076e-7c23-babf-e1c14f81ed3f"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..ed477742ab487109f5557778761d7b49b5180ee5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-17eb-7f20-a2a5-ba4eb736606f"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..562a9cff62d62c59d4e61c49d7e2a314c01cda09 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-17eb-7f20-a2a5-ba4eb736606f"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..254e2ecc0dc0d51ba494618670b3d0064a16e467 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/run_manifest.json @@ -0,0 +1,73 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:10:46.754455+00:00", + "ended_at": "2026-05-19T16:10:54.255222+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_19809cab91dc14ba", + "problem_id": "v2p_c3_ca74f23758eb754b", + "dataset_id": "c3", + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "family_id": "subgroup_structure", + "canonical_subitem_id": "internal_profile_stability", + "intended_facet_id": "subgroup_conditional_contrast", + "variant_semantic_role": "ranked_signal_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "support", + "extended_family": false, + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 18, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "entity_col", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift,subgroup_rank_order,subgroup_conditional_contrast", + "template_selection_mode=rule", + "problem_index_within_template=5", + "sql_variant_index=2/2", + "binding_index=88" + ], + "template_selection_mode": "rule", + "selected_template_rank": 8, + "problem_index_within_template": 5, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..9cbc4f54fa8344e872b9a323a4b04a3086777dde --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_19809cab91dc14ba/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:10:49.972301+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3215.2, "started_at": "2026-05-19T16:10:46.756337+00:00", "ended_at": "2026-05-19T16:10:49.971574+00:00", "prompt_metrics": {"chars": 5182, "bytes_utf8": 5182, "lines": 136, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4101-076e-7c23-babf-e1c14f81ed3f\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:10:54.255138+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3281.4, "started_at": "2026-05-19T16:10:50.973044+00:00", "ended_at": "2026-05-19T16:10:54.254476+00:00", "prompt_metrics": {"chars": 5182, "bytes_utf8": 5182, "lines": 136, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4101-17eb-7f20-a2a5-ba4eb736606f\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d7a9c53df66b6dc5cdc7902c283286a56c76e2ce --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:59:30.217944+00:00", + "ended_at": "2026-05-19T15:59:33.192111+00:00", + "elapsed_ms": 2974.13, + "returncode": 1, + "prompt_metrics": { + "chars": 4761, + "bytes_utf8": 4761, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b13a673d1901bb28a587f7381df36b3f3c6b61ec --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:59:34.194277+00:00", + "ended_at": "2026-05-19T15:59:37.526101+00:00", + "elapsed_ms": 3331.77, + "returncode": 1, + "prompt_metrics": { + "chars": 4761, + "bytes_utf8": 4761, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..b9bfca0a95c485ed329824a588b1ed3bd4858459 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_count", + "template_name": "Grouped Count by Category", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_count", + "bindings": { + "group_col": "EI", + "top_k": 12, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..b9bfca0a95c485ed329824a588b1ed3bd4858459 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_count", + "template_name": "Grouped Count by Category", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_count", + "bindings": { + "group_col": "EI", + "top_k": 12, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..9811bc29bde608ea937909b6019bb9d62b1b4b47 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-b4b9-7502-882f-8bc5c294329b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..b7b5fb931a0c8792e03b2e3635b455bc70285b23 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-b4b9-7502-882f-8bc5c294329b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..1aac36270d27aa50f936af434c5135ec888a4a76 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-c434-7d90-9bc6-3bc824535a15"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..2d757ffcdef6933e26c6c87123fc87a0afa744e6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-c434-7d90-9bc6-3bc824535a15"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_1fd327b36ba35991/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..66dcb9abaaa58d148738c572fd74ef6ed04e155b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:00:49.285230+00:00", + "ended_at": "2026-05-19T16:00:52.563863+00:00", + "elapsed_ms": 3278.6, + "returncode": 1, + "prompt_metrics": { + "chars": 5077, + "bytes_utf8": 5077, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5efc16f6d3b97ed2c77aa1df6952df47dce767f6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:00:53.565880+00:00", + "ended_at": "2026-05-19T16:00:56.888119+00:00", + "elapsed_ms": 3322.18, + "returncode": 1, + "prompt_metrics": { + "chars": 5077, + "bytes_utf8": 5077, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..c8449fa84bfbde1841251da84c8b529d69d7e580 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe direction_consistency with semantic role focused_target_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 12, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..c8449fa84bfbde1841251da84c8b529d69d7e580 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe direction_consistency with semantic role focused_target_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 12, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..3dd85e607948bd88463d0bb2621eabf63c489975 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f7-e9b1-76e2-aad6-c79d546f81a1"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..4f3d6755609863e31a048f3ca838ca237b4377f2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f7-e9b1-76e2-aad6-c79d546f81a1"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..805f06541a82c1a3736f77a5eddb077678988854 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f7-fa68-7d81-bbf6-2e370d923fee"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..bb621f49f656220e59b0f1a240f94657247b2049 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f7-fa68-7d81-bbf6-2e370d923fee"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_20ac99c6f587b8a5/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8d265e893cc69e1bea614db995ddea53e11be6ff --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:58.613221+00:00", + "ended_at": "2026-05-19T16:09:02.061893+00:00", + "elapsed_ms": 3448.64, + "returncode": 1, + "prompt_metrics": { + "chars": 5030, + "bytes_utf8": 5030, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9e248be4d917358da5651c7bbbb43e21d12e07a9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:03.064475+00:00", + "ended_at": "2026-05-19T16:09:05.952399+00:00", + "elapsed_ms": 2887.87, + "returncode": 1, + "prompt_metrics": { + "chars": 5030, + "bytes_utf8": 5030, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..a250dc5f10cf6fd7d9a3fb62db9d658f03c7cf06 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 11, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..a250dc5f10cf6fd7d9a3fb62db9d658f03c7cf06 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 11, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..c3fb3d241befaec89e8a2b46cb74225f51763737 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-60fe-78b2-a0d9-bce52fda80ce"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..1dbba8550e91bce31260b01890f879f439a0ca5c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-60fe-78b2-a0d9-bce52fda80ce"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..5fcca8be40707c88be9d5a44466422142de00cff --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-725c-7300-adf8-aa1416f573c8"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..a35b52ca894b80c9645c185f5e90207b900165b4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-725c-7300-adf8-aa1416f573c8"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2187d14ee8deb464/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..58c7ce0a557ca3b11a1cf92eb6994e185fcb8dcc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:18.921221+00:00", + "ended_at": "2026-05-19T16:08:21.864870+00:00", + "elapsed_ms": 2943.63, + "returncode": 1, + "prompt_metrics": { + "chars": 5032, + "bytes_utf8": 5032, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..90eb01cdce565832d420f893dac3bfa1a31f5fb2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:22.866256+00:00", + "ended_at": "2026-05-19T16:08:25.675830+00:00", + "elapsed_ms": 2809.54, + "returncode": 1, + "prompt_metrics": { + "chars": 5032, + "bytes_utf8": 5032, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..df7b3f64b28452a05a3bcd957e91fc237ca4cabb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "top_k": 18, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..df7b3f64b28452a05a3bcd957e91fc237ca4cabb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "top_k": 18, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..8f04da79c89b4a18a7feca96ce8405bb7c8729a5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-c5e7-71f2-9dcd-39d73223409d"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..4a9773ea4989615ca08799c7274ee88287218057 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-c5e7-71f2-9dcd-39d73223409d"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..4ef16556458d24ba37d645f8d377cdb6bb1767ce --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-d54a-76f3-ba27-8ac666901a25"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..4ee16e640bd3a00188563473eb55e86e22925931 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-d54a-76f3-ba27-8ac666901a25"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_292237d7395e1673/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..25b46482d101407298a932821559fb5f3a7216dc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4841, "bytes_utf8": 4841, "lines": 130, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 348, "bytes_utf8": 348, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13776, "cached_input_tokens": 12032, "output_tokens": 245, "reasoning_output_tokens": 151}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..8f8f45c5762ea799ebbc48be6f73aa281b92b25f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_29666820a32f5679", + "api_calls": 0, + "input_tokens": 13776, + "cached_input_tokens": 12032, + "output_tokens": 245, + "total_tokens": 14021, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7852.5, + "sql_execution_elapsed_ms_total": 1.76, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2448a00ae9d26c0cd0920abfb70a7158d741f53e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:03:26.229301+00:00", + "ended_at": "2026-05-19T16:03:34.081834+00:00", + "elapsed_ms": 7852.5, + "prompt_metrics": { + "chars": 4841, + "bytes_utf8": 4841, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 701, + "bytes_utf8": 701, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 348, + "bytes_utf8": 348, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13776, + "cached_input_tokens": 12032, + "output_tokens": 245, + "reasoning_output_tokens": 151 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e72f35327fa3ae77ce8cbd155018b264a2727011 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role rare_extreme_view. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 13, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..ad880eb9ca5470797d6a626571f1369d171785c3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fa-4eae-7812-8e6d-80ad96be3ed8"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_low_support_group_count_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY support ASC, \\\"EI\\\"\\nLIMIT 13;\",\"notes\":\"Uses the Low-Support Group Count template exactly as planned, grouping by the target label column \\\"EI\\\" and returning label counts in ascending support order.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13776,"cached_input_tokens":12032,"output_tokens":245,"reasoning_output_tokens":151}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..c0ec5c946aeaeda4d3bcae5b1af48238af9a47d4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_low_support_group_count_v2\nSELECT\n \"EI\",\n COUNT(*) AS support\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY support ASC, \"EI\"\nLIMIT 13;","notes":"Uses the Low-Support Group Count template exactly as planned, grouping by the target label column \"EI\" and returning label counts in ascending support order."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_29666820a32f5679/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c32e0b61aee5b2f46ecaf12c6d4103da7b298deb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:33.852318+00:00", + "ended_at": "2026-05-19T16:09:36.864782+00:00", + "elapsed_ms": 3012.44, + "returncode": 1, + "prompt_metrics": { + "chars": 5033, + "bytes_utf8": 5033, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..82e7176bb7a0c6de2271d908f28cfd07dc4ad278 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:37.866804+00:00", + "ended_at": "2026-05-19T16:09:41.110491+00:00", + "elapsed_ms": 3243.64, + "returncode": 1, + "prompt_metrics": { + "chars": 5033, + "bytes_utf8": 5033, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..1b4405a1ff2d8c8c6644dcd04beedd4543b86301 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 18, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..1b4405a1ff2d8c8c6644dcd04beedd4543b86301 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 18, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..cf3a23e50e0c1376cd20205a269dec1eb9815159 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-ea9c-77f2-8b18-de9e8cea1048"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..8fe84cced4a3fd0e5d05cb41f99fa883d77ce1e9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-ea9c-77f2-8b18-de9e8cea1048"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..7be3b1fef3444d967cfa547a672424dfca306dc3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-fa51-7960-b604-24a26bce0821"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..59210b02c8b497cb07e2827ea4395048ac267dc7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-fa51-7960-b604-24a26bce0821"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2b0baeead50d31af/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..6dddd3816e7e7d7d361fe44bce6d49e0ac7c0812 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5089, "bytes_utf8": 5089, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 502, "bytes_utf8": 502, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13824, "cached_input_tokens": 12032, "output_tokens": 309, "reasoning_output_tokens": 171}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..dbab832a36c8b11bf285b5cb3cca230228972b68 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_2bccb17faf4604f9", + "api_calls": 0, + "input_tokens": 13824, + "cached_input_tokens": 12032, + "output_tokens": 309, + "total_tokens": 14133, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 8870.89, + "sql_execution_elapsed_ms_total": 1.21, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..bd5a47ee4962a21ee1ab05bbb7ca98e7964f720e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:01:22.861371+00:00", + "ended_at": "2026-05-19T16:01:31.732300+00:00", + "elapsed_ms": 8870.89, + "prompt_metrics": { + "chars": 5089, + "bytes_utf8": 5089, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 857, + "bytes_utf8": 857, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 502, + "bytes_utf8": 502, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13824, + "cached_input_tokens": 12032, + "output_tokens": 309, + "reasoning_output_tokens": 171 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..201adbe216fb41911fe472df755b6729705f5f06 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role focused_target_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "IE", + "positive_value": "N", + "negative_value": "IE", + "top_k": 18, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..3e85718d36a1919046c204faa3ce1f5dfecba9fd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-6cd7-7d63-9e5d-70004a01d60c"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Applied the provided Grouped Condition Rate template with group_col=\\\"EI\\\" and condition_col=\\\"EI\\\". Because the grouping column and condition column are the same, this measures the share of rows equal to 'IE' within each label group, yielding 1.0 for group 'IE' and 0.0 for other groups.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13824,"cached_input_tokens":12032,"output_tokens":309,"reasoning_output_tokens":171}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..9f5a39d31db49d80164d82324004b24fc0997ee5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;","notes":"Applied the provided Grouped Condition Rate template with group_col=\"EI\" and condition_col=\"EI\". Because the grouping column and condition column are the same, this measures the share of rows equal to 'IE' within each label group, yielding 1.0 for group 'IE' and 0.0 for other groups."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2bccb17faf4604f9/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..97d4dad3ada2ee0351a9ceabff68f9a37b572e09 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5077, "bytes_utf8": 5077, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 403, "bytes_utf8": 403, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13824, "cached_input_tokens": 12032, "output_tokens": 380, "reasoning_output_tokens": 268}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..fb0b00d6e6f2e79231c1659aecd5cb4093f82864 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_2cd261df99be86e7", + "api_calls": 0, + "input_tokens": 13824, + "cached_input_tokens": 12032, + "output_tokens": 380, + "total_tokens": 14204, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10390.13, + "sql_execution_elapsed_ms_total": 1.65, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..62ec9aea8bb1b558233eeb282087dbd68b714046 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:01:31.736702+00:00", + "ended_at": "2026-05-19T16:01:42.126861+00:00", + "elapsed_ms": 10390.13, + "prompt_metrics": { + "chars": 5077, + "bytes_utf8": 5077, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 758, + "bytes_utf8": 758, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 403, + "bytes_utf8": 403, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13824, + "cached_input_tokens": 12032, + "output_tokens": 380, + "reasoning_output_tokens": 268 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..6d097269c1b2049fe423bc265ecc2428a3577e8f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe direction_consistency with semantic role focused_target_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 14, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..b8d8c77a3ba3ed5354f7852575f547911ae170c8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-8f6d-76c3-a259-7338018ce3df"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Applied the Grouped Condition Rate template exactly as bound: group_col=\\\"EI\\\" and condition_col=\\\"EI\\\" with condition_value='N'. This returns the rate of label N within each EI label group.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13824,"cached_input_tokens":12032,"output_tokens":380,"reasoning_output_tokens":268}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..d223cba039279713d46011fba40bfc57fb8fb320 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;","notes":"Applied the Grouped Condition Rate template exactly as bound: group_col=\"EI\" and condition_col=\"EI\" with condition_value='N'. This returns the rate of label N within each EI label group."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2cd261df99be86e7/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..71163f1c70155cbed8feecd30700b5560d6bc22e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:05.954482+00:00", + "ended_at": "2026-05-19T16:09:08.905790+00:00", + "elapsed_ms": 2951.28, + "returncode": 1, + "prompt_metrics": { + "chars": 5033, + "bytes_utf8": 5033, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4a75196bd7b42fb727ca3e439126914bb57a5665 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:09.907932+00:00", + "ended_at": "2026-05-19T16:09:12.773629+00:00", + "elapsed_ms": 2865.66, + "returncode": 1, + "prompt_metrics": { + "chars": 5033, + "bytes_utf8": 5033, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..0966f70d4cf31fb31a69532c7bef55fe021db33f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "top_k": 16, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..0966f70d4cf31fb31a69532c7bef55fe021db33f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "top_k": 16, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..673ce37b825d067e62be9569ed84a06b2875ff5c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-7d98-74d2-a535-f3f910d66294"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..ad6c6fa52ad84fcb541e57510cd3374142c0e903 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-7d98-74d2-a535-f3f910d66294"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..ff70a3848f9a9df57e93e8f6c437263490af871d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-8d25-74c1-ad26-9ef5bd1b5f68"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..892388d53ac6dc0c75d628d986011d7e14870068 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-8d25-74c1-ad26-9ef5bd1b5f68"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..670d3e2cde0c19d4f1e5bf9e4e94032cc4c8fafe --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/run_manifest.json @@ -0,0 +1,71 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:09:05.953559+00:00", + "ended_at": "2026-05-19T16:09:12.774502+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_2dcb860379ebc282", + "problem_id": "v2p_c3_da12379c24e37140", + "dataset_id": "c3", + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "family_id": "subgroup_structure", + "canonical_subitem_id": "subgroup_size_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "filtered_stable_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "top_k": 16, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift", + "template_selection_mode=rule", + "problem_index_within_template=5", + "sql_variant_index=2/2", + "binding_index=76" + ], + "template_selection_mode": "rule", + "selected_template_rank": 7, + "problem_index_within_template": 5, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..26419bb1aee958c91f9cb689c04cbec73bb581c3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_2dcb860379ebc282/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:09:08.906544+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 2951.28, "started_at": "2026-05-19T16:09:05.954482+00:00", "ended_at": "2026-05-19T16:09:08.905790+00:00", "prompt_metrics": {"chars": 5033, "bytes_utf8": 5033, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40ff-7d98-74d2-a535-f3f910d66294\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:09:12.774408+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 2865.66, "started_at": "2026-05-19T16:09:09.907932+00:00", "ended_at": "2026-05-19T16:09:12.773629+00:00", "prompt_metrics": {"chars": 5033, "bytes_utf8": 5033, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40ff-8d25-74c1-ad26-9ef5bd1b5f68\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..3ef9e976bb1db5e17c864ceeb3d52b999ada65a8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:04:29.554234+00:00", + "ended_at": "2026-05-19T16:04:32.836648+00:00", + "elapsed_ms": 3282.37, + "returncode": 1, + "prompt_metrics": { + "chars": 4843, + "bytes_utf8": 4843, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1c8ee64761fec5a0bc20467e31c6758b731ff7c9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:04:33.839502+00:00", + "ended_at": "2026-05-19T16:04:40.225852+00:00", + "elapsed_ms": 6386.3, + "returncode": 1, + "prompt_metrics": { + "chars": 4843, + "bytes_utf8": 4843, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e0de8ebe8cf70603185280a395a379d41ffad228 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_mass_similarity with semantic role rare_extreme_view. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 16, + "top_n": 7, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e0de8ebe8cf70603185280a395a379d41ffad228 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_mass_similarity with semantic role rare_extreme_view. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 16, + "top_n": 7, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..6c087e8d96a94012149bed9c6f44c3e1d7d439aa --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-45f9-7fb1-9c94-7b562017ff0d"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..ce22643bc4068858ea3b27276e8475706ed6cd13 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-45f9-7fb1-9c94-7b562017ff0d"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..7d6150f00b06674871d0da75b7b81ffa263da82c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-56ce-7482-b97e-7836c931b9e5"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e340306424c1dda579bd7f6d3d68f9bd290a79e6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-56ce-7482-b97e-7836c931b9e5"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_303e9274ab7edcef/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..ae24517df4d03b0fb6e5329b1da816f456366453 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5089, "bytes_utf8": 5089, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 394, "bytes_utf8": 394, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13824, "cached_input_tokens": 12672, "output_tokens": 438, "reasoning_output_tokens": 326}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..a1d5a09ce781277ea0654c8fd6560133b9842eb4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_3270342a5d16af73", + "api_calls": 0, + "input_tokens": 13824, + "cached_input_tokens": 12672, + "output_tokens": 438, + "total_tokens": 14262, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10051.4, + "sql_execution_elapsed_ms_total": 2.25, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5bd04f1573fb78a2f93750808f6a0e84304153e4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:01:59.129613+00:00", + "ended_at": "2026-05-19T16:02:09.181051+00:00", + "elapsed_ms": 10051.4, + "prompt_metrics": { + "chars": 5089, + "bytes_utf8": 5089, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 753, + "bytes_utf8": 753, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 394, + "bytes_utf8": 394, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13824, + "cached_input_tokens": 12672, + "output_tokens": 438, + "reasoning_output_tokens": 326 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..dff0be24c4b551384aca34aff9e2db3e4aca347e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role focused_target_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "IE", + "positive_value": "N", + "negative_value": "IE", + "top_k": 15, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..d878d221470127127aed1369fd39839596858ab9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-fa89-76e0-906e-bf6451b75d2c"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS \\\"condition_rate\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"condition_rate\\\" DESC;\",\"notes\":\"Uses the planned Grouped Condition Rate template with \\\"EI\\\" as both the grouping column and condition column, measuring the share of rows in each EI group where EI = 'IE'.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13824,"cached_input_tokens":12672,"output_tokens":438,"reasoning_output_tokens":326}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..6408c86e75ca06881a0f7d102b5667fa2ad3312d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS \"condition_rate\"\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY \"condition_rate\" DESC;","notes":"Uses the planned Grouped Condition Rate template with \"EI\" as both the grouping column and condition column, measuring the share of rows in each EI group where EI = 'IE'."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3270342a5d16af73/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..ee87ec09eaacbd7c3c8a9743bfc4cc79137e2a35 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4975, "bytes_utf8": 4975, "lines": 132, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 374, "bytes_utf8": 374, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13795, "cached_input_tokens": 12032, "output_tokens": 200, "reasoning_output_tokens": 91}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..c55533ffdca53318c0a0464a52957b1ace60ecb2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_3392b6384269fc20", + "api_calls": 0, + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 200, + "total_tokens": 13995, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10292.18, + "sql_execution_elapsed_ms_total": 2.63, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8c8b3329d06ffe4b2e741b8f756761adb9cb257d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:58:22.568543+00:00", + "ended_at": "2026-05-19T15:58:32.860749+00:00", + "elapsed_ms": 10292.18, + "prompt_metrics": { + "chars": 4975, + "bytes_utf8": 4975, + "lines": 132, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 732, + "bytes_utf8": 732, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 374, + "bytes_utf8": 374, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 200, + "reasoning_output_tokens": 91 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..21a926cf57822c6d4169e37de00742544c4d97c0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,132 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_distinct_topk", + "bindings": { + "group_col": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 14, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..3d192714d5c4fb5595acfcd8cd8f237e03adb08f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f5-ac6f-7a40-904a-0c20ae3a5be7"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_clickbench_group_distinct_topk\\nSELECT \\\"EI\\\", COUNT(DISTINCT \\\"ATRINS-DONOR-521\\\") AS distinct_entities\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY distinct_entities DESC\\nLIMIT 14;\",\"notes\":\"Applies the planned Top-k Groups by Distinct Entity Coverage template with group_col=\\\"EI\\\" and entity_col=\\\"ATRINS-DONOR-521\\\" on the single table \\\"c3\\\".\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13795,"cached_input_tokens":12032,"output_tokens":200,"reasoning_output_tokens":91}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..06da487292ead3a75c5bec00f97e2a836650543c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_clickbench_group_distinct_topk\nSELECT \"EI\", COUNT(DISTINCT \"ATRINS-DONOR-521\") AS distinct_entities\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY distinct_entities DESC\nLIMIT 14;","notes":"Applies the planned Top-k Groups by Distinct Entity Coverage template with group_col=\"EI\" and entity_col=\"ATRINS-DONOR-521\" on the single table \"c3\"."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3392b6384269fc20/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8df7067db5c8a6abe0f6307fa6908b58e31c458c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:06:23.891927+00:00", + "ended_at": "2026-05-19T16:06:26.560301+00:00", + "elapsed_ms": 2668.34, + "returncode": 1, + "prompt_metrics": { + "chars": 5178, + "bytes_utf8": 5178, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..234d32965286552f4898286e2714806863b81b5f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:06:27.563069+00:00", + "ended_at": "2026-05-19T16:06:31.393068+00:00", + "elapsed_ms": 3829.95, + "returncode": 1, + "prompt_metrics": { + "chars": 5178, + "bytes_utf8": 5178, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..5f14998955e478d22556b1152f29f5b2de484721 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "EI", + "top_k": 17, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..5f14998955e478d22556b1152f29f5b2de484721 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "EI", + "top_k": 17, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..96bad0bcd8c6529d4a16a28d96fb212b69535b87 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-0495-7f30-8b8b-2960d0509fce"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..4ed130c4d2d6ab509341d3f4af1adb09c85d748a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-0495-7f30-8b8b-2960d0509fce"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..62a6008946acdec530b6d034ad74feaa3bbb4cf1 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-12f9-7103-8448-4e2a1e2e0489"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..17302e2c98168a582610d4be52b03b81a1e2d677 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-12f9-7103-8448-4e2a1e2e0489"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3730d081d6071bd0/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..7b4bc5c05ef471bd50023e5e0c5a3b23e8131852 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4841, "bytes_utf8": 4841, "lines": 130, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 336, "bytes_utf8": 336, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13773, "cached_input_tokens": 12032, "output_tokens": 231, "reasoning_output_tokens": 137}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..06466732fdb313e764d09914eb19d216943739b3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_3cb89173791c5265", + "api_calls": 0, + "input_tokens": 13773, + "cached_input_tokens": 12032, + "output_tokens": 231, + "total_tokens": 14004, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7761.01, + "sql_execution_elapsed_ms_total": 1.15, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..106d93beccb5b236720b2ccff7ce2b031ab32d8d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:03:44.541561+00:00", + "ended_at": "2026-05-19T16:03:52.302594+00:00", + "elapsed_ms": 7761.01, + "prompt_metrics": { + "chars": 4841, + "bytes_utf8": 4841, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 689, + "bytes_utf8": 689, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 336, + "bytes_utf8": 336, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13773, + "cached_input_tokens": 12032, + "output_tokens": 231, + "reasoning_output_tokens": 137 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..a7c20c49104b6a82f023cde8418b017fab6c8b3b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_mass_similarity with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 14, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..57ee23fedd371a485d247d715435978a3c6e1c29 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fa-961c-7bd0-88a7-573464e0c7d9"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_low_support_group_count_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY support ASC, \\\"EI\\\"\\nLIMIT 14;\",\"notes\":\"Applies the Low-Support Group Count template with group_col bound to \\\"EI\\\", counting rows per class label and ordering from lowest to highest support.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13773,"cached_input_tokens":12032,"output_tokens":231,"reasoning_output_tokens":137}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e8e3a2eecc2f5d3e80728cc275a9477cc909e7da --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_low_support_group_count_v2\nSELECT\n \"EI\",\n COUNT(*) AS support\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY support ASC, \"EI\"\nLIMIT 14;","notes":"Applies the Low-Support Group Count template with group_col bound to \"EI\", counting rows per class label and ordering from lowest to highest support."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..bb3a959ce01eade159c7b4e8e75ca61c0f8e74ba --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Low-Support Group Count to probe tail_mass_similarity with semantic role count_distribution. Focus on group_col=EI. +Result preview: [{"EI": "EI", "support": 766}, {"EI": "IE", "support": 768}, {"EI": "N", "support": 1655}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..fd3f25362a8996829b49f7f7a2adc3f63a48c51e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/generated_sql.sql @@ -0,0 +1,20 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: tail_rarity_structure +-- canonical_subitem_id: tail_mass_similarity +-- intended_facet_id: tail_ranked_signal +-- variant_semantic_role: count_distribution +-- template_id: tpl_tail_low_support_group_count_v2 +-- query_record_id: v2q_c3_3cb89173791c5265 +-- problem_id: v2p_c3_483960bec32310c9 +-- realization_mode: agent +-- source_kind: agent +SELECT + "EI", + COUNT(*) AS support +FROM "c3" +GROUP BY "EI" +ORDER BY support ASC, "EI" +LIMIT 14; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..fa85d8895e539e1cdfab023af9151ab9908a91c2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 1, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_tail_low_support_group_count_v2\nSELECT\n \"EI\",\n COUNT(*) AS support\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY support ASC, \"EI\"\nLIMIT 14;", "result": "{\"query\": \"-- template_id: tpl_tail_low_support_group_count_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY support ASC, \\\"EI\\\"\\nLIMIT 14;\", \"columns\": [\"EI\", \"support\"], \"rows\": [{\"EI\": \"EI\", \"support\": 766}, {\"EI\": \"IE\", \"support\": 768}, {\"EI\": \"N\", \"support\": 1655}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 1.15}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..5ae6456e2e3c9800faaf92fba2a29f3f9c13e603 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/run_manifest.json @@ -0,0 +1,87 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:03:44.540452+00:00", + "ended_at": "2026-05-19T16:03:52.305584+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_3cb89173791c5265", + "problem_id": "v2p_c3_483960bec32310c9", + "dataset_id": "c3", + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "family_id": "tail_rarity_structure", + "canonical_subitem_id": "tail_mass_similarity", + "intended_facet_id": "tail_ranked_signal", + "variant_semantic_role": "count_distribution", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Low-Support Group Count to probe tail_mass_similarity with semantic role count_distribution. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "top_k": 14, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "notes": [ + "default_facets=tail_ranked_signal", + "template_selection_mode=rule", + "problem_index_within_template=2", + "sql_variant_index=1/2", + "binding_index=49" + ], + "template_selection_mode": "rule", + "selected_template_rank": 5, + "problem_index_within_template": 2, + "sql_variant_index": 1, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_3cb89173791c5265.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_3cb89173791c5265", + "api_calls": 0, + "input_tokens": 13773, + "cached_input_tokens": 12032, + "output_tokens": 231, + "total_tokens": 14004, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7761.01, + "sql_execution_elapsed_ms_total": 1.15, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..69682fe13ab231402d892645c107780a73767760 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/trace.jsonl @@ -0,0 +1 @@ +{"timestamp": "2026-05-19T16:03:52.303298+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 7761.01, "started_at": "2026-05-19T16:03:44.541561+00:00", "ended_at": "2026-05-19T16:03:52.302594+00:00", "prompt_metrics": {"chars": 4841, "bytes_utf8": 4841, "lines": 130, "estimated_tokens": null}, "response_metrics": {"chars": 336, "bytes_utf8": 336, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13773, "cached_input_tokens": 12032, "output_tokens": 231, "reasoning_output_tokens": 137}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_tail_low_support_group_count_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY support ASC, \\\"EI\\\"\\nLIMIT 14;\",\"notes\":\"Applies the Low-Support Group Count template with group_col bound to \\\"EI\\\", counting rows per class label and ordering from lowest to highest support.\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3cb89173791c5265/usage_summary.json 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"assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "status": "failed", "error": "AI CLI command failed with exit code 1: "} +{"attempt": 2, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_2.txt", "metrics": {"chars": 5085, "bytes_utf8": 5085, "lines": 135, "estimated_tokens": null}} +{"attempt": 2, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_2.txt", "raw_content_path": "cli/sql_response_attempt_2.raw.txt", "stderr_path": "cli/sql_stderr_attempt_2.txt", "metrics": {"chars": 410, "bytes_utf8": 410, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13825, "cached_input_tokens": 12032, "output_tokens": 276, "reasoning_output_tokens": 162}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..6e16b50e4da41f7d58f4acb6d3e39cda150639fc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 2, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_3e4a075bddfde5de", + "api_calls": 0, + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 276, + "total_tokens": 14101, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 11853.58, + "sql_execution_elapsed_ms_total": 1.5, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e425c7d5ab68ed66e8d75a293e7558b45b4700fd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:00:56.892489+00:00", + "ended_at": "2026-05-19T16:01:00.306384+00:00", + "elapsed_ms": 3413.86, + "returncode": 1, + "prompt_metrics": { + "chars": 5085, + "bytes_utf8": 5085, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..098dedaa52b7c44fb2c360031d6cce4e59a358e4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_attempt_2.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:01:01.308311+00:00", + "ended_at": "2026-05-19T16:01:09.748082+00:00", + "elapsed_ms": 8439.72, + "prompt_metrics": { + "chars": 5085, + "bytes_utf8": 5085, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 761, + "bytes_utf8": 761, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 410, + "bytes_utf8": 410, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 276, + "reasoning_output_tokens": 162 + } + }, + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..d9e3c2b68491d52bd032c274203ec6ab6451e49a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe direction_consistency with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "IE", + "positive_value": "N", + "negative_value": "IE", + "top_k": 17, + "top_n": 7, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..d9e3c2b68491d52bd032c274203ec6ab6451e49a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe direction_consistency with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "IE", + "positive_value": "N", + "negative_value": "IE", + "top_k": 17, + "top_n": 7, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..8122eea7d6754f9a8cd3117e92e0ba81e8fbcbcd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-0774-71f1-953f-3c821742f3ad"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..04ae6b27cc199ac2cbbe28025bd52da622968926 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-0774-71f1-953f-3c821742f3ad"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..6f1bcc1305b37705e48b2ba350263215a961db67 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-18a4-7c22-ba30-af28fe5cfd19"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Uses the planned Grouped Condition Rate template with group_col and condition_col both bound to \\\"EI\\\". This measures, for each EI label group, the within-group proportion of rows where EI = 'IE'.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13825,"cached_input_tokens":12032,"output_tokens":276,"reasoning_output_tokens":162}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..701b45ef22c9a6e36d8903cb4bfe255c91e81ada --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_response_attempt_2.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;","notes":"Uses the planned Grouped Condition Rate template with group_col and condition_col both bound to \"EI\". This measures, for each EI label group, the within-group proportion of rows where EI = 'IE'."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..261fb0371c0b3d87f282ee18d4d9df0587513c67 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Grouped Condition Rate to probe direction_consistency with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI. +Result preview: [{"EI": "IE", "condition_rate": 1.0}, {"EI": "N", "condition_rate": 0.0}, {"EI": "EI", "condition_rate": 0.0}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..3a5456443399dfa75e7e9139ed74e2b952810aed --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/generated_sql.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: conditional_dependency_structure +-- canonical_subitem_id: direction_consistency +-- intended_facet_id: conditional_rate_shift +-- variant_semantic_role: within_group_proportion +-- template_id: tpl_m4_group_condition_rate +-- query_record_id: v2q_c3_3e4a075bddfde5de +-- problem_id: v2p_c3_553355996213229d +-- realization_mode: agent +-- source_kind: agent +SELECT "EI", + AVG(CASE WHEN "EI" = 'IE' THEN 1 ELSE 0 END) AS condition_rate +FROM "c3" +GROUP BY "EI" +ORDER BY condition_rate DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..520b6bbaa05d9fbbf76bcbe1d2d4a437e46ab0c5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 2, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;", "result": "{\"query\": \"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\", \"columns\": [\"EI\", \"condition_rate\"], \"rows\": [{\"EI\": \"IE\", \"condition_rate\": 1.0}, {\"EI\": \"N\", \"condition_rate\": 0.0}, {\"EI\": \"EI\", \"condition_rate\": 0.0}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 1.5}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..e20cf7385819dfb24f0f80bbcd658e378f800ae2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/run_manifest.json @@ -0,0 +1,92 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:00:56.890647+00:00", + "ended_at": "2026-05-19T16:01:09.751819+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_3e4a075bddfde5de", + "problem_id": "v2p_c3_553355996213229d", + "dataset_id": "c3", + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "family_id": "conditional_dependency_structure", + "canonical_subitem_id": "direction_consistency", + "intended_facet_id": "conditional_rate_shift", + "variant_semantic_role": "within_group_proportion", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Grouped Condition Rate to probe direction_consistency with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "IE", + "positive_value": "N", + "negative_value": "IE", + "top_k": 17, + "top_n": 7, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "condition_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "notes": [ + "default_facets=conditional_rate_shift", + "template_selection_mode=rule", + "problem_index_within_template=4", + "sql_variant_index=2/2", + "binding_index=27" + ], + "template_selection_mode": "rule", + "selected_template_rank": 3, + "problem_index_within_template": 4, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_3e4a075bddfde5de.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_3e4a075bddfde5de", + "api_calls": 0, + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 276, + "total_tokens": 14101, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 11853.58, + "sql_execution_elapsed_ms_total": 1.5, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..4a42a6f083238ad545056cc8c532b9da002eb316 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:01:00.307102+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3413.86, "started_at": "2026-05-19T16:00:56.892489+00:00", "ended_at": "2026-05-19T16:01:00.306384+00:00", "prompt_metrics": {"chars": 5085, "bytes_utf8": 5085, "lines": 135, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40f8-0774-71f1-953f-3c821742f3ad\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:01:09.748909+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 8439.72, "started_at": "2026-05-19T16:01:01.308311+00:00", "ended_at": "2026-05-19T16:01:09.748082+00:00", "prompt_metrics": {"chars": 5085, "bytes_utf8": 5085, "lines": 135, "estimated_tokens": null}, "response_metrics": {"chars": 410, "bytes_utf8": 410, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13825, "cached_input_tokens": 12032, "output_tokens": 276, "reasoning_output_tokens": 162}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Uses the planned Grouped Condition Rate template with group_col and condition_col both bound to \\\"EI\\\". This measures, for each EI label group, the within-group proportion of rows where EI = 'IE'.\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..e4dac2f25b2eb255c1be75bdd2835061d558fdeb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/usage_summary.json @@ -0,0 +1,20 @@ +{ + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_3e4a075bddfde5de", + "api_calls": 0, + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 276, + "total_tokens": 14101, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 11853.58, + "sql_execution_elapsed_ms_total": 1.5, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_3e4a075bddfde5de/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a868fb65b24b7a09f0628a62cf9caa4921b89f71 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:50.348790+00:00", + "ended_at": "2026-05-19T16:08:54.306743+00:00", + "elapsed_ms": 3957.93, + "returncode": 1, + "prompt_metrics": { + "chars": 5032, + "bytes_utf8": 5032, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a4ff894940e01865e9b156d55569c6d6f7794f81 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:55.308564+00:00", + "ended_at": "2026-05-19T16:08:58.611182+00:00", + "elapsed_ms": 3302.58, + "returncode": 1, + "prompt_metrics": { + "chars": 5032, + "bytes_utf8": 5032, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..8e1feb4f99d2f4ee1f6bc8014a89c64b36ef60ae --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 15, + "top_n": 7, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..8e1feb4f99d2f4ee1f6bc8014a89c64b36ef60ae --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 15, + "top_n": 7, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..3e92ee3685f1d27b2f22db5b2e517ae2800b8d68 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-40b4-7d80-9646-a2bc24aacc47"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..5372d006725bd4e67aced406ee56e2202045e6ee --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-40b4-7d80-9646-a2bc24aacc47"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..5cbfa5d981f905a37316ed01af682b65458b91e6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-5407-7752-974f-ef0fb2fcaafe"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..ad384277cb456255fbe07096ed2bb179b74aa2df --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-5407-7752-974f-ef0fb2fcaafe"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..1b4de1224288b699eba3aad297ae7caaca026627 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/run_manifest.json @@ -0,0 +1,71 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:08:50.347747+00:00", + "ended_at": "2026-05-19T16:08:58.611915+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_44dbde5785f100e0", + "problem_id": "v2p_c3_40ad1f3cad9d4a5d", + "dataset_id": "c3", + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "family_id": "subgroup_structure", + "canonical_subitem_id": "subgroup_size_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "count_distribution", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 15, + "top_n": 7, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift", + "template_selection_mode=rule", + "problem_index_within_template=4", + "sql_variant_index=2/2", + "binding_index=75" + ], + "template_selection_mode": "rule", + "selected_template_rank": 7, + "problem_index_within_template": 4, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..e97a1667e63b718ccd470dbae5e7d663d9a7d6f0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_44dbde5785f100e0/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:08:54.307504+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3957.93, "started_at": "2026-05-19T16:08:50.348790+00:00", "ended_at": "2026-05-19T16:08:54.306743+00:00", "prompt_metrics": {"chars": 5032, "bytes_utf8": 5032, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40ff-40b4-7d80-9646-a2bc24aacc47\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:08:58.611830+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3302.58, "started_at": "2026-05-19T16:08:55.308564+00:00", "ended_at": "2026-05-19T16:08:58.611182+00:00", "prompt_metrics": {"chars": 5032, "bytes_utf8": 5032, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40ff-5407-7752-974f-ef0fb2fcaafe\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..5075feb512ae54789c1fd4c6110b90892576c11b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/conversation.jsonl @@ -0,0 +1,4 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4762, "bytes_utf8": 4762, "lines": 130, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "status": "failed", "error": "AI CLI command failed with exit code 1: "} +{"attempt": 2, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_2.txt", "metrics": {"chars": 4762, "bytes_utf8": 4762, "lines": 130, "estimated_tokens": null}} +{"attempt": 2, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_2.txt", "raw_content_path": "cli/sql_response_attempt_2.raw.txt", "stderr_path": "cli/sql_stderr_attempt_2.txt", "metrics": {"chars": 259, "bytes_utf8": 259, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13738, "cached_input_tokens": 12672, "output_tokens": 148, "reasoning_output_tokens": 79}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..ca91bdec12e616b264089770c50c53137d72d3f2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 2, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_4514347325614638", + "api_calls": 0, + "input_tokens": 13738, + "cached_input_tokens": 12672, + "output_tokens": 148, + "total_tokens": 13886, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10469.19, + "sql_execution_elapsed_ms_total": 1.15, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1c662081eee284fd999cee3e67328211830b4f93 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:59:37.529542+00:00", + "ended_at": "2026-05-19T15:59:40.739094+00:00", + "elapsed_ms": 3209.53, + "returncode": 1, + "prompt_metrics": { + "chars": 4762, + "bytes_utf8": 4762, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..65baa51c4f7f7047757f7b31105beca05960cfe0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_attempt_2.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:59:41.741144+00:00", + "ended_at": "2026-05-19T15:59:49.000858+00:00", + "elapsed_ms": 7259.66, + "prompt_metrics": { + "chars": 4762, + "bytes_utf8": 4762, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 604, + "bytes_utf8": 604, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 259, + "bytes_utf8": 259, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13738, + "cached_input_tokens": 12672, + "output_tokens": 148, + "reasoning_output_tokens": 79 + } + }, + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..dd06e4912ed81bc720e580c3da6fffc6d19333b7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_count", + "template_name": "Grouped Count by Category", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_count", + "bindings": { + "group_col": "EI", + "top_k": 13, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..dd06e4912ed81bc720e580c3da6fffc6d19333b7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_count", + "template_name": "Grouped Count by Category", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_count", + "bindings": { + "group_col": "EI", + "top_k": 13, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..ba6b7e20d8944b47dbeb2a120b44d1e1484777bd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-d132-7901-a98f-052a5ba63a12"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..42fc0ded1d24653dcfd57b317459e0d36f79c87e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-d132-7901-a98f-052a5ba63a12"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..3b39d90860aeda178a48d1185f797767411fa4fa --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-e1c5-7d33-b43b-6ed611596f57"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_clickbench_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS row_count\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY row_count DESC;\",\"notes\":\"Grouped count by the target category \\\"EI\\\" using the provided template to inspect class distribution.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13738,"cached_input_tokens":12672,"output_tokens":148,"reasoning_output_tokens":79}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..7db0050db87b345d7f96a376617751d365113d86 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_response_attempt_2.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_clickbench_group_count\nSELECT \"EI\", COUNT(*) AS row_count\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY row_count DESC;","notes":"Grouped count by the target category \"EI\" using the provided template to inspect class distribution."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4514347325614638/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e89154347da6b1ca6141278ef32a857b6ecd2e9e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:07:28.448572+00:00", + "ended_at": "2026-05-19T16:07:31.640395+00:00", + "elapsed_ms": 3191.8, + "returncode": 1, + "prompt_metrics": { + "chars": 5177, + "bytes_utf8": 5177, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f906e4accbeec81205f836efcde8d61e5f36dca3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:07:32.641894+00:00", + "ended_at": "2026-05-19T16:07:35.779773+00:00", + "elapsed_ms": 3137.85, + "returncode": 1, + "prompt_metrics": { + "chars": 5177, + "bytes_utf8": 5177, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..9640d7a30ef12d7f08341403bd96c1dc7fd4b6b3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "N", + "top_k": 16, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..9640d7a30ef12d7f08341403bd96c1dc7fd4b6b3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "N", + "top_k": 16, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..5acc326acfe94d06d316546f91f9a619e2ee345e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-00bd-7e10-8ceb-5ba1eb7acc10"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..16fe085978b4430ad7d63d0938cfd3d94a8c6b8f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-00bd-7e10-8ceb-5ba1eb7acc10"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..6af6dc73ad2600d858f2f97d96020bf8a8ba3de1 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-1134-7a91-a309-fd05d049795c"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..6abaac55d55bffee510582fb93ee135ba9a39828 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-1134-7a91-a309-fd05d049795c"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_451d232e9baa3a3b/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e087ad1c5f4712145052706837da527ca1fae2f2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:26.700053+00:00", + "ended_at": "2026-05-19T16:09:29.992171+00:00", + "elapsed_ms": 3292.09, + "returncode": 1, + "prompt_metrics": { + "chars": 5029, + "bytes_utf8": 5029, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c4827545e36656c74684a815d358bf27fac26efa --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:30.994247+00:00", + "ended_at": "2026-05-19T16:09:33.850217+00:00", + "elapsed_ms": 2855.93, + "returncode": 1, + "prompt_metrics": { + "chars": 5029, + "bytes_utf8": 5029, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..c46bbfd5c609ca271f2f8477c8ddd04a1e24604e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 13, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..c46bbfd5c609ca271f2f8477c8ddd04a1e24604e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 13, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..371e67f42e16a2a14351ef11366047c2593170d0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-ceb2-7cb3-a4ac-3eeaf8d48b58"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..3a8ecb3f879ab73d71eaa4e3695643cbbf3e356f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-ceb2-7cb3-a4ac-3eeaf8d48b58"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..4a6d4a6850f4be0b115f16383f6295d6b3b6d322 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-dfb2-7a92-89db-8e54cf626f45"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..f30eff2c8bceccfebeda3b40acb36ec39ecaa17c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-dfb2-7a92-89db-8e54cf626f45"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4608e40b52b610d6/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..000e60c3d04eedf9c34aab6a53c591d9b85fd1f1 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:06:46.180980+00:00", + "ended_at": "2026-05-19T16:06:49.637970+00:00", + "elapsed_ms": 3456.87, + "returncode": 1, + "prompt_metrics": { + "chars": 5178, + "bytes_utf8": 5178, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..db69babf8856eb27cd08ee5515fcaaf92ac5a0b8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:06:50.639356+00:00", + "ended_at": "2026-05-19T16:06:53.641078+00:00", + "elapsed_ms": 3001.69, + "returncode": 1, + "prompt_metrics": { + "chars": 5178, + "bytes_utf8": 5178, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e123db3f3590cc3bdedb5c073288638b3e990d43 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "IE", + "top_k": 14, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e123db3f3590cc3bdedb5c073288638b3e990d43 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "IE", + "top_k": 14, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..fb271b2c951d43be9240225d6ffe0c5dd88fb9c4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-5b94-7882-9000-3443aaa37f48"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..aa387b319b1620f6aa3d809e953c4e51c915e4fb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-5b94-7882-9000-3443aaa37f48"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..5d0b422761b282b4b3e30a4eec1ff7b0cd7cccc0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-6d16-71b2-8daf-c4fdffd5d749"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..d8ea9ac8f35b95f301bfee34a6da774c10ae487b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-6d16-71b2-8daf-c4fdffd5d749"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_463dd3610b75b268/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..5510b66c5204b078464fb6cae3ed6e428a18fea4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5077, "bytes_utf8": 5077, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 444, "bytes_utf8": 444, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13824, "cached_input_tokens": 12288, "output_tokens": 369, "reasoning_output_tokens": 248}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..b0813b43d650ddd8001c9f48983485e18e6bfea0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_495e39826d17b5ab", + "api_calls": 0, + "input_tokens": 13824, + "cached_input_tokens": 12288, + "output_tokens": 369, + "total_tokens": 14193, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 8940.86, + "sql_execution_elapsed_ms_total": 1.17, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..cecae318d0ab5b520ccf9256515cf0ca2e55a687 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:00:11.614437+00:00", + "ended_at": "2026-05-19T16:00:20.555328+00:00", + "elapsed_ms": 8940.86, + "prompt_metrics": { + "chars": 5077, + "bytes_utf8": 5077, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 807, + "bytes_utf8": 807, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 444, + "bytes_utf8": 444, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13824, + "cached_input_tokens": 12288, + "output_tokens": 369, + "reasoning_output_tokens": 248 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..620ce786179db420699357a693923d192965769a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe direction_consistency with semantic role focused_target_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 10, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..37cd3ebd02afc146e2997d8da61a215b19540587 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f7-5677-7291-b05a-a6511e20f41d"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS \\\"condition_rate\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"condition_rate\\\" DESC;\",\"notes\":\"Uses the required Grouped Condition Rate template with group_col=\\\"EI\\\" and condition_col=\\\"EI\\\". Because the grouping and condition columns are the same, this measures the share of rows labeled 'N' within each label group.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13824,"cached_input_tokens":12288,"output_tokens":369,"reasoning_output_tokens":248}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..48ce4ce5ef8ffbc00445e2d76176ddd7e2e47b5c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS \"condition_rate\"\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY \"condition_rate\" DESC;","notes":"Uses the required Grouped Condition Rate template with group_col=\"EI\" and condition_col=\"EI\". Because the grouping and condition columns are the same, this measures the share of rows labeled 'N' within each label group."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..b46a9fb0f59490a7419a69ccc3cf90e63ff51aaa --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/generated_sql.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: conditional_dependency_structure +-- canonical_subitem_id: direction_consistency +-- intended_facet_id: conditional_rate_shift +-- variant_semantic_role: focused_target_view +-- template_id: tpl_m4_group_condition_rate +-- query_record_id: v2q_c3_495e39826d17b5ab +-- problem_id: v2p_c3_d844fae11fd31323 +-- realization_mode: agent +-- source_kind: agent +SELECT "EI", + AVG(CASE WHEN "EI" = 'N' THEN 1 ELSE 0 END) AS "condition_rate" +FROM "c3" +GROUP BY "EI" +ORDER BY "condition_rate" DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..1aa84c8739c7d3d87c6818fdb781db4b0a716c82 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/run_manifest.json @@ -0,0 +1,92 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:00:11.612701+00:00", + "ended_at": "2026-05-19T16:00:20.558511+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_495e39826d17b5ab", + "problem_id": "v2p_c3_d844fae11fd31323", + "dataset_id": "c3", + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "family_id": "conditional_dependency_structure", + "canonical_subitem_id": "direction_consistency", + "intended_facet_id": "conditional_rate_shift", + "variant_semantic_role": "focused_target_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Grouped Condition Rate to probe direction_consistency with semantic role focused_target_view. Focus on group_col=EI, condition_col=EI.", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 10, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "condition_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "notes": [ + "default_facets=conditional_rate_shift", + "template_selection_mode=rule", + "problem_index_within_template=2", + "sql_variant_index=1/2", + "binding_index=25" + ], + "template_selection_mode": "rule", + "selected_template_rank": 3, + "problem_index_within_template": 2, + "sql_variant_index": 1, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_495e39826d17b5ab.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_495e39826d17b5ab", + "api_calls": 0, + "input_tokens": 13824, + "cached_input_tokens": 12288, + "output_tokens": 369, + "total_tokens": 14193, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 8940.86, + "sql_execution_elapsed_ms_total": 1.17, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..a2a0e2d46e2420570485310cb9fc22c34a7aaec3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/usage_summary.json @@ -0,0 +1,20 @@ +{ + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_495e39826d17b5ab", + "api_calls": 0, + "input_tokens": 13824, + "cached_input_tokens": 12288, + "output_tokens": 369, + "total_tokens": 14193, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 8940.86, + "sql_execution_elapsed_ms_total": 1.17, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_495e39826d17b5ab/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..891a0434591fc41f40700d8070487bd1a48f6b6e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/conversation.jsonl @@ -0,0 +1,4 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4976, "bytes_utf8": 4976, "lines": 132, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "status": "failed", "error": "AI CLI command failed with exit code 1: "} +{"attempt": 2, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_2.txt", "metrics": {"chars": 4976, "bytes_utf8": 4976, "lines": 132, "estimated_tokens": null}} +{"attempt": 2, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_2.txt", "raw_content_path": "cli/sql_response_attempt_2.raw.txt", "stderr_path": "cli/sql_stderr_attempt_2.txt", "metrics": {"chars": 356, "bytes_utf8": 356, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13795, "cached_input_tokens": 12032, "output_tokens": 318, "reasoning_output_tokens": 214}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..ea5ed9447c131ca8e7abb87612fce6a9148cca10 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 2, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_4cf9d39c49823cd8", + "api_calls": 0, + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 318, + "total_tokens": 14113, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10775.61, + "sql_execution_elapsed_ms_total": 5.33, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8d718a2fa7007e91ace9310ba080e2e27b078822 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:58:32.867496+00:00", + "ended_at": "2026-05-19T15:58:35.811339+00:00", + "elapsed_ms": 2943.82, + "returncode": 1, + "prompt_metrics": { + "chars": 4976, + "bytes_utf8": 4976, + "lines": 132, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..95c53c96b980390d7df83f644466034849317338 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_attempt_2.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:58:36.812680+00:00", + "ended_at": "2026-05-19T15:58:44.644511+00:00", + "elapsed_ms": 7831.79, + "prompt_metrics": { + "chars": 4976, + "bytes_utf8": 4976, + "lines": 132, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 719, + "bytes_utf8": 719, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 356, + "bytes_utf8": 356, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 318, + "reasoning_output_tokens": 214 + } + }, + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..179da76d3a5957a2fc2782af5bf52571aa8be0fa --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,132 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_distinct_topk", + "bindings": { + "group_col": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 19, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..179da76d3a5957a2fc2782af5bf52571aa8be0fa --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,132 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_distinct_topk", + "bindings": { + "group_col": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 19, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..4351ef5b1e6f6ff79b746eddc49d35277dc8e319 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f5-d4c8-74a3-93e1-21a834b16f57"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..20d6f02e013a838da3e8ead3289a5880c70337fc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f5-d4c8-74a3-93e1-21a834b16f57"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..f7bc9f5873bd2b5932473ffd3bed3a116117b97c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f5-e42a-7ee2-9571-f567e8c32325"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_clickbench_group_distinct_topk\\nSELECT \\\"EI\\\", COUNT(DISTINCT \\\"ATRINS-DONOR-521\\\") AS \\\"distinct_entities\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"distinct_entities\\\" DESC\\nLIMIT 19;\",\"notes\":\"Applied the provided Top-k Groups by Distinct Entity Coverage template with group_col=\\\"EI\\\" and entity_col=\\\"ATRINS-DONOR-521\\\".\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13795,"cached_input_tokens":12032,"output_tokens":318,"reasoning_output_tokens":214}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e971e59784376eb0a557a0c15021d2e8c760a7d8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_response_attempt_2.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_clickbench_group_distinct_topk\nSELECT \"EI\", COUNT(DISTINCT \"ATRINS-DONOR-521\") AS \"distinct_entities\"\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY \"distinct_entities\" DESC\nLIMIT 19;","notes":"Applied the provided Top-k Groups by Distinct Entity Coverage template with group_col=\"EI\" and entity_col=\"ATRINS-DONOR-521\"."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..54fcff1e7be37ee70756225c92f9a452bb52699f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI. +Result preview: [{"EI": "N", "distinct_entities": 1655}, {"EI": "IE", "distinct_entities": 762}, {"EI": "EI", "distinct_entities": 760}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..68905a40ce78960004c452daff19f796f67586ce --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/generated_sql.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_conditional_contrast +-- variant_semantic_role: ranked_signal_view +-- template_id: tpl_clickbench_group_distinct_topk +-- query_record_id: v2q_c3_4cf9d39c49823cd8 +-- problem_id: v2p_c3_4e6327cd5bb919a0 +-- realization_mode: agent +-- source_kind: agent +SELECT "EI", COUNT(DISTINCT "ATRINS-DONOR-521") AS "distinct_entities" +FROM "c3" +GROUP BY "EI" +ORDER BY "distinct_entities" DESC +LIMIT 19; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..a2504a4834eba7819a11a252079e09496651f057 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 2, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_clickbench_group_distinct_topk\nSELECT \"EI\", COUNT(DISTINCT \"ATRINS-DONOR-521\") AS \"distinct_entities\"\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY \"distinct_entities\" DESC\nLIMIT 19;", "result": "{\"query\": \"-- template_id: tpl_clickbench_group_distinct_topk\\nSELECT \\\"EI\\\", COUNT(DISTINCT \\\"ATRINS-DONOR-521\\\") AS \\\"distinct_entities\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"distinct_entities\\\" DESC\\nLIMIT 19;\", \"columns\": [\"EI\", \"distinct_entities\"], \"rows\": [{\"EI\": \"N\", \"distinct_entities\": 1655}, {\"EI\": \"IE\", \"distinct_entities\": 762}, {\"EI\": \"EI\", \"distinct_entities\": 760}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 5.33}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..0575a31329b4b99ffe3acfbabb477bb69fd853fb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/run_manifest.json @@ -0,0 +1,89 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T15:58:32.866178+00:00", + "ended_at": "2026-05-19T15:58:44.654803+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_4cf9d39c49823cd8", + "problem_id": "v2p_c3_4e6327cd5bb919a0", + "dataset_id": "c3", + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "family_id": "subgroup_structure", + "canonical_subitem_id": "internal_profile_stability", + "intended_facet_id": "subgroup_conditional_contrast", + "variant_semantic_role": "ranked_signal_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "support", + "extended_family": false, + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 19, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "entity_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift,subgroup_rank_order,subgroup_conditional_contrast", + "template_selection_mode=rule", + "problem_index_within_template=5", + "sql_variant_index=2/2", + "binding_index=4" + ], + "template_selection_mode": "rule", + "selected_template_rank": 1, + "problem_index_within_template": 5, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_4cf9d39c49823cd8.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_4cf9d39c49823cd8", + "api_calls": 0, + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 318, + "total_tokens": 14113, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10775.61, + "sql_execution_elapsed_ms_total": 5.33, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..210d275844943094611f26c3aa47ac98d1b2353e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T15:58:35.811973+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 2943.82, "started_at": "2026-05-19T15:58:32.867496+00:00", "ended_at": "2026-05-19T15:58:35.811339+00:00", "prompt_metrics": {"chars": 4976, "bytes_utf8": 4976, "lines": 132, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40f5-d4c8-74a3-93e1-21a834b16f57\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T15:58:44.646061+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 7831.79, "started_at": "2026-05-19T15:58:36.812680+00:00", "ended_at": "2026-05-19T15:58:44.644511+00:00", "prompt_metrics": {"chars": 4976, "bytes_utf8": 4976, "lines": 132, "estimated_tokens": null}, "response_metrics": {"chars": 356, "bytes_utf8": 356, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13795, "cached_input_tokens": 12032, "output_tokens": 318, "reasoning_output_tokens": 214}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_clickbench_group_distinct_topk\\nSELECT \\\"EI\\\", COUNT(DISTINCT \\\"ATRINS-DONOR-521\\\") AS \\\"distinct_entities\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"distinct_entities\\\" DESC\\nLIMIT 19;\",\"notes\":\"Applied the provided Top-k Groups by Distinct Entity Coverage template with group_col=\\\"EI\\\" and entity_col=\\\"ATRINS-DONOR-521\\\".\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..ee9238524b30dac447261a2921774a3d730db645 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/usage_summary.json @@ -0,0 +1,20 @@ +{ + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_4cf9d39c49823cd8", + "api_calls": 0, + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 318, + "total_tokens": 14113, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10775.61, + "sql_execution_elapsed_ms_total": 5.33, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4cf9d39c49823cd8/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5082059bd3bdaeb7a50e63fc6d2d35826bc657b6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:11:19.219084+00:00", + "ended_at": "2026-05-19T16:11:21.963270+00:00", + "elapsed_ms": 2744.16, + "returncode": 1, + "prompt_metrics": { + "chars": 5224, + "bytes_utf8": 5224, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..734f7bdac6b403e68a776440fec51a07d5a5e550 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:11:22.964776+00:00", + "ended_at": "2026-05-19T16:11:26.087865+00:00", + "elapsed_ms": 3123.06, + "returncode": 1, + "prompt_metrics": { + "chars": 5224, + "bytes_utf8": 5224, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..bb2b10a1257727e562496b7209b533a304c65ea0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 11, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..bb2b10a1257727e562496b7209b533a304c65ea0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 11, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..31c357b90d578b9b72367bf076cff11930c27cfb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-8638-7b73-b536-67c8858612f4"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..f3b39aa6a3e99087ac20f8baa2e0d1c354e68337 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-8638-7b73-b536-67c8858612f4"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..9740735a20e7e58083bab7428512816f02378bab --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-94e4-7183-8551-309fe7a9ab30"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..1fce37c303902c9bc3926193038190f7fa2059e0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-94e4-7183-8551-309fe7a9ab30"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4e56a1821acf1e3d/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..748e954395c8b397058eb8e088a06029f2a631c2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:55.564174+00:00", + "ended_at": "2026-05-19T16:09:58.555169+00:00", + "elapsed_ms": 2990.97, + "returncode": 1, + "prompt_metrics": { + "chars": 5182, + "bytes_utf8": 5182, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5702a49b0478be761430e92e8649c526c8ea33fb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:59.556692+00:00", + "ended_at": "2026-05-19T16:10:02.459588+00:00", + "elapsed_ms": 2902.86, + "returncode": 1, + "prompt_metrics": { + "chars": 5182, + "bytes_utf8": 5182, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..b9ffe8ea01ea9f66592244b1c353888317574e4b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "entity_col": "ATRINS-DONOR-521", + "top_k": 14, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..b9ffe8ea01ea9f66592244b1c353888317574e4b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "entity_col": "ATRINS-DONOR-521", + "top_k": 14, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..88891c51777b26051a3a58a900ff835cb1bce701 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-3f85-7d63-b10c-f9a592c430a8"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..6f3655ee8886f0d9362592bcce69b974a492ab33 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-3f85-7d63-b10c-f9a592c430a8"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..deb6374279781f536786ed76dfd227b89cd5b4cf --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-4f01-73c1-9335-cb7d7e2c6196"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..0727bbffb441f787d358d9affb5b3b40055f6535 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-4f01-73c1-9335-cb7d7e2c6196"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_4ffcb32d0c42bffe/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..1e79e689b9a7507736a1daaa999010f70c425f1f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4843, "bytes_utf8": 4843, "lines": 130, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 271, "bytes_utf8": 271, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13775, "cached_input_tokens": 12672, "output_tokens": 185, "reasoning_output_tokens": 99}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..89bc4039696116b7c494567683f732cf5fd6d85a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_5154b8df2a5356cf", + "api_calls": 0, + "input_tokens": 13775, + "cached_input_tokens": 12672, + "output_tokens": 185, + "total_tokens": 13960, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 6910.38, + "sql_execution_elapsed_ms_total": 1.2, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c20671055ebd23e7088996749cb61973ad3c4f92 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:03:52.306806+00:00", + "ended_at": "2026-05-19T16:03:59.217212+00:00", + "elapsed_ms": 6910.38, + "prompt_metrics": { + "chars": 4843, + "bytes_utf8": 4843, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 623, + "bytes_utf8": 623, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 271, + "bytes_utf8": 271, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13775, + "cached_input_tokens": 12672, + "output_tokens": 185, + "reasoning_output_tokens": 99 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..ce22551d36bc554abaf3c7e65c6daba6f8109f90 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_mass_similarity with semantic role rare_extreme_view. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 19, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..55885df1b0caa74de325135da44b59d3ac4c4d1d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fa-b478-7222-b8b0-342868a96290"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_low_support_group_count_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY support ASC, \\\"EI\\\"\\nLIMIT 19;\",\"notes\":\"Uses the Low-Support Group Count template with group_col bound to \\\"EI\\\" and top_k=19.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13775,"cached_input_tokens":12672,"output_tokens":185,"reasoning_output_tokens":99}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..83af7a06b08cc99a117be4229ce99217d412937e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_low_support_group_count_v2\nSELECT\n \"EI\",\n COUNT(*) AS support\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY support ASC, \"EI\"\nLIMIT 19;","notes":"Uses the Low-Support Group Count template with group_col bound to \"EI\" and top_k=19."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5154b8df2a5356cf/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..93fa9cbd80a1e0c89fef4bb0f9530da4ca681051 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4761, "bytes_utf8": 4761, "lines": 130, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 274, "bytes_utf8": 274, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13738, "cached_input_tokens": 12032, "output_tokens": 179, "reasoning_output_tokens": 105}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..4d3f087b54db980c6f9c922c56caf761eded3719 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_51878145394a71eb", + "api_calls": 0, + "input_tokens": 13738, + "cached_input_tokens": 12032, + "output_tokens": 179, + "total_tokens": 13917, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7159.52, + "sql_execution_elapsed_ms_total": 1.19, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f79f595cec31dd8d9836af7fcdd43e18efcea78f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:58:59.502985+00:00", + "ended_at": "2026-05-19T15:59:06.662557+00:00", + "elapsed_ms": 7159.52, + "prompt_metrics": { + "chars": 4761, + "bytes_utf8": 4761, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 620, + "bytes_utf8": 620, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 274, + "bytes_utf8": 274, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13738, + "cached_input_tokens": 12032, + "output_tokens": 179, + "reasoning_output_tokens": 105 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..85b6bd058c20c253e0c3bfc95a0ede8cc7b0a010 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_count", + "template_name": "Grouped Count by Category", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_count", + "bindings": { + "group_col": "EI", + "top_k": 13, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..1b1d8a490b0f4523a805e875aec2771254184546 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-3cb0-7d90-a846-a9e653d825e4"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_clickbench_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS row_count\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY row_count DESC;\",\"notes\":\"Uses the provided Grouped Count by Category template with group_col bound to \\\"EI\\\" to show class count distribution.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13738,"cached_input_tokens":12032,"output_tokens":179,"reasoning_output_tokens":105}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..bfc3210d718335d38ea258033be08b05d54e8342 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_clickbench_group_count\nSELECT \"EI\", COUNT(*) AS row_count\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY row_count DESC;","notes":"Uses the provided Grouped Count by Category template with group_col bound to \"EI\" to show class count distribution."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..63d7af93e1f29bf46194c8dd7f93347c10debcd3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI. +Result preview: [{"EI": "N", "row_count": 1655}, {"EI": "IE", "row_count": 768}, {"EI": "EI", "row_count": 766}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..86a3b8816ad9f5daa82b442045d350a947eb5dfc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/generated_sql.sql @@ -0,0 +1,17 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: subgroup_structure +-- canonical_subitem_id: subgroup_size_stability +-- intended_facet_id: subgroup_distribution_shift +-- variant_semantic_role: count_distribution +-- template_id: tpl_clickbench_group_count +-- query_record_id: v2q_c3_51878145394a71eb +-- problem_id: v2p_c3_26171062c5e9db41 +-- realization_mode: agent +-- source_kind: agent +SELECT "EI", COUNT(*) AS row_count +FROM "c3" +GROUP BY "EI" +ORDER BY row_count DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..61ea8e558053d17a61c73e8f6c05e82d477273c2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 1, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_clickbench_group_count\nSELECT \"EI\", COUNT(*) AS row_count\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY row_count DESC;", "result": "{\"query\": \"-- template_id: tpl_clickbench_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS row_count\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY row_count DESC;\", \"columns\": [\"EI\", \"row_count\"], \"rows\": [{\"EI\": \"N\", \"row_count\": 1655}, {\"EI\": \"IE\", \"row_count\": 768}, {\"EI\": \"EI\", \"row_count\": 766}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 1.19}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..271474d60dc22bb24829218bc2ea6ad71d8a713b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/run_manifest.json @@ -0,0 +1,87 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T15:58:59.501035+00:00", + "ended_at": "2026-05-19T15:59:06.666050+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_51878145394a71eb", + "problem_id": "v2p_c3_26171062c5e9db41", + "dataset_id": "c3", + "template_id": "tpl_clickbench_group_count", + "template_name": "Grouped Count by Category", + "family_id": "subgroup_structure", + "canonical_subitem_id": "subgroup_size_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "count_distribution", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "top_k": 13, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;", + "notes": [ + "default_facets=subgroup_distribution_shift", + "template_selection_mode=rule", + "problem_index_within_template=2", + "sql_variant_index=1/1", + "binding_index=13" + ], + "template_selection_mode": "rule", + "selected_template_rank": 2, + "problem_index_within_template": 2, + "sql_variant_index": 1, + "sql_variant_total": 1 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_51878145394a71eb.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_51878145394a71eb", + "api_calls": 0, + "input_tokens": 13738, + "cached_input_tokens": 12032, + "output_tokens": 179, + "total_tokens": 13917, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7159.52, + "sql_execution_elapsed_ms_total": 1.19, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..7636676fc294e4ad59050da5fe62f2ecac648667 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/trace.jsonl @@ -0,0 +1 @@ +{"timestamp": "2026-05-19T15:59:06.663456+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 7159.52, "started_at": "2026-05-19T15:58:59.502985+00:00", "ended_at": "2026-05-19T15:59:06.662557+00:00", "prompt_metrics": {"chars": 4761, "bytes_utf8": 4761, "lines": 130, "estimated_tokens": null}, "response_metrics": {"chars": 274, "bytes_utf8": 274, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13738, "cached_input_tokens": 12032, "output_tokens": 179, "reasoning_output_tokens": 105}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_clickbench_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS row_count\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY row_count DESC;\",\"notes\":\"Uses the provided Grouped Count by Category template with group_col bound to \\\"EI\\\" to show class count distribution.\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_51878145394a71eb/usage_summary.json new file 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file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..479b05489e5b22edbd829247364b5b1ab8a58484 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/conversation.jsonl @@ -0,0 +1,4 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4843, "bytes_utf8": 4843, "lines": 130, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "status": "failed", "error": "AI CLI command failed with exit code 1: "} +{"attempt": 2, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_2.txt", "metrics": {"chars": 4843, "bytes_utf8": 4843, "lines": 130, "estimated_tokens": null}} +{"attempt": 2, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_2.txt", "raw_content_path": "cli/sql_response_attempt_2.raw.txt", "stderr_path": "cli/sql_stderr_attempt_2.txt", "metrics": {"chars": 349, "bytes_utf8": 349, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13774, "cached_input_tokens": 12032, "output_tokens": 188, "reasoning_output_tokens": 93}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..6fd3153cb2bb01198c7868f71edeabdbb7b1bd5f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 2, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_52235ce4ac46a4c1", + "api_calls": 0, + "input_tokens": 13774, + "cached_input_tokens": 12032, + "output_tokens": 188, + "total_tokens": 13962, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10346.88, + "sql_execution_elapsed_ms_total": 1.69, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b2935cc9cfa6b338dbc486416995d3e7c35fcee3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:05:25.391130+00:00", + "ended_at": "2026-05-19T16:05:28.544034+00:00", + "elapsed_ms": 3152.87, + "returncode": 1, + "prompt_metrics": { + "chars": 4843, + "bytes_utf8": 4843, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d927802a0eeb7dee4540bfffe345fd4e54ad2e24 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_attempt_2.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:05:29.546121+00:00", + "ended_at": "2026-05-19T16:05:36.740190+00:00", + "elapsed_ms": 7194.01, + "prompt_metrics": { + "chars": 4843, + "bytes_utf8": 4843, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 701, + "bytes_utf8": 701, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 349, + "bytes_utf8": 349, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13774, + "cached_input_tokens": 12032, + "output_tokens": 188, + "reasoning_output_tokens": 93 + } + }, + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..f503cf35a8f2c9c56a430a60d0434ea2aaaa655c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 19, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..f503cf35a8f2c9c56a430a60d0434ea2aaaa655c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 19, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..9d488d6f1a6bc9b5ce3c87b50a1cff605cbc88e3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-2020-7c90-9e90-0783549d3e3b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..a507ac0872c3468037dce540bcd76219f9ab30f4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-2020-7c90-9e90-0783549d3e3b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..da1f867d539dd0cb49cc76abdc0406a9bab9d112 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-3068-7933-ac0d-e28a36a04868"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_low_support_group_count_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY support ASC, \\\"EI\\\"\\nLIMIT 19;\",\"notes\":\"Applies the Low-Support Group Count template with group_col bound to \\\"EI\\\", counting rows per class label and returning groups with the smallest support first.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13774,"cached_input_tokens":12032,"output_tokens":188,"reasoning_output_tokens":93}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..1e50e03a35a3ccd703269daaa0318489d5c67e65 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_response_attempt_2.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_low_support_group_count_v2\nSELECT\n \"EI\",\n COUNT(*) AS support\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY support ASC, \"EI\"\nLIMIT 19;","notes":"Applies the Low-Support Group Count template with group_col bound to \"EI\", counting rows per class label and returning groups with the smallest support first."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..fc30eb1b7bbaf2358d91c134c71e83ce772c8840 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Low-Support Group Count to probe tail_set_consistency with semantic role count_distribution. Focus on group_col=EI. +Result preview: [{"EI": "EI", "support": 766}, {"EI": "IE", "support": 768}, {"EI": "N", "support": 1655}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..ec0a70c99698aa04534afb09b3218236072dc38d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/generated_sql.sql @@ -0,0 +1,20 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: tail_rarity_structure +-- canonical_subitem_id: tail_set_consistency +-- intended_facet_id: low_support_extremes +-- variant_semantic_role: count_distribution +-- template_id: tpl_tail_low_support_group_count_v2 +-- query_record_id: v2q_c3_52235ce4ac46a4c1 +-- problem_id: v2p_c3_5e255bf486ed0315 +-- realization_mode: agent +-- source_kind: agent +SELECT + "EI", + COUNT(*) AS support +FROM "c3" +GROUP BY "EI" +ORDER BY support ASC, "EI" +LIMIT 19; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..5367235b5c75e887b4515d978d356d8e923998ce --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 2, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_tail_low_support_group_count_v2\nSELECT\n \"EI\",\n COUNT(*) AS support\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY support ASC, \"EI\"\nLIMIT 19;", "result": "{\"query\": \"-- template_id: tpl_tail_low_support_group_count_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY support ASC, \\\"EI\\\"\\nLIMIT 19;\", \"columns\": [\"EI\", \"support\"], \"rows\": [{\"EI\": \"EI\", \"support\": 766}, {\"EI\": \"IE\", \"support\": 768}, {\"EI\": \"N\", \"support\": 1655}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 1.69}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..fb00afa43cd61c587e3a053415e7e67103e3e624 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/run_manifest.json @@ -0,0 +1,87 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:05:25.390062+00:00", + "ended_at": "2026-05-19T16:05:36.744731+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_52235ce4ac46a4c1", + "problem_id": "v2p_c3_5e255bf486ed0315", + "dataset_id": "c3", + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "family_id": "tail_rarity_structure", + "canonical_subitem_id": "tail_set_consistency", + "intended_facet_id": "low_support_extremes", + "variant_semantic_role": "count_distribution", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role count_distribution. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "top_k": 19, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "notes": [ + "default_facets=low_support_extremes", + "template_selection_mode=rule", + "problem_index_within_template=7", + "sql_variant_index=2/2", + "binding_index=54" + ], + "template_selection_mode": "rule", + "selected_template_rank": 5, + "problem_index_within_template": 7, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_52235ce4ac46a4c1.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_52235ce4ac46a4c1", + "api_calls": 0, + "input_tokens": 13774, + "cached_input_tokens": 12032, + "output_tokens": 188, + "total_tokens": 13962, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10346.88, + "sql_execution_elapsed_ms_total": 1.69, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..aeee3cd7a9255806ebfc5042a9fedc4c168905ef --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:05:28.544827+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3152.87, "started_at": "2026-05-19T16:05:25.391130+00:00", "ended_at": "2026-05-19T16:05:28.544034+00:00", "prompt_metrics": {"chars": 4843, "bytes_utf8": 4843, "lines": 130, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40fc-2020-7c90-9e90-0783549d3e3b\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:05:36.741222+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 7194.01, "started_at": "2026-05-19T16:05:29.546121+00:00", "ended_at": "2026-05-19T16:05:36.740190+00:00", "prompt_metrics": {"chars": 4843, "bytes_utf8": 4843, "lines": 130, "estimated_tokens": null}, "response_metrics": {"chars": 349, "bytes_utf8": 349, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13774, "cached_input_tokens": 12032, "output_tokens": 188, "reasoning_output_tokens": 93}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_tail_low_support_group_count_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY support ASC, \\\"EI\\\"\\nLIMIT 19;\",\"notes\":\"Applies the Low-Support Group Count template with group_col bound to \\\"EI\\\", counting rows per class label and returning groups with the smallest support first.\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..e61bd51e43c4a57af3a52df516dc9d73643a37d8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/usage_summary.json @@ -0,0 +1,20 @@ +{ + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_52235ce4ac46a4c1", + "api_calls": 0, + "input_tokens": 13774, + "cached_input_tokens": 12032, + "output_tokens": 188, + "total_tokens": 13962, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10346.88, + "sql_execution_elapsed_ms_total": 1.69, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_52235ce4ac46a4c1/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..93ecc38b34605cfca7941ff37520a730a92e9988 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:25.678220+00:00", + "ended_at": "2026-05-19T16:08:28.700942+00:00", + "elapsed_ms": 3022.7, + "returncode": 1, + "prompt_metrics": { + "chars": 5030, + "bytes_utf8": 5030, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a22ce4bb932165dc557562b5343381ab727b820f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:29.702977+00:00", + "ended_at": "2026-05-19T16:08:32.628964+00:00", + "elapsed_ms": 2925.92, + "returncode": 1, + "prompt_metrics": { + "chars": 5030, + "bytes_utf8": 5030, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..02cbc539a3ae5f2897f1cd6d8c2bdfa55fb5855f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "top_k": 14, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..02cbc539a3ae5f2897f1cd6d8c2bdfa55fb5855f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "top_k": 14, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..06bb281cb15d442a1451d5651510a4a438fa548d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-e08e-7d72-a9f1-dde9f296bb5b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..54c0f118db8baf95e0ce987f9277901fcad787b0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-e08e-7d72-a9f1-dde9f296bb5b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..e4b34462ca90d4a832468018c617fd3058880c06 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-effb-7b31-a5a8-c2d4983dc401"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e01a4732eea56524f2bfc526eff29b150a7e7671 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-effb-7b31-a5a8-c2d4983dc401"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_531132e2f052f6a6/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c0a06e3fd13e0692fd20b2a5e4b44250a7cc216d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:04:44.138899+00:00", + "ended_at": "2026-05-19T16:04:49.575054+00:00", + "elapsed_ms": 5436.11, + "returncode": 1, + "prompt_metrics": { + "chars": 4841, + "bytes_utf8": 4841, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..31ec0f8f2c99ebb4d62ce85627e036a496e5964a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role rare_extreme_view. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 12, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..d0f25fdd0f8ad92565260005426ea2efbe64a76b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-6f9d-7e70-884c-1618baedcd1f"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..44f20224c8b14a39c079acf788c1366d32906c08 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-7f00-7183-9bbc-2b7465f6d991"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5911dfdce8ed274a/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..3a9f1a6495f6900803e95a222a8d6f8ffba059cb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5091, "bytes_utf8": 5091, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 375, "bytes_utf8": 375, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13825, "cached_input_tokens": 12032, "output_tokens": 400, "reasoning_output_tokens": 297}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..9bce83a6f251229b4c4f8b242645021da22427e3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_5cf23b213da8eefc", + "api_calls": 0, + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 400, + "total_tokens": 14225, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 9860.56, + "sql_execution_elapsed_ms_total": 1.22, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..55efb64e3e601579fa74a74aa3a21d6379cacae7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:00:28.940034+00:00", + "ended_at": "2026-05-19T16:00:38.800620+00:00", + "elapsed_ms": 9860.56, + "prompt_metrics": { + "chars": 5091, + "bytes_utf8": 5091, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 726, + "bytes_utf8": 726, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 375, + "bytes_utf8": 375, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 400, + "reasoning_output_tokens": 297 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..4df4c7b82b7645928d7103c1b58984d5b5ec9578 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 11, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..eab78a7158a9358c9892368d1d5b674e82af70dc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f7-9a00-7ae1-b00a-8d031c65a759"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Uses the planned Grouped Condition Rate template with \\\"EI\\\" as both the grouping and condition column, computing the within-group proportion of rows labeled 'N'.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13825,"cached_input_tokens":12032,"output_tokens":400,"reasoning_output_tokens":297}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..ad9ccd149be616feaa315e8375a4e7cb3b361445 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;","notes":"Uses the planned Grouped Condition Rate template with \"EI\" as both the grouping and condition column, computing the within-group proportion of rows labeled 'N'."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5cf23b213da8eefc/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4d7101f2700d097a447a0b877f1c44fbfb74d25b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:04:22.699710+00:00", + "ended_at": "2026-05-19T16:04:25.513833+00:00", + "elapsed_ms": 2814.09, + "returncode": 1, + "prompt_metrics": { + "chars": 4841, + "bytes_utf8": 4841, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7486b0507d48839ce020683495923ba82baa3176 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:04:26.515546+00:00", + "ended_at": "2026-05-19T16:04:29.549979+00:00", + "elapsed_ms": 3034.38, + "returncode": 1, + "prompt_metrics": { + "chars": 4841, + "bytes_utf8": 4841, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..1c93be74a40f5bb234e3f53c30f5aed0fb53e685 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_mass_similarity with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 11, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..1c93be74a40f5bb234e3f53c30f5aed0fb53e685 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_mass_similarity with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 11, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..076b54d5a8efebd2512d933d730c6fa2d5205c84 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-2b57-77a2-ac3d-8319a6927289"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..ca7ab9cd33d324167703a710a2789acc4303c93d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-2b57-77a2-ac3d-8319a6927289"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..faec2a7bf4a6b0b29c0cc11e0668161c7de68c5a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-3a1e-7a72-a97a-499718439ad9"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..6a9a1d3aeeb8a2394391822445b4e2eb0fbbd926 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-3a1e-7a72-a97a-499718439ad9"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5ed593956e9f0873/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..76f8f1251d6572b3cd1d87e222e34686054f15bd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4976, "bytes_utf8": 4976, "lines": 132, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 331, "bytes_utf8": 331, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13795, "cached_input_tokens": 12032, "output_tokens": 196, "reasoning_output_tokens": 96}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..87f7d3f2fa47c32c99b89b7645de08e2c8271da4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_5eed62bc19a79696", + "api_calls": 0, + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 196, + "total_tokens": 13991, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 6741.42, + "sql_execution_elapsed_ms_total": 2.61, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b908b50c126f3bbe8e1cb5c934fdf643021a36ce --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:58:06.306539+00:00", + "ended_at": "2026-05-19T15:58:13.048034+00:00", + "elapsed_ms": 6741.42, + "prompt_metrics": { + "chars": 4976, + "bytes_utf8": 4976, + "lines": 132, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 689, + "bytes_utf8": 689, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 331, + "bytes_utf8": 331, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 196, + "reasoning_output_tokens": 96 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..28637bec26edf0c38e79c2f87728898e89a7f620 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,132 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_distinct_topk", + "bindings": { + "group_col": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 17, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..ca9db16e680b3eaa5edc22e05b43537f66c1d784 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f5-6cfa-7380-9700-768d562f8c7c"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_clickbench_group_distinct_topk\\nSELECT \\\"EI\\\", COUNT(DISTINCT \\\"ATRINS-DONOR-521\\\") AS distinct_entities\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY distinct_entities DESC\\nLIMIT 17;\",\"notes\":\"Uses the provided template with group_col=\\\"EI\\\" and entity_col=\\\"ATRINS-DONOR-521\\\" on the single table \\\"c3\\\".\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13795,"cached_input_tokens":12032,"output_tokens":196,"reasoning_output_tokens":96}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..652d7c4bf49638f231c752a876da7011f5a5c0f1 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_clickbench_group_distinct_topk\nSELECT \"EI\", COUNT(DISTINCT \"ATRINS-DONOR-521\") AS distinct_entities\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY distinct_entities DESC\nLIMIT 17;","notes":"Uses the provided template with group_col=\"EI\" and entity_col=\"ATRINS-DONOR-521\" on the single table \"c3\"."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..54fcff1e7be37ee70756225c92f9a452bb52699f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI. +Result preview: [{"EI": "N", "distinct_entities": 1655}, {"EI": "IE", "distinct_entities": 762}, {"EI": "EI", "distinct_entities": 760}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..484ebe57d294233217cd95085da75a3b7b758607 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/generated_sql.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_distribution_shift +-- variant_semantic_role: ranked_signal_view +-- template_id: tpl_clickbench_group_distinct_topk +-- query_record_id: v2q_c3_5eed62bc19a79696 +-- problem_id: v2p_c3_174ffe49aa29a356 +-- realization_mode: agent +-- source_kind: agent +SELECT "EI", COUNT(DISTINCT "ATRINS-DONOR-521") AS distinct_entities +FROM "c3" +GROUP BY "EI" +ORDER BY distinct_entities DESC +LIMIT 17; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..7a01d65f25579d7b9e5bcafea319f1417bb32660 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 1, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_clickbench_group_distinct_topk\nSELECT \"EI\", COUNT(DISTINCT \"ATRINS-DONOR-521\") AS distinct_entities\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY distinct_entities DESC\nLIMIT 17;", "result": "{\"query\": \"-- template_id: tpl_clickbench_group_distinct_topk\\nSELECT \\\"EI\\\", COUNT(DISTINCT \\\"ATRINS-DONOR-521\\\") AS distinct_entities\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY distinct_entities DESC\\nLIMIT 17;\", \"columns\": [\"EI\", \"distinct_entities\"], \"rows\": [{\"EI\": \"N\", \"distinct_entities\": 1655}, {\"EI\": \"IE\", \"distinct_entities\": 762}, {\"EI\": \"EI\", \"distinct_entities\": 760}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 2.61}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..c97d3164afe91b36fa67b5493b6cb72eb2f56b33 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/run_manifest.json @@ -0,0 +1,89 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T15:58:06.304846+00:00", + "ended_at": "2026-05-19T15:58:13.053302+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_5eed62bc19a79696", + "problem_id": "v2p_c3_174ffe49aa29a356", + "dataset_id": "c3", + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "family_id": "subgroup_structure", + "canonical_subitem_id": "internal_profile_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "ranked_signal_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "support", + "extended_family": false, + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 17, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "entity_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift,subgroup_rank_order,subgroup_conditional_contrast", + "template_selection_mode=rule", + "problem_index_within_template=3", + "sql_variant_index=2/2", + "binding_index=2" + ], + "template_selection_mode": "rule", + "selected_template_rank": 1, + "problem_index_within_template": 3, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_5eed62bc19a79696.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_5eed62bc19a79696", + "api_calls": 0, + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 196, + "total_tokens": 13991, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 6741.42, + "sql_execution_elapsed_ms_total": 2.61, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..dd95e96ebb2d4dec8ccf1a79f21ff798353733a9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/trace.jsonl @@ -0,0 +1 @@ +{"timestamp": "2026-05-19T15:58:13.048870+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 6741.42, "started_at": "2026-05-19T15:58:06.306539+00:00", "ended_at": "2026-05-19T15:58:13.048034+00:00", "prompt_metrics": {"chars": 4976, "bytes_utf8": 4976, "lines": 132, "estimated_tokens": null}, "response_metrics": {"chars": 331, "bytes_utf8": 331, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13795, "cached_input_tokens": 12032, "output_tokens": 196, "reasoning_output_tokens": 96}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_clickbench_group_distinct_topk\\nSELECT \\\"EI\\\", COUNT(DISTINCT \\\"ATRINS-DONOR-521\\\") AS distinct_entities\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY distinct_entities DESC\\nLIMIT 17;\",\"notes\":\"Uses the provided template with group_col=\\\"EI\\\" and entity_col=\\\"ATRINS-DONOR-521\\\" on the single table \\\"c3\\\".\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..dcca70541864248f9bb4c7a003cef4321ebe3513 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/usage_summary.json @@ -0,0 +1,20 @@ +{ + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_5eed62bc19a79696", + "api_calls": 0, + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 196, + "total_tokens": 13991, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 6741.42, + "sql_execution_elapsed_ms_total": 2.61, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_5eed62bc19a79696/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..6353e214e6133b40e2c9079e621d121fd42fe432 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:48.346257+00:00", + "ended_at": "2026-05-19T16:09:51.191523+00:00", + "elapsed_ms": 2845.24, + "returncode": 1, + "prompt_metrics": { + "chars": 5032, + "bytes_utf8": 5032, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..de98816b0a57ad929eb869de1e0c568b384307f3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:52.193224+00:00", + "ended_at": "2026-05-19T16:09:55.562183+00:00", + "elapsed_ms": 3368.93, + "returncode": 1, + "prompt_metrics": { + "chars": 5032, + "bytes_utf8": 5032, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..08698e103ebf5d1e992064ad48678df7f260dde3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "top_k": 19, + "top_n": 7, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..08698e103ebf5d1e992064ad48678df7f260dde3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "top_k": 19, + "top_n": 7, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..ca278cf298a5e779ec75ce3d230b11bedd720d7c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-233a-7f73-9777-af77bf6c575f"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..f2080f5368a1d78d5e3ea917ba9adec1e521a9a0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-233a-7f73-9777-af77bf6c575f"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..c30fbe7d3a8520fe00d6ec827a4ba35b898a4857 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-323d-7d01-8363-47acaf63dd6f"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..78bf038aed45733bf1a8c21e38ec9c3f0b47668a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-323d-7d01-8363-47acaf63dd6f"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_66337c7eb434cd22/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e5dd66e87d6b0ee3b5da257b2b63241df06f2926 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:07:58.008714+00:00", + "ended_at": "2026-05-19T16:08:01.019792+00:00", + "elapsed_ms": 3011.05, + "returncode": 1, + "prompt_metrics": { + "chars": 5029, + "bytes_utf8": 5029, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4e778bd03b76b536ea59c0bf4e5046c6e8e005e4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:02.021475+00:00", + "ended_at": "2026-05-19T16:08:05.118659+00:00", + "elapsed_ms": 3097.16, + "returncode": 1, + "prompt_metrics": { + "chars": 5029, + "bytes_utf8": 5029, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..bfbe0b4d04ba86b51393d574ef9cb045ba4b6a5d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 12, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..bfbe0b4d04ba86b51393d574ef9cb045ba4b6a5d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 12, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..766c2dada82dda4192be084cdd456e532ef51e22 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-742e-7b42-805d-502148c5c7dc"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..8919c20cf86eb7cdc317eb9a8bcd829b8c0e8594 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-742e-7b42-805d-502148c5c7dc"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..b5a110fc08e702e11fa90c3617e6d8fde0e71874 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-83ff-7c52-82a2-1fd644349811"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..f3dc62036b98d61da7d7174b9397993c04d6515f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-83ff-7c52-82a2-1fd644349811"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_685da22e51d2647f/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8a2d0ed0e98d9bb5bbe7fafb32d8d9919baa8b0d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:39.414259+00:00", + "ended_at": "2026-05-19T16:10:42.636261+00:00", + "elapsed_ms": 3221.98, + "returncode": 1, + "prompt_metrics": { + "chars": 5183, + "bytes_utf8": 5183, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..5bf50f5d565dfe2c05471103b25caa2741011031 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:43.637751+00:00", + "ended_at": "2026-05-19T16:10:46.751583+00:00", + "elapsed_ms": 3113.8, + "returncode": 1, + "prompt_metrics": { + "chars": 5183, + "bytes_utf8": 5183, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..91f697edcdb3b011c334aa6208b39937b9a4b966 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "entity_col": "ATRINS-DONOR-521", + "top_k": 13, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..91f697edcdb3b011c334aa6208b39937b9a4b966 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "entity_col": "ATRINS-DONOR-521", + "top_k": 13, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..f0e671018df9c2af68fd2c36e82e43e4e951ab10 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-eac8-7441-8f49-ad1ab083896b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..66efa8123ef7a4e22a8209b72df51a83de67e482 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-eac8-7441-8f49-ad1ab083896b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..f2e50a088e2360bfcfef7424fa812ade0fbfb57e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-fb51-7172-8128-906f646432f0"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..d820238a1034808f276d212e8fdef94392c90678 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-fb51-7172-8128-906f646432f0"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6d8bbd186c365a6d/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..4643696bb0090a94edd26aac73794a117ac8e931 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/conversation.jsonl @@ -0,0 +1,4 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5180, "bytes_utf8": 5180, "lines": 133, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "status": "failed", "error": "AI CLI command failed with exit code 1: "} +{"attempt": 2, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_2.txt", "metrics": {"chars": 5180, "bytes_utf8": 5180, "lines": 133, "estimated_tokens": null}} +{"attempt": 2, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_2.txt", "raw_content_path": "cli/sql_response_attempt_2.raw.txt", "stderr_path": "cli/sql_stderr_attempt_2.txt", "metrics": {"chars": 502, "bytes_utf8": 502, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13878, "cached_input_tokens": 12032, "output_tokens": 331, "reasoning_output_tokens": 178}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..c0e5231a1731eb55c04d465546520c119cc2554a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 2, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_6e57c7d5bc2ccf22", + "api_calls": 0, + "input_tokens": 13878, + "cached_input_tokens": 12032, + "output_tokens": 331, + "total_tokens": 14209, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 12369.22, + "sql_execution_elapsed_ms_total": 1.31, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1601dc70d59417061666cdd1f6c087fdef07a5db --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:07:07.737268+00:00", + "ended_at": "2026-05-19T16:07:11.183386+00:00", + "elapsed_ms": 3446.1, + "returncode": 1, + "prompt_metrics": { + "chars": 5180, + "bytes_utf8": 5180, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..18fa6b1d11cf63100fd117d98b85179f5d5b4f5e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_attempt_2.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:07:12.185423+00:00", + "ended_at": "2026-05-19T16:07:21.108587+00:00", + "elapsed_ms": 8923.12, + "prompt_metrics": { + "chars": 5180, + "bytes_utf8": 5180, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 861, + "bytes_utf8": 861, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 502, + "bytes_utf8": 502, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13878, + "cached_input_tokens": 12032, + "output_tokens": 331, + "reasoning_output_tokens": 178 + } + }, + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..a4a0f009790fd8d8d3af2fe30d64d7b4df79b158 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "EI", + "top_k": 15, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..a4a0f009790fd8d8d3af2fe30d64d7b4df79b158 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "EI", + "top_k": 15, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..3f83e924d94f353eba4e3406898dbb0b91c32fcd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-aff6-7780-bee8-6385d10c6fbf"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..55608e010ac5eb863b5662b601abd51e23ebcd8d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-aff6-7780-bee8-6385d10c6fbf"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..f8fd727fd597987f0371110b95c8ed4da2fbe8fc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-c140-7503-b4f5-5e70546ee1cc"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_target_rate_extremes_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support,\\n AVG(CASE WHEN \\\"EI\\\" = 'EI' THEN 1 ELSE 0 END) AS focus_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nHAVING COUNT(*) >= 4\\nORDER BY focus_rate DESC, support ASC\\nLIMIT 15;\",\"notes\":\"Applied the requested template with group_col=\\\"EI\\\" and target_col=\\\"EI\\\". Because the grouping column is the same as the target column, each group's focus_rate is deterministic: 1.0 for group 'EI' and 0.0 for other labels.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13878,"cached_input_tokens":12032,"output_tokens":331,"reasoning_output_tokens":178}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..918e29a486d4c74f37e5f67c07adf4d7bb6d7ff2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_response_attempt_2.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_target_rate_extremes_v2\nSELECT\n \"EI\",\n COUNT(*) AS support,\n AVG(CASE WHEN \"EI\" = 'EI' THEN 1 ELSE 0 END) AS focus_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nHAVING COUNT(*) >= 4\nORDER BY focus_rate DESC, support ASC\nLIMIT 15;","notes":"Applied the requested template with group_col=\"EI\" and target_col=\"EI\". Because the grouping column is the same as the target column, each group's focus_rate is deterministic: 1.0 for group 'EI' and 0.0 for other labels."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e57c7d5bc2ccf22/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..e7f8345a72a0e5a6b3b762b03b264a775a4782c6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4762, "bytes_utf8": 4762, "lines": 130, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 273, "bytes_utf8": 273, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13738, "cached_input_tokens": 12032, "output_tokens": 170, "reasoning_output_tokens": 96}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..2ccdd231a1b279a04f81d6d460d2c05d439211d9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_6e5d843e864e6717", + "api_calls": 0, + "input_tokens": 13738, + "cached_input_tokens": 12032, + "output_tokens": 170, + "total_tokens": 13908, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7906.54, + "sql_execution_elapsed_ms_total": 2.42, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4451b18f533220cf48af49e70ededc1576e8dd30 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:59:22.301939+00:00", + "ended_at": "2026-05-19T15:59:30.208521+00:00", + "elapsed_ms": 7906.54, + "prompt_metrics": { + "chars": 4762, + "bytes_utf8": 4762, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 618, + "bytes_utf8": 618, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 273, + "bytes_utf8": 273, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13738, + "cached_input_tokens": 12032, + "output_tokens": 170, + "reasoning_output_tokens": 96 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..63c155569c4e117f24218155759e75c6f0595e8d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_count", + "template_name": "Grouped Count by Category", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_count", + "bindings": { + "group_col": "EI", + "top_k": 11, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..b7cdcd7ac7c22b2cb5c51417763be9feed61ac7e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-95d2-7693-abc8-a9588e8c2aa6"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_clickbench_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS row_count\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY row_count DESC;\",\"notes\":\"Uses the planned Grouped Count by Category template with group_col bound to \\\"EI\\\" to return the class distribution.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13738,"cached_input_tokens":12032,"output_tokens":170,"reasoning_output_tokens":96}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..2af3211770df403d50be9b905d2130b8df06b97f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_clickbench_group_count\nSELECT \"EI\", COUNT(*) AS row_count\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY row_count DESC;","notes":"Uses the planned Grouped Count by Category template with group_col bound to \"EI\" to return the class distribution."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6e5d843e864e6717/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..b13d5fc549085b301f956e2fda4198e50f25b553 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4843, "bytes_utf8": 4843, "lines": 130, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 298, "bytes_utf8": 298, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13775, "cached_input_tokens": 12032, "output_tokens": 286, "reasoning_output_tokens": 196}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..1170a2056b6b03463d33baa3e42245a65423c8a5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_6fdb6b259a64bd63", + "api_calls": 0, + "input_tokens": 13775, + "cached_input_tokens": 12032, + "output_tokens": 286, + "total_tokens": 14061, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 9459.91, + "sql_execution_elapsed_ms_total": 2.27, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ccbd73ac3f9b0b3da87c3322acb7202b8f5f1426 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:05:08.179373+00:00", + "ended_at": "2026-05-19T16:05:17.639309+00:00", + "elapsed_ms": 9459.91, + "prompt_metrics": { + "chars": 4843, + "bytes_utf8": 4843, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 655, + "bytes_utf8": 655, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 298, + "bytes_utf8": 298, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13775, + "cached_input_tokens": 12032, + "output_tokens": 286, + "reasoning_output_tokens": 196 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..10487f052d3f1f63c382601f87c4c8362c35a06f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_mass_similarity with semantic role rare_extreme_view. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 18, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..391b6f8d181146e7cb74cb0f191bee147cb9e285 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-dcd6-7582-b012-1fc7f06a919e"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_low_support_group_count_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS \\\"support\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"support\\\" ASC, \\\"EI\\\"\\nLIMIT 18;\",\"notes\":\"Uses the required Low-Support Group Count template with group_col bound to EI on the single table c3.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13775,"cached_input_tokens":12032,"output_tokens":286,"reasoning_output_tokens":196}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e1b050b83967e359e5c7de55184f58e23d78ae09 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_low_support_group_count_v2\nSELECT\n \"EI\",\n COUNT(*) AS \"support\"\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY \"support\" ASC, \"EI\"\nLIMIT 18;","notes":"Uses the required Low-Support Group Count template with group_col bound to EI on the single table c3."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_6fdb6b259a64bd63/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..21641d4760a0cc46e283966905937729dbacecd3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5647, "bytes_utf8": 5647, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 601, "bytes_utf8": 601, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13972, "cached_input_tokens": 12032, "output_tokens": 328, "reasoning_output_tokens": 156}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..694c00633efee5f86f4f72351d385a5acbcb51ac --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_708aaa61bcb3845e", + "api_calls": 0, + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 328, + "total_tokens": 14300, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 8169.42, + "sql_execution_elapsed_ms_total": 1.48, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0b0bf1cc31e6d959051b52258a92e93d7abd10c9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:02:53.005862+00:00", + "ended_at": "2026-05-19T16:03:01.175315+00:00", + "elapsed_ms": 8169.42, + "prompt_metrics": { + "chars": 5647, + "bytes_utf8": 5647, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 970, + "bytes_utf8": 970, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 601, + "bytes_utf8": 601, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 328, + "reasoning_output_tokens": 156 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..848126bbc7e03efcf54c07e194072edfd4409cce --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_ratio_two_conditions", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 10, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..753101103d1a256e96f0d3b441a878071cc9baa3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-ccc5-7230-a24c-3d32e4442fc5"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_ratio_two_conditions\\nWITH grouped AS (\\n SELECT \\\"EI\\\",\\n SUM(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS numerator_count,\\n SUM(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS denominator_count\\n FROM \\\"c3\\\"\\n GROUP BY \\\"EI\\\"\\n)\\nSELECT \\\"EI\\\",\\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\\nFROM grouped\\nORDER BY condition_ratio DESC;\",\"notes\":\"Uses the planned template with group_col=\\\"EI\\\" and condition_col=\\\"EI\\\", computing the ratio of label 'N' to label 'IE' within each EI group.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13972,"cached_input_tokens":12032,"output_tokens":328,"reasoning_output_tokens":156}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..d0c6cf96fcdbc6fcc541a50b527ad3f2b64b60ed --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_ratio_two_conditions\nWITH grouped AS (\n SELECT \"EI\",\n SUM(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS denominator_count\n FROM \"c3\"\n GROUP BY \"EI\"\n)\nSELECT \"EI\",\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;","notes":"Uses the planned template with group_col=\"EI\" and condition_col=\"EI\", computing the ratio of label 'N' to label 'IE' within each EI group."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_708aaa61bcb3845e/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8ebd8dc6273011ded5bf018d45ceca87a4faf01d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:04:57.228770+00:00", + "ended_at": "2026-05-19T16:05:04.143903+00:00", + "elapsed_ms": 6915.1, + "returncode": 1, + "prompt_metrics": { + "chars": 4841, + "bytes_utf8": 4841, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..9a600d12d9035b2fb816a9f3d6a0b7bc81c81f06 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:05:05.145936+00:00", + "ended_at": "2026-05-19T16:05:08.177261+00:00", + "elapsed_ms": 3031.28, + "returncode": 1, + "prompt_metrics": { + "chars": 4841, + "bytes_utf8": 4841, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..9595a7b64477c3bb10187825a583822b18026885 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_mass_similarity with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 13, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..9595a7b64477c3bb10187825a583822b18026885 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_mass_similarity with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 13, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..17d7a3c81503a69a1d2b103f879b71140f7f9df2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-b205-7aa1-8c34-adb77c88937f"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..b2ade620446dc5855690e44fb9062e80eab7f4f4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-b205-7aa1-8c34-adb77c88937f"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..b0a621f5f4ea0c87051f14226f9133f09b63b095 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-d105-7450-a896-6b0613ea9929"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..024e8515cec80016a4baf4a939618903235656ed --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-d105-7450-a896-6b0613ea9929"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..6146d79877582f4328f8bea3ddc79306f3d91360 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/run_manifest.json @@ -0,0 +1,67 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:04:57.226950+00:00", + "ended_at": "2026-05-19T16:05:08.177986+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_71724bd6110cfbb0", + "problem_id": "v2p_c3_c0f9129558eee8e3", + "dataset_id": "c3", + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "family_id": "tail_rarity_structure", + "canonical_subitem_id": "tail_mass_similarity", + "intended_facet_id": "tail_ranked_signal", + "variant_semantic_role": "count_distribution", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Low-Support Group Count to probe tail_mass_similarity with semantic role count_distribution. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "top_k": 13, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "notes": [ + "default_facets=tail_ranked_signal", + "template_selection_mode=rule", + "problem_index_within_template=6", + "sql_variant_index=1/2", + "binding_index=53" + ], + "template_selection_mode": "rule", + "selected_template_rank": 5, + "problem_index_within_template": 6, + "sql_variant_index": 1, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..b3566b5d66685e68482d3d7a87e854a1b7bc66d3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_71724bd6110cfbb0/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:05:04.144729+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 6915.1, "started_at": "2026-05-19T16:04:57.228770+00:00", "ended_at": "2026-05-19T16:05:04.143903+00:00", "prompt_metrics": {"chars": 4841, "bytes_utf8": 4841, "lines": 130, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40fb-b205-7aa1-8c34-adb77c88937f\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:05:08.177902+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3031.28, "started_at": "2026-05-19T16:05:05.145936+00:00", "ended_at": "2026-05-19T16:05:08.177261+00:00", "prompt_metrics": {"chars": 4841, "bytes_utf8": 4841, "lines": 130, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40fb-d105-7450-a896-6b0613ea9929\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4a037b04de920ca1de470f4e140c6fe2cc4d68c0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:11:01.145355+00:00", + "ended_at": "2026-05-19T16:11:04.833289+00:00", + "elapsed_ms": 3687.91, + "returncode": 1, + "prompt_metrics": { + "chars": 5182, + "bytes_utf8": 5182, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..49f1c9865c4becc77e2152cfa1d3a13076a6d3fa --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:11:05.834849+00:00", + "ended_at": "2026-05-19T16:11:09.379321+00:00", + "elapsed_ms": 3544.43, + "returncode": 1, + "prompt_metrics": { + "chars": 5182, + "bytes_utf8": 5182, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..ba78b4fc44ec8b6b7a4f1a1fa1f79de6685efc98 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "entity_col": "ATRINS-DONOR-521", + "top_k": 10, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..ba78b4fc44ec8b6b7a4f1a1fa1f79de6685efc98 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "entity_col": "ATRINS-DONOR-521", + "top_k": 10, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..4878169db3479a6612ae62936aabe19a4caad415 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-3fb1-7822-bb38-55a25b62c3da"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..c747c0cd722712280c14f489f68eec3080b80eb7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-3fb1-7822-bb38-55a25b62c3da"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..9d73737e6a59d6684be1a6ea46ea9ee66197ce74 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-51ec-7f03-ab45-fa0a2a4fa681"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..2a35a73ce493c5df08b20da41070dc4f8e3a42ae --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-51ec-7f03-ab45-fa0a2a4fa681"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..d5c69afc1a9b8b24f642aad709be3dbcec3bf510 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/run_manifest.json @@ -0,0 +1,73 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:11:01.144035+00:00", + "ended_at": "2026-05-19T16:11:09.380588+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_7423e0888b0eec9d", + "problem_id": "v2p_c3_b2acc00906866377", + "dataset_id": "c3", + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "family_id": "subgroup_structure", + "canonical_subitem_id": "internal_profile_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "filtered_stable_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "support", + "extended_family": false, + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "entity_col": "ATRINS-DONOR-521", + "top_k": 10, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "entity_col", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift,subgroup_rank_order,subgroup_conditional_contrast", + "template_selection_mode=rule", + "problem_index_within_template=7", + "sql_variant_index=1/2", + "binding_index=90" + ], + "template_selection_mode": "rule", + "selected_template_rank": 8, + "problem_index_within_template": 7, + "sql_variant_index": 1, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..cbb925843dec51f194cb216393b693c8f3d7495f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7423e0888b0eec9d/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:11:04.833985+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3687.91, "started_at": "2026-05-19T16:11:01.145355+00:00", "ended_at": "2026-05-19T16:11:04.833289+00:00", "prompt_metrics": {"chars": 5182, "bytes_utf8": 5182, "lines": 136, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4101-3fb1-7822-bb38-55a25b62c3da\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:11:09.380444+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3544.43, "started_at": "2026-05-19T16:11:05.834849+00:00", "ended_at": "2026-05-19T16:11:09.379321+00:00", "prompt_metrics": {"chars": 5182, "bytes_utf8": 5182, "lines": 136, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4101-51ec-7f03-ab45-fa0a2a4fa681\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2e0c62b5bbcdd56fca40c5c9253d646b093d5e8e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:12.399963+00:00", + "ended_at": "2026-05-19T16:08:15.210745+00:00", + "elapsed_ms": 2810.76, + "returncode": 1, + "prompt_metrics": { + "chars": 5031, + "bytes_utf8": 5031, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0244819e64e3f3aec73491940604d50df0bc10dd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:16.212639+00:00", + "ended_at": "2026-05-19T16:08:18.918909+00:00", + "elapsed_ms": 2706.23, + "returncode": 1, + "prompt_metrics": { + "chars": 5031, + "bytes_utf8": 5031, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..6d299269362db4f1eb8770458fcc3058ea125572 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 13, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..6d299269362db4f1eb8770458fcc3058ea125572 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 13, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..7e8acac3392aa9f74ba3cdebce3574e82b8d4a6d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-ac75-74a2-b20e-c0f6daa0e765"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..42cfd11001a9284cb227328bb5b8750ffaf139f5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-ac75-74a2-b20e-c0f6daa0e765"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..1e07276549979ca61327c31de2f3c3d1dbc8e253 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-bb5d-7390-9398-1f21f6e353ea"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..6443424172ff322569351aab33f2ea0d286b6c8d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-bb5d-7390-9398-1f21f6e353ea"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_76b00c2620d3689f/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2a9009cdd5cc5480beb92b66162b0a4a24b38676 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:02:45.223912+00:00", + "ended_at": "2026-05-19T16:02:48.555954+00:00", + "elapsed_ms": 3332.02, + "returncode": 1, + "prompt_metrics": { + "chars": 5646, + "bytes_utf8": 5646, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..750f013db032bc69a3c0b69db63af31556b8457a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:02:49.557868+00:00", + "ended_at": "2026-05-19T16:02:53.003690+00:00", + "elapsed_ms": 3445.78, + "returncode": 1, + "prompt_metrics": { + "chars": 5646, + "bytes_utf8": 5646, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..7a0bcdb1baa5be50bf223737ce6beab9f6d98cbc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_ratio_two_conditions", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 14, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..7a0bcdb1baa5be50bf223737ce6beab9f6d98cbc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_ratio_two_conditions", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 14, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..34810cb75e98d829c38eaf09f2b22c963be311fb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-ae76-7fd2-885e-181aad60a0f8"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..34d1b6870511a7c7f4639b100528233715ffe191 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-ae76-7fd2-885e-181aad60a0f8"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..1162dfedab250271fa5e42fda1b5f33913e112b6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-bf75-7a31-8b12-fa57f985c188"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..52149a8d9419a027adb88e5ec2f0928c60c1169e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-bf75-7a31-8b12-fa57f985c188"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..e5f3172866c65caea8601cfca41a6f79bd161e26 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/run_manifest.json @@ -0,0 +1,72 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:02:45.223156+00:00", + "ended_at": "2026-05-19T16:02:53.004527+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_7935ee71428d4380", + "problem_id": "v2p_c3_030c44b593ddc7d4", + "dataset_id": "c3", + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "family_id": "conditional_dependency_structure", + "canonical_subitem_id": "direction_consistency", + "intended_facet_id": "conditional_rate_shift", + "variant_semantic_role": "contrastive_conditional_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 14, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "condition_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "notes": [ + "default_facets=conditional_rate_shift", + "template_selection_mode=rule", + "problem_index_within_template=4", + "sql_variant_index=1/1", + "binding_index=39" + ], + "template_selection_mode": "rule", + "selected_template_rank": 4, + "problem_index_within_template": 4, + "sql_variant_index": 1, + "sql_variant_total": 1 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..d24333d1c004b66909d7253521262903d2b67d69 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7935ee71428d4380/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:02:48.556674+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3332.02, "started_at": "2026-05-19T16:02:45.223912+00:00", "ended_at": "2026-05-19T16:02:48.555954+00:00", "prompt_metrics": {"chars": 5646, "bytes_utf8": 5646, "lines": 135, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40f9-ae76-7fd2-885e-181aad60a0f8\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:02:53.004443+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3445.78, "started_at": "2026-05-19T16:02:49.557868+00:00", "ended_at": "2026-05-19T16:02:53.003690+00:00", "prompt_metrics": {"chars": 5646, "bytes_utf8": 5646, "lines": 135, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40f9-bf75-7a31-8b12-fa57f985c188\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b595d73accc2a54acb7f8bab32918f0e8976d793 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:07:21.113849+00:00", + "ended_at": "2026-05-19T16:07:24.282331+00:00", + "elapsed_ms": 3168.46, + "returncode": 1, + "prompt_metrics": { + "chars": 5177, + "bytes_utf8": 5177, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..466ba11c3f2141ee3c74773e2e17c4bebcc46bda --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:07:25.283663+00:00", + "ended_at": "2026-05-19T16:07:28.446550+00:00", + "elapsed_ms": 3162.86, + "returncode": 1, + "prompt_metrics": { + "chars": 5177, + "bytes_utf8": 5177, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..74bf3792021ef0022858a0280a70d7eb993e425f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "N", + "top_k": 11, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..74bf3792021ef0022858a0280a70d7eb993e425f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "N", + "top_k": 11, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..dbe8703f042da8041e8ee76566f8ffca6dc76d94 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-e445-7c21-b47e-c108f6943401"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e202b22d51afcb2de43db6eb12298907e43216b2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-e445-7c21-b47e-c108f6943401"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..1f2930d772945b8ae6360522945781caac242982 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-f454-7a21-9de6-a14b6902df37"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..4048f705120388ac67815826b19a95c3526c3937 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-f454-7a21-9de6-a14b6902df37"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7971f7c1db95bcbf/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..11aa1f0352979b221634c9bd32e1c574cf184e44 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/conversation.jsonl @@ -0,0 +1,4 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4843, "bytes_utf8": 4843, "lines": 130, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "status": "failed", "error": "AI CLI command failed with exit code 1: "} +{"attempt": 2, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_2.txt", "metrics": {"chars": 4843, "bytes_utf8": 4843, "lines": 130, "estimated_tokens": null}} +{"attempt": 2, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_2.txt", "raw_content_path": "cli/sql_response_attempt_2.raw.txt", "stderr_path": "cli/sql_stderr_attempt_2.txt", "metrics": {"chars": 290, "bytes_utf8": 290, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13774, "cached_input_tokens": 12032, "output_tokens": 358, "reasoning_output_tokens": 266}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..e73cf3e869a87d1f6ae09d252ca1c2d074914cd9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 2, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_7a459ed4a681551e", + "api_calls": 0, + "input_tokens": 13774, + "cached_input_tokens": 12032, + "output_tokens": 358, + "total_tokens": 14132, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 11893.23, + "sql_execution_elapsed_ms_total": 2.3, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..c1485414e2460f2413c159f046c6bf1032a116b5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:04:09.794509+00:00", + "ended_at": "2026-05-19T16:04:12.947144+00:00", + "elapsed_ms": 3152.61, + "returncode": 1, + "prompt_metrics": { + "chars": 4843, + "bytes_utf8": 4843, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f59a5ef91316ec5de7500a646d9b9f61ead84959 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_attempt_2.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:04:13.949230+00:00", + "ended_at": "2026-05-19T16:04:22.689904+00:00", + "elapsed_ms": 8740.62, + "prompt_metrics": { + "chars": 4843, + "bytes_utf8": 4843, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 651, + "bytes_utf8": 651, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 290, + "bytes_utf8": 290, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13774, + "cached_input_tokens": 12032, + "output_tokens": 358, + "reasoning_output_tokens": 266 + } + }, + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..30690446c1585c545bd05531c43276781309038f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 15, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..30690446c1585c545bd05531c43276781309038f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 15, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..d5887cafc1ef3e9158493b7786f208cc68454a0f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fa-f8c5-7ed3-a7a4-d2034f86a363"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..4deae2298338c565d4895e19cd8b0dec2add5de9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fa-f8c5-7ed3-a7a4-d2034f86a363"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..fea198635e95b0bcfd0546af253a0598467b2dcc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-090f-7a12-85c6-09b475a07322"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_low_support_group_count_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS \\\"support\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"support\\\" ASC, \\\"EI\\\"\\nLIMIT 15;\",\"notes\":\"Uses the Low-Support Group Count template with group_col bound to \\\"EI\\\" and top_k set to 15.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13774,"cached_input_tokens":12032,"output_tokens":358,"reasoning_output_tokens":266}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..1cd04d58312fbe3a529fa737c3b6ea2f379e6cfc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_response_attempt_2.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_low_support_group_count_v2\nSELECT\n \"EI\",\n COUNT(*) AS \"support\"\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY \"support\" ASC, \"EI\"\nLIMIT 15;","notes":"Uses the Low-Support Group Count template with group_col bound to \"EI\" and top_k set to 15."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7a459ed4a681551e/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..55ca827bab65fb550dc52d10eda0bb5394e28072 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/conversation.jsonl @@ -0,0 +1,4 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4975, "bytes_utf8": 4975, "lines": 132, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "status": "failed", "error": "AI CLI command failed with exit code 1: "} +{"attempt": 2, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_2.txt", "metrics": {"chars": 4975, "bytes_utf8": 4975, "lines": 132, "estimated_tokens": null}} +{"attempt": 2, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_2.txt", "raw_content_path": "cli/sql_response_attempt_2.raw.txt", "stderr_path": "cli/sql_stderr_attempt_2.txt", "metrics": {"chars": 394, "bytes_utf8": 394, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13795, "cached_input_tokens": 12032, "output_tokens": 401, "reasoning_output_tokens": 290}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..9e279c4d75e3e73ebed3485550606f2b66482146 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 2, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_7e6650ee5b089dda", + "api_calls": 0, + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 401, + "total_tokens": 14196, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 16661.37, + "sql_execution_elapsed_ms_total": 3.02, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ecaa02e09104d7bc93276d5884d7b41fd520cad4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:57:17.094114+00:00", + "ended_at": "2026-05-19T15:57:21.150061+00:00", + "elapsed_ms": 4055.92, + "returncode": 1, + "prompt_metrics": { + "chars": 4975, + "bytes_utf8": 4975, + "lines": 132, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..af133ec22edcff4a0c4915c4658ceddc384cb236 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_attempt_2.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:57:22.151975+00:00", + "ended_at": "2026-05-19T15:57:34.757509+00:00", + "elapsed_ms": 12605.45, + "prompt_metrics": { + "chars": 4975, + "bytes_utf8": 4975, + "lines": 132, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 757, + "bytes_utf8": 757, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 394, + "bytes_utf8": 394, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 401, + "reasoning_output_tokens": 290 + } + }, + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..826aab914671e0e88ff2034a6f55abb679a60f57 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,132 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_distinct_topk", + "bindings": { + "group_col": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 10, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..826aab914671e0e88ff2034a6f55abb679a60f57 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,132 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_distinct_topk", + "bindings": { + "group_col": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 10, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..8e302bc1d274dbf2ed859ee58df57b2653c37a1e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f4-acba-7aa1-ae38-4746d94c72c6"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..1dab77ffcc9a2a243af5b8b2c74559c2e80f5ed0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f4-acba-7aa1-ae38-4746d94c72c6"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..892cffd83dba1d2890c0e332638f864078d6cc8b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f4-c07a-7681-94e3-476c2445f758"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_clickbench_group_distinct_topk.\\nSELECT \\\"EI\\\", COUNT(DISTINCT \\\"ATRINS-DONOR-521\\\") AS \\\"distinct_entities\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"distinct_entities\\\" DESC\\nLIMIT 10;\",\"notes\":\"Applies the planned Top-k Groups by Distinct Entity Coverage template using \\\"EI\\\" as the grouping column and distinct \\\"ATRINS-DONOR-521\\\" values as entity coverage.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13795,"cached_input_tokens":12032,"output_tokens":401,"reasoning_output_tokens":290}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..dfc5594a86e20560bc9414b212af99a403a8dea7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_response_attempt_2.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_clickbench_group_distinct_topk.\nSELECT \"EI\", COUNT(DISTINCT \"ATRINS-DONOR-521\") AS \"distinct_entities\"\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY \"distinct_entities\" DESC\nLIMIT 10;","notes":"Applies the planned Top-k Groups by Distinct Entity Coverage template using \"EI\" as the grouping column and distinct \"ATRINS-DONOR-521\" values as entity coverage."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..54fcff1e7be37ee70756225c92f9a452bb52699f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI. +Result preview: [{"EI": "N", "distinct_entities": 1655}, {"EI": "IE", "distinct_entities": 762}, {"EI": "EI", "distinct_entities": 760}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..a8a643383d5b5d8fa17b111524fd4fb38e289e95 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/generated_sql.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_distribution_shift +-- variant_semantic_role: ranked_signal_view +-- template_id: tpl_clickbench_group_distinct_topk +-- query_record_id: v2q_c3_7e6650ee5b089dda +-- problem_id: v2p_c3_0a3bd66e59a7de80 +-- realization_mode: agent +-- source_kind: agent +SELECT "EI", COUNT(DISTINCT "ATRINS-DONOR-521") AS "distinct_entities" +FROM "c3" +GROUP BY "EI" +ORDER BY "distinct_entities" DESC +LIMIT 10; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..7bcf91e34e3970a07a89760df793ee1f69b10794 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 2, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_clickbench_group_distinct_topk.\nSELECT \"EI\", COUNT(DISTINCT \"ATRINS-DONOR-521\") AS \"distinct_entities\"\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY \"distinct_entities\" DESC\nLIMIT 10;", "result": "{\"query\": \"-- template_id: tpl_clickbench_group_distinct_topk.\\nSELECT \\\"EI\\\", COUNT(DISTINCT \\\"ATRINS-DONOR-521\\\") AS \\\"distinct_entities\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"distinct_entities\\\" DESC\\nLIMIT 10;\", \"columns\": [\"EI\", \"distinct_entities\"], \"rows\": [{\"EI\": \"N\", \"distinct_entities\": 1655}, {\"EI\": \"IE\", \"distinct_entities\": 762}, {\"EI\": \"EI\", \"distinct_entities\": 760}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 3.02}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..5efed1c1a4bb4ef5fbb0768e711ee66a8d8bac6b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/run_manifest.json @@ -0,0 +1,89 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T15:57:17.093153+00:00", + "ended_at": "2026-05-19T15:57:34.764906+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_7e6650ee5b089dda", + "problem_id": "v2p_c3_0a3bd66e59a7de80", + "dataset_id": "c3", + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "family_id": "subgroup_structure", + "canonical_subitem_id": "internal_profile_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "ranked_signal_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "support", + "extended_family": false, + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 10, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "entity_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift,subgroup_rank_order,subgroup_conditional_contrast", + "template_selection_mode=rule", + "problem_index_within_template=1", + "sql_variant_index=1/2", + "binding_index=0" + ], + "template_selection_mode": "rule", + "selected_template_rank": 1, + "problem_index_within_template": 1, + "sql_variant_index": 1, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_7e6650ee5b089dda.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_7e6650ee5b089dda", + "api_calls": 0, + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 401, + "total_tokens": 14196, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 16661.37, + "sql_execution_elapsed_ms_total": 3.02, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..9152584c6148a07709bdf38ec435f3932404e0e3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T15:57:21.150849+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 4055.92, "started_at": "2026-05-19T15:57:17.094114+00:00", "ended_at": "2026-05-19T15:57:21.150061+00:00", "prompt_metrics": {"chars": 4975, "bytes_utf8": 4975, "lines": 132, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40f4-acba-7aa1-ae38-4746d94c72c6\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T15:57:34.758362+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 12605.45, "started_at": "2026-05-19T15:57:22.151975+00:00", "ended_at": "2026-05-19T15:57:34.757509+00:00", "prompt_metrics": {"chars": 4975, "bytes_utf8": 4975, "lines": 132, "estimated_tokens": null}, "response_metrics": {"chars": 394, "bytes_utf8": 394, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13795, "cached_input_tokens": 12032, "output_tokens": 401, "reasoning_output_tokens": 290}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_clickbench_group_distinct_topk.\\nSELECT \\\"EI\\\", COUNT(DISTINCT \\\"ATRINS-DONOR-521\\\") AS \\\"distinct_entities\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"distinct_entities\\\" DESC\\nLIMIT 10;\",\"notes\":\"Applies the planned Top-k Groups by Distinct Entity Coverage template using \\\"EI\\\" as the grouping column and distinct \\\"ATRINS-DONOR-521\\\" values as entity coverage.\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..18a09779645b81342b4ed8892b579e971889e48e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/usage_summary.json @@ -0,0 +1,20 @@ +{ + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_7e6650ee5b089dda", + "api_calls": 0, + "input_tokens": 13795, + "cached_input_tokens": 12032, + "output_tokens": 401, + "total_tokens": 14196, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 16661.37, + "sql_execution_elapsed_ms_total": 3.02, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7e6650ee5b089dda/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2202a47b05277633e1507dcb3135a5178a53b97b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:32.631145+00:00", + "ended_at": "2026-05-19T16:08:35.476851+00:00", + "elapsed_ms": 2845.68, + "returncode": 1, + "prompt_metrics": { + "chars": 5032, + "bytes_utf8": 5032, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d19a0b80c875e3c5c3b43bfb6ce9fee2e28aa0cb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:36.478477+00:00", + "ended_at": "2026-05-19T16:08:39.819873+00:00", + "elapsed_ms": 3341.36, + "returncode": 1, + "prompt_metrics": { + "chars": 5032, + "bytes_utf8": 5032, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..0ae0eeaa22c77f941034baf597b6ad175f41901f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 19, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..0ae0eeaa22c77f941034baf597b6ad175f41901f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 19, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..b5cc49ef398b8b3c6162e67a3356899c2f1954d0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-fb72-7053-aef6-6807ff77ed8b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..5271016b390de6c1c834bfdfd5bee19b0d58e684 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-fb72-7053-aef6-6807ff77ed8b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..2c5b13764735998193e5ff635236b400d1b02143 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-0a80-7fa2-91d4-22fefe63483e"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..60a65d1f346338240d456e4ea3bd624e0046f949 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-0a80-7fa2-91d4-22fefe63483e"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..685cc7b4de5cada19afdc1b1f877394d44ee7c78 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/run_manifest.json @@ -0,0 +1,71 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:08:32.630112+00:00", + "ended_at": "2026-05-19T16:08:39.820910+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_7ecbce0d30bf3d2a", + "problem_id": "v2p_c3_8dd8674593604812", + "dataset_id": "c3", + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "family_id": "subgroup_structure", + "canonical_subitem_id": "subgroup_size_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "filtered_stable_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 19, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift", + "template_selection_mode=rule", + "problem_index_within_template=3", + "sql_variant_index=2/2", + "binding_index=74" + ], + "template_selection_mode": "rule", + "selected_template_rank": 7, + "problem_index_within_template": 3, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..e2657e83b040fa8c6a204a94dde8247fb8fa2f13 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_7ecbce0d30bf3d2a/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:08:35.477623+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 2845.68, "started_at": "2026-05-19T16:08:32.631145+00:00", "ended_at": "2026-05-19T16:08:35.476851+00:00", "prompt_metrics": {"chars": 5032, "bytes_utf8": 5032, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40fe-fb72-7053-aef6-6807ff77ed8b\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:08:39.820812+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3341.36, "started_at": "2026-05-19T16:08:36.478477+00:00", "ended_at": "2026-05-19T16:08:39.819873+00:00", "prompt_metrics": {"chars": 5032, "bytes_utf8": 5032, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40ff-0a80-7fa2-91d4-22fefe63483e\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..683530966327087828868406eecf8cc074546c7a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5176, "bytes_utf8": 5176, "lines": 133, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 523, "bytes_utf8": 523, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13878, "cached_input_tokens": 12032, "output_tokens": 623, "reasoning_output_tokens": 466}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..c3cf3cf3da601e7427c3f80c8a8124220d19846f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_8429d7ac54a313b8", + "api_calls": 0, + "input_tokens": 13878, + "cached_input_tokens": 12032, + "output_tokens": 623, + "total_tokens": 14501, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 13399.59, + "sql_execution_elapsed_ms_total": 1.19, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..f9f5d987c3c975060eb780cf128d7f6d745bd87b --- 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+ "output_tokens": 623, + "reasoning_output_tokens": 466 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..117248a9557a2d43440265b1844a1dee9285eb47 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "IE", + "top_k": 12, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..dfe06ca2445f07624668cbc777a42fe7251d2778 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-1d66-78f1-b18f-5319bd57f196"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_target_rate_extremes_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support,\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS focus_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nHAVING COUNT(*) >= 5\\nORDER BY focus_rate DESC, support ASC\\nLIMIT 12;\",\"notes\":\"Uses the requested Tail Target-Rate Extremes template with group_col=\\\"EI\\\" and target_col=\\\"EI\\\", targeting the class 'IE'. Since the grouping and target columns are the same, focus_rate becomes 1.0 for group IE and 0.0 for the other EI labels.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13878,"cached_input_tokens":12032,"output_tokens":623,"reasoning_output_tokens":466}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..cd86732713748dfcdd3721d6b0ba17acedf53914 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_target_rate_extremes_v2\nSELECT\n \"EI\",\n COUNT(*) AS support,\n AVG(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS focus_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nHAVING COUNT(*) >= 5\nORDER BY focus_rate DESC, support ASC\nLIMIT 12;","notes":"Uses the requested Tail Target-Rate Extremes template with group_col=\"EI\" and target_col=\"EI\", targeting the class 'IE'. Since the grouping and target columns are the same, focus_rate becomes 1.0 for group IE and 0.0 for the other EI labels."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8429d7ac54a313b8/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..c6e71141ba5fefd18951097c3910f212e3b2537b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5647, "bytes_utf8": 5647, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 778, "bytes_utf8": 778, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13972, "cached_input_tokens": 12032, "output_tokens": 508, "reasoning_output_tokens": 297}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..9662346fa8872a8b192586168c1973577ced4c30 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_884f7b524ad59e0b", + "api_calls": 0, + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 508, + "total_tokens": 14480, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 11737.27, + "sql_execution_elapsed_ms_total": 2.8, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..1f301506770c0e220ec54be7ab8451d16ace738f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:02:09.188661+00:00", + "ended_at": "2026-05-19T16:02:20.925966+00:00", + "elapsed_ms": 11737.27, + "prompt_metrics": { + "chars": 5647, + "bytes_utf8": 5647, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 1147, + "bytes_utf8": 1147, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 778, + "bytes_utf8": 778, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 508, + "reasoning_output_tokens": 297 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..4fdfba3d5404c8bb3074bc738598113e1cfb6dea --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_ratio_two_conditions", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 11, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..42e3b349055a409a32bd5c4d2666e64b6c349e6f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-21a1-78e2-a489-751a11976010"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_ratio_two_conditions\\nWITH grouped AS (\\n SELECT \\\"EI\\\",\\n SUM(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS numerator_count,\\n SUM(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS denominator_count\\n FROM \\\"c3\\\"\\n GROUP BY \\\"EI\\\"\\n)\\nSELECT \\\"EI\\\",\\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\\nFROM grouped\\nORDER BY condition_ratio DESC;\",\"notes\":\"Applied the requested template with group_col=\\\"EI\\\" and condition_col=\\\"EI\\\", using positive_value='N' and negative_value='IE'. Because the grouping column and condition column are the same, the result is structurally degenerate: the 'IE' group yields 0, while 'N' and 'EI' groups produce NULL due to division by zero.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13972,"cached_input_tokens":12032,"output_tokens":508,"reasoning_output_tokens":297}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..a5843e18a614a4c23c17afcc610f64d8b30ad64e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_ratio_two_conditions\nWITH grouped AS (\n SELECT \"EI\",\n SUM(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS denominator_count\n FROM \"c3\"\n GROUP BY \"EI\"\n)\nSELECT \"EI\",\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;","notes":"Applied the requested template with group_col=\"EI\" and condition_col=\"EI\", using positive_value='N' and negative_value='IE'. Because the grouping column and condition column are the same, the result is structurally degenerate: the 'IE' group yields 0, while 'N' and 'EI' groups produce NULL due to division by zero."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_884f7b524ad59e0b/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ef03f330700a7913f478565d6b79936e138da203 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:39.822337+00:00", + "ended_at": "2026-05-19T16:08:44.967591+00:00", + "elapsed_ms": 5145.23, + "returncode": 1, + "prompt_metrics": { + "chars": 5030, + "bytes_utf8": 5030, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a527f0e14bfacea45ab818047ccb1868b67e27b8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:45.969042+00:00", + "ended_at": "2026-05-19T16:08:50.346655+00:00", + "elapsed_ms": 4377.59, + "returncode": 1, + "prompt_metrics": { + "chars": 5030, + "bytes_utf8": 5030, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..6fe7f7dddc9f2ad1ce2d71601ba7cc6e02888db8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 10, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..6fe7f7dddc9f2ad1ce2d71601ba7cc6e02888db8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 10, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..7387d67910b50662fb5148d2ee70fc71b0d05894 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-179a-7df0-b6c4-a0fa596a95e7"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..dbdd5358d7724f01572db71e3cba90f3f73dcab2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-179a-7df0-b6c4-a0fa596a95e7"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..c9510bb942fb95dce512931918f09973be85f0ff --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-2f9c-70f2-9258-8e88dd82fbae"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..707c28818c64d219f84f5624f244838a73d418c2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-2f9c-70f2-9258-8e88dd82fbae"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..b00d7ac190f4534ee290bc8a826b0f4257c31a0a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/run_manifest.json @@ -0,0 +1,71 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:08:39.821310+00:00", + "ended_at": "2026-05-19T16:08:50.347407+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_8f2c3ce417b5d779", + "problem_id": "v2p_c3_97d7ad6cfe899cef", + "dataset_id": "c3", + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "family_id": "subgroup_structure", + "canonical_subitem_id": "subgroup_size_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "filtered_stable_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 10, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift", + "template_selection_mode=rule", + "problem_index_within_template=4", + "sql_variant_index=1/2", + "binding_index=75" + ], + "template_selection_mode": "rule", + "selected_template_rank": 7, + "problem_index_within_template": 4, + "sql_variant_index": 1, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..2c34657c9af35fb0ade03b7b238c81f803192112 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_8f2c3ce417b5d779/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:08:44.968329+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 5145.23, "started_at": "2026-05-19T16:08:39.822337+00:00", "ended_at": "2026-05-19T16:08:44.967591+00:00", "prompt_metrics": {"chars": 5030, "bytes_utf8": 5030, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40ff-179a-7df0-b6c4-a0fa596a95e7\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:08:50.347323+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 4377.59, "started_at": "2026-05-19T16:08:45.969042+00:00", "ended_at": "2026-05-19T16:08:50.346655+00:00", "prompt_metrics": {"chars": 5030, "bytes_utf8": 5030, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40ff-2f9c-70f2-9258-8e88dd82fbae\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0fadb044f854ff7b863aa110e7433cfac084a853 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:05:17.648609+00:00", + "ended_at": "2026-05-19T16:05:20.900095+00:00", + "elapsed_ms": 3251.46, + "returncode": 1, + "prompt_metrics": { + "chars": 4841, + "bytes_utf8": 4841, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..097a5e4117f6a59c47012a994757824b8e975ec2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:05:21.901847+00:00", + "ended_at": "2026-05-19T16:05:25.388772+00:00", + "elapsed_ms": 3486.89, + "returncode": 1, + "prompt_metrics": { + "chars": 4841, + "bytes_utf8": 4841, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..7f6d9963dbd39085205f3351b672a23302a8302d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role rare_extreme_view. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 14, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..7f6d9963dbd39085205f3351b672a23302a8302d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role rare_extreme_view. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 14, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..a897061c0490e3858361215f5e25980413937aaf --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-01cb-7672-9143-5025c5a545cc"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..3df14475df3d75372ebfe6740d1dfdeffbbbeeec --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-01cb-7672-9143-5025c5a545cc"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..4baf6cdd056b3934fdfef15bdb12cd0a8e58f7cc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-128f-7921-8870-c32e5f95f3da"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..0d2bf4c61e9b0c573cb19b4bcf4d3b5b9b366157 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-128f-7921-8870-c32e5f95f3da"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_976ff6af0dc199c4/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..01fcf1f3d7aab83bfea80c5e0417b0654be2e387 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5647, "bytes_utf8": 5647, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 618, "bytes_utf8": 618, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13972, "cached_input_tokens": 12032, "output_tokens": 634, "reasoning_output_tokens": 460}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..8700ca5d2685dbc84f22c6472114f8a0f01b5aad --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_982e95e62651328f", + "api_calls": 0, + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 634, + "total_tokens": 14606, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 12953.51, + "sql_execution_elapsed_ms_total": 1.88, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7b100fc9f4e243a073bc3614984025ad1219ff4c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:03:13.269153+00:00", + "ended_at": "2026-05-19T16:03:26.222687+00:00", + "elapsed_ms": 12953.51, + "prompt_metrics": { + "chars": 5647, + "bytes_utf8": 5647, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 983, + "bytes_utf8": 983, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 618, + "bytes_utf8": 618, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 634, + "reasoning_output_tokens": 460 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..fd29802c02de7c866feb53bd916451822e931a9d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_ratio_two_conditions", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 12, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..6480561db4a870a349173fc200cfaf8f903282fe --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fa-1c35-7742-b3d2-dc0441574fd1"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_ratio_two_conditions\\nWITH grouped AS (\\n SELECT \\\"EI\\\",\\n SUM(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS numerator_count,\\n SUM(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS denominator_count\\n FROM \\\"c3\\\"\\n GROUP BY \\\"EI\\\"\\n)\\nSELECT \\\"EI\\\",\\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\\nFROM grouped\\nORDER BY condition_ratio DESC;\",\"notes\":\"Uses the planned grouped-ratio template with both group_col and condition_col bound to \\\"EI\\\", comparing counts of EI='N' against EI='IE' within each EI group.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13972,"cached_input_tokens":12032,"output_tokens":634,"reasoning_output_tokens":460}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..967d48af8843e60687d05a8ae2f9caa8530c93fe --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_ratio_two_conditions\nWITH grouped AS (\n SELECT \"EI\",\n SUM(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS denominator_count\n FROM \"c3\"\n GROUP BY \"EI\"\n)\nSELECT \"EI\",\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;","notes":"Uses the planned grouped-ratio template with both group_col and condition_col bound to \"EI\", comparing counts of EI='N' against EI='IE' within each EI group."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..3de19e36e5abffba5585f59ca7261d89e37a3500 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI. +Result preview: [{"EI": "IE", "condition_ratio": 0.0}, {"EI": "EI", "condition_ratio": null}, {"EI": "N", "condition_ratio": null}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..a763160209d70f3cc21ccc1f7ab47f43ffb27fac --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/generated_sql.sql @@ -0,0 +1,24 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: conditional_dependency_structure +-- canonical_subitem_id: direction_consistency +-- intended_facet_id: conditional_rate_shift +-- variant_semantic_role: contrastive_conditional_view +-- template_id: tpl_m4_group_ratio_two_conditions +-- query_record_id: v2q_c3_982e95e62651328f +-- problem_id: v2p_c3_aef814350b9a9c7d +-- realization_mode: agent +-- source_kind: agent +WITH grouped AS ( + SELECT "EI", + SUM(CASE WHEN "EI" = 'N' THEN 1 ELSE 0 END) AS numerator_count, + SUM(CASE WHEN "EI" = 'IE' THEN 1 ELSE 0 END) AS denominator_count + FROM "c3" + GROUP BY "EI" +) +SELECT "EI", + CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio +FROM grouped +ORDER BY condition_ratio DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..9fe23d7d8e2aad6d63fad13acbe6eea964564495 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 1, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_m4_group_ratio_two_conditions\nWITH grouped AS (\n SELECT \"EI\",\n SUM(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS denominator_count\n FROM \"c3\"\n GROUP BY \"EI\"\n)\nSELECT \"EI\",\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", "result": "{\"query\": \"-- template_id: tpl_m4_group_ratio_two_conditions\\nWITH grouped AS (\\n SELECT \\\"EI\\\",\\n SUM(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS numerator_count,\\n SUM(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS denominator_count\\n FROM \\\"c3\\\"\\n GROUP BY \\\"EI\\\"\\n)\\nSELECT \\\"EI\\\",\\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\\nFROM grouped\\nORDER BY condition_ratio DESC;\", \"columns\": [\"EI\", \"condition_ratio\"], \"rows\": [{\"EI\": \"IE\", \"condition_ratio\": 0.0}, {\"EI\": \"EI\", \"condition_ratio\": null}, {\"EI\": \"N\", \"condition_ratio\": null}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 1.88}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..a2a878d2222906bcf253841b45ef3510fddf4d70 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/run_manifest.json @@ -0,0 +1,92 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:03:13.268293+00:00", + "ended_at": "2026-05-19T16:03:26.227423+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_982e95e62651328f", + "problem_id": "v2p_c3_aef814350b9a9c7d", + "dataset_id": "c3", + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "family_id": "conditional_dependency_structure", + "canonical_subitem_id": "direction_consistency", + "intended_facet_id": "conditional_rate_shift", + "variant_semantic_role": "contrastive_conditional_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 12, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "condition_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "notes": [ + "default_facets=conditional_rate_shift", + "template_selection_mode=rule", + "problem_index_within_template=7", + "sql_variant_index=1/1", + "binding_index=42" + ], + "template_selection_mode": "rule", + "selected_template_rank": 4, + "problem_index_within_template": 7, + "sql_variant_index": 1, + "sql_variant_total": 1 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_982e95e62651328f.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_982e95e62651328f", + "api_calls": 0, + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 634, + "total_tokens": 14606, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 12953.51, + "sql_execution_elapsed_ms_total": 1.88, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..c515bbb02278ec6cbb3305adccdd3dce1ab02c90 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/trace.jsonl @@ -0,0 +1 @@ +{"timestamp": "2026-05-19T16:03:26.223768+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 12953.51, "started_at": "2026-05-19T16:03:13.269153+00:00", "ended_at": "2026-05-19T16:03:26.222687+00:00", "prompt_metrics": {"chars": 5647, "bytes_utf8": 5647, "lines": 135, "estimated_tokens": null}, "response_metrics": {"chars": 618, "bytes_utf8": 618, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13972, "cached_input_tokens": 12032, "output_tokens": 634, "reasoning_output_tokens": 460}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_m4_group_ratio_two_conditions\\nWITH grouped AS (\\n SELECT \\\"EI\\\",\\n SUM(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS numerator_count,\\n SUM(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS denominator_count\\n FROM \\\"c3\\\"\\n GROUP BY \\\"EI\\\"\\n)\\nSELECT \\\"EI\\\",\\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\\nFROM grouped\\nORDER BY condition_ratio DESC;\",\"notes\":\"Uses the planned grouped-ratio template with both group_col and condition_col bound to \\\"EI\\\", comparing counts of EI='N' against EI='IE' within each EI group.\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..df312bf167c1a9f50da6fcce8dc2fc1d3b143253 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/usage_summary.json @@ -0,0 +1,20 @@ +{ + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_982e95e62651328f", + "api_calls": 0, + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 634, + "total_tokens": 14606, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 12953.51, + "sql_execution_elapsed_ms_total": 1.88, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_982e95e62651328f/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..2f990b65395f581ebe85f0e6780915646569a6f4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5180, "bytes_utf8": 5180, "lines": 133, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 423, "bytes_utf8": 423, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13878, "cached_input_tokens": 12032, "output_tokens": 335, "reasoning_output_tokens": 200}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..6a8e50560e051d112cf6aaaff9e1312be7640b78 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_9c064453570fc41f", + "api_calls": 0, + "input_tokens": 13878, + "cached_input_tokens": 12032, + "output_tokens": 335, + "total_tokens": 14213, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 8817.4, + "sql_execution_elapsed_ms_total": 1.34, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ca78cece909aff7dffaacedf96572443e2d5a75f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:07:49.186434+00:00", + "ended_at": "2026-05-19T16:07:58.003864+00:00", + "elapsed_ms": 8817.4, + "prompt_metrics": { + "chars": 5180, + "bytes_utf8": 5180, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 782, + "bytes_utf8": 782, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 423, + "bytes_utf8": 423, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13878, + "cached_input_tokens": 12032, + "output_tokens": 335, + "reasoning_output_tokens": 200 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..291b0020c5009434a4c9040d80c1b342c5a211c6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "IE", + "top_k": 17, + "top_n": 7, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..e71b80541dbb65e5137006507ca4725bb145dbda --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-51c4-7f32-8e78-c0407268695d"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_target_rate_extremes_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support,\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS focus_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nHAVING COUNT(*) >= 4\\nORDER BY focus_rate DESC, support ASC\\nLIMIT 17;\",\"notes\":\"Applied the provided Tail Target-Rate Extremes template with group_col=\\\"EI\\\", target_col=\\\"EI\\\", target_value='IE', min_support=4, and top_k=17.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13878,"cached_input_tokens":12032,"output_tokens":335,"reasoning_output_tokens":200}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..c1f12d8f5235fb730c3de7bbc2e55409b92358fc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_target_rate_extremes_v2\nSELECT\n \"EI\",\n COUNT(*) AS support,\n AVG(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS focus_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nHAVING COUNT(*) >= 4\nORDER BY focus_rate DESC, support ASC\nLIMIT 17;","notes":"Applied the provided Tail Target-Rate Extremes template with group_col=\"EI\", target_col=\"EI\", target_value='IE', min_support=4, and top_k=17."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_9c064453570fc41f/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..daab3a7c13e7f644aa0e11e4c77d234a8cb6e974 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:04:49.577456+00:00", + "ended_at": "2026-05-19T16:04:52.774039+00:00", + "elapsed_ms": 3196.55, + "returncode": 1, + "prompt_metrics": { + "chars": 4843, + "bytes_utf8": 4843, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..18bd919d10f61d98e4418a473d58d5117d335f23 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:04:53.776148+00:00", + "ended_at": "2026-05-19T16:04:57.224545+00:00", + "elapsed_ms": 3448.34, + "returncode": 1, + "prompt_metrics": { + "chars": 4843, + "bytes_utf8": 4843, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..2be999eca3e65324cfb875eabf05a8f34de85c62 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 17, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..2be999eca3e65324cfb875eabf05a8f34de85c62 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 17, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..4279f0e665920bf8dba40bbf5fdc87a0f98d04fc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-9431-7133-af8a-6edb0a25d1f4"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..fe91f26624ff16850abafa87a84dfd907fcd4317 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-9431-7133-af8a-6edb0a25d1f4"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..cf78c66b370d27935ae410a75d49c2172eb765f6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-a48e-7a90-8a7d-fb92cba96818"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..7870bf13c0a0940a1dc7ea04a49d24e45b7b1b7d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fb-a48e-7a90-8a7d-fb92cba96818"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a55f7a767d1f9eb4/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..6cdb5763ab00d036e568b1dd56d6d010eceb6614 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5177, "bytes_utf8": 5177, "lines": 133, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 466, "bytes_utf8": 466, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13878, "cached_input_tokens": 12032, "output_tokens": 508, "reasoning_output_tokens": 364}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..596060d941f34dbe81aa43469a1544a5e718ad59 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_a70925178fea8a98", + "api_calls": 0, + "input_tokens": 13878, + "cached_input_tokens": 12032, + "output_tokens": 508, + "total_tokens": 14386, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 12110.86, + "sql_execution_elapsed_ms_total": 1.24, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e21ac723a601579db22a1440514b5de1350f8383 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:05:36.746596+00:00", + "ended_at": "2026-05-19T16:05:48.857486+00:00", + "elapsed_ms": 12110.86, + "prompt_metrics": { + "chars": 5177, + "bytes_utf8": 5177, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 841, + "bytes_utf8": 841, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 466, + "bytes_utf8": 466, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13878, + "cached_input_tokens": 12032, + "output_tokens": 508, + "reasoning_output_tokens": 364 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..c5ee395554a131dc97a6e625199c335c755abe95 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "N", + "top_k": 10, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..54be7bb211d3d78b86e265a4262cd99ffd87d2b0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-4c7d-7190-931f-0cf8fa55715d"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_target_rate_extremes_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS \\\"support\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS \\\"focus_rate\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nHAVING COUNT(*) >= 5\\nORDER BY \\\"focus_rate\\\" DESC, \\\"support\\\" ASC\\nLIMIT 10;\",\"notes\":\"Uses the planned template exactly with group_col=\\\"EI\\\" and target_col=\\\"EI\\\". This returns each class label's support and the rate of rows in that group where EI='N'.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13878,"cached_input_tokens":12032,"output_tokens":508,"reasoning_output_tokens":364}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e0d27b074a56c005e27bbc8b63aab5c28138fd88 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_target_rate_extremes_v2\nSELECT\n \"EI\",\n COUNT(*) AS \"support\",\n AVG(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS \"focus_rate\"\nFROM \"c3\"\nGROUP BY \"EI\"\nHAVING COUNT(*) >= 5\nORDER BY \"focus_rate\" DESC, \"support\" ASC\nLIMIT 10;","notes":"Uses the planned template exactly with group_col=\"EI\" and target_col=\"EI\". This returns each class label's support and the rate of rows in that group where EI='N'."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a70925178fea8a98/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..8d69c052671a2259e06b08326ee6a2c6d5f3efdf --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5031, "bytes_utf8": 5031, "lines": 134, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 329, "bytes_utf8": 329, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13810, "cached_input_tokens": 12672, "output_tokens": 243, "reasoning_output_tokens": 144}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..82ac4802db9af3ce14a9beee7e5625b19336df23 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_a782b5e23da3e639", + "api_calls": 0, + "input_tokens": 13810, + "cached_input_tokens": 12672, + "output_tokens": 243, + "total_tokens": 14053, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7000.24, + "sql_execution_elapsed_ms_total": 0.85, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..ea500b3bf004fc218c18047864fa06ffb1691c87 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:19.695423+00:00", + "ended_at": "2026-05-19T16:09:26.695683+00:00", + "elapsed_ms": 7000.24, + "prompt_metrics": { + "chars": 5031, + "bytes_utf8": 5031, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 689, + "bytes_utf8": 689, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 329, + "bytes_utf8": 329, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13810, + "cached_input_tokens": 12672, + "output_tokens": 243, + "reasoning_output_tokens": 144 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..ac35503c14503e3d9c9b05b79694ea2480babe49 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 17, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..7b809bd6d46e16fbe91bed17b9c1cdfcd745461e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-b355-7c71-9e19-5f7dcbff95d5"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_clickbench_filtered_topk_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS support\\nFROM \\\"c3\\\"\\nWHERE \\\"EI\\\" = 'N'\\nGROUP BY \\\"EI\\\"\\nORDER BY support DESC\\nLIMIT 17;\",\"notes\":\"Applied the planned Filtered Top-k Group Count template with group_col=\\\"EI\\\" and predicate \\\"EI\\\" = 'N' on the single table \\\"c3\\\".\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13810,"cached_input_tokens":12672,"output_tokens":243,"reasoning_output_tokens":144}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..557b1d7e9622d13b03be9b631776cdb3111b3442 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_clickbench_filtered_topk_group_count\nSELECT \"EI\", COUNT(*) AS support\nFROM \"c3\"\nWHERE \"EI\" = 'N'\nGROUP BY \"EI\"\nORDER BY support DESC\nLIMIT 17;","notes":"Applied the planned Filtered Top-k Group Count template with group_col=\"EI\" and predicate \"EI\" = 'N' on the single table \"c3\"."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..6c17f042d88aa246f75bd1642f221ba7006d099a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI. +Result preview: [{"EI": "N", "support": 1655}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..0a923d81d4f6ec535ed7dd09b3a0d9c0ba78d1ac --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/generated_sql.sql @@ -0,0 +1,19 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: subgroup_structure +-- canonical_subitem_id: subgroup_size_stability +-- intended_facet_id: subgroup_distribution_shift +-- variant_semantic_role: count_distribution +-- template_id: tpl_clickbench_filtered_topk_group_count +-- query_record_id: v2q_c3_a782b5e23da3e639 +-- problem_id: v2p_c3_a5d4e63f791ae5d8 +-- realization_mode: agent +-- source_kind: agent +SELECT "EI", COUNT(*) AS support +FROM "c3" +WHERE "EI" = 'N' +GROUP BY "EI" +ORDER BY support DESC +LIMIT 17; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..09e1b9e5432b668f6dc8980a44de64faa01c9644 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 1, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_clickbench_filtered_topk_group_count\nSELECT \"EI\", COUNT(*) AS support\nFROM \"c3\"\nWHERE \"EI\" = 'N'\nGROUP BY \"EI\"\nORDER BY support DESC\nLIMIT 17;", "result": "{\"query\": \"-- template_id: tpl_clickbench_filtered_topk_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS support\\nFROM \\\"c3\\\"\\nWHERE \\\"EI\\\" = 'N'\\nGROUP BY \\\"EI\\\"\\nORDER BY support DESC\\nLIMIT 17;\", \"columns\": [\"EI\", \"support\"], \"rows\": [{\"EI\": \"N\", \"support\": 1655}], \"row_count_returned\": 1, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 0.85}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..3326f29d5f02efd3623c85540da6719757f75f7d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/run_manifest.json @@ -0,0 +1,91 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:09:19.694625+00:00", + "ended_at": "2026-05-19T16:09:26.698531+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_a782b5e23da3e639", + "problem_id": "v2p_c3_a5d4e63f791ae5d8", + "dataset_id": "c3", + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "family_id": "subgroup_structure", + "canonical_subitem_id": "subgroup_size_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "count_distribution", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "top_k": 17, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift", + "template_selection_mode=rule", + "problem_index_within_template=6", + "sql_variant_index=2/2", + "binding_index=77" + ], + "template_selection_mode": "rule", + "selected_template_rank": 7, + "problem_index_within_template": 6, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_a782b5e23da3e639.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_a782b5e23da3e639", + "api_calls": 0, + "input_tokens": 13810, + "cached_input_tokens": 12672, + "output_tokens": 243, + "total_tokens": 14053, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7000.24, + "sql_execution_elapsed_ms_total": 0.85, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..2657954015ef34a810886eecf14703adbc9dd019 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/trace.jsonl @@ -0,0 +1 @@ +{"timestamp": "2026-05-19T16:09:26.696428+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 7000.24, "started_at": "2026-05-19T16:09:19.695423+00:00", "ended_at": "2026-05-19T16:09:26.695683+00:00", "prompt_metrics": {"chars": 5031, "bytes_utf8": 5031, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 329, "bytes_utf8": 329, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13810, "cached_input_tokens": 12672, "output_tokens": 243, "reasoning_output_tokens": 144}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_clickbench_filtered_topk_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS support\\nFROM \\\"c3\\\"\\nWHERE \\\"EI\\\" = 'N'\\nGROUP BY \\\"EI\\\"\\nORDER BY support DESC\\nLIMIT 17;\",\"notes\":\"Applied the planned Filtered Top-k Group Count template with group_col=\\\"EI\\\" and predicate \\\"EI\\\" = 'N' on the single table \\\"c3\\\".\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..9ed47837201d3b3b967e59f9b0a7316505246671 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/usage_summary.json @@ -0,0 +1,20 @@ +{ + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_a782b5e23da3e639", + "api_calls": 0, + "input_tokens": 13810, + "cached_input_tokens": 12672, + "output_tokens": 243, + "total_tokens": 14053, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7000.24, + "sql_execution_elapsed_ms_total": 0.85, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_a782b5e23da3e639/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..e8971068a12130774179cda4322c3aed9a0cede4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5646, "bytes_utf8": 5646, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 605, "bytes_utf8": 605, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13972, "cached_input_tokens": 12032, "output_tokens": 605, "reasoning_output_tokens": 435}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..78c9a0d583b4daf2fd33591d795361518c3d3578 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_b09115c98c6926b3", + "api_calls": 0, + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 605, + "total_tokens": 14577, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 12083.08, + "sql_execution_elapsed_ms_total": 1.58, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7a28d1dda15bf97b56f3331f45ec6e4b1df7a6ff --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:03:01.180608+00:00", + "ended_at": "2026-05-19T16:03:13.263721+00:00", + "elapsed_ms": 12083.08, + "prompt_metrics": { + "chars": 5646, + "bytes_utf8": 5646, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 974, + "bytes_utf8": 974, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 605, + "bytes_utf8": 605, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 605, + "reasoning_output_tokens": 435 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..3a1171a213310448f58a50838c9f72c78b765e7d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_ratio_two_conditions", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 11, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..7ca34b717b50ebc892883f6caa17799a134113d6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-ecba-7f51-b89b-07786138eb5a"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_ratio_two_conditions\\nWITH grouped AS (\\n SELECT \\\"EI\\\",\\n SUM(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS numerator_count,\\n SUM(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS denominator_count\\n FROM \\\"c3\\\"\\n GROUP BY \\\"EI\\\"\\n)\\nSELECT \\\"EI\\\",\\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\\nFROM grouped\\nORDER BY condition_ratio DESC;\",\"notes\":\"Applies the planned grouped ratio template with group_col=\\\"EI\\\" and condition_col=\\\"EI\\\", computing the N-to-IE ratio within each EI label group.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13972,"cached_input_tokens":12032,"output_tokens":605,"reasoning_output_tokens":435}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..a8a8618aec78ec335b6f061cccd9b1f56503c2bf --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_ratio_two_conditions\nWITH grouped AS (\n SELECT \"EI\",\n SUM(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS denominator_count\n FROM \"c3\"\n GROUP BY \"EI\"\n)\nSELECT \"EI\",\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;","notes":"Applies the planned grouped ratio template with group_col=\"EI\" and condition_col=\"EI\", computing the N-to-IE ratio within each EI label group."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b09115c98c6926b3/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..e25c9c79396f2ce9db1b0b3c9a8a3799f5d8f7c9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:09.199612+00:00", + "ended_at": "2026-05-19T16:10:11.906190+00:00", + "elapsed_ms": 2706.55, + "returncode": 1, + "prompt_metrics": { + "chars": 5224, + "bytes_utf8": 5224, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2f680929b02cda0fd089aa4a37ef326535eb7790 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:12.908058+00:00", + "ended_at": "2026-05-19T16:10:15.611566+00:00", + "elapsed_ms": 2703.48, + "returncode": 1, + "prompt_metrics": { + "chars": 5224, + "bytes_utf8": 5224, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..589b862e59e7f1abc4ad8beb9a1fff6fc9465bbc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 10, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..589b862e59e7f1abc4ad8beb9a1fff6fc9465bbc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 10, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..ebd7b843766273aad25be381d0483b6d632081da --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-74bb-70a0-8243-2c0f2d357149"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..fd6d8c6fece7c93b5212d18d5b416e584374b40c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-74bb-70a0-8243-2c0f2d357149"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..c9b26e2c481bb884dccba781d74279fac5a7a862 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-831d-7673-883c-e929ce3ee806"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..b081ad7e440bcf0941e6de17afbc638d084d666c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-831d-7673-883c-e929ce3ee806"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_b45fbf924dac20cf/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a4398150ad29eb398cf11ab47fb6efc229821316 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:05.120822+00:00", + "ended_at": "2026-05-19T16:08:08.519820+00:00", + "elapsed_ms": 3398.98, + "returncode": 1, + "prompt_metrics": { + "chars": 5033, + "bytes_utf8": 5033, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..337aec3af9da07a23360a8b111023b5532f17d06 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:08:09.521327+00:00", + "ended_at": "2026-05-19T16:08:12.397804+00:00", + "elapsed_ms": 2876.45, + "returncode": 1, + "prompt_metrics": { + "chars": 5033, + "bytes_utf8": 5033, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..a8ddacdb31d1fe4d3e931ec9757ff6dba5720e34 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 17, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..a8ddacdb31d1fe4d3e931ec9757ff6dba5720e34 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 17, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..76c38e1b34659cdd37fb4080f4764b58d7885ad5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-8ffb-7781-bdef-b97852f7dce0"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..5af628e6de109e0bb31a528366dec871e955e78c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-8ffb-7781-bdef-b97852f7dce0"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..8c035a95c7a5dc91d25578d0e53b0ff0ac96ba80 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-a126-72d0-b26e-ce17e32c416d"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..0b139ae3e1c4adc4c7ac52dd86587da6daf1f2ae --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fe-a126-72d0-b26e-ce17e32c416d"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..3d4157668f81ca5edf2a0ab693b4afa766c81627 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/run_manifest.json @@ -0,0 +1,71 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:08:05.119901+00:00", + "ended_at": "2026-05-19T16:08:12.398629+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_ba0a2259ac5d9a78", + "problem_id": "v2p_c3_f7d7a0cd60badcab", + "dataset_id": "c3", + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "family_id": "subgroup_structure", + "canonical_subitem_id": "subgroup_size_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "filtered_stable_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 17, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift", + "template_selection_mode=rule", + "problem_index_within_template=1", + "sql_variant_index=2/2", + "binding_index=72" + ], + "template_selection_mode": "rule", + "selected_template_rank": 7, + "problem_index_within_template": 1, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..5256e07f4bdf27d841a0a40da482a4fdeaf785fd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ba0a2259ac5d9a78/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:08:08.520580+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3398.98, "started_at": "2026-05-19T16:08:05.120822+00:00", "ended_at": "2026-05-19T16:08:08.519820+00:00", "prompt_metrics": {"chars": 5033, "bytes_utf8": 5033, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40fe-8ffb-7781-bdef-b97852f7dce0\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:08:12.398536+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 2876.45, "started_at": "2026-05-19T16:08:09.521327+00:00", "ended_at": "2026-05-19T16:08:12.397804+00:00", "prompt_metrics": {"chars": 5033, "bytes_utf8": 5033, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40fe-a126-72d0-b26e-ce17e32c416d\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0c41f75df9ccbe86e7686831fcd4cb3aec04c951 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:06:16.763876+00:00", + "ended_at": "2026-05-19T16:06:19.853110+00:00", + "elapsed_ms": 3089.19, + "returncode": 1, + "prompt_metrics": { + "chars": 5178, + "bytes_utf8": 5178, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a3db97f9875a63d9d411ceb4f6077f526fea1062 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:06:20.854684+00:00", + "ended_at": "2026-05-19T16:06:23.886865+00:00", + "elapsed_ms": 3032.14, + "returncode": 1, + "prompt_metrics": { + "chars": 5178, + "bytes_utf8": 5178, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..b9dd1524c02f126909e92e000d095eea3c35ea61 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "EI", + "top_k": 12, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..b9dd1524c02f126909e92e000d095eea3c35ea61 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role focused_target_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "EI", + "top_k": 12, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..18149763360e1ee9a21189e75cf661e9e06ad16d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-e8c1-76c3-9cf0-86d7a8dfdfa5"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..efabccf8257cf63b907429384a25f77cefa3476d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-e8c1-76c3-9cf0-86d7a8dfdfa5"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..6ccac3e0dee7fa818bebce30fd42a2fec004a124 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-f8c6-7c42-80f3-36ca6035ce91"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..f57d9c0aef96ea839996f66022f368be929106f1 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-f8c6-7c42-80f3-36ca6035ce91"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb282e174b0f16c1/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fafbff10ee75a18ffc9edcd603cda96e7d8f5e8a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:58:44.657973+00:00", + "ended_at": "2026-05-19T15:58:47.477597+00:00", + "elapsed_ms": 2819.58, + "returncode": 1, + "prompt_metrics": { + "chars": 5018, + "bytes_utf8": 5018, + "lines": 132, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..8aa45984d55396833717e1ccc51569b3f7e72969 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:58:48.479079+00:00", + "ended_at": "2026-05-19T15:58:51.780706+00:00", + "elapsed_ms": 3301.59, + "returncode": 1, + "prompt_metrics": { + "chars": 5018, + "bytes_utf8": 5018, + "lines": 132, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..d456d4e35a3f076b56392d4a38e52bc912be1055 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,132 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_distinct_topk", + "bindings": { + "group_col": "EI", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 10, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..d456d4e35a3f076b56392d4a38e52bc912be1055 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,132 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_distinct_topk", + "bindings": { + "group_col": "EI", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 10, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..02bb6b7fbb7793475fdd5355e827cbefe3258ba1 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-02ee-70d2-becf-82beb3a635a1"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..deb83d50ab52dfc63a6404569f356bc12fc0335c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-02ee-70d2-becf-82beb3a635a1"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..8b607d76ce4767c5dbb97d1101156899f0e1309c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-11b1-71d3-80a9-74dee5eb1334"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..2ffcd4b4acb83f39dbef247cfb781983cc427d53 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-11b1-71d3-80a9-74dee5eb1334"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bb35f125de9a914c/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..10820c15b198c7d99f74a31da17663b2d4c7eadd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:05:48.862388+00:00", + "ended_at": "2026-05-19T16:05:52.101184+00:00", + "elapsed_ms": 3238.77, + "returncode": 1, + "prompt_metrics": { + "chars": 5177, + "bytes_utf8": 5177, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..79a9b20e171effcc89d9163619a6c40b8aa0f8c5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:05:53.103105+00:00", + "ended_at": "2026-05-19T16:05:56.854556+00:00", + "elapsed_ms": 3751.41, + "returncode": 1, + "prompt_metrics": { + "chars": 5177, + "bytes_utf8": 5177, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..80a9474397c1f96aec58c75959bcca08dd1812b7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "N", + "top_k": 15, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..80a9474397c1f96aec58c75959bcca08dd1812b7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "N", + "top_k": 15, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..49ed33fdf4b7501b0290d251026a1907823223c6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-7bc9-70b3-953c-11c07162a801"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..548ada6ce795ff60a71d2121fa05825ce716a275 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-7bc9-70b3-953c-11c07162a801"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..9a7984acf6349eea673152a3980e107e5a6b7b5b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-8c6e-7a62-b3f5-4077529d3865"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..202ab5bf2444ac869e6a210376fa44e5d16799eb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fc-8c6e-7a62-b3f5-4077529d3865"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_bc5c9dd4e49d8ff5/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..1edfaaf8d2d61c1970b7d9d939b1c3f8f9e7c663 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/conversation.jsonl @@ -0,0 +1,4 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5091, "bytes_utf8": 5091, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "status": "failed", "error": "AI CLI command failed with exit code 1: "} +{"attempt": 2, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_2.txt", "metrics": {"chars": 5091, "bytes_utf8": 5091, "lines": 135, "estimated_tokens": null}} +{"attempt": 2, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_2.txt", "raw_content_path": "cli/sql_response_attempt_2.raw.txt", "stderr_path": "cli/sql_stderr_attempt_2.txt", "metrics": {"chars": 510, "bytes_utf8": 510, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13825, "cached_input_tokens": 12032, "output_tokens": 314, "reasoning_output_tokens": 176}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..1dae7db6722647873d30836f03753f31e3456d12 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 2, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_be7a0537ded36264", + "api_calls": 0, + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 314, + "total_tokens": 14139, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 12095.58, + "sql_execution_elapsed_ms_total": 2.76, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a6a0c187424747ac50a0ebf402febbf879d11451 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:01:09.753306+00:00", + "ended_at": "2026-05-19T16:01:13.046423+00:00", + "elapsed_ms": 3293.09, + "returncode": 1, + "prompt_metrics": { + "chars": 5091, + "bytes_utf8": 5091, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4c0c1be0ec648e939f79bb1a1b65ed2226ff8bff --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_attempt_2.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:01:14.048825+00:00", + "ended_at": "2026-05-19T16:01:22.851360+00:00", + "elapsed_ms": 8802.49, + "prompt_metrics": { + "chars": 5091, + "bytes_utf8": 5091, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 869, + "bytes_utf8": 869, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 510, + "bytes_utf8": 510, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 314, + "reasoning_output_tokens": 176 + } + }, + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..73de8b7336f32c922df73adaac740c49ce436d4d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 13, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..73de8b7336f32c922df73adaac740c49ce436d4d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 13, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..022bca91f47173d5e9366441fcffdb7818add640 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-39a7-7240-a724-23c2675b75c7"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..662a27760cf6cf01ed2a00814662eda6936bd67e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-39a7-7240-a724-23c2675b75c7"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..ca07c4aa947bd38112a4bf27aac1a927a72c7e1a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-4a59-7231-891a-efe6a6425a3d"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Applied the planned Grouped Condition Rate template with group_col=\\\"EI\\\" and condition_col=\\\"EI\\\" on table \\\"c3\\\". Because the grouping column and condition column are the same, this measures the within-group proportion of rows labeled 'N', which yields 1 for group 'N' and 0 for other EI groups.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13825,"cached_input_tokens":12032,"output_tokens":314,"reasoning_output_tokens":176}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..49dfc8c65b01b30f95bad6e2b2b224605e1fa1eb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_response_attempt_2.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;","notes":"Applied the planned Grouped Condition Rate template with group_col=\"EI\" and condition_col=\"EI\" on table \"c3\". Because the grouping column and condition column are the same, this measures the within-group proportion of rows labeled 'N', which yields 1 for group 'N' and 0 for other EI groups."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..1e4f6cd3cfffcc53a6256d3b7f7b3dacf48b7517 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI. +Result preview: [{"EI": "N", "condition_rate": 1.0}, {"EI": "IE", "condition_rate": 0.0}, {"EI": "EI", "condition_rate": 0.0}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..f870103127d3ca4a9f49536e10fd361b8818ff95 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/generated_sql.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: conditional_dependency_structure +-- canonical_subitem_id: dependency_strength_similarity +-- intended_facet_id: pairwise_conditional_dependency +-- variant_semantic_role: within_group_proportion +-- template_id: tpl_m4_group_condition_rate +-- query_record_id: v2q_c3_be7a0537ded36264 +-- problem_id: v2p_c3_da54a2f048205a1d +-- realization_mode: agent +-- source_kind: agent +SELECT "EI", + AVG(CASE WHEN "EI" = 'N' THEN 1 ELSE 0 END) AS condition_rate +FROM "c3" +GROUP BY "EI" +ORDER BY condition_rate DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..ececad83872ef6a5096b01a2d06aed699ed9010a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 2, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;", "result": "{\"query\": \"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\", \"columns\": [\"EI\", \"condition_rate\"], \"rows\": [{\"EI\": \"N\", \"condition_rate\": 1.0}, {\"EI\": \"IE\", \"condition_rate\": 0.0}, {\"EI\": \"EI\", \"condition_rate\": 0.0}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 2.76}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..e3a61804ebf475d740a90225b30c51ada935e05f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/run_manifest.json @@ -0,0 +1,92 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:01:09.752441+00:00", + "ended_at": "2026-05-19T16:01:22.858435+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_be7a0537ded36264", + "problem_id": "v2p_c3_da54a2f048205a1d", + "dataset_id": "c3", + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "family_id": "conditional_dependency_structure", + "canonical_subitem_id": "dependency_strength_similarity", + "intended_facet_id": "pairwise_conditional_dependency", + "variant_semantic_role": "within_group_proportion", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 13, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "condition_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "notes": [ + "default_facets=pairwise_conditional_dependency", + "template_selection_mode=rule", + "problem_index_within_template=5", + "sql_variant_index=1/2", + "binding_index=28" + ], + "template_selection_mode": "rule", + "selected_template_rank": 3, + "problem_index_within_template": 5, + "sql_variant_index": 1, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_be7a0537ded36264.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_be7a0537ded36264", + "api_calls": 0, + "input_tokens": 13825, + "cached_input_tokens": 12032, + "output_tokens": 314, + "total_tokens": 14139, + "cost_usd": 0.0, + "ai_cli_calls": 2, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 12095.58, + "sql_execution_elapsed_ms_total": 2.76, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..3d28f41b997985cdf501a931a8e1bfb296c9ad08 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_be7a0537ded36264/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:01:13.047323+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3293.09, "started_at": "2026-05-19T16:01:09.753306+00:00", "ended_at": "2026-05-19T16:01:13.046423+00:00", "prompt_metrics": {"chars": 5091, "bytes_utf8": 5091, "lines": 135, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40f8-39a7-7240-a724-23c2675b75c7\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:01:22.852895+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 8802.49, "started_at": "2026-05-19T16:01:14.048825+00:00", "ended_at": "2026-05-19T16:01:22.851360+00:00", "prompt_metrics": {"chars": 5091, "bytes_utf8": 5091, "lines": 135, "estimated_tokens": null}, "response_metrics": {"chars": 510, "bytes_utf8": 510, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13825, "cached_input_tokens": 12032, "output_tokens": 314, "reasoning_output_tokens": 176}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Applied the planned Grouped Condition Rate template with group_col=\\\"EI\\\" and condition_col=\\\"EI\\\" on table \\\"c3\\\". Because the grouping column and condition column are the same, this measures the within-group proportion of rows labeled 'N', which yields 1 for group 'N' and 0 for other EI groups.\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..a842a13676f1fc9d10da243346067335697b320c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:15.613625+00:00", + "ended_at": "2026-05-19T16:10:18.826476+00:00", + "elapsed_ms": 3212.83, + "returncode": 1, + "prompt_metrics": { + "chars": 5183, + "bytes_utf8": 5183, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..b14da455dcd6704e9e468e06682086408b0fbf0f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:19.828059+00:00", + "ended_at": "2026-05-19T16:10:22.565604+00:00", + "elapsed_ms": 2737.51, + "returncode": 1, + "prompt_metrics": { + "chars": 5183, + "bytes_utf8": 5183, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..8cfe6c6ff5c4a6881ce38451a7b1220f3c59e7e5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 11, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..8cfe6c6ff5c4a6881ce38451a7b1220f3c59e7e5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "entity_col": "ATRINS-DONOR-521", + "top_k": 11, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..ee715cab80bf6092f3154e15e1c8f263e65e72ff --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-8dbd-7293-8e60-85283dcec464"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..fcb5bfca1d1cfb26c2de5e0a2fe164f4160be904 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-8dbd-7293-8e60-85283dcec464"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..82876b956b114911907a1e3c619a822496fad0ea --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-9e47-7d23-8171-f88c4f00fcbf"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..6ada3d6eb646d156b2bc4c2213b0942a605086db --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-9e47-7d23-8171-f88c4f00fcbf"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ca343fe1bd64f7cb/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..57b040d47e10bd1da2c581bf98bc2e19601c9d35 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:32.281724+00:00", + "ended_at": "2026-05-19T16:10:35.131920+00:00", + "elapsed_ms": 2850.17, + "returncode": 1, + "prompt_metrics": { + "chars": 5223, + "bytes_utf8": 5223, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..752397002d0a0a44273950c449967215c0dde41c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:36.133828+00:00", + "ended_at": "2026-05-19T16:10:39.411503+00:00", + "elapsed_ms": 3277.64, + "returncode": 1, + "prompt_metrics": { + "chars": 5223, + "bytes_utf8": 5223, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..87adf8641893814192bca5a19651e6b484b3831a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 12, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..87adf8641893814192bca5a19651e6b484b3831a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 12, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..bd812baef056a1ab3ef5bd12f6620b564205b761 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-cee6-7cd1-8eb2-29df82fbc500"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..ecf219225fb99d10306ed013565e91d152fd2cf8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-cee6-7cd1-8eb2-29df82fbc500"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..5d7bc03408a13954cbd661467278e9a786836d07 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-dde4-7f71-b634-293fd0564306"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..c28f57a067fdebdb4ffdd13a18d46a19dc2451b0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-dde4-7f71-b634-293fd0564306"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..95d93fed5330dc76f7bd6e3961a8a7f45627e75b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/run_manifest.json @@ -0,0 +1,73 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:10:32.280796+00:00", + "ended_at": "2026-05-19T16:10:39.412386+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_d35378d6148b64d2", + "problem_id": "v2p_c3_892b8de10860e2da", + "dataset_id": "c3", + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "family_id": "subgroup_structure", + "canonical_subitem_id": "internal_profile_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "ranked_signal_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "support", + "extended_family": false, + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 12, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "entity_col", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift,subgroup_rank_order,subgroup_conditional_contrast", + "template_selection_mode=rule", + "problem_index_within_template=4", + "sql_variant_index=1/1", + "binding_index=87" + ], + "template_selection_mode": "rule", + "selected_template_rank": 8, + "problem_index_within_template": 4, + "sql_variant_index": 1, + "sql_variant_total": 1 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..a2f1631bbe146940ddf83c83f1633ad3a8ddff85 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d35378d6148b64d2/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:10:35.132946+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 2850.17, "started_at": "2026-05-19T16:10:32.281724+00:00", "ended_at": "2026-05-19T16:10:35.131920+00:00", "prompt_metrics": {"chars": 5223, "bytes_utf8": 5223, "lines": 136, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4100-cee6-7cd1-8eb2-29df82fbc500\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:10:39.412295+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3277.64, "started_at": "2026-05-19T16:10:36.133828+00:00", "ended_at": "2026-05-19T16:10:39.411503+00:00", "prompt_metrics": {"chars": 5223, "bytes_utf8": 5223, "lines": 136, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4100-dde4-7f71-b634-293fd0564306\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..3d9074148f35fbeb3fc511b5e91df429b5d2327d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:02:20.936918+00:00", + "ended_at": "2026-05-19T16:02:24.258584+00:00", + "elapsed_ms": 3321.63, + "returncode": 1, + "prompt_metrics": { + "chars": 5646, + "bytes_utf8": 5646, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d0e1442d51d29ed6b9420fb25b13340de7b86d37 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:02:25.259986+00:00", + "ended_at": "2026-05-19T16:02:28.556901+00:00", + "elapsed_ms": 3296.82, + "returncode": 1, + "prompt_metrics": { + "chars": 5646, + "bytes_utf8": 5646, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..40ccea50ff56fc56ccf8dac65489444fa87509dd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_ratio_two_conditions", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 12, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..40ccea50ff56fc56ccf8dac65489444fa87509dd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_ratio_two_conditions", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 12, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..187670a6d5414e423e7eb235514975a1941e482c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-4fa6-7e71-bd67-fca420e3a602"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..03a862b7febca942120323d64f3137becbb5300c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-4fa6-7e71-bd67-fca420e3a602"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..d8b540caae33ce255735576908ddfc735228d49f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-607c-7270-82b2-a1570f7ae0b5"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..4386be9721415349ff5f95e31ddd61f89107fb99 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-607c-7270-82b2-a1570f7ae0b5"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..63e68b209d978564f7bf203df12e2736c233e832 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/run_manifest.json @@ -0,0 +1,72 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:02:20.935229+00:00", + "ended_at": "2026-05-19T16:02:28.557752+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_d57e5f5346724f40", + "problem_id": "v2p_c3_cf2f7ee081b7499c", + "dataset_id": "c3", + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "family_id": "conditional_dependency_structure", + "canonical_subitem_id": "direction_consistency", + "intended_facet_id": "conditional_rate_shift", + "variant_semantic_role": "contrastive_conditional_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 12, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "condition_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "notes": [ + "default_facets=conditional_rate_shift", + "template_selection_mode=rule", + "problem_index_within_template=2", + "sql_variant_index=1/1", + "binding_index=37" + ], + "template_selection_mode": "rule", + "selected_template_rank": 4, + "problem_index_within_template": 2, + "sql_variant_index": 1, + "sql_variant_total": 1 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..2ae668ce052bf03cb824115fb0c3e82fd956768f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d57e5f5346724f40/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:02:24.259273+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3321.63, "started_at": "2026-05-19T16:02:20.936918+00:00", "ended_at": "2026-05-19T16:02:24.258584+00:00", "prompt_metrics": {"chars": 5646, "bytes_utf8": 5646, "lines": 135, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40f9-4fa6-7e71-bd67-fca420e3a602\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:02:28.557659+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3296.82, "started_at": "2026-05-19T16:02:25.259986+00:00", "ended_at": "2026-05-19T16:02:28.556901+00:00", "prompt_metrics": {"chars": 5646, "bytes_utf8": 5646, "lines": 135, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e40f9-607c-7270-82b2-a1570f7ae0b5\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7345e40f40755fcc8a0dbd92ce271e656dd43320 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:07:00.550744+00:00", + "ended_at": "2026-05-19T16:07:03.670491+00:00", + "elapsed_ms": 3119.72, + "returncode": 1, + "prompt_metrics": { + "chars": 5176, + "bytes_utf8": 5176, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..719b0609996ef102a5c1dd0b1068f04132d2f330 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:07:04.672070+00:00", + "ended_at": "2026-05-19T16:07:07.735223+00:00", + "elapsed_ms": 3063.12, + "returncode": 1, + "prompt_metrics": { + "chars": 5176, + "bytes_utf8": 5176, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..8ffd3395605d050ebf6c0c8cd17df5152704dd09 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "EI", + "top_k": 10, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..8ffd3395605d050ebf6c0c8cd17df5152704dd09 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "EI", + "top_k": 10, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..9e0c0536c7e5e294b83d5e7b4511c84b62fbd623 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-93c9-71d0-9d67-ddef84c7aa4a"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..1ebff5544e6fa95ad28a6d3991b72c007638a6ef --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-93c9-71d0-9d67-ddef84c7aa4a"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..8bb78a71c6a94b7fb57aee07e1ab3b087d9c735b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-a3eb-76d1-b2b4-aba4aed03f15"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..37f71154938edfae184e322bf5521d645a8adfa9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-a3eb-76d1-b2b4-aba4aed03f15"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d5de194dc9952dd7/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..a6b3f66944c4e2d4ed525ae1ff8f52dfc096738f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5647, "bytes_utf8": 5647, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 722, "bytes_utf8": 722, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13972, "cached_input_tokens": 12032, "output_tokens": 882, "reasoning_output_tokens": 676}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..f18c854356a815d7d1d2b76fd4c9a7ae6d2500fb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_d61a8a924a0e9c30", + "api_calls": 0, + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 882, + "total_tokens": 14854, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 16658.14, + "sql_execution_elapsed_ms_total": 1.94, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..0d6e4f3c2ca4883bd32b7ee8ba83ee0a01d77c9f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:02:28.559159+00:00", + "ended_at": "2026-05-19T16:02:45.217337+00:00", + "elapsed_ms": 16658.14, + "prompt_metrics": { + "chars": 5647, + "bytes_utf8": 5647, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 1119, + "bytes_utf8": 1119, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 722, + "bytes_utf8": 722, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13972, + "cached_input_tokens": 12032, + "output_tokens": 882, + "reasoning_output_tokens": 676 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e5d34d70a6316439e147512bcbaea5096f80b70d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_ratio_two_conditions", + "template_name": "Grouped Ratio of Two Conditions", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Ratio of Two Conditions to probe direction_consistency with semantic role contrastive_conditional_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_ratio_two_conditions", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 13, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col},\n SUM(CASE WHEN {condition_col} = {positive_value} THEN 1 ELSE 0 END) AS numerator_count,\n SUM(CASE WHEN {condition_col} = {negative_value} THEN 1 ELSE 0 END) AS denominator_count\n FROM {table}\n GROUP BY {group_col}\n)\nSELECT {group_col},\n CAST(numerator_count AS FLOAT) / NULLIF(denominator_count, 0) AS condition_ratio\nFROM grouped\nORDER BY condition_ratio DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..3f6ed200e44105c15f9fc82f540fbc042c8e74a2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f9-6d6f-72f2-9d1d-66fa33908e37"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_ratio_two_conditions\\nWITH \\\"grouped\\\" AS (\\n SELECT \\\"EI\\\",\\n SUM(CASE WHEN \\\"EI\\\" = 'N' THEN 1 ELSE 0 END) AS \\\"numerator_count\\\",\\n SUM(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS \\\"denominator_count\\\"\\n FROM \\\"c3\\\"\\n GROUP BY \\\"EI\\\"\\n)\\nSELECT \\\"EI\\\",\\n CAST(\\\"numerator_count\\\" AS FLOAT) / NULLIF(\\\"denominator_count\\\", 0) AS \\\"condition_ratio\\\"\\nFROM \\\"grouped\\\"\\nORDER BY \\\"condition_ratio\\\" DESC;\",\"notes\":\"Uses the required grouped-ratio template with \\\"EI\\\" as both the grouping and condition column, comparing counts of 'N' against counts of 'IE' within each label group. Groups with no 'IE' rows produce NULL ratios because of NULLIF.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13972,"cached_input_tokens":12032,"output_tokens":882,"reasoning_output_tokens":676}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e4b85fcb82735ee38961d029b9e4993a805fc6eb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_ratio_two_conditions\nWITH \"grouped\" AS (\n SELECT \"EI\",\n SUM(CASE WHEN \"EI\" = 'N' THEN 1 ELSE 0 END) AS \"numerator_count\",\n SUM(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS \"denominator_count\"\n FROM \"c3\"\n GROUP BY \"EI\"\n)\nSELECT \"EI\",\n CAST(\"numerator_count\" AS FLOAT) / NULLIF(\"denominator_count\", 0) AS \"condition_ratio\"\nFROM \"grouped\"\nORDER BY \"condition_ratio\" DESC;","notes":"Uses the required grouped-ratio template with \"EI\" as both the grouping and condition column, comparing counts of 'N' against counts of 'IE' within each label group. Groups with no 'IE' rows produce NULL ratios because of NULLIF."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d61a8a924a0e9c30/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..222104fbfd0bd8d00638de33e02aa097b3b275ce --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:22.567671+00:00", + "ended_at": "2026-05-19T16:10:27.752982+00:00", + "elapsed_ms": 5185.28, + "returncode": 1, + "prompt_metrics": { + "chars": 5181, + "bytes_utf8": 5181, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..aa5d965b99f56c61122d41f7f5dee1bdf72da607 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:10:28.754654+00:00", + "ended_at": "2026-05-19T16:10:32.279636+00:00", + "elapsed_ms": 3524.95, + "returncode": 1, + "prompt_metrics": { + "chars": 5181, + "bytes_utf8": 5181, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e119468697a6eeef9dfb2da8d793b786f3471a8d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "entity_col": "ATRINS-DONOR-521", + "top_k": 16, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e119468697a6eeef9dfb2da8d793b786f3471a8d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "entity_col": "ATRINS-DONOR-521", + "top_k": 16, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..b5bfd76edf5f84981a7ccab7ade41199ee9af0aa --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-a8e0-7ca0-81c5-259425aa8c66"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..07e7dd949d3ffa1d6766c01acf28c81325bb93e3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-a8e0-7ca0-81c5-259425aa8c66"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..d1c65304584463259af2532abe924f680f1ef408 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-c10c-76b2-be89-c404a4de2cf5"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..f48cb13fe370f7b316fd5922c7ce30e99e5b5b9e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-c10c-76b2-be89-c404a4de2cf5"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..cd4466e3f2c001d66e229d8c1053d1cdfe123997 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/run_manifest.json @@ -0,0 +1,73 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:10:22.566748+00:00", + "ended_at": "2026-05-19T16:10:32.280466+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_d86433ca65b5af68", + "problem_id": "v2p_c3_880c4b8566d57dd3", + "dataset_id": "c3", + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "family_id": "subgroup_structure", + "canonical_subitem_id": "internal_profile_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "ranked_signal_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "support", + "extended_family": false, + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "N", + "entity_col": "ATRINS-DONOR-521", + "top_k": 16, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "entity_col", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift,subgroup_rank_order,subgroup_conditional_contrast", + "template_selection_mode=rule", + "problem_index_within_template=3", + "sql_variant_index=2/2", + "binding_index=86" + ], + "template_selection_mode": "rule", + "selected_template_rank": 8, + "problem_index_within_template": 3, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..7142b6482fc1634e4c78f2d3a5ee767fee01ab4a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d86433ca65b5af68/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:10:27.753739+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 5185.28, "started_at": "2026-05-19T16:10:22.567671+00:00", "ended_at": "2026-05-19T16:10:27.752982+00:00", "prompt_metrics": {"chars": 5181, "bytes_utf8": 5181, "lines": 136, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4100-a8e0-7ca0-81c5-259425aa8c66\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:10:32.280379+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3524.95, "started_at": "2026-05-19T16:10:28.754654+00:00", "ended_at": "2026-05-19T16:10:32.279636+00:00", "prompt_metrics": {"chars": 5181, "bytes_utf8": 5181, "lines": 136, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4100-c10c-76b2-be89-c404a4de2cf5\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..e6725d7fa077f1f47ba69841515108941667a988 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5018, "bytes_utf8": 5018, "lines": 132, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 408, "bytes_utf8": 408, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13821, "cached_input_tokens": 12032, "output_tokens": 383, "reasoning_output_tokens": 255}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..08ac2b84383457541628001d1ce22a02c65b01a2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_d900d246d44f20fa", + "api_calls": 0, + "input_tokens": 13821, + "cached_input_tokens": 12032, + "output_tokens": 383, + "total_tokens": 14204, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 9504.97, + "sql_execution_elapsed_ms_total": 4.06, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2a5560f1f09b9456ddf5aac407b29ed3f6f03417 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:58:13.055233+00:00", + "ended_at": "2026-05-19T15:58:22.560239+00:00", + "elapsed_ms": 9504.97, + "prompt_metrics": { + "chars": 5018, + "bytes_utf8": 5018, + "lines": 132, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 767, + "bytes_utf8": 767, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 408, + "bytes_utf8": 408, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13821, + "cached_input_tokens": 12032, + "output_tokens": 383, + "reasoning_output_tokens": 255 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..85d8810419788029845cf237cbc1aa083c712835 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,132 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_distinct_topk", + "template_name": "Top-k Groups by Distinct Entity Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Top-k Groups by Distinct Entity Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_distinct_topk", + "bindings": { + "group_col": "EI", + "entity_col": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "top_k": 13, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..e1605d60f5e5589057d5f4bc3002133fc533662a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f5-8743-7bc2-aaee-ff39c457aa60"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_clickbench_group_distinct_topk\\nSELECT \\\"EI\\\", COUNT(DISTINCT \\\"CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG\\\") AS \\\"distinct_entities\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"distinct_entities\\\" DESC\\nLIMIT 13;\",\"notes\":\"Applied the provided Top-k Groups by Distinct Entity Coverage template with group_col=\\\"EI\\\" and entity_col as the 60-mer sequence field.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13821,"cached_input_tokens":12032,"output_tokens":383,"reasoning_output_tokens":255}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..2c0d2f6349a243e347ba4b74e47c52ab46466526 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_clickbench_group_distinct_topk\nSELECT \"EI\", COUNT(DISTINCT \"CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG\") AS \"distinct_entities\"\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY \"distinct_entities\" DESC\nLIMIT 13;","notes":"Applied the provided Top-k Groups by Distinct Entity Coverage template with group_col=\"EI\" and entity_col as the 60-mer sequence field."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_d900d246d44f20fa/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..df16c06f31a8f153d2a8d531b79981bcdcd86c75 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5089, "bytes_utf8": 5089, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 452, "bytes_utf8": 452, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13824, "cached_input_tokens": 12032, "output_tokens": 388, "reasoning_output_tokens": 265}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..5ad160acee2036f200d4c939c65a160e287b5666 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_de133cf6c480447f", + "api_calls": 0, + "input_tokens": 13824, + "cached_input_tokens": 12032, + "output_tokens": 388, + "total_tokens": 14212, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10472.98, + "sql_execution_elapsed_ms_total": 1.5, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..191dea9274ff6b18da098de59fbf107f3f7218da --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:00:38.805364+00:00", + "ended_at": "2026-05-19T16:00:49.278378+00:00", + "elapsed_ms": 10472.98, + "prompt_metrics": { + "chars": 5089, + "bytes_utf8": 5089, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 803, + "bytes_utf8": 803, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 452, + "bytes_utf8": 452, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13824, + "cached_input_tokens": 12032, + "output_tokens": 388, + "reasoning_output_tokens": 265 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..b6ed5ec55cb036b6f7e723de622c4f6139bfb5b2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role focused_target_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "IE", + "positive_value": "N", + "negative_value": "IE", + "top_k": 16, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..5293b88be70d1b6abfc239c922a48aa4dc491fcf --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f7-c0a9-7db3-b660-9306a8e88753"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Uses the requested Grouped Condition Rate template with group_col and condition_col both bound to \\\"EI\\\". Because the grouping column matches the condition column, the IE group will have rate 1.0 and other label groups will have rate 0.0.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13824,"cached_input_tokens":12032,"output_tokens":388,"reasoning_output_tokens":265}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..4d2f3eedb65d941c10319b3d7ffdf23828c25987 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;","notes":"Uses the requested Grouped Condition Rate template with group_col and condition_col both bound to \"EI\". Because the grouping column matches the condition column, the IE group will have rate 1.0 and other label groups will have rate 0.0."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_de133cf6c480447f/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..90f0e45f217d6ad344e022e325deaaf81dc9701c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4762, "bytes_utf8": 4762, "lines": 130, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 231, "bytes_utf8": 231, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13738, "cached_input_tokens": 12672, "output_tokens": 257, "reasoning_output_tokens": 189}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..a0ea83c4d57ac695b832ef90b08cfe1892c7238a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_e2731001ed07661e", + "api_calls": 0, + "input_tokens": 13738, + "cached_input_tokens": 12672, + "output_tokens": 257, + "total_tokens": 13995, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7710.24, + "sql_execution_elapsed_ms_total": 2.52, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2e50fd40f14160c39f0f9ca1e35cc665cf90444a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T15:58:51.782867+00:00", + "ended_at": "2026-05-19T15:58:59.493140+00:00", + "elapsed_ms": 7710.24, + "prompt_metrics": { + "chars": 4762, + "bytes_utf8": 4762, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 585, + "bytes_utf8": 585, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 231, + "bytes_utf8": 231, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13738, + "cached_input_tokens": 12672, + "output_tokens": 257, + "reasoning_output_tokens": 189 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..a6ffc62c7d2fce97e77ef4e2997ad2e651932e0c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_group_count", + "template_name": "Grouped Count by Category", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_group_count", + "bindings": { + "group_col": "EI", + "top_k": 12, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..7674c83a604d23d9d9a72dbc1239cb21491067e4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f6-1e9a-79a2-b1dd-499bde814689"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_clickbench_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS \\\"row_count\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"row_count\\\" DESC;\",\"notes\":\"Grouped count by category for \\\"EI\\\" using the requested template.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13738,"cached_input_tokens":12672,"output_tokens":257,"reasoning_output_tokens":189}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..f90bb707a8989331ca3d4c97466c112cf02a9209 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_clickbench_group_count\nSELECT \"EI\", COUNT(*) AS \"row_count\"\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY \"row_count\" DESC;","notes":"Grouped count by category for \"EI\" using the requested template."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..63d7af93e1f29bf46194c8dd7f93347c10debcd3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI. +Result preview: [{"EI": "N", "row_count": 1655}, {"EI": "IE", "row_count": 768}, {"EI": "EI", "row_count": 766}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..44a907a7b0c58eb4302b1d37b44046abc900bbbd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/generated_sql.sql @@ -0,0 +1,17 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: subgroup_structure +-- canonical_subitem_id: subgroup_size_stability +-- intended_facet_id: subgroup_distribution_shift +-- variant_semantic_role: count_distribution +-- template_id: tpl_clickbench_group_count +-- query_record_id: v2q_c3_e2731001ed07661e +-- problem_id: v2p_c3_f2b50ae168b78bb4 +-- realization_mode: agent +-- source_kind: agent +SELECT "EI", COUNT(*) AS "row_count" +FROM "c3" +GROUP BY "EI" +ORDER BY "row_count" DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..60b34b34cdb75d4691131be78a78ae4b204554a3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 1, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_clickbench_group_count\nSELECT \"EI\", COUNT(*) AS \"row_count\"\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY \"row_count\" DESC;", "result": "{\"query\": \"-- template_id: tpl_clickbench_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS \\\"row_count\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"row_count\\\" DESC;\", \"columns\": [\"EI\", \"row_count\"], \"rows\": [{\"EI\": \"N\", \"row_count\": 1655}, {\"EI\": \"IE\", \"row_count\": 768}, {\"EI\": \"EI\", \"row_count\": 766}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 2.52}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..8668ad1d646ca522943593ab4bc9aa305a6c3f58 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/run_manifest.json @@ -0,0 +1,87 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T15:58:51.781901+00:00", + "ended_at": "2026-05-19T15:58:59.499788+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_e2731001ed07661e", + "problem_id": "v2p_c3_f2b50ae168b78bb4", + "dataset_id": "c3", + "template_id": "tpl_clickbench_group_count", + "template_name": "Grouped Count by Category", + "family_id": "subgroup_structure", + "canonical_subitem_id": "subgroup_size_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "count_distribution", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Grouped Count by Category to probe subgroup_size_stability with semantic role count_distribution. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "top_k": 12, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS row_count\nFROM {table}\nGROUP BY {group_col}\nORDER BY row_count DESC;", + "notes": [ + "default_facets=subgroup_distribution_shift", + "template_selection_mode=rule", + "problem_index_within_template=1", + "sql_variant_index=1/1", + "binding_index=12" + ], + "template_selection_mode": "rule", + "selected_template_rank": 2, + "problem_index_within_template": 1, + "sql_variant_index": 1, + "sql_variant_total": 1 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_e2731001ed07661e.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_e2731001ed07661e", + "api_calls": 0, + "input_tokens": 13738, + "cached_input_tokens": 12672, + "output_tokens": 257, + "total_tokens": 13995, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7710.24, + "sql_execution_elapsed_ms_total": 2.52, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..8b9b2d07a0756bc1ea1183d4286e2acc92fb8fbd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/trace.jsonl @@ -0,0 +1 @@ +{"timestamp": "2026-05-19T15:58:59.494623+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 7710.24, "started_at": "2026-05-19T15:58:51.782867+00:00", "ended_at": "2026-05-19T15:58:59.493140+00:00", "prompt_metrics": {"chars": 4762, "bytes_utf8": 4762, "lines": 130, "estimated_tokens": null}, "response_metrics": {"chars": 231, "bytes_utf8": 231, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13738, "cached_input_tokens": 12672, "output_tokens": 257, "reasoning_output_tokens": 189}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_clickbench_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS \\\"row_count\\\"\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY \\\"row_count\\\" DESC;\",\"notes\":\"Grouped count by category for \\\"EI\\\" using the requested template.\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..61fab98399454533365c3bd1b24bbd732420f1c1 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/usage_summary.json @@ -0,0 +1,20 @@ +{ + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_e2731001ed07661e", + "api_calls": 0, + "input_tokens": 13738, + "cached_input_tokens": 12672, + "output_tokens": 257, + "total_tokens": 13995, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 7710.24, + "sql_execution_elapsed_ms_total": 2.52, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e2731001ed07661e/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2145a6c782920e49670b31835a376b9e39884f1b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:06:31.395055+00:00", + "ended_at": "2026-05-19T16:06:34.562556+00:00", + "elapsed_ms": 3167.48, + "returncode": 1, + "prompt_metrics": { + "chars": 5175, + "bytes_utf8": 5175, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..26a5f5d999580e77b8ac234705a2d013a7561419 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:06:35.564901+00:00", + "ended_at": "2026-05-19T16:06:38.803459+00:00", + "elapsed_ms": 3238.5, + "returncode": 1, + "prompt_metrics": { + "chars": 5175, + "bytes_utf8": 5175, + "lines": 133, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..17afe8d9d6ff0d3657c44d8819724f4d606589bc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "N", + "top_k": 13, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..17afe8d9d6ff0d3657c44d8819724f4d606589bc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,133 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_target_rate_extremes_v2", + "template_name": "Tail Target-Rate Extremes", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "target_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Tail Target-Rate Extremes to probe tail_concentration_consistency with semantic role ranked_signal_view. Focus on group_col=EI, target_col=EI.", + "planned_template_id": "tpl_tail_target_rate_extremes_v2", + "bindings": { + "group_col": "EI", + "target_col": "EI", + "target_value": "N", + "top_k": 13, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support,\n AVG(CASE WHEN {target_col} = {target_value} THEN 1 ELSE 0 END) AS focus_rate\nFROM {table}\nGROUP BY {group_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY focus_rate DESC, support ASC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..3372e6c0f08776474105694674b0bf52cb55ca3d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-21ea-7372-bd93-cfa978b9824d"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..33e231956e9b71fd7a11792dfbd18e914514368e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-21ea-7372-bd93-cfa978b9824d"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..24e19a29b8a59bc8b9463ca480e91bdc42d064d8 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-3252-7f11-8b0e-d855ceed574b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..a3c00637d9c9dde33abd5429d8569f1fa09cd132 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fd-3252-7f11-8b0e-d855ceed574b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_e7cff3c936d9113b/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..051e30131e2489b0a595739dbd8e6777d0632d01 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:41.112605+00:00", + "ended_at": "2026-05-19T16:09:44.269712+00:00", + "elapsed_ms": 3157.09, + "returncode": 1, + "prompt_metrics": { + "chars": 5031, + "bytes_utf8": 5031, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..fdb40c50305feecdaa47cb9bd90cabd44f69c0d4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:45.271137+00:00", + "ended_at": "2026-05-19T16:09:48.343966+00:00", + "elapsed_ms": 3072.8, + "returncode": 1, + "prompt_metrics": { + "chars": 5031, + "bytes_utf8": 5031, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..44c8ea3c94d9bfdf02cf258f27a3b49521b607e2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 14, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..44c8ea3c94d9bfdf02cf258f27a3b49521b607e2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 14, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..911edce6e193307fbc83db65502b9d4f013652ba --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-06f2-71b0-adb2-72d3f368b2f4"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..14d5db3f2ae1028208d2d2b2478aaa8d7b341e16 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-06f2-71b0-adb2-72d3f368b2f4"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..f8a9faa6fde458560169d940131c1a0fbf51f435 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-1743-76f2-ad27-21a8771d53ba"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..95b6ba9096f7e8cf1c10a91c10a927c1ee964282 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4100-1743-76f2-ad27-21a8771d53ba"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..ac77e19c05529d492c59965059a2dc89ae8e17da --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/run_manifest.json @@ -0,0 +1,71 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:09:41.111724+00:00", + "ended_at": "2026-05-19T16:09:48.344814+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_ee9eeae00df12038", + "problem_id": "v2p_c3_a746f83374a87672", + "dataset_id": "c3", + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "family_id": "subgroup_structure", + "canonical_subitem_id": "subgroup_size_stability", + "intended_facet_id": "subgroup_distribution_shift", + "variant_semantic_role": "filtered_stable_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "top_k": 14, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "notes": [ + "default_facets=subgroup_distribution_shift", + "template_selection_mode=rule", + "problem_index_within_template=8", + "sql_variant_index=1/2", + "binding_index=79" + ], + "template_selection_mode": "rule", + "selected_template_rank": 7, + "problem_index_within_template": 8, + "sql_variant_index": 1, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..847ed439c1dc8f6d8c0b2531e252e6bd4d008d43 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_ee9eeae00df12038/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:09:44.270368+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3157.09, "started_at": "2026-05-19T16:09:41.112605+00:00", "ended_at": "2026-05-19T16:09:44.269712+00:00", "prompt_metrics": {"chars": 5031, "bytes_utf8": 5031, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4100-06f2-71b0-adb2-72d3f368b2f4\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:09:48.344723+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3072.8, "started_at": "2026-05-19T16:09:45.271137+00:00", "ended_at": "2026-05-19T16:09:48.343966+00:00", "prompt_metrics": {"chars": 5031, "bytes_utf8": 5031, "lines": 134, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4100-1743-76f2-ad27-21a8771d53ba\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..8ab135fc5f9dac3aef3e6621f4ea923c25bbe70e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 4843, "bytes_utf8": 4843, "lines": 130, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 342, "bytes_utf8": 342, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13774, "cached_input_tokens": 12032, "output_tokens": 451, "reasoning_output_tokens": 357}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..c5584ae129e85e070bff187e89ed3bffad8916af --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_f44fcc199e275e51", + "api_calls": 0, + "input_tokens": 13774, + "cached_input_tokens": 12032, + "output_tokens": 451, + "total_tokens": 14225, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 10447.17, + "sql_execution_elapsed_ms_total": 1.21, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..000be0069f7331d9afa8a2c8c2dfa58127fa2bde --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:03:34.089312+00:00", + "ended_at": "2026-05-19T16:03:44.536509+00:00", + "elapsed_ms": 10447.17, + "prompt_metrics": { + "chars": 4843, + "bytes_utf8": 4843, + "lines": 130, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 695, + "bytes_utf8": 695, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 342, + "bytes_utf8": 342, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13774, + "cached_input_tokens": 12032, + "output_tokens": 451, + "reasoning_output_tokens": 357 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..36340c15141c0b7781e5243f852d329dff1bf191 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,130 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "primary_family": "tail_rarity_structure", + "portability": "yes", + "sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "required_roles": [ + "group_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role count_distribution. Focus on group_col=EI.", + "planned_template_id": "tpl_tail_low_support_group_count_v2", + "bindings": { + "group_col": "EI", + "top_k": 18, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..09d938c43f8a6fc94d8a4b102de74a2d0cbd134a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40fa-6d45-7653-b016-c3958a364fa8"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_tail_low_support_group_count_v2\\nSELECT\\n \\\"EI\\\",\\n COUNT(*) AS support\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY support ASC, \\\"EI\\\"\\nLIMIT 18;\",\"notes\":\"Uses the requested Low-Support Group Count template with group_col bound to \\\"EI\\\" to count class-label support and list the lowest-support labels first.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13774,"cached_input_tokens":12032,"output_tokens":451,"reasoning_output_tokens":357}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..2eadd8ebad9b5ab0feac1b87dddeabae21360fb6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_tail_low_support_group_count_v2\nSELECT\n \"EI\",\n COUNT(*) AS support\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY support ASC, \"EI\"\nLIMIT 18;","notes":"Uses the requested Low-Support Group Count template with group_col bound to \"EI\" to count class-label support and list the lowest-support labels first."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f44fcc199e275e51/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..b26dd8abea64d88afcaf488eea30d501668e4ded --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5089, "bytes_utf8": 5089, "lines": 135, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 450, "bytes_utf8": 450, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13824, "cached_input_tokens": 12032, "output_tokens": 296, "reasoning_output_tokens": 175}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..ee7f9fcef2d041f4f3a523c180c1aeb2802b4ace --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_f53296250b250c07", + "api_calls": 0, + "input_tokens": 13824, + "cached_input_tokens": 12032, + "output_tokens": 296, + "total_tokens": 14120, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 8392.28, + "sql_execution_elapsed_ms_total": 2.71, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..4d2d9218506db42bed392b02cf8569219ef7c754 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:00:03.212103+00:00", + "ended_at": "2026-05-19T16:00:11.604429+00:00", + "elapsed_ms": 8392.28, + "prompt_metrics": { + "chars": 5089, + "bytes_utf8": 5089, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 805, + "bytes_utf8": 805, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 450, + "bytes_utf8": 450, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13824, + "cached_input_tokens": 12032, + "output_tokens": 296, + "reasoning_output_tokens": 175 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..304119f56ee0bb01f79ab306ad3d58858151f8ae --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role focused_target_view. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "IE", + "positive_value": "N", + "negative_value": "IE", + "top_k": 19, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..b2d0a344204fd3519221738c6b106230f9e4c3e0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f7-3597-70d2-a005-fd7319b9f0d6"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Applied the provided Grouped Condition Rate template with group_col=\\\"EI\\\" and condition_col=\\\"EI\\\". Because the grouping and condition columns are the same, each label group yields a deterministic rate: 1 for IE and 0 for other labels.\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13824,"cached_input_tokens":12032,"output_tokens":296,"reasoning_output_tokens":175}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..133439924a0e046127c822715924c16793807621 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;","notes":"Applied the provided Grouped Condition Rate template with group_col=\"EI\" and condition_col=\"EI\". Because the grouping and condition columns are the same, each label group yields a deterministic rate: 1 for IE and 0 for other labels."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..e944e6382a4628918704d9af1171d5773f92c7b6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/final_answer.txt @@ -0,0 +1,2 @@ +SQL executed successfully for: Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role focused_target_view. Focus on group_col=EI, condition_col=EI. +Result preview: [{"EI": "IE", "condition_rate": 1.0}, {"EI": "N", "condition_rate": 0.0}, {"EI": "EI", "condition_rate": 0.0}] \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..61d0e3d1a2be91b42a3e4b82d2af207dd218ccdd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/generated_sql.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: c3 +-- family_id: conditional_dependency_structure +-- canonical_subitem_id: dependency_strength_similarity +-- intended_facet_id: pairwise_conditional_dependency +-- variant_semantic_role: focused_target_view +-- template_id: tpl_m4_group_condition_rate +-- query_record_id: v2q_c3_f53296250b250c07 +-- problem_id: v2p_c3_c9ec738d48e38baf +-- realization_mode: agent +-- source_kind: agent +SELECT "EI", + AVG(CASE WHEN "EI" = 'IE' THEN 1 ELSE 0 END) AS condition_rate +FROM "c3" +GROUP BY "EI" +ORDER BY condition_rate DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..a6fcd14af5a9b4cde7945207fa543075fdcccafd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/query_results.jsonl @@ -0,0 +1 @@ +{"step_index": 1, "message_index": 0, "node_name": "v2-cli:codex", "tool_name": "sqlite_query", "query": "-- template_id: tpl_m4_group_condition_rate\nSELECT \"EI\",\n AVG(CASE WHEN \"EI\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\nFROM \"c3\"\nGROUP BY \"EI\"\nORDER BY condition_rate DESC;", "result": "{\"query\": \"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\", \"columns\": [\"EI\", \"condition_rate\"], \"rows\": [{\"EI\": \"IE\", \"condition_rate\": 1.0}, {\"EI\": \"N\", \"condition_rate\": 0.0}, {\"EI\": \"EI\", \"condition_rate\": 0.0}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 2.71}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..d43139e121d57ea1ff3bdc84ac91f42ce27f0f87 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/run_manifest.json @@ -0,0 +1,92 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "c3", + "started_at": "2026-05-19T16:00:03.210064+00:00", + "ended_at": "2026-05-19T16:00:11.611485+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_c3_f53296250b250c07", + "problem_id": "v2p_c3_c9ec738d48e38baf", + "dataset_id": "c3", + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "family_id": "conditional_dependency_structure", + "canonical_subitem_id": "dependency_strength_similarity", + "intended_facet_id": "pairwise_conditional_dependency", + "variant_semantic_role": "focused_target_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role focused_target_view. Focus on group_col=EI, condition_col=EI.", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "IE", + "positive_value": "N", + "negative_value": "IE", + "top_k": 19, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "condition_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "notes": [ + "default_facets=pairwise_conditional_dependency", + "template_selection_mode=rule", + "problem_index_within_template=1", + "sql_variant_index=2/2", + "binding_index=24" + ], + "template_selection_mode": "rule", + "selected_template_rank": 3, + "problem_index_within_template": 1, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/sql/v2q_c3_f53296250b250c07.sql", + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_f53296250b250c07", + "api_calls": 0, + "input_tokens": 13824, + "cached_input_tokens": 12032, + "output_tokens": 296, + "total_tokens": 14120, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 8392.28, + "sql_execution_elapsed_ms_total": 2.71, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..24bb8af2ad9bc8b8605394657f35188b787100fd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/trace.jsonl @@ -0,0 +1 @@ +{"timestamp": "2026-05-19T16:00:11.605940+00:00", "event_type": "ai_cli_sql_generation", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 0, "elapsed_ms": 8392.28, "started_at": "2026-05-19T16:00:03.212103+00:00", "ended_at": "2026-05-19T16:00:11.604429+00:00", "prompt_metrics": {"chars": 5089, "bytes_utf8": 5089, "lines": 135, "estimated_tokens": null}, "response_metrics": {"chars": 450, "bytes_utf8": 450, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13824, "cached_input_tokens": 12032, "output_tokens": 296, "reasoning_output_tokens": 175}, "stderr_preview": "", "stdout_preview": "{\"sql\":\"-- template_id: tpl_m4_group_condition_rate\\nSELECT \\\"EI\\\",\\n AVG(CASE WHEN \\\"EI\\\" = 'IE' THEN 1 ELSE 0 END) AS condition_rate\\nFROM \\\"c3\\\"\\nGROUP BY \\\"EI\\\"\\nORDER BY condition_rate DESC;\",\"notes\":\"Applied the provided Grouped Condition Rate template with group_col=\\\"EI\\\" and condition_col=\\\"EI\\\". Because the grouping and condition columns are the same, each label group yields a deterministic rate: 1 for IE and 0 for other labels.\"}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..6a3d4ef1e915cd9045dbaa8a364236de53036a7b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/usage_summary.json @@ -0,0 +1,20 @@ +{ + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_f53296250b250c07", + "api_calls": 0, + "input_tokens": 13824, + "cached_input_tokens": 12032, + "output_tokens": 296, + "total_tokens": 14120, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 8392.28, + "sql_execution_elapsed_ms_total": 2.71, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f53296250b250c07/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/conversation.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/conversation.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..e47830d301cd7d1fd727d059bb528baaf6664b23 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/conversation.jsonl @@ -0,0 +1,2 @@ +{"attempt": 1, "phase": "sql_generation", "role": "user", "content_path": "cli/sql_prompt_attempt_1.txt", "metrics": {"chars": 5031, "bytes_utf8": 5031, "lines": 134, "estimated_tokens": null}} +{"attempt": 1, "phase": "sql_generation", "role": "assistant", "content_path": "cli/sql_response_attempt_1.txt", "raw_content_path": "cli/sql_response_attempt_1.raw.txt", "stderr_path": "cli/sql_stderr_attempt_1.txt", "metrics": {"chars": 331, "bytes_utf8": 331, "lines": 1, "estimated_tokens": null}, "usage": {"input_tokens": 13812, "cached_input_tokens": 12032, "output_tokens": 229, "reasoning_output_tokens": 130}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/session_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/session_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..dea831cb1b56eac2fa8e21c40279d61ee027bdb5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/session_summary.json @@ -0,0 +1,25 @@ +{ + "engine": "v2-cli:codex", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "ai_cli_calls": 1, + "usage_summary": { + "dataset_id": "c3", + "model": "v2-cli:codex", + "run_id": "v2q_c3_f9ff7a8b5e107a9c", + "api_calls": 0, + "input_tokens": 13812, + "cached_input_tokens": 12032, + "output_tokens": 229, + "total_tokens": 14041, + "cost_usd": 0.0, + "ai_cli_calls": 1, + "estimated_input_tokens": 0, + "estimated_output_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "ai_cli_json_usage", + "cli_elapsed_ms_total": 6915.41, + "sql_execution_elapsed_ms_total": 0.69, + "conversation_log_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/conversation.jsonl", + "note": "Executed through a local AI CLI with structured usage metadata." + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..d9ac6869a5fff11f181c4922955c0a16715a5b18 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_attempt_1.metadata.json @@ -0,0 +1,45 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:09:12.775854+00:00", + "ended_at": "2026-05-19T16:09:19.691286+00:00", + "elapsed_ms": 6915.41, + "prompt_metrics": { + "chars": 5031, + "bytes_utf8": 5031, + "lines": 134, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 691, + "bytes_utf8": 691, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 331, + "bytes_utf8": 331, + "lines": 1, + "estimated_tokens": null + }, + "usage": { + "input_tokens": 13812, + "cached_input_tokens": 12032, + "output_tokens": 229, + "reasoning_output_tokens": 130 + } + }, + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..643a9ec8aeabad5a307978ea8496be76a1ac6f3e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,134 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_topk_group_count", + "template_name": "Filtered Top-k Group Count", + "primary_family": "subgroup_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Group Count to probe subgroup_size_stability with semantic role filtered_stable_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_topk_group_count", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "EI", + "top_k": 12, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(*) AS support\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY support DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..55128ef487dd718fa311c013305a8eb5b6fe1958 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40ff-983c-7610-9012-bec533507776"} +{"type":"turn.started"} +{"type":"item.completed","item":{"id":"item_0","type":"agent_message","text":"{\"sql\":\"-- template_id: tpl_clickbench_filtered_topk_group_count\\nSELECT \\\"EI\\\", COUNT(*) AS support\\nFROM \\\"c3\\\"\\nWHERE \\\"EI\\\" = 'EI'\\nGROUP BY \\\"EI\\\"\\nORDER BY support DESC\\nLIMIT 12;\",\"notes\":\"Applied the planned Filtered Top-k Group Count template with group_col=\\\"EI\\\" and predicate \\\"EI\\\" = 'EI' on the single table \\\"c3\\\".\"}"}} +{"type":"turn.completed","usage":{"input_tokens":13812,"cached_input_tokens":12032,"output_tokens":229,"reasoning_output_tokens":130}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..c9437c25fb1ab78d08251fe54f189d0886e58673 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_response_attempt_1.txt @@ -0,0 +1 @@ +{"sql":"-- template_id: tpl_clickbench_filtered_topk_group_count\nSELECT \"EI\", COUNT(*) AS support\nFROM \"c3\"\nWHERE \"EI\" = 'EI'\nGROUP BY \"EI\"\nORDER BY support DESC\nLIMIT 12;","notes":"Applied the planned Filtered Top-k Group Count template with group_col=\"EI\" and predicate \"EI\" = 'EI' on the single table \"c3\"."} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_f9ff7a8b5e107a9c/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..59437a1897b6df6dc394d7b4d0c4808bb32aab83 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:01:51.707720+00:00", + "ended_at": "2026-05-19T16:01:54.879629+00:00", + "elapsed_ms": 3171.88, + "returncode": 1, + "prompt_metrics": { + "chars": 5091, + "bytes_utf8": 5091, + "lines": 135, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..8646f1e2cfa7adc14e959bd4c49eb6fb9cfd366a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 10, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..8646f1e2cfa7adc14e959bd4c49eb6fb9cfd366a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,135 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_m4_group_condition_rate", + "template_name": "Grouped Condition Rate", + "primary_family": "conditional_dependency_structure", + "portability": "yes", + "sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;", + "required_roles": [ + "group_col", + "condition_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Grouped Condition Rate to probe dependency_strength_similarity with semantic role within_group_proportion. Focus on group_col=EI, condition_col=EI.", + "planned_template_id": "tpl_m4_group_condition_rate", + "bindings": { + "group_col": "EI", + "condition_col": "EI", + "condition_value": "N", + "positive_value": "N", + "negative_value": "IE", + "top_k": 10, + "top_n": 5, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col},\n AVG(CASE WHEN {condition_col} = {condition_value} THEN 1 ELSE 0 END) AS condition_rate\nFROM {table}\nGROUP BY {group_col}\nORDER BY condition_rate DESC;" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..2748c3d97a28755dfe98367b4c4b00efba828de3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-dd67-79d2-b7ea-690ec6e06e81"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..5d7d02f525e42ef4042b0fb0442517aad46e4b4d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-dd67-79d2-b7ea-690ec6e06e81"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..3f146ab568f7319ef1697e915da48b3c50c895e1 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e40f8-edc7-7b52-b4df-44695d0a8668"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fcdd22fa09d84f28/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_attempt_1.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_attempt_1.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..7ee6d328df5ddbfe21f408423d074ec5ce453449 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_attempt_1.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 1, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:11:09.382631+00:00", + "ended_at": "2026-05-19T16:11:12.936391+00:00", + "elapsed_ms": 3553.73, + "returncode": 1, + "prompt_metrics": { + "chars": 5182, + "bytes_utf8": 5182, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_1.txt", + "response_path": "cli/sql_response_attempt_1.txt", + "raw_response_path": "cli/sql_response_attempt_1.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_1.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_attempt_2.metadata.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_attempt_2.metadata.json new file mode 100644 index 0000000000000000000000000000000000000000..2f33adef72631e9235f378cc44d21d0549c9abbc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_attempt_2.metadata.json @@ -0,0 +1,43 @@ +{ + "attempt": 2, + "phase": "sql_generation", + "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", + "started_at": "2026-05-19T16:11:13.937971+00:00", + "ended_at": "2026-05-19T16:11:19.216257+00:00", + "elapsed_ms": 5278.2, + "returncode": 1, + "prompt_metrics": { + "chars": 5182, + "bytes_utf8": 5182, + "lines": 136, + "estimated_tokens": null + }, + "stdout_metrics": { + "chars": 281, + "bytes_utf8": 281, + "lines": 4, + "estimated_tokens": null + }, + "stderr_metrics": { + "chars": 0, + "bytes_utf8": 0, + "lines": 0, + "estimated_tokens": null + }, + "parsed_output": { + "format": "jsonl_events", + "text_metrics": { + "chars": 280, + "bytes_utf8": 280, + "lines": 4, + "estimated_tokens": null + }, + "usage": {} + }, + "status": "failed", + "error": "AI CLI command failed with exit code 1: ", + "prompt_path": "cli/sql_prompt_attempt_2.txt", + "response_path": "cli/sql_response_attempt_2.txt", + "raw_response_path": "cli/sql_response_attempt_2.raw.txt", + "stderr_path": "cli/sql_stderr_attempt_2.txt" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_prompt_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_prompt_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..ec30537aa24fd376239161e8d3cdaf48f2aa023b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_prompt_attempt_1.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "entity_col": "ATRINS-DONOR-521", + "top_k": 15, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_prompt_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_prompt_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..ec30537aa24fd376239161e8d3cdaf48f2aa023b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_prompt_attempt_2.txt @@ -0,0 +1,136 @@ +You are generating one SQLite SELECT query for a single-table SQL QA task. +Return strict JSON only, with this schema: {"sql": "...", "notes": "..."}. +Rules: +- Use only the provided table and columns. +- Do not write INSERT, UPDATE, DELETE, DROP, ALTER, CREATE, PRAGMA, ATTACH, DETACH, or VACUUM. +- Prefer the planned template and bound roles when provided. +- Add a leading SQL comment exactly like: -- template_id: . +- Generate SQLite-compatible SQL. SQLite does not support PERCENTILE_CONT or STDDEV. +- Quote identifiers with double quotes. +- Return no markdown and no extra prose. + +Dataset context: +Dataset context for SQL QA: +- dataset_id: c3 +- dataset_name: Splice junction Gene Sequences +- table_name: c3 +- table_layout: single-table dataset (do not assume joins). +- row_semantics: One row is one splice-junction sequence example with a boundary label. +- task_type: classification +- target_column: EI +- main_row_count: 3189 +- important_fields: +- EI: role=target, type=categorical_target. tags=['target_candidate'] desc=Splice boundary label: EI, IE, or N. +- ATRINS-DONOR-521: role=identifier, type=identifier_string. tags=['identifier', 'probe_exclude', 'high_cardinality_candidate'] desc=Record identifier token (id-like). +- CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG: role=feature, type=dna_sequence_fixed_length_60. tags=['condition_candidate', 'text_exclude', 'high_cardinality_candidate', 'rare_pattern_candidate'] desc=Packed 60-mer DNA sequence context string. +- useful_field_combinations: [['EI', 'derived_sequence_motif_features']] +- fields_requiring_caution: ['ATRINS-DONOR-521', 'CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG'] +- source_url: https://archive.ics.uci.edu/dataset/69/molecular+biology+splice+junction+gene+sequences + +SQLite schema snapshot: +{ + "table_name": "c3", + "quoted_table_name": "\"c3\"", + "row_count": 3189, + "columns": [ + { + "name": "EI", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "ATRINS-DONOR-521", + "type": "TEXT", + "notnull": false, + "pk": false + }, + { + "name": "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG", + "type": "TEXT", + "notnull": false, + "pk": false + } + ], + "sample_rows": [ + { + "EI": "EI", + "ATRINS-DONOR-521": "ATRINS-DONOR-905", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "AGACCCGCCGGGAGGCGGAGGACCTGCAGGGTGAGCCCCACCGCCCCTCCGTGCCCCCGC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-30", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GAGGTGAAGGACGTCCTTCCCCAGGAGCCGGTGAGAAGCGCAGTCGGGGGCACGGGGATG" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-867", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GGGCTGCGTTGCTGGTCACATTCCTGGCAGGTATGGGGCGGGGCTTGCTCGGTTTTCCCC" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "BABAPOE-DONOR-2817", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "GCTCAGCCCCCAGGTCACCCAGGAACTGACGTGAGTGTCCCCATCCCGGCCCTTGACCCT" + }, + { + "EI": "EI", + "ATRINS-DONOR-521": "CHPIGECA-DONOR-378", + "CCAGCTGCATCACAGGAGGCCAGCGAGCAGGTCTGTTCCAAGGGCCTTCGAGCCAGTCTG": "CAGACTGGGTGGACAACAAAACCTTCAGCGGTAAGAGAGGGCCAAGCTCAGAGACCACAG" + } + ] +} + +Shortlisted templates: +[ + { + "template_id": "tpl_clickbench_filtered_distinct_topk", + "template_name": "Filtered Top-k Distinct Coverage", + "primary_family": "subgroup_structure", + "portability": "partial", + "sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};", + "required_roles": [ + "group_col", + "entity_col", + "predicate_col" + ] + } +] + +Problem instance: +{ + "dataset_id": "c3", + "question": "Use template Filtered Top-k Distinct Coverage to probe internal_profile_stability with semantic role ranked_signal_view. Focus on group_col=EI.", + "planned_template_id": "tpl_clickbench_filtered_distinct_topk", + "bindings": { + "group_col": "EI", + "predicate_col": "EI", + "predicate_op": "=", + "predicate_value": "IE", + "entity_col": "ATRINS-DONOR-521", + "top_k": 15, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "can_vary": [], + "must_fix": [], + "runtime_sql_skeleton": "SELECT {group_col}, COUNT(DISTINCT {entity_col}) AS distinct_entities\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}\nORDER BY distinct_entities DESC\nLIMIT {top_k};" +} + +Repair context: +{} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_1.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_1.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..22211bc562bdc795d3d5505736238ab6e029ec76 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_1.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-5fd4-7812-b3a0-181fb785c8e4"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..be5a1cf824ad26e092ea6be4a0cdb2b61f31e68f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_1.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-5fd4-7812-b3a0-181fb785c8e4"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_2.raw.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_2.raw.txt new file mode 100644 index 0000000000000000000000000000000000000000..7bbe8d0a9d8e9ef588523fb236ce3b531c855509 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_2.raw.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-71b0-7d73-a9c2-d49c573fd43b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..d8644f006bd12517d2e9187fc5e515908be93b0c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_response_attempt_2.txt @@ -0,0 +1,4 @@ +{"type":"thread.started","thread_id":"019e4101-71b0-7d73-a9c2-d49c573fd43b"} +{"type":"turn.started"} +{"type":"error","message":"Quota exceeded. Check your plan and billing details."} +{"type":"turn.failed","error":{"message":"Quota exceeded. Check your plan and billing details."}} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_stderr_attempt_1.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_stderr_attempt_1.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_stderr_attempt_2.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/c3/artifacts/v2q_c3_fd9b70f91051ffdf/cli/sql_stderr_attempt_2.txt new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_050f6eedb3a2a66e/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_050f6eedb3a2a66e/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..7107108f46bb67185ad2c04465ad30801e7b35e6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_050f6eedb3a2a66e/run_manifest.json @@ -0,0 +1,73 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "n4", + "started_at": "2026-05-19T16:15:25.698689+00:00", + "ended_at": "2026-05-19T16:15:36.906276+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_n4_050f6eedb3a2a66e", + "problem_id": "v2p_n4_0d9162b08ed298e3", + "dataset_id": "n4", + "template_id": "tpl_c2_filtered_group_count_2d", + "template_name": "Filtered Two-Dimensional Group Count", + "family_id": "conditional_dependency_structure", + "canonical_subitem_id": "slice_level_consistency", + "intended_facet_id": "conditional_interaction_hotspots", + "variant_semantic_role": "count_distribution", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Filtered Two-Dimensional Group Count to probe slice_level_consistency with semantic role count_distribution. Focus on group_col=feature_76, group_col_2=feature_117.", + "bindings": { + "group_col": "feature_76", + "group_col_2": "feature_117", + "predicate_col": "feature_53", + "predicate_op": ">=", + "predicate_value": 0.72, + "top_k": 12, + "top_n": 3, + "num_tiles": 10, + "percentile_value": 0.95, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.7, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "group_col_2", + "predicate_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT {group_col}, {group_col_2}, COUNT(*) AS row_count\nFROM {table}\nWHERE {predicate_col} {predicate_op} {predicate_value}\nGROUP BY {group_col}, {group_col_2}\nORDER BY row_count DESC;", + "notes": [ + "default_facets=conditional_interaction_hotspots", + "template_selection_mode=rule", + "problem_index_within_template=5", + "sql_variant_index=1/1", + "binding_index=52" + ], + "template_selection_mode": "rule", + "selected_template_rank": 5, + "problem_index_within_template": 5, + "sql_variant_index": 1, + "sql_variant_total": 1 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_050f6eedb3a2a66e/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_050f6eedb3a2a66e/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..6170b32fb9b886c7d89f4dc3495531086573720f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_050f6eedb3a2a66e/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:15:32.227986+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 6524.73, "started_at": "2026-05-19T16:15:25.702380+00:00", "ended_at": "2026-05-19T16:15:32.227141+00:00", "prompt_metrics": {"chars": 50948, "bytes_utf8": 50948, "lines": 1636, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4105-4918-71f2-860d-d0a6a0f47fe7\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:15:36.906138+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3673.05, "started_at": "2026-05-19T16:15:33.231815+00:00", "ended_at": "2026-05-19T16:15:36.904912+00:00", "prompt_metrics": {"chars": 50948, "bytes_utf8": 50948, "lines": 1636, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4105-6666-7351-af15-d4f138f01429\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..96cae560c874b14a5657406bed3aa358a6c8c76a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/final_answer.txt @@ -0,0 +1 @@ +{"row_count": null, "preview_rows": [{"target": "0.03", "total_rows": 104, "missing_rows": 0, "missing_rate": 0.0}, {"target": "0.04", "total_rows": 92, "missing_rows": 0, "missing_rate": 0.0}, {"target": "0.06", "total_rows": 86, "missing_rows": 0, "missing_rate": 0.0}, {"target": "0.05", "total_rows": 80, "missing_rows": 0, "missing_rate": 0.0}, {"target": "0.02", "total_rows": 74, "missing_rows": 0, "missing_rate": 0.0}]} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..f00791ca14743c30c56771f2f63db28f673d4531 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/generated_sql.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_23b41a2d73b152df +-- problem_id: v2p_n4_2667e9a259d9a859 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "target", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_103" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_103" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "target" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..b777bc519654406b3c57deae2a36d193b40db4f7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/query_results.jsonl @@ -0,0 +1 @@ +{"node_name": "v2_template", "tool_name": "sqlite_query", "query": "-- sql_source_version: v2\n-- sql_source_label: v2_current\n-- sql_source_run_id: v2_cli_20260502_081223_e\n-- sql_source_dataset_id: n4\n-- family_id: missingness_structure\n-- canonical_subitem_id: co_missingness_pattern_consistency\n-- intended_facet_id: missing_target_interaction\n-- variant_semantic_role: missing_target_interaction\n-- template_id: tpl_missing_target_interaction\n-- query_record_id: v2q_n4_23b41a2d73b152df\n-- problem_id: v2p_n4_2667e9a259d9a859\n-- realization_mode: deterministic\n-- source_kind: deterministic\nSELECT\n \"target\",\n COUNT(*) AS total_rows,\n SUM(CASE WHEN \"feature_103\" IS NULL THEN 1 ELSE 0 END) AS missing_rows,\n AVG(CASE WHEN \"feature_103\" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate\nFROM \"n4\"\nGROUP BY \"target\"\nORDER BY missing_rate DESC, total_rows DESC;", "result": "{\"query\": \"-- sql_source_version: v2\\n-- sql_source_label: v2_current\\n-- sql_source_run_id: v2_cli_20260502_081223_e\\n-- sql_source_dataset_id: n4\\n-- family_id: missingness_structure\\n-- canonical_subitem_id: co_missingness_pattern_consistency\\n-- intended_facet_id: missing_target_interaction\\n-- variant_semantic_role: missing_target_interaction\\n-- template_id: tpl_missing_target_interaction\\n-- query_record_id: v2q_n4_23b41a2d73b152df\\n-- problem_id: v2p_n4_2667e9a259d9a859\\n-- realization_mode: deterministic\\n-- source_kind: deterministic\\nSELECT\\n \\\"target\\\",\\n COUNT(*) AS total_rows,\\n SUM(CASE WHEN \\\"feature_103\\\" IS NULL THEN 1 ELSE 0 END) AS missing_rows,\\n AVG(CASE WHEN \\\"feature_103\\\" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate\\nFROM \\\"n4\\\"\\nGROUP BY \\\"target\\\"\\nORDER BY missing_rate DESC, total_rows DESC;\", \"columns\": [\"target\", \"total_rows\", \"missing_rows\", \"missing_rate\"], \"rows\": [{\"target\": \"0.03\", \"total_rows\": 104, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.04\", \"total_rows\": 92, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.06\", \"total_rows\": 86, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.05\", \"total_rows\": 80, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.02\", \"total_rows\": 74, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.09\", \"total_rows\": 69, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.1\", \"total_rows\": 64, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.07\", \"total_rows\": 63, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.08\", \"total_rows\": 63, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.12\", \"total_rows\": 63, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.11\", \"total_rows\": 56, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.15\", \"total_rows\": 49, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.14\", \"total_rows\": 48, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"1\", \"total_rows\": 44, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.13\", \"total_rows\": 42, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.16\", \"total_rows\": 41, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.2\", \"total_rows\": 39, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.01\", \"total_rows\": 38, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.22\", \"total_rows\": 38, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.18\", \"total_rows\": 37, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.19\", \"total_rows\": 36, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.17\", \"total_rows\": 34, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.21\", \"total_rows\": 33, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.24\", \"total_rows\": 29, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.23\", \"total_rows\": 27, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.25\", \"total_rows\": 26, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.28\", \"total_rows\": 25, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.26\", \"total_rows\": 24, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.29\", \"total_rows\": 23, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.36\", \"total_rows\": 22, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.27\", \"total_rows\": 21, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.34\", \"total_rows\": 21, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.3\", \"total_rows\": 20, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.31\", \"total_rows\": 18, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.33\", \"total_rows\": 18, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.32\", \"total_rows\": 17, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.37\", \"total_rows\": 17, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.53\", \"total_rows\": 17, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.41\", \"total_rows\": 16, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.45\", \"total_rows\": 16, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.39\", \"total_rows\": 15, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.35\", \"total_rows\": 14, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.54\", \"total_rows\": 13, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.38\", \"total_rows\": 12, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.4\", \"total_rows\": 12, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.5\", \"total_rows\": 12, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.59\", \"total_rows\": 12, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.48\", \"total_rows\": 11, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0.51\", \"total_rows\": 11, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"target\": \"0\", \"total_rows\": 10, \"missing_rows\": 0, \"missing_rate\": 0.0}], \"row_count_returned\": 50, \"row_limit\": 50, \"truncated\": true, \"elapsed_ms\": 2.41}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..35163bc71f81c32af8aa2152a5e3de2614c95b7a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/run_manifest.json @@ -0,0 +1,59 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "n4", + "started_at": "2026-05-19T16:32:28.147772+00:00", + "ended_at": "2026-05-19T16:32:28.151391+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_n4_23b41a2d73b152df", + "problem_id": "v2p_n4_2667e9a259d9a859", + "dataset_id": "n4", + "template_id": "tpl_missing_target_interaction", + "template_name": "Missingness-Target Interaction", + "family_id": "missingness_structure", + "canonical_subitem_id": "co_missingness_pattern_consistency", + "intended_facet_id": "missing_target_interaction", + "variant_semantic_role": "missing_target_interaction", + "subitem_assignment_source": "template_fixed", + "source_kind": "deterministic", + "realization_mode": "deterministic", + "gate_priority": "deterministic", + "extended_family": false, + "question": "Use template Missingness-Target Interaction to probe co_missingness_pattern_consistency with semantic role missing_target_interaction. Focus on target_col=target, missing_col=feature_103.", + "bindings": { + "missing_col": "feature_103", + "target_col": "target" + }, + "binding_roles": [ + "missing_col", + "target_col" + ], + "coverage_target_min": "enumerate_all_applicable", + "runtime_sql_skeleton": "SELECT\n {target_col},\n COUNT(*) AS total_rows,\n SUM(CASE WHEN {missing_col} IS NULL THEN 1 ELSE 0 END) AS missing_rows,\n AVG(CASE WHEN {missing_col} IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate\nFROM {table}\nGROUP BY {target_col}\nORDER BY missing_rate DESC, total_rows DESC;", + "notes": [ + "default_facets=missing_rate_by_subgroup,missing_target_interaction", + "template_selection_mode=deterministic", + "problem_index_within_template=3", + "sql_variant_index=1/1" + ], + "template_selection_mode": "deterministic", + "selected_template_rank": 0, + "problem_index_within_template": 3, + "sql_variant_index": 1, + "sql_variant_total": 1 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_23b41a2d73b152df.sql", + "usage_summary": { + "engine": "template", + "input_tokens": 0, + "cached_input_tokens": 0, + "output_tokens": 0, + "total_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "none" + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..96c9ff4feec395919fc26411d18d078b8af6e1c7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_23b41a2d73b152df/usage_summary.json @@ -0,0 +1,9 @@ +{ + "engine": "template", + "input_tokens": 0, + "cached_input_tokens": 0, + "output_tokens": 0, + "total_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "none" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_324d95204b6a176a/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_324d95204b6a176a/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..a26b2d04328caeb7c1d772582ae77699d899671d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_324d95204b6a176a/run_manifest.json @@ -0,0 +1,69 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "n4", + "started_at": "2026-05-19T16:30:39.602344+00:00", + "ended_at": "2026-05-19T16:30:47.680298+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_n4_324d95204b6a176a", + "problem_id": "v2p_n4_be8007e6190f178c", + "dataset_id": "n4", + "template_id": "tpl_m4_window_partition_avg", + "template_name": "Window Partition Average", + "family_id": "conditional_dependency_structure", + "canonical_subitem_id": "slice_level_consistency", + "intended_facet_id": "conditional_interaction_hotspots", + "variant_semantic_role": "ranked_signal_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Window Partition Average to probe slice_level_consistency with semantic role ranked_signal_view. Focus on group_col=feature_104, measure_col=feature_10.", + "bindings": { + "group_col": "feature_104", + "measure_col": "feature_10", + "top_k": 19, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.2588, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "measure_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT DISTINCT {group_col},\n AVG({measure_col}) OVER (PARTITION BY {group_col}) AS avg_measure\nFROM {table}\nORDER BY avg_measure DESC;", + "notes": [ + "default_facets=conditional_interaction_hotspots", + "template_selection_mode=rule", + "problem_index_within_template=3", + "sql_variant_index=2/2", + "binding_index=134" + ], + "template_selection_mode": "rule", + "selected_template_rank": 12, + "problem_index_within_template": 3, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_324d95204b6a176a/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_324d95204b6a176a/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..ab4ab4ea999449f3553e8a877ac5c5b3547135e0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_324d95204b6a176a/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:30:43.118821+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3510.69, "started_at": "2026-05-19T16:30:39.606949+00:00", "ended_at": "2026-05-19T16:30:43.117687+00:00", "prompt_metrics": {"chars": 50723, "bytes_utf8": 50723, "lines": 1632, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4113-3b50-7bf1-bdca-ec1b8866035b\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:30:47.680188+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3555.51, "started_at": "2026-05-19T16:30:44.123352+00:00", "ended_at": "2026-05-19T16:30:47.678934+00:00", "prompt_metrics": {"chars": 50723, "bytes_utf8": 50723, "lines": 1632, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4113-4d02-7e00-8e97-03341f2f3418\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_3907d2bbeb93bda1/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_3907d2bbeb93bda1/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..8c43514e00a46f5b0c10f4898f1ebbef94fc5c83 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_3907d2bbeb93bda1/run_manifest.json @@ -0,0 +1,69 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "n4", + "started_at": "2026-05-19T16:19:33.576013+00:00", + "ended_at": "2026-05-19T16:19:40.780699+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_n4_3907d2bbeb93bda1", + "problem_id": "v2p_n4_37508f28938ed7a0", + "dataset_id": "n4", + "template_id": "tpl_tpch_relative_total_threshold", + "template_name": "Relative-to-Total Extreme Threshold", + "family_id": "tail_rarity_structure", + "canonical_subitem_id": "tail_mass_similarity", + "intended_facet_id": "tail_ranked_signal", + "variant_semantic_role": "filtered_stable_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Relative-to-Total Extreme Threshold to probe tail_mass_similarity with semantic role filtered_stable_view. Focus on group_col=feature_5, measure_col=feature_80.", + "bindings": { + "group_col": "feature_5", + "measure_col": "feature_80", + "top_k": 18, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.0756, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "measure_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col}, SUM({measure_col}) AS group_value\n FROM {table}\n GROUP BY {group_col}\n), total AS (\n SELECT SUM(group_value) AS total_value\n FROM grouped\n)\nSELECT g.{group_col}, g.group_value\nFROM grouped AS g\nCROSS JOIN total AS t\nWHERE g.group_value > t.total_value * {fraction_threshold}\nORDER BY g.group_value DESC;", + "notes": [ + "default_facets=tail_ranked_signal", + "template_selection_mode=rule", + "problem_index_within_template=7", + "sql_variant_index=2/2", + "binding_index=78" + ], + "template_selection_mode": "rule", + "selected_template_rank": 7, + "problem_index_within_template": 7, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_3907d2bbeb93bda1/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_3907d2bbeb93bda1/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..64ea3e81525984b7d6843be1e431f02ddb7c8db1 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_3907d2bbeb93bda1/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:19:36.840619+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3259.86, "started_at": "2026-05-19T16:19:33.579839+00:00", "ended_at": "2026-05-19T16:19:36.839721+00:00", "prompt_metrics": {"chars": 51191, "bytes_utf8": 51191, "lines": 1632, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4109-1150-7ba2-bd0f-a0d39687e722\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:19:40.780580+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 2936.64, "started_at": "2026-05-19T16:19:37.842432+00:00", "ended_at": "2026-05-19T16:19:40.779108+00:00", "prompt_metrics": {"chars": 51191, "bytes_utf8": 51191, "lines": 1632, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4109-21fd-7241-908d-6935cfdb2a9e\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..66b3ae89a9c2965ca79e1343977fb47eefaafb00 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/final_answer.txt @@ -0,0 +1 @@ +{"row_count": null, "preview_rows": [{"feature_76": "0.5", "total_rows": 1201, "missing_rows": 0, "missing_rate": 0.0}, {"feature_76": "0", "total_rows": 766, "missing_rows": 0, "missing_rate": 0.0}, {"feature_76": "1", "total_rows": 27, "missing_rows": 0, "missing_rate": 0.0}]} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..41253c3da23cc2455fab3d04cdcde39640d938cc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/generated_sql.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_5270a7ea432b1a1a +-- problem_id: v2p_n4_51c39cdfaf4bf615 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_76", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_113" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_113" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_76" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..cfda54220527a3a70e2b085834876bb9972df1fb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/query_results.jsonl @@ -0,0 +1 @@ +{"node_name": "v2_template", "tool_name": "sqlite_query", "query": "-- sql_source_version: v2\n-- sql_source_label: v2_current\n-- sql_source_run_id: v2_cli_20260502_081223_e\n-- sql_source_dataset_id: n4\n-- family_id: missingness_structure\n-- canonical_subitem_id: co_missingness_pattern_consistency\n-- intended_facet_id: missing_target_interaction\n-- variant_semantic_role: missing_target_interaction\n-- template_id: tpl_missing_target_interaction\n-- query_record_id: v2q_n4_5270a7ea432b1a1a\n-- problem_id: v2p_n4_51c39cdfaf4bf615\n-- realization_mode: deterministic\n-- source_kind: deterministic\nSELECT\n \"feature_76\",\n COUNT(*) AS total_rows,\n SUM(CASE WHEN \"feature_113\" IS NULL THEN 1 ELSE 0 END) AS missing_rows,\n AVG(CASE WHEN \"feature_113\" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate\nFROM \"n4\"\nGROUP BY \"feature_76\"\nORDER BY missing_rate DESC, total_rows DESC;", "result": "{\"query\": \"-- sql_source_version: v2\\n-- sql_source_label: v2_current\\n-- sql_source_run_id: v2_cli_20260502_081223_e\\n-- sql_source_dataset_id: n4\\n-- family_id: missingness_structure\\n-- canonical_subitem_id: co_missingness_pattern_consistency\\n-- intended_facet_id: missing_target_interaction\\n-- variant_semantic_role: missing_target_interaction\\n-- template_id: tpl_missing_target_interaction\\n-- query_record_id: v2q_n4_5270a7ea432b1a1a\\n-- problem_id: v2p_n4_51c39cdfaf4bf615\\n-- realization_mode: deterministic\\n-- source_kind: deterministic\\nSELECT\\n \\\"feature_76\\\",\\n COUNT(*) AS total_rows,\\n SUM(CASE WHEN \\\"feature_113\\\" IS NULL THEN 1 ELSE 0 END) AS missing_rows,\\n AVG(CASE WHEN \\\"feature_113\\\" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate\\nFROM \\\"n4\\\"\\nGROUP BY \\\"feature_76\\\"\\nORDER BY missing_rate DESC, total_rows DESC;\", \"columns\": [\"feature_76\", \"total_rows\", \"missing_rows\", \"missing_rate\"], \"rows\": [{\"feature_76\": \"0.5\", \"total_rows\": 1201, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"feature_76\": \"0\", \"total_rows\": 766, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"feature_76\": \"1\", \"total_rows\": 27, \"missing_rows\": 0, \"missing_rate\": 0.0}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 2.04}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..5e701361df09c3f81baab73af2e2eb769ff988e7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/run_manifest.json @@ -0,0 +1,59 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "n4", + "started_at": "2026-05-19T16:32:28.168375+00:00", + "ended_at": "2026-05-19T16:32:28.171366+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_n4_5270a7ea432b1a1a", + "problem_id": "v2p_n4_51c39cdfaf4bf615", + "dataset_id": "n4", + "template_id": "tpl_missing_target_interaction", + "template_name": "Missingness-Target Interaction", + "family_id": "missingness_structure", + "canonical_subitem_id": "co_missingness_pattern_consistency", + "intended_facet_id": "missing_target_interaction", + "variant_semantic_role": "missing_target_interaction", + "subitem_assignment_source": "template_fixed", + "source_kind": "deterministic", + "realization_mode": "deterministic", + "gate_priority": "deterministic", + "extended_family": false, + "question": "Use template Missingness-Target Interaction to probe co_missingness_pattern_consistency with semantic role missing_target_interaction. Focus on target_col=feature_76, missing_col=feature_113.", + "bindings": { + "missing_col": "feature_113", + "target_col": "feature_76" + }, + "binding_roles": [ + "missing_col", + "target_col" + ], + "coverage_target_min": "enumerate_all_applicable", + "runtime_sql_skeleton": "SELECT\n {target_col},\n COUNT(*) AS total_rows,\n SUM(CASE WHEN {missing_col} IS NULL THEN 1 ELSE 0 END) AS missing_rows,\n AVG(CASE WHEN {missing_col} IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate\nFROM {table}\nGROUP BY {target_col}\nORDER BY missing_rate DESC, total_rows DESC;", + "notes": [ + "default_facets=missing_rate_by_subgroup,missing_target_interaction", + "template_selection_mode=deterministic", + "problem_index_within_template=8", + "sql_variant_index=1/1" + ], + "template_selection_mode": "deterministic", + "selected_template_rank": 0, + "problem_index_within_template": 8, + "sql_variant_index": 1, + "sql_variant_total": 1 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_5270a7ea432b1a1a.sql", + "usage_summary": { + "engine": "template", + "input_tokens": 0, + "cached_input_tokens": 0, + "output_tokens": 0, + "total_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "none" + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..96c9ff4feec395919fc26411d18d078b8af6e1c7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_5270a7ea432b1a1a/usage_summary.json @@ -0,0 +1,9 @@ +{ + "engine": "template", + "input_tokens": 0, + "cached_input_tokens": 0, + "output_tokens": 0, + "total_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "none" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_7e3165ba6ed10029/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_7e3165ba6ed10029/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..eb9cec3ac624b5cfa970da9ea235b570f6e1c9fc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_7e3165ba6ed10029/run_manifest.json @@ -0,0 +1,69 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "n4", + "started_at": "2026-05-19T16:31:19.292859+00:00", + "ended_at": "2026-05-19T16:31:27.774883+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_n4_7e3165ba6ed10029", + "problem_id": "v2p_n4_5f5b90a6bbd4045f", + "dataset_id": "n4", + "template_id": "tpl_m4_window_partition_avg", + "template_name": "Window Partition Average", + "family_id": "conditional_dependency_structure", + "canonical_subitem_id": "direction_consistency", + "intended_facet_id": "conditional_rate_shift", + "variant_semantic_role": "ranked_signal_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Window Partition Average to probe direction_consistency with semantic role ranked_signal_view. Focus on group_col=feature_125, measure_col=feature_13.", + "bindings": { + "group_col": "feature_125", + "measure_col": "feature_13", + "top_k": 12, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.61, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "measure_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT DISTINCT {group_col},\n AVG({measure_col}) OVER (PARTITION BY {group_col}) AS avg_measure\nFROM {table}\nORDER BY avg_measure DESC;", + "notes": [ + "default_facets=conditional_rate_shift", + "template_selection_mode=rule", + "problem_index_within_template=6", + "sql_variant_index=1/2", + "binding_index=137" + ], + "template_selection_mode": "rule", + "selected_template_rank": 12, + "problem_index_within_template": 6, + "sql_variant_index": 1, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..66b3ae89a9c2965ca79e1343977fb47eefaafb00 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/final_answer.txt @@ -0,0 +1 @@ +{"row_count": null, "preview_rows": [{"feature_76": "0.5", "total_rows": 1201, "missing_rows": 0, "missing_rate": 0.0}, {"feature_76": "0", "total_rows": 766, "missing_rows": 0, "missing_rate": 0.0}, {"feature_76": "1", "total_rows": 27, "missing_rows": 0, "missing_rate": 0.0}]} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..a2afe16a6fd08c62f7a33a6115f68aa1c88b5ecc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/generated_sql.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_80c0b30472e16215 +-- problem_id: v2p_n4_2cac8fdae08a98fb +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_76", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_117" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_117" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_76" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..3f69f194ef79a23fed536c814217cc13731eb86b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/query_results.jsonl @@ -0,0 +1 @@ +{"node_name": "v2_template", "tool_name": "sqlite_query", "query": "-- sql_source_version: v2\n-- sql_source_label: v2_current\n-- sql_source_run_id: v2_cli_20260502_081223_e\n-- sql_source_dataset_id: n4\n-- family_id: missingness_structure\n-- canonical_subitem_id: co_missingness_pattern_consistency\n-- intended_facet_id: missing_target_interaction\n-- variant_semantic_role: missing_target_interaction\n-- template_id: tpl_missing_target_interaction\n-- query_record_id: v2q_n4_80c0b30472e16215\n-- problem_id: v2p_n4_2cac8fdae08a98fb\n-- realization_mode: deterministic\n-- source_kind: deterministic\nSELECT\n \"feature_76\",\n COUNT(*) AS total_rows,\n SUM(CASE WHEN \"feature_117\" IS NULL THEN 1 ELSE 0 END) AS missing_rows,\n AVG(CASE WHEN \"feature_117\" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate\nFROM \"n4\"\nGROUP BY \"feature_76\"\nORDER BY missing_rate DESC, total_rows DESC;", "result": "{\"query\": \"-- sql_source_version: v2\\n-- sql_source_label: v2_current\\n-- sql_source_run_id: v2_cli_20260502_081223_e\\n-- sql_source_dataset_id: n4\\n-- family_id: missingness_structure\\n-- canonical_subitem_id: co_missingness_pattern_consistency\\n-- intended_facet_id: missing_target_interaction\\n-- variant_semantic_role: missing_target_interaction\\n-- template_id: tpl_missing_target_interaction\\n-- query_record_id: v2q_n4_80c0b30472e16215\\n-- problem_id: v2p_n4_2cac8fdae08a98fb\\n-- realization_mode: deterministic\\n-- source_kind: deterministic\\nSELECT\\n \\\"feature_76\\\",\\n COUNT(*) AS total_rows,\\n SUM(CASE WHEN \\\"feature_117\\\" IS NULL THEN 1 ELSE 0 END) AS missing_rows,\\n AVG(CASE WHEN \\\"feature_117\\\" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate\\nFROM \\\"n4\\\"\\nGROUP BY \\\"feature_76\\\"\\nORDER BY missing_rate DESC, total_rows DESC;\", \"columns\": [\"feature_76\", \"total_rows\", \"missing_rows\", \"missing_rate\"], \"rows\": [{\"feature_76\": \"0.5\", \"total_rows\": 1201, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"feature_76\": \"0\", \"total_rows\": 766, \"missing_rows\": 0, \"missing_rate\": 0.0}, {\"feature_76\": \"1\", \"total_rows\": 27, \"missing_rows\": 0, \"missing_rate\": 0.0}], \"row_count_returned\": 3, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 2.08}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..b8ad85eb70b6ca8f5ac4283cb1d4fdf5a93ba672 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/run_manifest.json @@ -0,0 +1,59 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "n4", + "started_at": "2026-05-19T16:32:28.175562+00:00", + "ended_at": "2026-05-19T16:32:28.178637+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_n4_80c0b30472e16215", + "problem_id": "v2p_n4_2cac8fdae08a98fb", + "dataset_id": "n4", + "template_id": "tpl_missing_target_interaction", + "template_name": "Missingness-Target Interaction", + "family_id": "missingness_structure", + "canonical_subitem_id": "co_missingness_pattern_consistency", + "intended_facet_id": "missing_target_interaction", + "variant_semantic_role": "missing_target_interaction", + "subitem_assignment_source": "template_fixed", + "source_kind": "deterministic", + "realization_mode": "deterministic", + "gate_priority": "deterministic", + "extended_family": false, + "question": "Use template Missingness-Target Interaction to probe co_missingness_pattern_consistency with semantic role missing_target_interaction. Focus on target_col=feature_76, missing_col=feature_117.", + "bindings": { + "missing_col": "feature_117", + "target_col": "feature_76" + }, + "binding_roles": [ + "missing_col", + "target_col" + ], + "coverage_target_min": "enumerate_all_applicable", + "runtime_sql_skeleton": "SELECT\n {target_col},\n COUNT(*) AS total_rows,\n SUM(CASE WHEN {missing_col} IS NULL THEN 1 ELSE 0 END) AS missing_rows,\n AVG(CASE WHEN {missing_col} IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate\nFROM {table}\nGROUP BY {target_col}\nORDER BY missing_rate DESC, total_rows DESC;", + "notes": [ + "default_facets=missing_rate_by_subgroup,missing_target_interaction", + "template_selection_mode=deterministic", + "problem_index_within_template=10", + "sql_variant_index=1/1" + ], + "template_selection_mode": "deterministic", + "selected_template_rank": 0, + "problem_index_within_template": 10, + "sql_variant_index": 1, + "sql_variant_total": 1 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_80c0b30472e16215.sql", + "usage_summary": { + "engine": "template", + "input_tokens": 0, + "cached_input_tokens": 0, + "output_tokens": 0, + "total_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "none" + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..96c9ff4feec395919fc26411d18d078b8af6e1c7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_80c0b30472e16215/usage_summary.json @@ -0,0 +1,9 @@ +{ + "engine": "template", + "input_tokens": 0, + "cached_input_tokens": 0, + "output_tokens": 0, + "total_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "none" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_a42aac84de962e48/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_a42aac84de962e48/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..70b7bca1a9ee8015bf796a42e0ae4186db45ec20 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_a42aac84de962e48/run_manifest.json @@ -0,0 +1,67 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "n4", + "started_at": "2026-05-19T16:27:57.827624+00:00", + "ended_at": "2026-05-19T16:28:05.980493+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_n4_a42aac84de962e48", + "problem_id": "v2p_n4_467552c5289531e1", + "dataset_id": "n4", + "template_id": "tpl_tail_low_support_group_count_v2", + "template_name": "Low-Support Group Count", + "family_id": "tail_rarity_structure", + "canonical_subitem_id": "tail_set_consistency", + "intended_facet_id": "low_support_extremes", + "variant_semantic_role": "count_distribution", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Low-Support Group Count to probe tail_set_consistency with semantic role count_distribution. Focus on group_col=feature_5.", + "bindings": { + "group_col": "feature_5", + "top_k": 15, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.07, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT\n {group_col},\n COUNT(*) AS support\nFROM {table}\nGROUP BY {group_col}\nORDER BY support ASC, {group_col}\nLIMIT {top_k};", + "notes": [ + "default_facets=low_support_extremes", + "template_selection_mode=rule", + "problem_index_within_template=1", + "sql_variant_index=2/2", + "binding_index=120" + ], + "template_selection_mode": "rule", + "selected_template_rank": 11, + "problem_index_within_template": 1, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_a42aac84de962e48/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_a42aac84de962e48/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..ee8e6b28f28b70ee0ffcac9945029e24d98131c3 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_a42aac84de962e48/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:28:01.281245+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3446.59, "started_at": "2026-05-19T16:27:57.833191+00:00", "ended_at": "2026-05-19T16:28:01.279828+00:00", "prompt_metrics": {"chars": 50619, "bytes_utf8": 50619, "lines": 1630, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4110-c397-7bf1-a63f-8701fb37f2a0\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:28:05.980380+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3695.35, "started_at": "2026-05-19T16:28:02.283803+00:00", "ended_at": "2026-05-19T16:28:05.979206+00:00", "prompt_metrics": {"chars": 50619, "bytes_utf8": 50619, "lines": 1630, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4110-d4ea-7982-9bb8-8d8569d35a9c\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/final_answer.txt b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/final_answer.txt new file mode 100644 index 0000000000000000000000000000000000000000..c7fd1a905bf2bffcc4d82d7d495dbf5147e88ae9 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/final_answer.txt @@ -0,0 +1 @@ +{"row_count": null, "preview_rows": [{"feature_17": "1", "support": 1193, "avg_response": 27.280804694048616}, {"feature_17": "0", "support": 558, "avg_response": 31.338709677419356}, {"feature_17": "0.99", "support": 23, "avg_response": 23.73913043478261}, {"feature_17": "0.98", "support": 20, "avg_response": 30.85}, {"feature_17": "0.97", "support": 15, "avg_response": 21.333333333333332}]} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/generated_sql.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/generated_sql.sql new file mode 100644 index 0000000000000000000000000000000000000000..e079e04d3da1d17494f6a411266c237e3b3a2320 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/generated_sql.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_b999cd6fdf87af58 +-- problem_id: v2p_n4_e1b22e3de98fd505 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_17", + COUNT(*) AS support, + AVG("feature_1") AS avg_response +FROM "n4" +GROUP BY "feature_17" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/query_results.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/query_results.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..a6596f08570674bf6daa6f6cdc60171932929f98 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/query_results.jsonl @@ -0,0 +1 @@ +{"node_name": "v2_template", "tool_name": "sqlite_query", "query": "-- sql_source_version: v2\n-- sql_source_label: v2_current\n-- sql_source_run_id: v2_cli_20260502_081223_e\n-- sql_source_dataset_id: n4\n-- family_id: cardinality_structure\n-- canonical_subitem_id: high_cardinality_response_stability\n-- intended_facet_id: target_cardinality_cross_section\n-- variant_semantic_role: focused_target_view\n-- template_id: tpl_cardinality_high_card_response_stability\n-- query_record_id: v2q_n4_b999cd6fdf87af58\n-- problem_id: v2p_n4_e1b22e3de98fd505\n-- realization_mode: deterministic\n-- source_kind: deterministic\nSELECT\n \"feature_17\",\n COUNT(*) AS support,\n AVG(\"feature_1\") AS avg_response\nFROM \"n4\"\nGROUP BY \"feature_17\"\nHAVING COUNT(*) >= 5.0\nORDER BY support DESC, avg_response DESC;", "result": "{\"query\": \"-- sql_source_version: v2\\n-- sql_source_label: v2_current\\n-- sql_source_run_id: v2_cli_20260502_081223_e\\n-- sql_source_dataset_id: n4\\n-- family_id: cardinality_structure\\n-- canonical_subitem_id: high_cardinality_response_stability\\n-- intended_facet_id: target_cardinality_cross_section\\n-- variant_semantic_role: focused_target_view\\n-- template_id: tpl_cardinality_high_card_response_stability\\n-- query_record_id: v2q_n4_b999cd6fdf87af58\\n-- problem_id: v2p_n4_e1b22e3de98fd505\\n-- realization_mode: deterministic\\n-- source_kind: deterministic\\nSELECT\\n \\\"feature_17\\\",\\n COUNT(*) AS support,\\n AVG(\\\"feature_1\\\") AS avg_response\\nFROM \\\"n4\\\"\\nGROUP BY \\\"feature_17\\\"\\nHAVING COUNT(*) >= 5.0\\nORDER BY support DESC, avg_response DESC;\", \"columns\": [\"feature_17\", \"support\", \"avg_response\"], \"rows\": [{\"feature_17\": \"1\", \"support\": 1193, \"avg_response\": 27.280804694048616}, {\"feature_17\": \"0\", \"support\": 558, \"avg_response\": 31.338709677419356}, {\"feature_17\": \"0.99\", \"support\": 23, \"avg_response\": 23.73913043478261}, {\"feature_17\": \"0.98\", \"support\": 20, \"avg_response\": 30.85}, {\"feature_17\": \"0.97\", \"support\": 15, \"avg_response\": 21.333333333333332}, {\"feature_17\": \"0.91\", \"support\": 11, \"avg_response\": 36.90909090909091}, {\"feature_17\": \"0.96\", \"support\": 9, \"avg_response\": 33.888888888888886}, {\"feature_17\": \"0.86\", \"support\": 9, \"avg_response\": 25.444444444444443}, {\"feature_17\": \"0.79\", \"support\": 9, \"avg_response\": 25.0}, {\"feature_17\": \"0.93\", \"support\": 8, \"avg_response\": 32.5}, {\"feature_17\": \"0.87\", \"support\": 7, \"avg_response\": 35.0}, {\"feature_17\": \"0.85\", \"support\": 7, \"avg_response\": 31.714285714285715}, {\"feature_17\": \"0.95\", \"support\": 7, \"avg_response\": 30.714285714285715}, {\"feature_17\": \"0.83\", \"support\": 6, \"avg_response\": 30.666666666666668}, {\"feature_17\": \"0.81\", \"support\": 6, \"avg_response\": 29.166666666666668}, {\"feature_17\": \"0.9\", \"support\": 5, \"avg_response\": 35.4}, {\"feature_17\": \"0.94\", \"support\": 5, \"avg_response\": 32.0}, {\"feature_17\": \"0.88\", \"support\": 5, \"avg_response\": 24.0}], \"row_count_returned\": 18, \"row_limit\": 50, \"truncated\": false, \"elapsed_ms\": 1.74}"} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..afc67ddec251f361138871bc04b9174c269f1064 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/run_manifest.json @@ -0,0 +1,60 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "n4", + "started_at": "2026-05-19T16:32:28.262045+00:00", + "ended_at": "2026-05-19T16:32:28.264693+00:00", + "status": "completed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_n4_b999cd6fdf87af58", + "problem_id": "v2p_n4_e1b22e3de98fd505", + "dataset_id": "n4", + "template_id": "tpl_cardinality_high_card_response_stability", + "template_name": "High-Cardinality Response Stability", + "family_id": "cardinality_structure", + "canonical_subitem_id": "high_cardinality_response_stability", + "intended_facet_id": "target_cardinality_cross_section", + "variant_semantic_role": "focused_target_view", + "subitem_assignment_source": "template_fixed", + "source_kind": "deterministic", + "realization_mode": "deterministic", + "gate_priority": "deterministic", + "extended_family": true, + "question": "Use template High-Cardinality Response Stability to probe high_cardinality_response_stability with semantic role focused_target_view. Focus on measure_col=feature_1, key_col=feature_17.", + "bindings": { + "key_col": "feature_17", + "measure_col": "feature_1", + "min_support": 5 + }, + "binding_roles": [ + "key_col", + "target_col" + ], + "coverage_target_min": "enumerate_all_applicable", + "runtime_sql_skeleton": "SELECT\n {key_col},\n COUNT(*) AS support,\n AVG({measure_col}) AS avg_response\nFROM {table}\nGROUP BY {key_col}\nHAVING COUNT(*) >= {min_support}\nORDER BY support DESC, avg_response DESC;", + "notes": [ + "default_facets=target_cardinality_cross_section", + "template_selection_mode=deterministic", + "problem_index_within_template=10", + "sql_variant_index=1/1" + ], + "template_selection_mode": "deterministic", + "selected_template_rank": 0, + "problem_index_within_template": 10, + "sql_variant_index": 1, + "sql_variant_total": 1 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "generated_sql_path": "/data/jialinzhang/TabQueryBench/sql_workloads/v2_current/runs_and_launches/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_b999cd6fdf87af58.sql", + "usage_summary": { + "engine": "template", + "input_tokens": 0, + "cached_input_tokens": 0, + "output_tokens": 0, + "total_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "none" + } +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/usage_summary.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/usage_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..96c9ff4feec395919fc26411d18d078b8af6e1c7 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_b999cd6fdf87af58/usage_summary.json @@ -0,0 +1,9 @@ +{ + "engine": "template", + "input_tokens": 0, + "cached_input_tokens": 0, + "output_tokens": 0, + "total_tokens": 0, + "estimated_total_tokens": 0, + "usage_source": "none" +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_cc87859387016ab6/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_cc87859387016ab6/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..a9a3b13a017ae525ccdfd7197cb762e588ea9cd0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_cc87859387016ab6/run_manifest.json @@ -0,0 +1,69 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "n4", + "started_at": "2026-05-19T16:20:14.249317+00:00", + "ended_at": "2026-05-19T16:20:24.815667+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_n4_cc87859387016ab6", + "problem_id": "v2p_n4_94651746c85c9166", + "dataset_id": "n4", + "template_id": "tpl_tpch_relative_total_threshold", + "template_name": "Relative-to-Total Extreme Threshold", + "family_id": "tail_rarity_structure", + "canonical_subitem_id": "tail_mass_similarity", + "intended_facet_id": "tail_ranked_signal", + "variant_semantic_role": "filtered_stable_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Relative-to-Total Extreme Threshold to probe tail_mass_similarity with semantic role filtered_stable_view. Focus on group_col=feature_104, measure_col=feature_82.", + "bindings": { + "group_col": "feature_104", + "measure_col": "feature_82", + "top_k": 15, + "top_n": 4, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.05, + "baseline_multiplier": 1.75, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 4, + "measure_threshold": 0.6104, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "measure_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "WITH grouped AS (\n SELECT {group_col}, SUM({measure_col}) AS group_value\n FROM {table}\n GROUP BY {group_col}\n), total AS (\n SELECT SUM(group_value) AS total_value\n FROM grouped\n)\nSELECT g.{group_col}, g.group_value\nFROM grouped AS g\nCROSS JOIN total AS t\nWHERE g.group_value > t.total_value * {fraction_threshold}\nORDER BY g.group_value DESC;", + "notes": [ + "default_facets=tail_ranked_signal", + "template_selection_mode=rule", + "problem_index_within_template=9", + "sql_variant_index=2/2", + "binding_index=80" + ], + "template_selection_mode": "rule", + "selected_template_rank": 7, + "problem_index_within_template": 9, + "sql_variant_index": 2, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_cc87859387016ab6/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_cc87859387016ab6/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..84c0414013690a04763718ca15dc8517071d2be2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_cc87859387016ab6/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:20:19.054999+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 4800.98, "started_at": "2026-05-19T16:20:14.253144+00:00", "ended_at": "2026-05-19T16:20:19.054151+00:00", "prompt_metrics": {"chars": 51195, "bytes_utf8": 51195, "lines": 1632, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4109-b023-74d0-b036-c53836e088fe\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:20:24.815573+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 4756.04, "started_at": "2026-05-19T16:20:20.058542+00:00", "ended_at": "2026-05-19T16:20:24.814634+00:00", "prompt_metrics": {"chars": 51195, "bytes_utf8": 51195, "lines": 1632, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4109-c6dd-7781-adb8-122104b6806a\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_e8dd021f5719cfb3/run_manifest.json b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_e8dd021f5719cfb3/run_manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..da8b862530ebf90ded00fc55a14b541400a4276d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_e8dd021f5719cfb3/run_manifest.json @@ -0,0 +1,69 @@ +{ + "run_id": "v2_cli_20260502_081223_e", + "dataset_id": "n4", + "started_at": "2026-05-19T16:30:47.680765+00:00", + "ended_at": "2026-05-19T16:30:55.199257+00:00", + "status": "failed", + "engine": "cli", + "question_record": { + "query_record_id": "v2q_n4_e8dd021f5719cfb3", + "problem_id": "v2p_n4_b0be20e77459978b", + "dataset_id": "n4", + "template_id": "tpl_m4_window_partition_avg", + "template_name": "Window Partition Average", + "family_id": "conditional_dependency_structure", + "canonical_subitem_id": "direction_consistency", + "intended_facet_id": "conditional_rate_shift", + "variant_semantic_role": "ranked_signal_view", + "subitem_assignment_source": "planner_selected", + "source_kind": "agent", + "realization_mode": "agent", + "gate_priority": "primary", + "extended_family": false, + "question": "Use template Window Partition Average to probe direction_consistency with semantic role ranked_signal_view. Focus on group_col=feature_116, measure_col=feature_11.", + "bindings": { + "group_col": "feature_116", + "measure_col": "feature_11", + "top_k": 10, + "top_n": 6, + "num_tiles": 10, + "percentile_value": 0.9, + "z_threshold": 2.0, + "fraction_threshold": 0.1, + "baseline_multiplier": 1.5, + "baseline_fraction": 0.1, + "min_group_size": 5, + "min_support": 5, + "measure_threshold": 0.17, + "time_grain": "month", + "lookback_rows": 3, + "current_period_start": "'2024-01-01'", + "current_period_end": "'2024-04-01'", + "previous_period_start": "'2023-10-01'", + "previous_period_end": "'2024-01-01'", + "drift_ratio_threshold": 0.8 + }, + "binding_roles": [ + "group_col", + "measure_col" + ], + "coverage_target_min": "5", + "runtime_sql_skeleton": "SELECT DISTINCT {group_col},\n AVG({measure_col}) OVER (PARTITION BY {group_col}) AS avg_measure\nFROM {table}\nORDER BY avg_measure DESC;", + "notes": [ + "default_facets=conditional_rate_shift", + "template_selection_mode=rule", + "problem_index_within_template=4", + "sql_variant_index=1/2", + "binding_index=135" + ], + "template_selection_mode": "rule", + "selected_template_rank": 12, + "problem_index_within_template": 4, + "sql_variant_index": 1, + "sql_variant_total": 2 + }, + "mode": "subitem_workload_v2", + "sql_source_version": "v2", + "sql_source_label": "v2_current", + "error": "AI CLI command failed with exit code 1: " +} \ No newline at end of file diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_e8dd021f5719cfb3/trace.jsonl b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_e8dd021f5719cfb3/trace.jsonl new file mode 100644 index 0000000000000000000000000000000000000000..467e8f5840dd963ce60669e7f83428931d5da43c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/artifacts/v2q_n4_e8dd021f5719cfb3/trace.jsonl @@ -0,0 +1,2 @@ +{"timestamp": "2026-05-19T16:30:50.933971+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 1, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3247.24, "started_at": "2026-05-19T16:30:47.685437+00:00", "ended_at": "2026-05-19T16:30:50.932719+00:00", "prompt_metrics": {"chars": 50717, "bytes_utf8": 50717, "lines": 1632, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4113-5ae5-7f72-ab28-c30f24771acf\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} +{"timestamp": "2026-05-19T16:30:55.199157+00:00", "event_type": "ai_cli_sql_generation_error", "engine": "v2-cli:codex", "attempt": 2, "command": "codex exec --skip-git-repo-check --disable plugins --sandbox read-only --cd \"/data/jialinzhang/SQLagent\" -m gpt-5.4 --json -", "returncode": 1, "elapsed_ms": 3261.92, "started_at": "2026-05-19T16:30:51.936160+00:00", "ended_at": "2026-05-19T16:30:55.198134+00:00", "prompt_metrics": {"chars": 50717, "bytes_utf8": 50717, "lines": 1632, "estimated_tokens": null}, "response_metrics": {"chars": 280, "bytes_utf8": 280, "lines": 4, "estimated_tokens": null}, "usage": {}, "stderr_preview": "", "stdout_preview": "{\"type\":\"thread.started\",\"thread_id\":\"019e4113-6b7e-75e2-9a14-75282759af66\"}\n{\"type\":\"turn.started\"}\n{\"type\":\"error\",\"message\":\"Quota exceeded. Check your plan and billing details.\"}\n{\"type\":\"turn.failed\",\"error\":{\"message\":\"Quota exceeded. Check your plan and billing details.\"}}", "error": "AI CLI command failed with exit code 1: "} diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_006e1e3fa5697e23.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_006e1e3fa5697e23.sql new file mode 100644 index 0000000000000000000000000000000000000000..3541156210af1b98d7d5b8e38e5d7e38c9793c5d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_006e1e3fa5697e23.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_006e1e3fa5697e23 +-- problem_id: v2p_n4_311020cbad056437 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_18", + COUNT(*) AS support, + AVG("feature_5") AS avg_response +FROM "n4" +GROUP BY "feature_18" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_054413ef3112316e.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_054413ef3112316e.sql new file mode 100644 index 0000000000000000000000000000000000000000..80123d8abe0301b14c2736d4434b90d7659da6db --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_054413ef3112316e.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_rate_by_subgroup +-- variant_semantic_role: missing_rate_by_subgroup +-- template_id: tpl_missing_rate_by_subgroup +-- query_record_id: v2q_n4_054413ef3112316e +-- problem_id: v2p_n4_9d117790d9149b59 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_5", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_103" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_103" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_5" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_0939969f8d6c3306.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_0939969f8d6c3306.sql new file mode 100644 index 0000000000000000000000000000000000000000..68fa12103c51032dbddbea732499b0bfd83aa184 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_0939969f8d6c3306.sql @@ -0,0 +1,28 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: support_rank_profile_consistency +-- intended_facet_id: support_concentration +-- variant_semantic_role: ranked_signal_view +-- template_id: tpl_cardinality_distinct_share_profile +-- query_record_id: v2q_n4_0939969f8d6c3306 +-- problem_id: v2p_n4_43a55554b0449d6a +-- realization_mode: deterministic +-- source_kind: deterministic +WITH grouped AS ( + SELECT "feature_117" AS value_label, COUNT(*) AS support + FROM "n4" + GROUP BY "feature_117" +), ranked AS ( + SELECT + value_label, + support, + CAST(support AS FLOAT) / NULLIF(SUM(support) OVER (), 0) AS support_share, + SUM(support) OVER (ORDER BY support DESC, value_label ROWS UNBOUNDED PRECEDING) AS cumulative_support + FROM grouped +) +SELECT * +FROM ranked +ORDER BY support DESC, value_label; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_0c47be1f6c30d241.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_0c47be1f6c30d241.sql new file mode 100644 index 0000000000000000000000000000000000000000..a88544eecbfbc792e1d07d5f86fa6914462cd1ca --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_0c47be1f6c30d241.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_0c47be1f6c30d241 +-- problem_id: v2p_n4_2f299e227c76b1e6 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_15", + COUNT(*) AS support, + AVG("feature_3") AS avg_response +FROM "n4" +GROUP BY "feature_15" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_17300869e94facda.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_17300869e94facda.sql new file mode 100644 index 0000000000000000000000000000000000000000..4a7cb1ea9122b6235a597d020654b34dac6ab511 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_17300869e94facda.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_17300869e94facda +-- problem_id: v2p_n4_9781a1810a2fd096 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "target", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_109" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_109" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "target" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_1968f644fdca1316.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_1968f644fdca1316.sql new file mode 100644 index 0000000000000000000000000000000000000000..686d1043ef4b7309f1f1a9d61c2454f4aeddcc5c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_1968f644fdca1316.sql @@ -0,0 +1,28 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: support_rank_profile_consistency +-- intended_facet_id: value_imbalance_profile +-- variant_semantic_role: ranked_signal_view +-- template_id: tpl_cardinality_distinct_share_profile +-- query_record_id: v2q_n4_1968f644fdca1316 +-- problem_id: v2p_n4_d4e7686ab95ef8ff +-- realization_mode: deterministic +-- source_kind: deterministic +WITH grouped AS ( + SELECT "feature_76" AS value_label, COUNT(*) AS support + FROM "n4" + GROUP BY "feature_76" +), ranked AS ( + SELECT + value_label, + support, + CAST(support AS FLOAT) / NULLIF(SUM(support) OVER (), 0) AS support_share, + SUM(support) OVER (ORDER BY support DESC, value_label ROWS UNBOUNDED PRECEDING) AS cumulative_support + FROM grouped +) +SELECT * +FROM ranked +ORDER BY support DESC, value_label; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_1b6cb18ed2c929f1.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_1b6cb18ed2c929f1.sql new file mode 100644 index 0000000000000000000000000000000000000000..644676bbd1ae375d253ca5b43f93cd6574bca340 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_1b6cb18ed2c929f1.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_1b6cb18ed2c929f1 +-- problem_id: v2p_n4_3029e67d47ab12c9 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_1", + COUNT(*) AS support, + AVG("feature_2") AS avg_response +FROM "n4" +GROUP BY "feature_1" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_23464f9514942fe3.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_23464f9514942fe3.sql new file mode 100644 index 0000000000000000000000000000000000000000..ccc41accb4e5c62c051e6f8a6aedddb3e76fb8f4 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_23464f9514942fe3.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_23464f9514942fe3 +-- problem_id: v2p_n4_ecfcf33676f81ba5 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_103" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_103" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_23b41a2d73b152df.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_23b41a2d73b152df.sql new file mode 100644 index 0000000000000000000000000000000000000000..f00791ca14743c30c56771f2f63db28f673d4531 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_23b41a2d73b152df.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_23b41a2d73b152df +-- problem_id: v2p_n4_2667e9a259d9a859 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "target", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_103" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_103" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "target" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_248758d925c623dd.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_248758d925c623dd.sql new file mode 100644 index 0000000000000000000000000000000000000000..c263a1c2b0d8bf416dae409aa13ab165a0519d78 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_248758d925c623dd.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_248758d925c623dd +-- problem_id: v2p_n4_e344bab178ceb575 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_7", + COUNT(*) AS support, + AVG("feature_3") AS avg_response +FROM "n4" +GROUP BY "feature_7" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_2b32450aa1857042.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_2b32450aa1857042.sql new file mode 100644 index 0000000000000000000000000000000000000000..4c84d6393920996c44ea99d600012398fd6c2d7e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_2b32450aa1857042.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_2b32450aa1857042 +-- problem_id: v2p_n4_7a931589ce65c265 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_107" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_107" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_2ec290d4357d5b2b.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_2ec290d4357d5b2b.sql new file mode 100644 index 0000000000000000000000000000000000000000..cb83c7bbdf19ce8fa126b099dc1c8366dfdc805a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_2ec290d4357d5b2b.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_2ec290d4357d5b2b +-- problem_id: v2p_n4_426ac9c5b0bd59f8 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_76", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_111" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_111" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_76" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_33c9050659924ac0.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_33c9050659924ac0.sql new file mode 100644 index 0000000000000000000000000000000000000000..8ff7172f44fa5fa554fe4521574cc8024b3f9807 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_33c9050659924ac0.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_33c9050659924ac0 +-- problem_id: v2p_n4_2f1200eeb476608b +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_2" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_2" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_3fa43ea66b662970.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_3fa43ea66b662970.sql new file mode 100644 index 0000000000000000000000000000000000000000..2a475d0a9700f9469c775621402148d0e14d8a8c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_3fa43ea66b662970.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_3fa43ea66b662970 +-- problem_id: v2p_n4_897b5529061d73d6 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_117" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_117" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_48f63428fa5944f4.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_48f63428fa5944f4.sql new file mode 100644 index 0000000000000000000000000000000000000000..ac3ca67d09b5a105681dfbdbebf201df7190e75e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_48f63428fa5944f4.sql @@ -0,0 +1,28 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: support_rank_profile_consistency +-- intended_facet_id: value_imbalance_profile +-- variant_semantic_role: ranked_signal_view +-- template_id: tpl_cardinality_distinct_share_profile +-- query_record_id: v2q_n4_48f63428fa5944f4 +-- problem_id: v2p_n4_c0f3ebd4d669e55c +-- realization_mode: deterministic +-- source_kind: deterministic +WITH grouped AS ( + SELECT "feature_125" AS value_label, COUNT(*) AS support + FROM "n4" + GROUP BY "feature_125" +), ranked AS ( + SELECT + value_label, + support, + CAST(support AS FLOAT) / NULLIF(SUM(support) OVER (), 0) AS support_share, + SUM(support) OVER (ORDER BY support DESC, value_label ROWS UNBOUNDED PRECEDING) AS cumulative_support + FROM grouped +) +SELECT * +FROM ranked +ORDER BY support DESC, value_label; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_49f9a6fa0c950af2.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_49f9a6fa0c950af2.sql new file mode 100644 index 0000000000000000000000000000000000000000..cf6f5ffe05263ae89401ba19226512d40ef7a9c5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_49f9a6fa0c950af2.sql @@ -0,0 +1,17 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_conditional_contrast +-- variant_semantic_role: collapsed_target_view +-- template_id: tpl_h2o_group_sum +-- query_record_id: v2q_n4_49f9a6fa0c950af2 +-- problem_id: v2p_n4_54c9489e8587e6c9 +-- realization_mode: agent +-- source_kind: agent +SELECT "feature_76", SUM(CAST(NULLIF("feature_2", '') AS REAL)) AS total_measure +FROM "n4" +GROUP BY "feature_76" +ORDER BY total_measure DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_4c98ae8eeedef177.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_4c98ae8eeedef177.sql new file mode 100644 index 0000000000000000000000000000000000000000..f534fee9bbc661f9ce58f050b8af8a8a62d1fd0a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_4c98ae8eeedef177.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_rate_by_subgroup +-- variant_semantic_role: missing_rate_by_subgroup +-- template_id: tpl_missing_rate_by_subgroup +-- query_record_id: v2q_n4_4c98ae8eeedef177 +-- problem_id: v2p_n4_e7ad676b3d10d695 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_117", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_124" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_124" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_117" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_5270a7ea432b1a1a.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_5270a7ea432b1a1a.sql new file mode 100644 index 0000000000000000000000000000000000000000..41253c3da23cc2455fab3d04cdcde39640d938cc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_5270a7ea432b1a1a.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_5270a7ea432b1a1a +-- problem_id: v2p_n4_51c39cdfaf4bf615 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_76", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_113" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_113" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_76" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_569f38d62426c4dd.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_569f38d62426c4dd.sql new file mode 100644 index 0000000000000000000000000000000000000000..64b41472b712dff6266a3f8351b59c3d6bd95790 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_569f38d62426c4dd.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_569f38d62426c4dd +-- problem_id: v2p_n4_03e7c0009f97c19c +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_115" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_115" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_585ba5569e7de54f.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_585ba5569e7de54f.sql new file mode 100644 index 0000000000000000000000000000000000000000..61b9123c7ed931ea27ff078e3c7106a1df6ee75c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_585ba5569e7de54f.sql @@ -0,0 +1,28 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: support_rank_profile_consistency +-- intended_facet_id: support_concentration +-- variant_semantic_role: ranked_signal_view +-- template_id: tpl_cardinality_distinct_share_profile +-- query_record_id: v2q_n4_585ba5569e7de54f +-- problem_id: v2p_n4_b0e530fc00c8280a +-- realization_mode: deterministic +-- source_kind: deterministic +WITH grouped AS ( + SELECT "feature_5" AS value_label, COUNT(*) AS support + FROM "n4" + GROUP BY "feature_5" +), ranked AS ( + SELECT + value_label, + support, + CAST(support AS FLOAT) / NULLIF(SUM(support) OVER (), 0) AS support_share, + SUM(support) OVER (ORDER BY support DESC, value_label ROWS UNBOUNDED PRECEDING) AS cumulative_support + FROM grouped +) +SELECT * +FROM ranked +ORDER BY support DESC, value_label; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_5c59a8b792c33250.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_5c59a8b792c33250.sql new file mode 100644 index 0000000000000000000000000000000000000000..0c39efbbacb0b3630ae3eb007d613fd60e75858a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_5c59a8b792c33250.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_rate_by_subgroup +-- variant_semantic_role: missing_rate_by_subgroup +-- template_id: tpl_missing_rate_by_subgroup +-- query_record_id: v2q_n4_5c59a8b792c33250 +-- problem_id: v2p_n4_f0515181dd8293cc +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_116", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_117" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_117" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_116" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_5c94391d1a029ab2.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_5c94391d1a029ab2.sql new file mode 100644 index 0000000000000000000000000000000000000000..09a9c291bb3020a089c69adab48f91bc6cc5e2b5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_5c94391d1a029ab2.sql @@ -0,0 +1,19 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_rank_order +-- variant_semantic_role: collapsed_target_view +-- template_id: tpl_h2o_group_sum +-- query_record_id: v2q_n4_5c94391d1a029ab2 +-- problem_id: v2p_n4_6084bd0bd35530bb +-- realization_mode: agent +-- source_kind: agent +SELECT + "feature_116", + SUM(CAST(NULLIF("feature_5", '') AS REAL)) AS total_measure +FROM "n4" +GROUP BY "feature_116" +ORDER BY total_measure DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_61a4ddb68d8989ff.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_61a4ddb68d8989ff.sql new file mode 100644 index 0000000000000000000000000000000000000000..e7360459b586c4388970723615b9e30b3c0948f0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_61a4ddb68d8989ff.sql @@ -0,0 +1,25 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: support_rank_profile_consistency +-- intended_facet_id: support_concentration +-- variant_semantic_role: count_distribution +-- template_id: tpl_cardinality_support_rank_profile +-- query_record_id: v2q_n4_61a4ddb68d8989ff +-- problem_id: v2p_n4_7493b0c474f0e361 +-- realization_mode: deterministic +-- source_kind: deterministic +WITH grouped AS ( + SELECT "feature_117" AS value_label, COUNT(*) AS support + FROM "n4" + GROUP BY "feature_117" +) +SELECT + value_label, + support, + CAST(support AS FLOAT) / NULLIF(SUM(support) OVER (), 0) AS support_share, + ROW_NUMBER() OVER (ORDER BY support DESC, value_label) AS support_rank +FROM grouped +ORDER BY support DESC, value_label; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_6306b4c718c42da5.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_6306b4c718c42da5.sql new file mode 100644 index 0000000000000000000000000000000000000000..e00c2746e76ae8cfd07f396f461832805cf7d15a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_6306b4c718c42da5.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_6306b4c718c42da5 +-- problem_id: v2p_n4_7a8a75db22e14667 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_76", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_124" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_124" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_76" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_666a961d45ca382d.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_666a961d45ca382d.sql new file mode 100644 index 0000000000000000000000000000000000000000..d18f8b62036185f7a6164dd96c765527407f4d99 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_666a961d45ca382d.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_666a961d45ca382d +-- problem_id: v2p_n4_4ef67075bc82036a +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_122" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_122" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_7017d9151babfe71.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_7017d9151babfe71.sql new file mode 100644 index 0000000000000000000000000000000000000000..c163edce6969a5e28748de92ff5defde3b1fd1bc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_7017d9151babfe71.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_7017d9151babfe71 +-- problem_id: v2p_n4_614b77d5b352da80 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "target", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_2" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_2" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "target" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_72ae2e5750bb1f29.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_72ae2e5750bb1f29.sql new file mode 100644 index 0000000000000000000000000000000000000000..5fa8214add45c919a4cc77ed07a28bdf7b089fa0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_72ae2e5750bb1f29.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_72ae2e5750bb1f29 +-- problem_id: v2p_n4_75663908db98a665 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_13", + COUNT(*) AS support, + AVG("feature_5") AS avg_response +FROM "n4" +GROUP BY "feature_13" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_739065f4985b4b1e.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_739065f4985b4b1e.sql new file mode 100644 index 0000000000000000000000000000000000000000..cfd2ffca63de2f09be3a53e9b41af72ede59cf22 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_739065f4985b4b1e.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_739065f4985b4b1e +-- problem_id: v2p_n4_e79cb4d4dfcee998 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_113" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_113" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_7482999b4207910b.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_7482999b4207910b.sql new file mode 100644 index 0000000000000000000000000000000000000000..dd74c1f615829efaf44397c36f2ce05fe4bae242 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_7482999b4207910b.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_rate_by_subgroup +-- variant_semantic_role: missing_rate_by_subgroup +-- template_id: tpl_missing_rate_by_subgroup +-- query_record_id: v2q_n4_7482999b4207910b +-- problem_id: v2p_n4_733d6fc16aabe02c +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_117", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_122" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_122" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_117" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_784be81f9e066125.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_784be81f9e066125.sql new file mode 100644 index 0000000000000000000000000000000000000000..2b120adf052a3464e5466ba9e5a32d7820691f6c --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_784be81f9e066125.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_784be81f9e066125 +-- problem_id: v2p_n4_b7516bb4571a0ed5 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_105" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_105" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_7abc029487edc1e8.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_7abc029487edc1e8.sql new file mode 100644 index 0000000000000000000000000000000000000000..9322fd09a487c6da032db79dc560f90c56f39b8d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_7abc029487edc1e8.sql @@ -0,0 +1,17 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_distribution_shift +-- variant_semantic_role: collapsed_target_view +-- template_id: tpl_h2o_group_sum +-- query_record_id: v2q_n4_7abc029487edc1e8 +-- problem_id: v2p_n4_89d04cb3a735da09 +-- realization_mode: agent +-- source_kind: agent +SELECT "feature_116", SUM(CAST(NULLIF("feature_5", '') AS REAL)) AS "total_measure" +FROM "n4" +GROUP BY "feature_116" +ORDER BY "total_measure" DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_80c0b30472e16215.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_80c0b30472e16215.sql new file mode 100644 index 0000000000000000000000000000000000000000..a2afe16a6fd08c62f7a33a6115f68aa1c88b5ecc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_80c0b30472e16215.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_80c0b30472e16215 +-- problem_id: v2p_n4_2cac8fdae08a98fb +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_76", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_117" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_117" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_76" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_85e4f22317081b5b.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_85e4f22317081b5b.sql new file mode 100644 index 0000000000000000000000000000000000000000..8f6126cc1b5fcffcd0ae1138a16f4256e6863050 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_85e4f22317081b5b.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_rate_by_subgroup +-- variant_semantic_role: missing_rate_by_subgroup +-- template_id: tpl_missing_rate_by_subgroup +-- query_record_id: v2q_n4_85e4f22317081b5b +-- problem_id: v2p_n4_e61c23c031d24194 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_104", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_111" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_111" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_104" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_88b46d9e17ba804d.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_88b46d9e17ba804d.sql new file mode 100644 index 0000000000000000000000000000000000000000..1ca05c85d8055c0e4ed625a7937a00419be89448 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_88b46d9e17ba804d.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_88b46d9e17ba804d +-- problem_id: v2p_n4_57c7d9b1e8d1505d +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "target", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_31" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_31" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "target" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_8a51846d729d5f86.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_8a51846d729d5f86.sql new file mode 100644 index 0000000000000000000000000000000000000000..eb27cd57f23967b09777897866193726c265ecbc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_8a51846d729d5f86.sql @@ -0,0 +1,17 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_conditional_contrast +-- variant_semantic_role: collapsed_target_view +-- template_id: tpl_h2o_group_sum +-- query_record_id: v2q_n4_8a51846d729d5f86 +-- problem_id: v2p_n4_157f1b064320f7b0 +-- realization_mode: agent +-- source_kind: agent +SELECT "feature_117", SUM(CAST(NULLIF("feature_6", '') AS REAL)) AS total_measure +FROM "n4" +GROUP BY "feature_117" +ORDER BY total_measure DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_8dc619c3d6959b8c.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_8dc619c3d6959b8c.sql new file mode 100644 index 0000000000000000000000000000000000000000..8f0266e0a5d47896adc71bedff11ddff44e3d75e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_8dc619c3d6959b8c.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_8dc619c3d6959b8c +-- problem_id: v2p_n4_efc29e0aaa5ddd87 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_9", + COUNT(*) AS support, + AVG("feature_1") AS avg_response +FROM "n4" +GROUP BY "feature_9" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_91bb9f59e72bdf4e.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_91bb9f59e72bdf4e.sql new file mode 100644 index 0000000000000000000000000000000000000000..65e0ab1842ecffa8ccaf91a0d456307d931787dd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_91bb9f59e72bdf4e.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_rate_by_subgroup +-- variant_semantic_role: missing_rate_by_subgroup +-- template_id: tpl_missing_rate_by_subgroup +-- query_record_id: v2q_n4_91bb9f59e72bdf4e +-- problem_id: v2p_n4_f5b81456468c4f05 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_76", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_109" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_109" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_76" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_91bff9d37bdaf540.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_91bff9d37bdaf540.sql new file mode 100644 index 0000000000000000000000000000000000000000..29ad16690a3655ae385597e520554ac34f8c6028 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_91bff9d37bdaf540.sql @@ -0,0 +1,19 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_rank_order +-- variant_semantic_role: collapsed_target_view +-- template_id: tpl_h2o_group_sum +-- query_record_id: v2q_n4_91bff9d37bdaf540 +-- problem_id: v2p_n4_00398ab680cbed46 +-- realization_mode: agent +-- source_kind: agent +SELECT + "feature_76", + SUM(CAST(NULLIF("feature_9", '') AS REAL)) AS "total_measure" +FROM "n4" +GROUP BY "feature_76" +ORDER BY "total_measure" DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_96772a23658e6eb9.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_96772a23658e6eb9.sql new file mode 100644 index 0000000000000000000000000000000000000000..d1a43a3029b8dcc9085a608311441dad15a876bf --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_96772a23658e6eb9.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_rate_by_subgroup +-- variant_semantic_role: missing_rate_by_subgroup +-- template_id: tpl_missing_rate_by_subgroup +-- query_record_id: v2q_n4_96772a23658e6eb9 +-- problem_id: v2p_n4_3b8e4c788ef0eaa9 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_104", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_113" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_113" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_104" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_96d35e8f889c6d9e.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_96d35e8f889c6d9e.sql new file mode 100644 index 0000000000000000000000000000000000000000..e9fcc8d3ac8ff9ab3484aa6aca8447a64c2624ec --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_96d35e8f889c6d9e.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_96d35e8f889c6d9e +-- problem_id: v2p_n4_43ab9e257f7780e6 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_3", + COUNT(*) AS support, + AVG("feature_1") AS avg_response +FROM "n4" +GROUP BY "feature_3" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_9a3c8777600fdf4e.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_9a3c8777600fdf4e.sql new file mode 100644 index 0000000000000000000000000000000000000000..f0e9f03f56b80b294e8585328f6d7363e2d99eca --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_9a3c8777600fdf4e.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_9a3c8777600fdf4e +-- problem_id: v2p_n4_c338c2310af30b5b +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_10", + COUNT(*) AS support, + AVG("feature_5") AS avg_response +FROM "n4" +GROUP BY "feature_10" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_9b7e51b41068cf69.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_9b7e51b41068cf69.sql new file mode 100644 index 0000000000000000000000000000000000000000..6e1b4ddf670f1670e0aca4b9ff5e767f843e525e --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_9b7e51b41068cf69.sql @@ -0,0 +1,19 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_rank_order +-- variant_semantic_role: collapsed_target_view +-- template_id: tpl_h2o_group_sum +-- query_record_id: v2q_n4_9b7e51b41068cf69 +-- problem_id: v2p_n4_a7209d0dec36d31b +-- realization_mode: agent +-- source_kind: agent +SELECT + "feature_5", + SUM(CAST(NULLIF("feature_1", '') AS REAL)) AS "total_measure" +FROM "n4" +GROUP BY "feature_5" +ORDER BY "total_measure" DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_a56d3d2f4308182e.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_a56d3d2f4308182e.sql new file mode 100644 index 0000000000000000000000000000000000000000..76bfb78d0a35cc51f408e0b8f6250455b87d2a3d --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_a56d3d2f4308182e.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_a56d3d2f4308182e +-- problem_id: v2p_n4_251e88e355b1b1a6 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_12", + COUNT(*) AS support, + AVG("feature_2") AS avg_response +FROM "n4" +GROUP BY "feature_12" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_aa04a4c2b006f35d.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_aa04a4c2b006f35d.sql new file mode 100644 index 0000000000000000000000000000000000000000..6f4d7c06454a2f32ca2ea7668c72c524390e5f81 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_aa04a4c2b006f35d.sql @@ -0,0 +1,25 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: support_rank_profile_consistency +-- intended_facet_id: support_concentration +-- variant_semantic_role: count_distribution +-- template_id: tpl_cardinality_support_rank_profile +-- query_record_id: v2q_n4_aa04a4c2b006f35d +-- problem_id: v2p_n4_14f4d22c4716dc3a +-- realization_mode: deterministic +-- source_kind: deterministic +WITH grouped AS ( + SELECT "feature_104" AS value_label, COUNT(*) AS support + FROM "n4" + GROUP BY "feature_104" +) +SELECT + value_label, + support, + CAST(support AS FLOAT) / NULLIF(SUM(support) OVER (), 0) AS support_share, + ROW_NUMBER() OVER (ORDER BY support DESC, value_label) AS support_rank +FROM grouped +ORDER BY support DESC, value_label; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_aca96085ea8ad08a.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_aca96085ea8ad08a.sql new file mode 100644 index 0000000000000000000000000000000000000000..52a7f3cf28dd49ac7bf4aca9eb1f6706f6e3cec2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_aca96085ea8ad08a.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_aca96085ea8ad08a +-- problem_id: v2p_n4_3f80134bc8e0290c +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "target", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_105" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_105" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "target" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ad923c1ebecd3ce9.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ad923c1ebecd3ce9.sql new file mode 100644 index 0000000000000000000000000000000000000000..b27a2b3cbe7fecef1bf47b60cb1dbeb2cd755eb0 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ad923c1ebecd3ce9.sql @@ -0,0 +1,17 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_rank_order +-- variant_semantic_role: collapsed_target_view +-- template_id: tpl_h2o_group_sum +-- query_record_id: v2q_n4_ad923c1ebecd3ce9 +-- problem_id: v2p_n4_24a79bf2ba5adf3f +-- realization_mode: agent +-- source_kind: agent +SELECT "feature_5", SUM(CAST(NULLIF("feature_8", '') AS REAL)) AS total_measure +FROM "n4" +GROUP BY "feature_5" +ORDER BY total_measure DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ada4d966a1d39d5a.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ada4d966a1d39d5a.sql new file mode 100644 index 0000000000000000000000000000000000000000..cb94c1584f6f9baa2a3788774a455895807be3a5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ada4d966a1d39d5a.sql @@ -0,0 +1,22 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_conditional_contrast +-- variant_semantic_role: collapsed_target_view +-- template_id: tpl_h2o_group_sum +-- query_record_id: v2q_n4_ada4d966a1d39d5a +-- problem_id: v2p_n4_e9d9bba3f08a5816 +-- realization_mode: agent +-- source_kind: agent +SELECT + "feature_104", + SUM(CAST(NULLIF(TRIM("feature_3"), '') AS REAL)) AS "total_measure" +FROM "n4" +WHERE NULLIF(TRIM("feature_104"), '') IS NOT NULL + AND NULLIF(TRIM("feature_3"), '') IS NOT NULL +GROUP BY "feature_104" +ORDER BY "total_measure" DESC +LIMIT 12; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_b014a3cf8be7dba8.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_b014a3cf8be7dba8.sql new file mode 100644 index 0000000000000000000000000000000000000000..ec156a3efd3babc9c6a6a1b9e7d9f66e77debcce --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_b014a3cf8be7dba8.sql @@ -0,0 +1,28 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: support_rank_profile_consistency +-- intended_facet_id: support_concentration +-- variant_semantic_role: ranked_signal_view +-- template_id: tpl_cardinality_distinct_share_profile +-- query_record_id: v2q_n4_b014a3cf8be7dba8 +-- problem_id: v2p_n4_0946bf44ecc49e53 +-- realization_mode: deterministic +-- source_kind: deterministic +WITH grouped AS ( + SELECT "feature_104" AS value_label, COUNT(*) AS support + FROM "n4" + GROUP BY "feature_104" +), ranked AS ( + SELECT + value_label, + support, + CAST(support AS FLOAT) / NULLIF(SUM(support) OVER (), 0) AS support_share, + SUM(support) OVER (ORDER BY support DESC, value_label ROWS UNBOUNDED PRECEDING) AS cumulative_support + FROM grouped +) +SELECT * +FROM ranked +ORDER BY support DESC, value_label; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_b389d624f5b615a9.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_b389d624f5b615a9.sql new file mode 100644 index 0000000000000000000000000000000000000000..4c67e206c44a628bfa20012de301046884b32cf6 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_b389d624f5b615a9.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_rate_by_subgroup +-- variant_semantic_role: missing_rate_by_subgroup +-- template_id: tpl_missing_rate_by_subgroup +-- query_record_id: v2q_n4_b389d624f5b615a9 +-- problem_id: v2p_n4_014284d4cd1dcae7 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_104", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_115" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_115" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_104" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_b999cd6fdf87af58.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_b999cd6fdf87af58.sql new file mode 100644 index 0000000000000000000000000000000000000000..e079e04d3da1d17494f6a411266c237e3b3a2320 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_b999cd6fdf87af58.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_b999cd6fdf87af58 +-- problem_id: v2p_n4_e1b22e3de98fd505 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_17", + COUNT(*) AS support, + AVG("feature_1") AS avg_response +FROM "n4" +GROUP BY "feature_17" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_bd5e82c71440b4d6.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_bd5e82c71440b4d6.sql new file mode 100644 index 0000000000000000000000000000000000000000..8d01eb81dce15fc326ebbfafb78760ea41b25376 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_bd5e82c71440b4d6.sql @@ -0,0 +1,25 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: support_rank_profile_consistency +-- intended_facet_id: support_concentration +-- variant_semantic_role: count_distribution +-- template_id: tpl_cardinality_support_rank_profile +-- query_record_id: v2q_n4_bd5e82c71440b4d6 +-- problem_id: v2p_n4_bca3acf79beb03fb +-- realization_mode: deterministic +-- source_kind: deterministic +WITH grouped AS ( + SELECT "feature_5" AS value_label, COUNT(*) AS support + FROM "n4" + GROUP BY "feature_5" +) +SELECT + value_label, + support, + CAST(support AS FLOAT) / NULLIF(SUM(support) OVER (), 0) AS support_share, + ROW_NUMBER() OVER (ORDER BY support DESC, value_label) AS support_rank +FROM grouped +ORDER BY support DESC, value_label; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_be03c362d23cbbfe.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_be03c362d23cbbfe.sql new file mode 100644 index 0000000000000000000000000000000000000000..288946dbb4016c765582fc14331b39ffd8eb5108 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_be03c362d23cbbfe.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_rate_by_subgroup +-- variant_semantic_role: missing_rate_by_subgroup +-- template_id: tpl_missing_rate_by_subgroup +-- query_record_id: v2q_n4_be03c362d23cbbfe +-- problem_id: v2p_n4_b568819531df9cb5 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_76", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_105" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_105" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_76" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_c40b8f0b620a2aba.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_c40b8f0b620a2aba.sql new file mode 100644 index 0000000000000000000000000000000000000000..0c8917603c5cd84ea9b9a7f71dc4aae8e3d77af2 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_c40b8f0b620a2aba.sql @@ -0,0 +1,17 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_conditional_contrast +-- variant_semantic_role: collapsed_target_view +-- template_id: tpl_h2o_group_sum +-- query_record_id: v2q_n4_c40b8f0b620a2aba +-- problem_id: v2p_n4_30862c39341aeb45 +-- realization_mode: agent +-- source_kind: agent +SELECT "feature_125", SUM(CAST(NULLIF("feature_7", '') AS REAL)) AS total_measure +FROM "n4" +GROUP BY "feature_125" +ORDER BY total_measure DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ca339ee53f7f5f3c.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ca339ee53f7f5f3c.sql new file mode 100644 index 0000000000000000000000000000000000000000..1817afe4630f2a6bc2abf7d2bc4c146ebd3897f5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ca339ee53f7f5f3c.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_ca339ee53f7f5f3c +-- problem_id: v2p_n4_2a604d28fba8ed6e +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_31" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_31" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_cb54ff8cfd41bad1.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_cb54ff8cfd41bad1.sql new file mode 100644 index 0000000000000000000000000000000000000000..bc2b5eae53ba49ccbf8fd4034dea7e970df2d327 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_cb54ff8cfd41bad1.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_cb54ff8cfd41bad1 +-- problem_id: v2p_n4_64d84627b2aaeed2 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_111" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_111" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_d39c8202608b2eb8.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_d39c8202608b2eb8.sql new file mode 100644 index 0000000000000000000000000000000000000000..0aa3679fe0b7041475d69de379f1dacaceefd8df --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_d39c8202608b2eb8.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_d39c8202608b2eb8 +-- problem_id: v2p_n4_0f256ec9ac0c3dc7 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_124" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_124" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_d761602dabae8a7b.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_d761602dabae8a7b.sql new file mode 100644 index 0000000000000000000000000000000000000000..f257ee388c632116ee5f6cb63d271caef24bd510 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_d761602dabae8a7b.sql @@ -0,0 +1,18 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: marginal_missing_rate_consistency +-- intended_facet_id: missing_indicator_distribution +-- variant_semantic_role: missing_indicator_view +-- template_id: tpl_missing_marginal_rate_profile +-- query_record_id: v2q_n4_d761602dabae8a7b +-- problem_id: v2p_n4_42ff26b2c013ae5b +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_109" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_109" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4"; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_d93eade9d0923fd3.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_d93eade9d0923fd3.sql new file mode 100644 index 0000000000000000000000000000000000000000..c3371c4e5547d8db1d6cf4220b66f798f4326fbd --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_d93eade9d0923fd3.sql @@ -0,0 +1,19 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: subgroup_structure +-- canonical_subitem_id: internal_profile_stability +-- intended_facet_id: subgroup_distribution_shift +-- variant_semantic_role: collapsed_target_view +-- template_id: tpl_h2o_group_sum +-- query_record_id: v2q_n4_d93eade9d0923fd3 +-- problem_id: v2p_n4_b000e82d43722a73 +-- realization_mode: agent +-- source_kind: agent +SELECT + "feature_104", + SUM(CAST(NULLIF("feature_3", '') AS REAL)) AS total_measure +FROM "n4" +GROUP BY "feature_104" +ORDER BY total_measure DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_dc2316ab18dc89ff.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_dc2316ab18dc89ff.sql new file mode 100644 index 0000000000000000000000000000000000000000..ebad2683f19669799ae43a668cf6abacf9b19490 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_dc2316ab18dc89ff.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_dc2316ab18dc89ff +-- problem_id: v2p_n4_f6cf7bb8b08db32b +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "target", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_107" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_107" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "target" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ddf55a592149b178.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ddf55a592149b178.sql new file mode 100644 index 0000000000000000000000000000000000000000..93d009d36e4d74a516d75af4c18118ea77867ee5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_ddf55a592149b178.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_ddf55a592149b178 +-- problem_id: v2p_n4_f932f2512388a2f5 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_4", + COUNT(*) AS support, + AVG("feature_5") AS avg_response +FROM "n4" +GROUP BY "feature_4" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_df22a958ec64486d.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_df22a958ec64486d.sql new file mode 100644 index 0000000000000000000000000000000000000000..1528d6cb67ff8dee3ed5065800c740838e72229a --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_df22a958ec64486d.sql @@ -0,0 +1,25 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: support_rank_profile_consistency +-- intended_facet_id: value_imbalance_profile +-- variant_semantic_role: count_distribution +-- template_id: tpl_cardinality_support_rank_profile +-- query_record_id: v2q_n4_df22a958ec64486d +-- problem_id: v2p_n4_6a944b5d4c23f28c +-- realization_mode: deterministic +-- source_kind: deterministic +WITH grouped AS ( + SELECT "feature_125" AS value_label, COUNT(*) AS support + FROM "n4" + GROUP BY "feature_125" +) +SELECT + value_label, + support, + CAST(support AS FLOAT) / NULLIF(SUM(support) OVER (), 0) AS support_share, + ROW_NUMBER() OVER (ORDER BY support DESC, value_label) AS support_rank +FROM grouped +ORDER BY support DESC, value_label; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_e071ebc4a2844b17.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_e071ebc4a2844b17.sql new file mode 100644 index 0000000000000000000000000000000000000000..9757306ba886512bc5479e74830ba574dd5e8f98 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_e071ebc4a2844b17.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_rate_by_subgroup +-- variant_semantic_role: missing_rate_by_subgroup +-- template_id: tpl_missing_rate_by_subgroup +-- query_record_id: v2q_n4_e071ebc4a2844b17 +-- problem_id: v2p_n4_035ec5703beb0243 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_5", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_31" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_31" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_5" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_e16d9ed58c568cd8.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_e16d9ed58c568cd8.sql new file mode 100644 index 0000000000000000000000000000000000000000..e939970ad006122630e1745b8b374bbf161c8e9b --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_e16d9ed58c568cd8.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_rate_by_subgroup +-- variant_semantic_role: missing_rate_by_subgroup +-- template_id: tpl_missing_rate_by_subgroup +-- query_record_id: v2q_n4_e16d9ed58c568cd8 +-- problem_id: v2p_n4_b95da9797d4d4361 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_76", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_107" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_107" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_76" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_e6f16efaf981e8a9.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_e6f16efaf981e8a9.sql new file mode 100644 index 0000000000000000000000000000000000000000..b46ebabc6a038f4a481aeeb9f588d81cc9bda0dc --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_e6f16efaf981e8a9.sql @@ -0,0 +1,25 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: support_rank_profile_consistency +-- intended_facet_id: value_imbalance_profile +-- variant_semantic_role: count_distribution +-- template_id: tpl_cardinality_support_rank_profile +-- query_record_id: v2q_n4_e6f16efaf981e8a9 +-- problem_id: v2p_n4_87014c8c4355106f +-- realization_mode: deterministic +-- source_kind: deterministic +WITH grouped AS ( + SELECT "feature_116" AS value_label, COUNT(*) AS support + FROM "n4" + GROUP BY "feature_116" +) +SELECT + value_label, + support, + CAST(support AS FLOAT) / NULLIF(SUM(support) OVER (), 0) AS support_share, + ROW_NUMBER() OVER (ORDER BY support DESC, value_label) AS support_rank +FROM grouped +ORDER BY support DESC, value_label; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_f03c22ec1c872e8c.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_f03c22ec1c872e8c.sql new file mode 100644 index 0000000000000000000000000000000000000000..8a468a02779692fc13c35e5024fc2b3d65cac5a5 --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_f03c22ec1c872e8c.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_f03c22ec1c872e8c +-- problem_id: v2p_n4_2f4e4f6a07bb50c3 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_76", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_115" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_115" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_76" +ORDER BY missing_rate DESC, total_rows DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_f6c19602c16821bc.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_f6c19602c16821bc.sql new file mode 100644 index 0000000000000000000000000000000000000000..cef9ccf43b99c7a8b7e8af545e872668b4e04f2f --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_f6c19602c16821bc.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: cardinality_structure +-- canonical_subitem_id: high_cardinality_response_stability +-- intended_facet_id: target_cardinality_cross_section +-- variant_semantic_role: focused_target_view +-- template_id: tpl_cardinality_high_card_response_stability +-- query_record_id: v2q_n4_f6c19602c16821bc +-- problem_id: v2p_n4_5e7a8b4f7b429670 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_20", + COUNT(*) AS support, + AVG("feature_2") AS avg_response +FROM "n4" +GROUP BY "feature_20" +HAVING COUNT(*) >= 5.0 +ORDER BY support DESC, avg_response DESC; diff --git a/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_fbc303b80956539a.sql b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_fbc303b80956539a.sql new file mode 100644 index 0000000000000000000000000000000000000000..1a1b68e9494d163f53991724cd552516d4fc48fb --- /dev/null +++ b/Query/sql/v2/runs/v2_cli_20260502_081223_e/n4/sql/v2q_n4_fbc303b80956539a.sql @@ -0,0 +1,21 @@ +-- sql_source_version: v2 +-- sql_source_label: v2_current +-- sql_source_run_id: v2_cli_20260502_081223_e +-- sql_source_dataset_id: n4 +-- family_id: missingness_structure +-- canonical_subitem_id: co_missingness_pattern_consistency +-- intended_facet_id: missing_target_interaction +-- variant_semantic_role: missing_target_interaction +-- template_id: tpl_missing_target_interaction +-- query_record_id: v2q_n4_fbc303b80956539a +-- problem_id: v2p_n4_7995a963c5c98cc0 +-- realization_mode: deterministic +-- source_kind: deterministic +SELECT + "feature_76", + COUNT(*) AS total_rows, + SUM(CASE WHEN "feature_122" IS NULL THEN 1 ELSE 0 END) AS missing_rows, + AVG(CASE WHEN "feature_122" IS NULL THEN 1.0 ELSE 0.0 END) AS missing_rate +FROM "n4" +GROUP BY "feature_76" +ORDER BY missing_rate DESC, total_rows DESC;