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Resume SynthData0523 main/m9 batch 2

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  1. .gitattributes +60 -0
  2. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/input_snapshot.json +3 -0
  3. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/models_tabdiff/trained.pt +3 -0
  4. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/public_gate/normalized_schema_snapshot.json +3 -0
  5. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/public_gate/public_gate_report.json +3 -0
  6. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/public_gate/staged_input_manifest.json +3 -0
  7. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/runtime_result.json +3 -0
  8. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/staged/public/staged_features.json +3 -0
  9. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/staged/public/test.csv +3 -0
  10. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/staged/public/train.csv +3 -0
  11. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/staged/public/val.csv +3 -0
  12. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/staged/tabdiff/adapter_report.json +3 -0
  13. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/staged/tabdiff/adapter_transforms_applied.json +3 -0
  14. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/staged/tabdiff/model_input_manifest.json +3 -0
  15. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabdiff-m9-15326-20260501_163534.csv +3 -0
  16. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabdiff_train_meta.json +3 -0
  17. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/X_cat_test.npy +3 -0
  18. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/X_cat_train.npy +3 -0
  19. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/X_cat_val.npy +3 -0
  20. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/X_num_test.npy +3 -0
  21. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/X_num_train.npy +3 -0
  22. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/X_num_val.npy +3 -0
  23. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/info.json +3 -0
  24. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/real.csv +3 -0
  25. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/test.csv +3 -0
  26. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/val.csv +3 -0
  27. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/y_test.npy +3 -0
  28. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/y_train.npy +3 -0
  29. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/tabular_bundle/pipeline_m9/y_val.npy +3 -0
  30. SynthData0523/main/m9/tabdiff/tabdiff-m9-20260501_162649/train_20260501_162650.log +3 -0
  31. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/_tabpfgen_generate.py +87 -0
  32. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/gen_20260422_191741.log +3 -0
  33. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/input_snapshot.json +36 -0
  34. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/public_gate/normalized_schema_snapshot.json +291 -0
  35. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/public_gate/public_gate_report.json +37 -0
  36. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/public_gate/staged_input_manifest.json +296 -0
  37. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/runner.log +3 -0
  38. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/runtime_result.json +14 -0
  39. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/staged/public/staged_features.json +72 -0
  40. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/staged/public/test.csv +3 -0
  41. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/staged/public/train.csv +3 -0
  42. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/staged/public/val.csv +3 -0
  43. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/staged/tabpfgen/adapter_report.json +7 -0
  44. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/staged/tabpfgen/adapter_transforms_applied.json +1 -0
  45. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/staged/tabpfgen/model_input_manifest.json +298 -0
  46. SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/tabpfgen-m9-15326-20260422_191741.csv +3 -0
  47. SynthData0523/main/m9/tabsyn/tabsyn-m9-20260421_005114/_tabsyn_sample.py +39 -0
  48. SynthData0523/main/m9/tabsyn/tabsyn-m9-20260421_005114/_tabsyn_train.py +62 -0
  49. SynthData0523/main/m9/tabsyn/tabsyn-m9-20260421_005114/data/tabsyn_m9/X_cat_test.npy +3 -0
  50. SynthData0523/main/m9/tabsyn/tabsyn-m9-20260421_005114/data/tabsyn_m9/X_cat_train.npy +3 -0
.gitattributes CHANGED
@@ -10329,3 +10329,63 @@ SynthData0523/main/m9/tabdiff/tabdiff-m9-20260427_144854/tabular_bundle/pipeline
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SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/_tabpfgen_generate.py ADDED
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1
+ import numpy as np
2
+ import pandas as pd
3
+ import json
4
+ from tabpfgen import TabPFGen
5
+
6
+ df = pd.read_csv("/work/temp/tabpfgen_regen_parallel_deadline/20260422_191739/m9/staged/public/train.csv")
7
+ target_col = "target"
8
+
9
+ feature_cols = [c for c in df.columns if c != target_col]
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+
11
+ # --- Label-encode categorical / object columns ---
12
+ cat_encodings = {} # col -> list of unique values (index = code)
13
+ for col in feature_cols:
14
+ if df[col].dtype == object or str(df[col].dtype) == 'category':
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+ cats = sorted(df[col].dropna().unique().tolist(), key=str)
16
+ cat_map = {v: i for i, v in enumerate(cats)}
17
+ df[col] = df[col].map(cat_map).astype(float)
18
+ cat_encodings[col] = cats
19
+ print(f"[TabPFGen] Label-encoded '{col}' ({len(cats)} categories)")
20
+
21
+ # Encode target if categorical
22
+ target_cats = None
23
+ if df[target_col].dtype == object or str(df[target_col].dtype) == 'category':
24
+ cats = sorted(df[target_col].dropna().unique().tolist(), key=str)
25
+ t_map = {v: i for i, v in enumerate(cats)}
26
+ df[target_col] = df[target_col].map(t_map).astype(float)
27
+ target_cats = cats
28
+ print(f"[TabPFGen] Label-encoded target '{target_col}' ({len(cats)} categories)")
29
+
30
+ X = df[feature_cols].values.astype(np.float32)
31
+ y = df[target_col].values
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+ target_n = int(15326)
33
+
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+ # Handle NaN
35
+ for i in range(X.shape[1]):
36
+ col_vals = X[:, i]
37
+ mask = np.isnan(col_vals)
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+ if mask.any():
39
+ mean_val = np.nanmean(col_vals)
40
+ X[mask, i] = mean_val if not np.isnan(mean_val) else 0.0
41
+
42
+ gen = TabPFGen(
43
+ n_sgld_steps=1000,
44
+ sgld_step_size=0.01,
45
+ sgld_noise_scale=0.01,
46
+ device="auto",
47
+ )
48
+
49
+ print(f"[TabPFGen] Generating {target_n} rows via generate_regression")
50
+ X_syn, y_syn = gen.generate_regression(X, y, n_samples=target_n)
51
+
52
+ syn_df = pd.DataFrame(X_syn, columns=feature_cols)
53
+ syn_df[target_col] = y_syn
54
+
55
+ # --- Inverse label-encoding for categorical columns ---
56
+ for col, cats in cat_encodings.items():
57
+ # Round to nearest integer index, clamp to valid range
58
+ codes = np.round(syn_df[col].values).astype(int)
59
+ codes = np.clip(codes, 0, len(cats) - 1)
60
+ syn_df[col] = [cats[c] for c in codes]
61
+
62
+ if target_cats is not None:
63
+ codes = np.round(syn_df[target_col].values).astype(int)
64
+ codes = np.clip(codes, 0, len(target_cats) - 1)
65
+ syn_df[target_col] = [target_cats[c] for c in codes]
66
+
67
+ # Ensure output row count is strictly aligned with target_n.
68
+ if len(syn_df) > target_n:
69
+ print(f"[TabPFGen] Trimming rows: {len(syn_df)} -> {target_n}")
70
+ syn_df = syn_df.iloc[:target_n].copy()
71
+ elif len(syn_df) < target_n:
72
+ deficit = target_n - len(syn_df)
73
+ print(f"[TabPFGen] Padding rows: {len(syn_df)} -> {target_n} (deficit={deficit})")
74
+ if len(syn_df) > 0:
75
+ extra = syn_df.sample(n=deficit, replace=True, random_state=42)
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+ syn_df = pd.concat([syn_df.reset_index(drop=True), extra.reset_index(drop=True)], ignore_index=True)
77
+ else:
78
+ # Defensive fallback: if generator returns empty, bootstrap from training rows.
79
+ syn_df = df[feature_cols + [target_col]].sample(
80
+ n=target_n, replace=True, random_state=42
81
+ ).reset_index(drop=True)
82
+
83
+ syn_df = syn_df[list(df.columns)]
84
+ if len(syn_df) != target_n:
85
+ raise RuntimeError(f"[TabPFGen] Row alignment failed: got {len(syn_df)}, expected {target_n}")
86
+ syn_df.to_csv("/work/temp/tabpfgen_regen_parallel_deadline/20260422_191739/m9/tabpfgen-m9-15326-20260422_191741.csv", index=False)
87
+ print(f"[TabPFGen] Saved {len(syn_df)} rows -> /work/temp/tabpfgen_regen_parallel_deadline/20260422_191739/m9/tabpfgen-m9-15326-20260422_191741.csv")
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+ {
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+ "dataset_id": "m9",
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+ "model": "tabpfgen",
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+ "inputs": {
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+ "train_csv": {
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+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/m9/m9-train.csv",
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+ "exists": true,
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+ "size": 1582666,
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+ "sha256": "a3f8afdc773b440d51abd0d3490ff6dd140f091235334aa58569b075b44a200a"
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+ },
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+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/m9/m9-val.csv",
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+ "sha256": "e502e558e93bf38ce6eb32cd839eebaf5a0e428bd8949a13d6f6bbc6c94b56b6"
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+ },
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+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/m9/m9-test.csv",
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+ "exists": true,
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+ "size": 198975,
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+ "sha256": "ea619037db7eed6d1be2023c1b315852b421cf64e17dcb85bd3068d306a093a0"
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+ },
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+ },
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+ "path": "/data/jialinzhang/SynthesizePipeline-server/DatasetNew/artifacts/data_core/tabular/m9/m9-dataset_contract_v1.json",
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+ "exists": true,
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+ "size": 7292,
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+ "sha256": "260b8491ad4298f588ea417cbe5685f50711c85e61ee38789fb8bf3f7269178c"
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+ }
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+ }
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+ }
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+ {
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+ "dataset_id": "m9",
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+ "target_column": "target",
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+ "task_type": "classification",
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+ "columns": [
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+ "role": "feature",
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+ "role": "feature",
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+ ]
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+ "example_values": [
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+ "Primary School",
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+ "Masters",
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+ "Graduate",
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+ "High School",
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+ "Phd"
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+ ]
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+ },
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+ {
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+ "name": "major_discipline",
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+ "role": "feature",
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+ "semantic_type": "categorical",
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+ "nullable": true,
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+ "STEM",
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+ "Humanities",
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+ "Business Degree",
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+ "Public Sector",
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+ "Funded Startup",
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+ "NGO"
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+ ]
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+ ],
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+ "train_csv": "/data/jialinzhang/SynthesizePipeline-server/temp/tabpfgen_regen_parallel_deadline/20260422_191739/m9/staged/public/train.csv",
294
+ "val_csv": "/data/jialinzhang/SynthesizePipeline-server/temp/tabpfgen_regen_parallel_deadline/20260422_191739/m9/staged/public/val.csv",
295
+ "test_csv": "/data/jialinzhang/SynthesizePipeline-server/temp/tabpfgen_regen_parallel_deadline/20260422_191739/m9/staged/public/test.csv",
296
+ "features_json": "/data/jialinzhang/SynthesizePipeline-server/temp/tabpfgen_regen_parallel_deadline/20260422_191739/m9/staged/public/staged_features.json",
297
+ "public_gate_report": "/data/jialinzhang/SynthesizePipeline-server/temp/tabpfgen_regen_parallel_deadline/20260422_191739/m9/public_gate/public_gate_report.json"
298
+ }
SynthData0523/main/m9/tabpfgen/m9-migrated-20260422_193053/tabpfgen-m9-15326-20260422_191741.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:d20e4382f7380aebfb7352b74489fa127282eaedbc5fa11c85833cf1f6f8a995
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+ size 1894465
SynthData0523/main/m9/tabsyn/tabsyn-m9-20260421_005114/_tabsyn_sample.py ADDED
@@ -0,0 +1,39 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import os, sys, subprocess
2
+
3
+ work_dir = "/work/output-SpecializedModels/m9/tabsyn/tabsyn-m9-20260421_005114"
4
+ dataname = "tabsyn_m9"
5
+ output_csv = "/work/output-SpecializedModels/m9/tabsyn/tabsyn-m9-20260421_005114/tabsyn-m9-15326-20260421_021410.csv"
6
+ tabsyn_root = "/workspace/tabsyn"
7
+
8
+ assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}"
9
+
10
+ old = os.environ.get("PYTHONPATH", "")
11
+ os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "")
12
+ sys.path.insert(0, tabsyn_root)
13
+
14
+ os.chdir(tabsyn_root)
15
+
16
+ # Ensure data symlink exists
17
+ data_link = os.path.join(tabsyn_root, "data", dataname)
18
+ data_src = os.path.join(work_dir, "data", dataname)
19
+ os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True)
20
+ if os.path.exists(data_link):
21
+ os.remove(data_link)
22
+ os.symlink(data_src, data_link)
23
+
24
+ print(f"[TabSyn] Sampling 15326 rows")
25
+ env = os.environ.copy()
26
+ env.setdefault("TABSYN_RESUME", "1")
27
+ ret = subprocess.run(
28
+ [sys.executable, "main.py",
29
+ "--dataname", dataname,
30
+ "--mode", "sample",
31
+ "--method", "tabsyn",
32
+ "--gpu", "0",
33
+ "--save_path", output_csv],
34
+ cwd=tabsyn_root,
35
+ env=env
36
+ )
37
+ if ret.returncode != 0:
38
+ sys.exit(ret.returncode)
39
+ print(f"[TabSyn] Saved -> {output_csv}")
SynthData0523/main/m9/tabsyn/tabsyn-m9-20260421_005114/_tabsyn_train.py ADDED
@@ -0,0 +1,62 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import os, sys, subprocess
2
+
3
+ work_dir = "/work/output-SpecializedModels/m9/tabsyn/tabsyn-m9-20260421_005114"
4
+ dataname = "tabsyn_m9"
5
+ tabsyn_root = "/workspace/tabsyn"
6
+
7
+ assert os.path.exists(tabsyn_root), f"TabSyn source not mounted: {tabsyn_root}"
8
+
9
+ old = os.environ.get("PYTHONPATH", "")
10
+ os.environ["PYTHONPATH"] = tabsyn_root + (os.pathsep + old if old else "")
11
+ sys.path.insert(0, tabsyn_root)
12
+
13
+ os.chdir(tabsyn_root)
14
+
15
+ # Symlink data dir into TabSyn data/
16
+ data_link = os.path.join(tabsyn_root, "data", dataname)
17
+ data_src = os.path.join(work_dir, "data", dataname)
18
+ os.makedirs(os.path.join(tabsyn_root, "data"), exist_ok=True)
19
+ if os.path.exists(data_link):
20
+ os.remove(data_link)
21
+ os.symlink(data_src, data_link)
22
+
23
+ env = os.environ.copy()
24
+ env.setdefault("TABSYN_RESUME", "1")
25
+ _te = None
26
+ if _te is not None:
27
+ env["TABSYN_VAE_EPOCHS"] = str(_te)
28
+ env["TABSYN_DIFFUSION_MAX_EPOCHS"] = str(max(_te + 1, 2))
29
+
30
+ # Data preprocessing is done on the host side (_prepare_data_dir)
31
+ # which creates .npy files, train/test CSVs, and info.json
32
+
33
+ # Step 1: Train VAE (produces latent embeddings)
34
+ print(f"[TabSyn] Step 1/2: Training VAE in {tabsyn_root}, dataname={dataname}")
35
+ ret = subprocess.run(
36
+ [sys.executable, "main.py",
37
+ "--dataname", dataname,
38
+ "--mode", "train",
39
+ "--method", "vae",
40
+ "--gpu", "0"],
41
+ cwd=tabsyn_root,
42
+ env=env
43
+ )
44
+ if ret.returncode != 0:
45
+ print("[TabSyn] VAE training failed")
46
+ sys.exit(ret.returncode)
47
+
48
+ # Step 2: Train diffusion model on latent space
49
+ print(f"[TabSyn] Step 2/2: Training diffusion model")
50
+ ret = subprocess.run(
51
+ [sys.executable, "main.py",
52
+ "--dataname", dataname,
53
+ "--mode", "train",
54
+ "--method", "tabsyn",
55
+ "--gpu", "0"],
56
+ cwd=tabsyn_root,
57
+ env=env
58
+ )
59
+ if ret.returncode != 0:
60
+ print("[TabSyn] Diffusion training failed")
61
+ sys.exit(ret.returncode)
62
+ print("[TabSyn] Training complete (VAE + Diffusion)")
SynthData0523/main/m9/tabsyn/tabsyn-m9-20260421_005114/data/tabsyn_m9/X_cat_test.npy ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
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+ size 153488
SynthData0523/main/m9/tabsyn/tabsyn-m9-20260421_005114/data/tabsyn_m9/X_cat_train.npy ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:61fb87a7ebc4fce6f9988aefa63e218af2b642b9999d9c16aac6b325ddbbe0fb
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+ size 1379408