diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/analysis_report.md b/evaluation/query_family/missingness/strict_pairwise_diagnostic/analysis_report.md new file mode 100644 index 0000000000000000000000000000000000000000..597ad658bb403c5555ea35a4893837b25fbc4fe5 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/analysis_report.md @@ -0,0 +1,12 @@ +# Strict Pairwise Co-Missing Diagnostic + +- Canonical missingness family score keeps the broader profile-only structured-missingness view. +- This auxiliary diagnostic restricts the second axis to missing-only column pairs. +- Primary asset panels reviewed: `80` +- Strict-overlap panels: `63` +- Strict-overlap datasets: `10` + +## Status counts + +- `ok`: `63` +- `not_applicable_fewer_than_2_missing_targets`: `17` diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/data/strict_pairwise_coverage_summary.csv b/evaluation/query_family/missingness/strict_pairwise_diagnostic/data/strict_pairwise_coverage_summary.csv new file mode 100644 index 0000000000000000000000000000000000000000..c05b42a1c3d4ef9426ee3b82ba4b45846ecc9ca2 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/data/strict_pairwise_coverage_summary.csv @@ -0,0 +1,13 @@ +dataset_id,model_panel_count,strict_applicable_panel_count,active_missing_target_count,strict_pair_count +c5,10,10,4,6 +c15,4,4,23,253 +c16,5,5,9,36 +c17,6,6,3,3 +c18,3,3,6,15 +c19,6,0,1,0 +m7,11,0,1,0 +m9,8,8,7,21 +m12,7,7,2,1 +n4,9,9,24,276 +n8,7,7,179,15931 +n18,4,4,168,14028 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/data/strict_pairwise_model_summary.csv b/evaluation/query_family/missingness/strict_pairwise_diagnostic/data/strict_pairwise_model_summary.csv new file mode 100644 index 0000000000000000000000000000000000000000..b11b4f36706055eb5a6c9dda85225891fae2f780 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/data/strict_pairwise_model_summary.csv @@ -0,0 +1,11 @@ +model_id,model_label,dataset_count_overlap,panel_count_overlap,broad_profile_score_mean,strict_pairwise_score_mean,delta_strict_minus_broad_mean +arf,ARF,10,10,0.833368,0.832696,-0.000671 +bayesnet,BayesNet,10,10,0.789654,0.800297,0.010643 +ctgan,CTGAN,8,8,0.773566,0.770931,-0.002635 +realtabformer,RealTabFormer,9,9,0.967452,0.972457,0.005005 +tabbyflow,TabbyFlow,4,4,0.576842,0.635821,0.058979 +tabddpm,TabDDPM,3,3,0.612022,0.677081,0.065059 +tabdiff,TabDiff,1,1,0.810198,0.958476,0.148278 +tabpfgen,TabPFGen,4,4,0.668125,0.686325,0.0182 +tabsyn,TabSyn,5,5,0.630372,0.705606,0.075234 +tvae,TVAE,9,9,0.748776,0.824099,0.075323 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/data/strict_pairwise_panel_scores.csv b/evaluation/query_family/missingness/strict_pairwise_diagnostic/data/strict_pairwise_panel_scores.csv new file mode 100644 index 0000000000000000000000000000000000000000..4eeb2e9d9aefe526909dc202410e8eba8b834650 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/data/strict_pairwise_panel_scores.csv @@ -0,0 +1,81 @@ +dataset_id,dataset_prefix,model_id,model_label,current_broad_profile_score,current_strength_score,strict_status,strict_pairwise_score,strict_pair_count,active_missing_target_count,delta_strict_minus_broad +c5,c,arf,ARF,0.995742,0.982734,ok,0.990018,6,4,-0.005724000000000062 +c5,c,bayesnet,BayesNet,0.963464,0.877172,ok,0.943166,6,4,-0.020298000000000038 +c5,c,ctgan,CTGAN,0.954606,0.872582,ok,0.921428,6,4,-0.03317799999999993 +c5,c,realtabformer,RealTabFormer,0.995521,0.99189,ok,0.997049,6,4,0.0015279999999999738 +c5,c,tabbyflow,TabbyFlow,0.810198,0.786658,ok,0.991714,6,4,0.181516 +c5,c,tabddpm,TabDDPM,0.810198,0.786658,ok,0.991882,6,4,0.18168400000000007 +c5,c,tabdiff,TabDiff,0.810198,0.786658,ok,0.958476,6,4,0.14827800000000002 +c5,c,tabpfgen,TabPFGen,0.810198,0.786658,ok,0.814746,6,4,0.0045479999999999965 +c5,c,tabsyn,TabSyn,0.810198,0.786658,ok,0.997361,6,4,0.18716300000000008 +c5,c,tvae,TVAE,0.974922,0.968025,ok,0.98821,6,4,0.013288000000000078 +c15,c,arf,ARF,0.991788,0.999986,ok,0.994392,253,23,0.0026040000000000507 +c15,c,bayesnet,BayesNet,0.969949,0.999989,ok,0.978964,253,23,0.009014999999999995 +c15,c,realtabformer,RealTabFormer,0.960776,0.999972,ok,0.972579,253,23,0.011803000000000008 +c15,c,tvae,TVAE,0.627105,0.844879,ok,0.709849,253,23,0.08274399999999993 +c16,c,arf,ARF,0.984938,0.97513,ok,0.981095,36,9,-0.00384299999999993 +c16,c,bayesnet,BayesNet,0.742628,0.967498,ok,0.808952,36,9,0.06632400000000005 +c16,c,ctgan,CTGAN,0.9428,0.970629,ok,0.953994,36,9,0.011194000000000037 +c16,c,realtabformer,RealTabFormer,0.99624,0.998366,ok,0.998222,36,9,0.0019820000000000393 +c16,c,tvae,TVAE,0.868727,0.887354,ok,0.907043,36,9,0.03831600000000002 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+c19,c,realtabformer,RealTabFormer,0.869641,0.922418,not_applicable_fewer_than_2_missing_targets,,0,1, +c19,c,tabpfgen,TabPFGen,0.985958,0.991948,not_applicable_fewer_than_2_missing_targets,,0,1, +c19,c,tvae,TVAE,0.990097,0.996318,not_applicable_fewer_than_2_missing_targets,,0,1, +m7,m,arf,ARF,0.960127,0.991897,not_applicable_fewer_than_2_missing_targets,,0,1, +m7,m,bayesnet,BayesNet,0.960127,0.991897,not_applicable_fewer_than_2_missing_targets,,0,1, +m7,m,ctgan,CTGAN,0.960127,0.991897,not_applicable_fewer_than_2_missing_targets,,0,1, +m7,m,forestdiffusion,ForestDiffusion,0.960127,0.991897,not_applicable_fewer_than_2_missing_targets,,0,1, +m7,m,realtabformer,RealTabFormer,0.99396,0.997494,not_applicable_fewer_than_2_missing_targets,,0,1, +m7,m,tabbyflow,TabbyFlow,0.960127,0.991897,not_applicable_fewer_than_2_missing_targets,,0,1, +m7,m,tabddpm,TabDDPM,0.960127,0.991897,not_applicable_fewer_than_2_missing_targets,,0,1, +m7,m,tabdiff,TabDiff,0.960127,0.991897,not_applicable_fewer_than_2_missing_targets,,0,1, +m7,m,tabpfgen,TabPFGen,0.960127,0.991897,not_applicable_fewer_than_2_missing_targets,,0,1, +m7,m,tabsyn,TabSyn,0.960127,0.991897,not_applicable_fewer_than_2_missing_targets,,0,1, +m7,m,tvae,TVAE,0.599908,0.88798,not_applicable_fewer_than_2_missing_targets,,0,1, +m9,m,arf,ARF,0.989308,0.979731,ok,0.987087,21,7,-0.0022209999999999175 +m9,m,bayesnet,BayesNet,0.99236,0.996995,ok,0.995395,21,7,0.00303500000000001 +m9,m,ctgan,CTGAN,0.962693,0.978497,ok,0.973285,21,7,0.010591999999999935 +m9,m,realtabformer,RealTabFormer,0.992816,0.996606,ok,0.994564,21,7,0.0017479999999999718 +m9,m,tabddpm,TabDDPM,0.844494,0.948405,ok,0.864584,21,7,0.020090000000000052 +m9,m,tabpfgen,TabPFGen,0.844494,0.948405,ok,0.874435,21,7,0.029940999999999995 +m9,m,tabsyn,TabSyn,0.844494,0.948405,ok,0.993593,21,7,0.14909899999999998 +m9,m,tvae,TVAE,0.954564,0.956749,ok,0.972164,21,7,0.01760000000000006 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b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_coverage_bars_appendix.svg @@ -0,0 +1,1510 @@ + + + + + + + + 2026-05-05T09:21:03.882409 + image/svg+xml + + + Matplotlib v3.9.2, https://matplotlib.org/ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+\documentclass[border=4pt]{standalone} +\usepackage{graphicx} +\begin{document} +\textbf{Strict pairwise coverage shrinkage}\\[0.5em] +\includegraphics[width=\textwidth]{strict_pairwise_coverage_bars_appendix.pdf} +\end{document} diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_panel_scatter_appendix.pdf b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_panel_scatter_appendix.pdf new file mode 100644 index 0000000000000000000000000000000000000000..973893904fa0a41975c453d6278291551796a7ce --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_panel_scatter_appendix.pdf @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:19db41de3eecdc28a857624928d65a217fb38af8d003e1086a1c1f9f3f42bd74 +size 14884 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_panel_scatter_appendix.png b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_panel_scatter_appendix.png new file mode 100644 index 0000000000000000000000000000000000000000..551dd2b24909e98df87f6e031e5877f41c1d215e --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_panel_scatter_appendix.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9c3111b5ae35013c260dfb3efb90cde195aa83b48de6fb82cc5a2f968b28e0e7 +size 105924 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_panel_scatter_appendix.svg b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_panel_scatter_appendix.svg new file mode 100644 index 0000000000000000000000000000000000000000..ae56a255e0966730def970f5ead56d4aaa0e3163 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_panel_scatter_appendix.svg @@ -0,0 +1,1368 @@ + + + + + + + + 2026-05-05T09:21:03.645158 + image/svg+xml + + + Matplotlib v3.9.2, https://matplotlib.org/ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+\textbf{Strict pairwise overlap scatter}\\[0.5em] +\includegraphics[width=\textwidth]{strict_pairwise_panel_scatter_appendix.pdf} +\end{document} diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_profile_distribution_main.pdf b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_profile_distribution_main.pdf new file mode 100644 index 0000000000000000000000000000000000000000..811113130af03f9ac5ae1fcbe568b81be819fa88 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_profile_distribution_main.pdf @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c4fdf917d06a6627ae6a8e48942934c1268ee46d471542d8dcc15e260db81ef7 +size 20306 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_profile_distribution_main.png 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b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_profile_distribution_main.svg @@ -0,0 +1,2266 @@ + + + + + + + + 2026-05-05T09:21:04.242710 + image/svg+xml + + + Matplotlib v3.9.2, https://matplotlib.org/ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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pairwise distribution}\\[0.5em] +\includegraphics[width=\textwidth]{strict_pairwise_profile_distribution_main.pdf} +\end{document} diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.pdf b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.pdf new file mode 100644 index 0000000000000000000000000000000000000000..0455d5f0aebf0acb7c4f042402b18174e3a6441c --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.pdf @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:562202916f4b8346253b0713accb8bdfb445ce7ead5126df32c95fbe55977151 +size 19506 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.png b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.png new file mode 100644 index 0000000000000000000000000000000000000000..7aec0f616629c5364eb97d62501da08c19da6bbc --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b532f091719755273563393bd2069735af04415eaaad64bafe24a3e1a6be7d9f +size 96019 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.svg b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.svg new file mode 100644 index 0000000000000000000000000000000000000000..e4c036f187bd1205940983dfc6bb95cb529159d9 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.svg @@ -0,0 +1,1919 @@ + + + + + + + + 2026-05-05T09:21:03.427277 + image/svg+xml + + + Matplotlib v3.9.2, https://matplotlib.org/ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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a/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.tex b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.tex new file mode 100644 index 0000000000000000000000000000000000000000..224fc0a29544bc6ca283ee31171a2868a8e53fa7 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/figures/strict_pairwise_vs_broad_model_dumbbell_main.tex @@ -0,0 +1,6 @@ +\documentclass[border=4pt]{standalone} +\usepackage{graphicx} +\begin{document} +\textbf{Strict pairwise vs broad co-missingness}\\[0.5em] +\includegraphics[width=\textwidth]{strict_pairwise_vs_broad_model_dumbbell_main.pdf} +\end{document} diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/README.md b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/README.md new file mode 100644 index 0000000000000000000000000000000000000000..51e15843aaa9dca9a1610772eb7d0b9bfad732e4 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/README.md @@ -0,0 +1,46 @@ +# Strict Pairwise Co-Missing Diagnostic + +Auxiliary paper-facing bundle that restricts co-missingness to missing-only column pairs and reports the resulting coverage shrinkage. + +Primary paper-facing files: + +- `strict_pairwise_vs_broad_model_dumbbell_main.pdf` +- `strict_pairwise_vs_broad_model_dumbbell_main.png` +- `strict_pairwise_vs_broad_model_dumbbell_main.tex` +- `strict_pairwise_profile_distribution_main.pdf` +- `strict_pairwise_profile_distribution_main.png` +- `strict_pairwise_profile_distribution_main.tex` +- `strict_pairwise_panel_scatter_appendix.pdf` +- `strict_pairwise_panel_scatter_appendix.png` +- `strict_pairwise_panel_scatter_appendix.tex` +- `strict_pairwise_coverage_bars_appendix.pdf` +- `strict_pairwise_coverage_bars_appendix.png` +- `strict_pairwise_coverage_bars_appendix.tex` + +Must-do bundle (`must_do/`): + +- `must_do/strict_pairwise_vs_broad_model_dumbbell_main.pdf` +- `must_do/strict_pairwise_vs_broad_model_dumbbell_main.png` +- `must_do/strict_pairwise_vs_broad_model_dumbbell_main.svg` +- `must_do/strict_pairwise_vs_broad_model_dumbbell_main.tex` +- `must_do/strict_pairwise_profile_distribution_main.pdf` +- `must_do/strict_pairwise_profile_distribution_main.png` +- `must_do/strict_pairwise_profile_distribution_main.svg` +- `must_do/strict_pairwise_profile_distribution_main.tex` +- `must_do/strict_pairwise_panel_scatter_appendix.pdf` +- `must_do/strict_pairwise_panel_scatter_appendix.png` +- `must_do/strict_pairwise_panel_scatter_appendix.svg` +- `must_do/strict_pairwise_panel_scatter_appendix.tex` +- `must_do/strict_pairwise_coverage_bars_appendix.pdf` +- `must_do/strict_pairwise_coverage_bars_appendix.png` +- `must_do/strict_pairwise_coverage_bars_appendix.svg` +- `must_do/strict_pairwise_coverage_bars_appendix.tex` + +Support files: + +- `strict_pairwise_panel_scores.csv` +- `strict_pairwise_model_summary.csv` +- `strict_pairwise_coverage_summary.csv` +- `analysis_report.md` +- `paper_caption.txt` +- `paper_paragraphs.md` diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/analysis_report.md b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/analysis_report.md new file mode 100644 index 0000000000000000000000000000000000000000..597ad658bb403c5555ea35a4893837b25fbc4fe5 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/analysis_report.md @@ -0,0 +1,12 @@ +# Strict Pairwise Co-Missing Diagnostic + +- Canonical missingness family score keeps the broader profile-only structured-missingness view. +- This auxiliary diagnostic restricts the second axis to missing-only column pairs. +- Primary asset panels reviewed: `80` +- Strict-overlap panels: `63` +- Strict-overlap datasets: `10` + +## Status counts + +- `ok`: `63` +- `not_applicable_fewer_than_2_missing_targets`: `17` diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_coverage_bars_appendix.pdf b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_coverage_bars_appendix.pdf new file mode 100644 index 0000000000000000000000000000000000000000..af1ce0ed84cc253f52db783601d15f9ad5d19d8f --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_coverage_bars_appendix.pdf @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2f2cbdaa1271de4671979c7561576826de20e9406abf1fe2102649e0be4de876 +size 15503 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_coverage_bars_appendix.png b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_coverage_bars_appendix.png new file mode 100644 index 0000000000000000000000000000000000000000..a1c275eaae0752587bf08feb06ad2744fa53a084 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_coverage_bars_appendix.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:77564bcf58a794e8f697dcd073c95a4389305657d8b1c6bf3cb8d964bd4f84ae +size 69597 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_coverage_bars_appendix.svg b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_coverage_bars_appendix.svg new file mode 100644 index 0000000000000000000000000000000000000000..da1a479ee9758e1549f0f185bfc1a9a0e03f0e43 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_coverage_bars_appendix.svg @@ -0,0 +1,1510 @@ + + + + + + + + 2026-05-05T09:21:03.882409 + image/svg+xml + + + Matplotlib v3.9.2, https://matplotlib.org/ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+\documentclass[border=4pt]{standalone} +\usepackage{graphicx} +\begin{document} +\textbf{Strict pairwise coverage shrinkage}\\[0.5em] +\includegraphics[width=\textwidth]{strict_pairwise_coverage_bars_appendix.pdf} +\end{document} diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_panel_scatter_appendix.pdf b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_panel_scatter_appendix.pdf new file mode 100644 index 0000000000000000000000000000000000000000..973893904fa0a41975c453d6278291551796a7ce --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_panel_scatter_appendix.pdf @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:19db41de3eecdc28a857624928d65a217fb38af8d003e1086a1c1f9f3f42bd74 +size 14884 diff --git 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0000000000000000000000000000000000000000..44879ecd0c817353983d85f04a2844b2fb210061 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_panel_scatter_appendix.tex @@ -0,0 +1,6 @@ +\documentclass[border=4pt]{standalone} +\usepackage{graphicx} +\begin{document} +\textbf{Strict pairwise overlap scatter}\\[0.5em] +\includegraphics[width=\textwidth]{strict_pairwise_panel_scatter_appendix.pdf} +\end{document} diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_profile_distribution_main.pdf b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_profile_distribution_main.pdf new file mode 100644 index 0000000000000000000000000000000000000000..811113130af03f9ac5ae1fcbe568b81be819fa88 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_profile_distribution_main.pdf @@ -0,0 +1,3 @@ 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/dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_profile_distribution_main.tex @@ -0,0 +1,6 @@ +\documentclass[border=4pt]{standalone} +\usepackage{graphicx} +\begin{document} +\textbf{Profile-only broad vs strict pairwise distribution}\\[0.5em] +\includegraphics[width=\textwidth]{strict_pairwise_profile_distribution_main.pdf} +\end{document} diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_vs_broad_model_dumbbell_main.pdf b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_vs_broad_model_dumbbell_main.pdf new file mode 100644 index 0000000000000000000000000000000000000000..0455d5f0aebf0acb7c4f042402b18174e3a6441c --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_vs_broad_model_dumbbell_main.pdf @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:562202916f4b8346253b0713accb8bdfb445ce7ead5126df32c95fbe55977151 +size 19506 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_vs_broad_model_dumbbell_main.png b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_vs_broad_model_dumbbell_main.png new file mode 100644 index 0000000000000000000000000000000000000000..7aec0f616629c5364eb97d62501da08c19da6bbc --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_vs_broad_model_dumbbell_main.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b532f091719755273563393bd2069735af04415eaaad64bafe24a3e1a6be7d9f +size 96019 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/must_do/strict_pairwise_vs_broad_model_dumbbell_main.svg 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a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/paper_caption.txt b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/paper_caption.txt new file mode 100644 index 0000000000000000000000000000000000000000..704d684636f0959cb70d1354cb0f91c2e4f9d431 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/paper_caption.txt @@ -0,0 +1 @@ +Auxiliary missingness diagnostic comparing the broad profile-only co-missing score against a stricter version that only retains pairs of columns that both exhibit meaningful native missingness. Coverage bars show that the stricter definition is more selective because datasets with only one active missing target column become inapplicable. \ No newline at end of file diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/paper_paragraphs.md b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/paper_paragraphs.md new file mode 100644 index 0000000000000000000000000000000000000000..00385dab937b6308793a19615f5a345f1ede7da9 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/paper_paragraphs.md @@ -0,0 +1,3 @@ +The canonical missingness family intentionally keeps a broad structured-missingness view, where the missingness of one target column can depend on the states of any other usable column. + +As a sensitivity analysis, we also evaluate a strict pairwise variant that only retains pairs of columns that both carry meaningful native missingness. Differences between the two reveal whether a model preserves general conditional missingness structure more easily than direct co-missing behavior among missing columns themselves. diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_bars_appendix.pdf b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_bars_appendix.pdf new file mode 100644 index 0000000000000000000000000000000000000000..af1ce0ed84cc253f52db783601d15f9ad5d19d8f --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_bars_appendix.pdf @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2f2cbdaa1271de4671979c7561576826de20e9406abf1fe2102649e0be4de876 +size 15503 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_bars_appendix.png b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_bars_appendix.png new file mode 100644 index 0000000000000000000000000000000000000000..a1c275eaae0752587bf08feb06ad2744fa53a084 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_bars_appendix.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:77564bcf58a794e8f697dcd073c95a4389305657d8b1c6bf3cb8d964bd4f84ae +size 69597 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_bars_appendix.svg b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_bars_appendix.svg new file mode 100644 index 0000000000000000000000000000000000000000..da1a479ee9758e1549f0f185bfc1a9a0e03f0e43 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_bars_appendix.svg @@ -0,0 +1,1510 @@ + + + + + + + + 2026-05-05T09:21:03.882409 + image/svg+xml + + + Matplotlib v3.9.2, https://matplotlib.org/ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+\includegraphics[width=\textwidth]{strict_pairwise_coverage_bars_appendix.pdf} +\end{document} diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_summary.csv b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_summary.csv new file mode 100644 index 0000000000000000000000000000000000000000..c05b42a1c3d4ef9426ee3b82ba4b45846ecc9ca2 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_coverage_summary.csv @@ -0,0 +1,13 @@ +dataset_id,model_panel_count,strict_applicable_panel_count,active_missing_target_count,strict_pair_count +c5,10,10,4,6 +c15,4,4,23,253 +c16,5,5,9,36 +c17,6,6,3,3 +c18,3,3,6,15 +c19,6,0,1,0 +m7,11,0,1,0 +m9,8,8,7,21 +m12,7,7,2,1 +n4,9,9,24,276 +n8,7,7,179,15931 +n18,4,4,168,14028 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_model_summary.csv b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_model_summary.csv new file mode 100644 index 0000000000000000000000000000000000000000..b11b4f36706055eb5a6c9dda85225891fae2f780 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_model_summary.csv @@ -0,0 +1,11 @@ +model_id,model_label,dataset_count_overlap,panel_count_overlap,broad_profile_score_mean,strict_pairwise_score_mean,delta_strict_minus_broad_mean +arf,ARF,10,10,0.833368,0.832696,-0.000671 +bayesnet,BayesNet,10,10,0.789654,0.800297,0.010643 +ctgan,CTGAN,8,8,0.773566,0.770931,-0.002635 +realtabformer,RealTabFormer,9,9,0.967452,0.972457,0.005005 +tabbyflow,TabbyFlow,4,4,0.576842,0.635821,0.058979 +tabddpm,TabDDPM,3,3,0.612022,0.677081,0.065059 +tabdiff,TabDiff,1,1,0.810198,0.958476,0.148278 +tabpfgen,TabPFGen,4,4,0.668125,0.686325,0.0182 +tabsyn,TabSyn,5,5,0.630372,0.705606,0.075234 +tvae,TVAE,9,9,0.748776,0.824099,0.075323 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_panel_scatter_appendix.pdf b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_panel_scatter_appendix.pdf new file mode 100644 index 0000000000000000000000000000000000000000..973893904fa0a41975c453d6278291551796a7ce --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_panel_scatter_appendix.pdf @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:19db41de3eecdc28a857624928d65a217fb38af8d003e1086a1c1f9f3f42bd74 +size 14884 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_panel_scatter_appendix.png b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_panel_scatter_appendix.png new file mode 100644 index 0000000000000000000000000000000000000000..551dd2b24909e98df87f6e031e5877f41c1d215e --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_panel_scatter_appendix.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9c3111b5ae35013c260dfb3efb90cde195aa83b48de6fb82cc5a2f968b28e0e7 +size 105924 diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_panel_scatter_appendix.svg b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_panel_scatter_appendix.svg new file mode 100644 index 0000000000000000000000000000000000000000..ae56a255e0966730def970f5ead56d4aaa0e3163 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_panel_scatter_appendix.svg @@ -0,0 +1,1368 @@ + + + + + + + + 2026-05-05T09:21:03.645158 + image/svg+xml + + + Matplotlib v3.9.2, https://matplotlib.org/ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_panel_scores.csv new file mode 100644 index 0000000000000000000000000000000000000000..4eeb2e9d9aefe526909dc202410e8eba8b834650 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_panel_scores.csv @@ -0,0 +1,81 @@ +dataset_id,dataset_prefix,model_id,model_label,current_broad_profile_score,current_strength_score,strict_status,strict_pairwise_score,strict_pair_count,active_missing_target_count,delta_strict_minus_broad +c5,c,arf,ARF,0.995742,0.982734,ok,0.990018,6,4,-0.005724000000000062 +c5,c,bayesnet,BayesNet,0.963464,0.877172,ok,0.943166,6,4,-0.020298000000000038 +c5,c,ctgan,CTGAN,0.954606,0.872582,ok,0.921428,6,4,-0.03317799999999993 +c5,c,realtabformer,RealTabFormer,0.995521,0.99189,ok,0.997049,6,4,0.0015279999999999738 +c5,c,tabbyflow,TabbyFlow,0.810198,0.786658,ok,0.991714,6,4,0.181516 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+\documentclass[border=4pt]{standalone} +\usepackage{graphicx} +\begin{document} +\textbf{Profile-only broad vs strict pairwise distribution}\\[0.5em] +\includegraphics[width=\textwidth]{strict_pairwise_profile_distribution_main.pdf} +\end{document} diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_vs_broad_model_dumbbell_main.pdf b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_vs_broad_model_dumbbell_main.pdf new file mode 100644 index 0000000000000000000000000000000000000000..0455d5f0aebf0acb7c4f042402b18174e3a6441c --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_vs_broad_model_dumbbell_main.pdf @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:562202916f4b8346253b0713accb8bdfb445ce7ead5126df32c95fbe55977151 +size 19506 diff --git 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--- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_vs_broad_model_dumbbell_main.svg @@ -0,0 +1,1919 @@ + + + + + + + + 2026-05-05T09:21:03.427277 + image/svg+xml + + + Matplotlib v3.9.2, https://matplotlib.org/ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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a/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_vs_broad_model_dumbbell_main.tex b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_vs_broad_model_dumbbell_main.tex new file mode 100644 index 0000000000000000000000000000000000000000..224fc0a29544bc6ca283ee31171a2868a8e53fa7 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/final/strict_pairwise_vs_broad_model_dumbbell_main.tex @@ -0,0 +1,6 @@ +\documentclass[border=4pt]{standalone} +\usepackage{graphicx} +\begin{document} +\textbf{Strict pairwise vs broad co-missingness}\\[0.5em] +\includegraphics[width=\textwidth]{strict_pairwise_vs_broad_model_dumbbell_main.pdf} +\end{document} diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/paper_caption.txt b/evaluation/query_family/missingness/strict_pairwise_diagnostic/paper_caption.txt new file mode 100644 index 0000000000000000000000000000000000000000..704d684636f0959cb70d1354cb0f91c2e4f9d431 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/paper_caption.txt @@ -0,0 +1 @@ +Auxiliary missingness diagnostic comparing the broad profile-only co-missing score against a stricter version that only retains pairs of columns that both exhibit meaningful native missingness. Coverage bars show that the stricter definition is more selective because datasets with only one active missing target column become inapplicable. \ No newline at end of file diff --git a/evaluation/query_family/missingness/strict_pairwise_diagnostic/paper_paragraphs.md b/evaluation/query_family/missingness/strict_pairwise_diagnostic/paper_paragraphs.md new file mode 100644 index 0000000000000000000000000000000000000000..00385dab937b6308793a19615f5a345f1ede7da9 --- /dev/null +++ b/evaluation/query_family/missingness/strict_pairwise_diagnostic/paper_paragraphs.md @@ -0,0 +1,3 @@ +The canonical missingness family intentionally keeps a broad structured-missingness view, where the missingness of one target column can depend on the states of any other usable column. + +As a sensitivity analysis, we also evaluate a strict pairwise variant that only retains pairs of columns that both carry meaningful native missingness. Differences between the two reveal whether a model preserves general conditional missingness structure more easily than direct co-missing behavior among missing columns themselves.