Resume SynthData0523 main/c19 batch 6
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- .gitattributes +27 -0
- SynthData0523/main/c19/tabbyflow/tabbyflow-c19-20260510_210211/tabular_bundle/pipeline_c19/y_train.npy +3 -0
- SynthData0523/main/c19/tabbyflow/tabbyflow-c19-20260510_210211/tabular_bundle/pipeline_c19/y_val.npy +3 -0
- SynthData0523/main/c19/tabbyflow/tabbyflow-c19-20260510_210211/train_20260510_210216.log +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_gen.py +42 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/.gitignore +15 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/LICENSE +7 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/README.md +201 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_cat_test.npy +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_cat_train.npy +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_cat_val.npy +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_num_test.npy +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_num_train.npy +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_num_val.npy +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/info.json +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/real.csv +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/staged_features.json +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/test.csv +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/train.csv +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/val.csv +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/y_test.npy +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/y_train.npy +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/y_val.npy +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/download_dataset.py +51 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval/eval_quality.py +151 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval/mle/mle.py +781 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval/mle/tabular_dataload.py +111 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval/mle/tabular_transformer.py +110 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval/visualize_density.py +85 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval_impute.py +82 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/images/tabdiff_demo.gif +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/images/tabdiff_demo.mp4 +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/images/tabdiff_flowchart.jpg +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/main.py +46 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/process_dataset.py +646 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/src/__init__.py +11 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/src/data.py +780 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/src/env.py +39 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/src/metrics.py +157 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/src/util.py +347 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/synthcity.yaml +11 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/synthetic/pipeline_c19/real.csv +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/synthetic/pipeline_c19/test.csv +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/synthetic/pipeline_c19/val.csv +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff.yaml +35 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff/ckpt/pipeline_c19/adapter_learnable/config.pkl +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff/ckpt/pipeline_c19/adapter_learnable/ema_model_200.pt +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff/ckpt/pipeline_c19/adapter_learnable/model_200.pt +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff/configs/tabdiff_configs.toml +3 -0
- SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff/main.py +331 -0
.gitattributes
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SynthData0523/main/c19/tabbyflow/tabbyflow-c19-20260510_210211/tabular_bundle/pipeline_c19/y_train.npy
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version https://git-lfs.github.com/spec/v1
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oid sha256:977de15b5bd4785ce2c1370504303a66f974c6dd474345dc88784832776cf98f
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size 262200
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SynthData0523/main/c19/tabbyflow/tabbyflow-c19-20260510_210211/tabular_bundle/pipeline_c19/y_val.npy
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version https://git-lfs.github.com/spec/v1
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oid sha256:7a9ff40f59b5afc2a1752a1d42a673b1c24c422c859c9e3c35d6110919dfb7f7
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size 32880
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SynthData0523/main/c19/tabbyflow/tabbyflow-c19-20260510_210211/train_20260510_210216.log
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version https://git-lfs.github.com/spec/v1
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oid sha256:92927c626bcac734e7a1e18a1ebeebc825ea92b048b0036eaaa7a097f0897286
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size 270435
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SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_gen.py
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import os, shutil, subprocess, sys
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td = r"/workspace/TabDiff"
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name = r"pipeline_c19"
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src = r"/work/output-Benchmark-trainonly-v1/c19/tabdiff/tabdiff-c19-20260512_231303/tabular_bundle/pipeline_c19"
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rt = r"/work/output-Benchmark-trainonly-v1/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime"
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if not os.path.exists(rt):
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def _ignore(_, names):
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skip = {"__pycache__", "data", "synthetic", "result", "results", "ckpt"}
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return [n for n in names if n in skip or n.endswith(".pyc")]
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shutil.copytree(td, rt, ignore=_ignore)
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dst_data = os.path.join(rt, "data", name)
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dst_syn = os.path.join(rt, "synthetic", name)
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shutil.rmtree(dst_data, ignore_errors=True)
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os.makedirs(os.path.dirname(dst_data), exist_ok=True)
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shutil.copytree(src, dst_data)
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os.makedirs(dst_syn, exist_ok=True)
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for fn in ("real.csv", "test.csv", "val.csv"):
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shutil.copy(os.path.join(src, fn), os.path.join(dst_syn, fn))
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os.chdir(rt)
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os.environ["PYTHONPATH"] = rt + os.pathsep + os.environ.get("PYTHONPATH", "")
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subprocess.check_call([
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sys.executable, "-m", "tabdiff.main",
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"--dataname", name, "--mode", "test", "--gpu", "0",
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"--no_wandb", "--exp_name", r"adapter_learnable",
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"--ckpt_path", r"/work/output-Benchmark-trainonly-v1/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff/ckpt/pipeline_c19/adapter_learnable/model_200.pt",
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"--num_samples_to_generate", str(int(32759)),
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])
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# test() 写入 tabdiff/result/<dataname>/<exp>/<epoch>/samples.csv
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base = os.path.join(rt, "tabdiff", "result", name, r"adapter_learnable")
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best = None
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best_t = -1.0
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for root, _, files in os.walk(base):
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if "samples.csv" in files:
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p = os.path.join(root, "samples.csv")
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t = os.path.getmtime(p)
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if t > best_t:
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best_t = t
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best = p
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if not best:
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raise SystemExit("tabdiff: no samples.csv under " + base)
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shutil.copy(best, r"/work/output-Benchmark-trainonly-v1/c19/tabdiff/tabdiff-c19-20260512_231303/tabdiff-c19-32759-20260512_235639.csv")
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SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/.gitignore
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**/__pycache__/**
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*.pyc
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data/*
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!/data/Info/
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wandb/
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eval/
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synthetic/
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impute/
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workspace/
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debug/
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tabdiff/result/
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**/ckpt/*
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SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/LICENSE
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| 1 |
+
Copyright 2024 Minkai Xu
|
| 2 |
+
|
| 3 |
+
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
|
| 4 |
+
|
| 5 |
+
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
|
| 6 |
+
|
| 7 |
+
THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/README.md
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|
| 1 |
+
# TabDiff: a Mixed-type Diffusion Model for Tabular Data Generation
|
| 2 |
+
|
| 3 |
+
<p align="center">
|
| 4 |
+
<a href="https://github.com/MinkaiXu/TabDiff/blob/main/LICENSE">
|
| 5 |
+
<img alt="MIT License" src="https://img.shields.io/badge/License-MIT-yellow.svg">
|
| 6 |
+
</a>
|
| 7 |
+
<a href="https://openreview.net/forum?id=swvURjrt8z">
|
| 8 |
+
<img alt="Openreview" src="https://img.shields.io/badge/review-OpenReview-blue">
|
| 9 |
+
</a>
|
| 10 |
+
<a href="https://arxiv.org/abs/2410.20626">
|
| 11 |
+
<img alt="Paper URL" src="https://img.shields.io/badge/cs.LG-2410.20626-B31B1B.svg">
|
| 12 |
+
</a>
|
| 13 |
+
</p>
|
| 14 |
+
|
| 15 |
+
<div align="center">
|
| 16 |
+
<img src="images/tabdiff_demo.gif" alt="Model Logo" width="800" style="margin-left:'auto' margin-right:'auto' display:'block'"/>
|
| 17 |
+
<p><em>Figure 1: Visualing the generative process of TabDiff. A high-quality version of this video can be found at <a href="images/tabdiff_demo.mp4" download>tabdiff_demo.mp4</a></em></p>
|
| 18 |
+
</div>
|
| 19 |
+
|
| 20 |
+
This repository provides the official implementation of TabDiff: a Mixed-type Diffusion Model for Tabular Data Generation (ICLR 2025).
|
| 21 |
+
|
| 22 |
+
## Latest Update
|
| 23 |
+
- [2025.04]:The categorical-heavy dataset **[Diabetes](https://archive.ics.uci.edu/dataset/296/diabetes+130-us+hospitals+for+years+1999-2008)** evaluated in the paper has now been released!
|
| 24 |
+
- [2025.02]:Our code is finally released! We have released part of the tested datasets. The rest will be released soon!
|
| 25 |
+
|
| 26 |
+
## Introduction
|
| 27 |
+
|
| 28 |
+
<div align="center">
|
| 29 |
+
<img src="images/tabdiff_flowchart.jpg" alt="Model Logo" width="800" style="margin-left:'auto' margin-right:'auto' display:'block'"/>
|
| 30 |
+
<p><em>Figure 2: The high-level schema of TabDiff</a></em></p>
|
| 31 |
+
</div>
|
| 32 |
+
TabDiff is a unified diffusion framework designed to model all muti-modal distributions of tabular data in a single model. Its key innovations include:
|
| 33 |
+
|
| 34 |
+
1) Framing the joint diffusion process in continuous time,
|
| 35 |
+
2) A feature-wised learnable diffusion process that offsets the heterogeneity across different feature distributions,
|
| 36 |
+
3) Classifier-free guidance conditional generation for missing column value imputation.
|
| 37 |
+
|
| 38 |
+
The schema of TabDiff is presented in the figure above. For more details, please refer to [our paper](https://arxiv.org/abs/2410.20626).
|
| 39 |
+
|
| 40 |
+
|
| 41 |
+
## Environment Setup
|
| 42 |
+
|
| 43 |
+
Create the main environment with [tabdiff.yaml](tabdiff.yaml). This environment will be used for all tasks except for the evaluation of additional data fidelity metrics (i.e., $\alpha$-precision and $\beta$-recall scores)
|
| 44 |
+
|
| 45 |
+
```
|
| 46 |
+
conda env create -f tabdiff.yaml
|
| 47 |
+
```
|
| 48 |
+
|
| 49 |
+
Create another environment with [synthcity.yaml](synthcity.yaml) to evaluate additional data fidelity metrics
|
| 50 |
+
|
| 51 |
+
```
|
| 52 |
+
conda env create -f synthcity.yaml
|
| 53 |
+
```
|
| 54 |
+
|
| 55 |
+
## Datasets Preparation
|
| 56 |
+
|
| 57 |
+
### Using the datasets experimented in the paper
|
| 58 |
+
|
| 59 |
+
Download raw datasets:
|
| 60 |
+
|
| 61 |
+
```
|
| 62 |
+
python download_dataset.py
|
| 63 |
+
```
|
| 64 |
+
|
| 65 |
+
Process datasets:
|
| 66 |
+
|
| 67 |
+
```
|
| 68 |
+
python process_dataset.py
|
| 69 |
+
```
|
| 70 |
+
|
| 71 |
+
### Using your own dataset
|
| 72 |
+
|
| 73 |
+
First, create a directory for your dataset in [./data](./data):
|
| 74 |
+
```
|
| 75 |
+
cd data
|
| 76 |
+
mkdir <NAME_OF_YOUR_DATASET>
|
| 77 |
+
```
|
| 78 |
+
|
| 79 |
+
Compile your raw tabular data in .csv format. **The first row should be the header** indicating the name of each column, and the remaining rows are records. After finishing these steps, place you data's csv file in the directory you just created and name it as <NAME_OF_YOUR_DATASET>.csv.
|
| 80 |
+
|
| 81 |
+
Then, create <NAME_OF_YOUR_DATASET>.json in [./data/Info](./data/Info). Write this file with the metadata of your dataset, covering the following information:
|
| 82 |
+
```
|
| 83 |
+
{
|
| 84 |
+
"name": "<NAME_OF_YOUR_DATASET>",
|
| 85 |
+
"task_type": "[NAME_OF_TASK]", # binclass or regression
|
| 86 |
+
"header": "infer",
|
| 87 |
+
"column_names": null,
|
| 88 |
+
"num_col_idx": [LIST], # list of indices of numerical columns
|
| 89 |
+
"cat_col_idx": [LIST], # list of indices of categorical columns
|
| 90 |
+
"target_col_idx": [list], # list of indices of the target columns (for MLE)
|
| 91 |
+
"file_type": "csv",
|
| 92 |
+
"data_path": "data/<NAME_OF_YOUR_DATASET>/<NAME_OF_YOUR_DATASET>.csv"
|
| 93 |
+
"test_path": null,
|
| 94 |
+
}
|
| 95 |
+
```
|
| 96 |
+
|
| 97 |
+
### Important Notes When Creating the Info File
|
| 98 |
+
- The MLE evaluation and the imputation task (see later sections for details) assume that one column of your data is the regression or classification target. To enable these tasks, you will need to specify `target_col_idx`. If you don't need to evalute MLE, you can comment out the following line: https://github.com/MinkaiXu/TabDiff/blob/0c4fc3bbfa19046d36c5dce64628df52d5c73d15/tabdiff/main.py#L152
|
| 99 |
+
- The fields `target_col_idx`, `num_col_idx` and `cat_col_idx` must be multually exclusive—no column should appear in more than one of these lists.
|
| 100 |
+
- Set the task_type to "regression" if the target column is numerical, or "binclass" if it is categorical.
|
| 101 |
+
|
| 102 |
+
Finally, run the following command to process your dataset:
|
| 103 |
+
```
|
| 104 |
+
python process_dataset.py --dataname <NAME_OF_YOUR_DATASET>
|
| 105 |
+
```
|
| 106 |
+
|
| 107 |
+
## Training TabDiff
|
| 108 |
+
|
| 109 |
+
To train an unconditional TabDiff model across the entire table, run
|
| 110 |
+
|
| 111 |
+
```
|
| 112 |
+
python main.py --dataname <NAME_OF_DATASET> --mode train
|
| 113 |
+
```
|
| 114 |
+
|
| 115 |
+
Current Options of ```<NAME_OF_DATASET>``` are: adult, default, shoppers, magic, beijing, news
|
| 116 |
+
|
| 117 |
+
Wanb logging is enabled by default. To disable it and log locally, add the ```--no_wandb``` flag.
|
| 118 |
+
|
| 119 |
+
To disable the learnable noise schedules, add the ```--non_learnable_schedule```. Please note that in order for the code to test/sample from such model properly, you need to add this flag for all commands below.
|
| 120 |
+
|
| 121 |
+
To specify your own experiment name, which will be used for logging and saving files, add ```--exp_name <your experiment name>```. This flag overwrites the default experiment name (learnable_schedule/non_learnable_schedule), so, similar to ```--non_learnable_schedule```, once added to training, you need to add it to all following commands as well.
|
| 122 |
+
|
| 123 |
+
## Sampling and Evaluating TabDiff (Density, MLE, C2ST)
|
| 124 |
+
|
| 125 |
+
To sample synthetic tables from trained TabDiff models and evaluate them, run
|
| 126 |
+
```
|
| 127 |
+
python main.py --dataname <NAME_OF_DATASET> --mode test --report --no_wandb
|
| 128 |
+
```
|
| 129 |
+
|
| 130 |
+
This will sample 20 synthetic tables randomly. Meanwhile, it will evaluate the density, mle, and c2st scores for each sample and report their average and standard deviation. The results will be printed out in the terminal, and the samples and detailed evaluation results will be placed in ./eval/report_runs/<EXP_NAME>/<NAME_OF_DATASET>/.
|
| 131 |
+
|
| 132 |
+
## Evaluating on Additional Fidelity Metrics ($\alpha$-precision and $\beta$-recall scores)
|
| 133 |
+
To evaluate TabDiff on the additional fidelity metrics ($\alpha$-precision and $\beta$-recall scores), you need to first make sure that you have already generated some samples by the previous commands. Then, you need to switch to the `synthcity` environment (as the synthcity packet used to compute those metrics conflicts with the main environment), by running
|
| 134 |
+
```
|
| 135 |
+
conda activate synthcity
|
| 136 |
+
```
|
| 137 |
+
Then, evaluate the metrics by running
|
| 138 |
+
```
|
| 139 |
+
python eval/eval_quality.py --dataname <NAME_OF_DATASET>
|
| 140 |
+
```
|
| 141 |
+
|
| 142 |
+
Similarly, the results will be printed out in the terminal and added to ./eval/report_runs/<EXP_NAME>/<NAME_OF_DATASET>/
|
| 143 |
+
|
| 144 |
+
## Evaluating Data Privacy (DCR score)
|
| 145 |
+
To evalute the privacy metric DCR score, you first need to retrain all the models, as the metric requires an equal split between the training and testing data (our initial splits employ a 90/10 ratio). To retrain with an equal split, run the training command but append `_dcr` to ```<NAME_OF_DATASET>```
|
| 146 |
+
```
|
| 147 |
+
python main.py --dataname <NAME_OF_DATASET>_dcr --mode train
|
| 148 |
+
```
|
| 149 |
+
|
| 150 |
+
Then, test the models on DCR with the same `_dcr` suffix
|
| 151 |
+
```
|
| 152 |
+
python main.py --dataname <NAME_OF_DATASET>_dcr --mode test --report --no_wandb
|
| 153 |
+
```
|
| 154 |
+
|
| 155 |
+
|
| 156 |
+
|
| 157 |
+
## Missing Value Imputation with Classifier-free Guidance (CFG)
|
| 158 |
+
Our current experiments only include imputing the target column. However, our implementation, located at ```sample_impute()``` in [unified_ctime_diffusion.py](./tabdiff/models/unified_ctime_diffusion.py), should support imputing multiple columns with different data types.
|
| 159 |
+
|
| 160 |
+
### Training Guidance Model
|
| 161 |
+
In order to enable classifier-free guidance (CFG), you need to first train an unconditional guidance model on the target column by running the training command with the `--y_only` flag
|
| 162 |
+
```
|
| 163 |
+
python main.py --dataname <NAME_OF_DATASET> --mode train --y_only
|
| 164 |
+
```
|
| 165 |
+
|
| 166 |
+
### Sampling Imputed Tables
|
| 167 |
+
With the trained guidance model, you can then impute the missing target column by running the testing command with the `--impute` flag
|
| 168 |
+
```
|
| 169 |
+
python main.py --dataname <NAME_OF_DATASET> --mode test --impute --no_wandb
|
| 170 |
+
```
|
| 171 |
+
This will, by default, randomly produce 50 imputed tables and save them to ./impute/<NAME_OF_DATASET>/<EXP_NAME>.
|
| 172 |
+
|
| 173 |
+
### Evaluating Imputation
|
| 174 |
+
You can then evaluate the imputation quality by running
|
| 175 |
+
```
|
| 176 |
+
python eval_impute.py --dataname <NAME_OF_DATASET>
|
| 177 |
+
```
|
| 178 |
+
|
| 179 |
+
## License
|
| 180 |
+
|
| 181 |
+
This work is licensed undeer the MIT License.
|
| 182 |
+
|
| 183 |
+
## Acknowledgement
|
| 184 |
+
This repo is built upon the previous work TabSyn's [[codebase]](https://github.com/amazon-science/tabsyn). Many thanks to Hengrui!
|
| 185 |
+
|
| 186 |
+
## Citation
|
| 187 |
+
Please consider citing our work if you find it helpful in your research!
|
| 188 |
+
```
|
| 189 |
+
@inproceedings{
|
| 190 |
+
shi2025tabdiff,
|
| 191 |
+
title={TabDiff: a Mixed-type Diffusion Model for Tabular Data Generation},
|
| 192 |
+
author={Juntong Shi and Minkai Xu and Harper Hua and Hengrui Zhang and Stefano Ermon and Jure Leskovec},
|
| 193 |
+
booktitle={The Thirteenth International Conference on Learning Representations},
|
| 194 |
+
year={2025},
|
| 195 |
+
url={https://openreview.net/forum?id=swvURjrt8z}
|
| 196 |
+
}
|
| 197 |
+
```
|
| 198 |
+
## Contact
|
| 199 |
+
If you encounter any problem, please file an issue on this GitHub repo.
|
| 200 |
+
|
| 201 |
+
If you have any question regarding the paper, please contact Minkai at [minkai@stanford.edu](minkai@stanford.edu) or Juntong at [shisteve@usc.edu](shisteve@usc.edu).
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_cat_test.npy
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+
version https://git-lfs.github.com/spec/v1
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| 2 |
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|
| 3 |
+
size 360576
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_cat_train.npy
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|
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+
version https://git-lfs.github.com/spec/v1
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|
| 3 |
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size 2882920
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_cat_val.npy
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|
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+
version https://git-lfs.github.com/spec/v1
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oid sha256:d7520984bdd5518919a6429f53fe78669a4c04ec06e58bb0b5388e56628d3080
|
| 3 |
+
size 360400
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_num_test.npy
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+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:30bb71265025b7923a442d2e4818d163e76ace6a48bd5be6e29de20770bc8e15
|
| 3 |
+
size 65664
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_num_train.npy
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|
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| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:42ba0171576b4338cee3594e553bc298640933ba7a7c8a127ec106b642ee63e6
|
| 3 |
+
size 524272
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/X_num_val.npy
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:adb8a29c75d7bdc3c8f7e797e555998c90f3b3154ccaeee3dc93d8cbe6c3c2d1
|
| 3 |
+
size 65632
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/info.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:26b65c13dd436fb96a31e3ea486b261897b74f9a192fe79828dc57be59be2f35
|
| 3 |
+
size 2739
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/real.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:092346325db7f445db2c00d2f5dd9a8397ecc33eaba7b2b14d9d48d92659fcfc
|
| 3 |
+
size 51459027
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/staged_features.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a57a0c3c2a45c85e74d4496ad733ad7f30b2615f97be5155850895fee1727948
|
| 3 |
+
size 1564
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/test.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:fd9c98343a92c7b1afe63b402f07b9a55013adbfcc60ec1e17d5e026385eeec8
|
| 3 |
+
size 6304860
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/train.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:092346325db7f445db2c00d2f5dd9a8397ecc33eaba7b2b14d9d48d92659fcfc
|
| 3 |
+
size 51459027
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/val.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:69c75639e81916d3b4f2a28db38d7e15c78e442748aa5bf9fed2eb3784912a70
|
| 3 |
+
size 6331589
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/y_test.npy
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:81ee7259842c7941a044da2da22e21e7cfc06ae84f376f61f795079639c0f830
|
| 3 |
+
size 32896
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/y_train.npy
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:977de15b5bd4785ce2c1370504303a66f974c6dd474345dc88784832776cf98f
|
| 3 |
+
size 262200
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/data/pipeline_c19/y_val.npy
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7a9ff40f59b5afc2a1752a1d42a673b1c24c422c859c9e3c35d6110919dfb7f7
|
| 3 |
+
size 32880
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/download_dataset.py
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import os
|
| 2 |
+
from urllib import request
|
| 3 |
+
import zipfile
|
| 4 |
+
|
| 5 |
+
DATA_DIR = 'data'
|
| 6 |
+
|
| 7 |
+
|
| 8 |
+
NAME_URL_DICT_UCI = {
|
| 9 |
+
'adult': 'https://archive.ics.uci.edu/static/public/2/adult.zip',
|
| 10 |
+
'default': 'https://archive.ics.uci.edu/static/public/350/default+of+credit+card+clients.zip',
|
| 11 |
+
'magic': 'https://archive.ics.uci.edu/static/public/159/magic+gamma+telescope.zip',
|
| 12 |
+
'shoppers': 'https://archive.ics.uci.edu/static/public/468/online+shoppers+purchasing+intention+dataset.zip',
|
| 13 |
+
'beijing': 'https://archive.ics.uci.edu/static/public/381/beijing+pm2+5+data.zip',
|
| 14 |
+
'news': 'https://archive.ics.uci.edu/static/public/332/online+news+popularity.zip',
|
| 15 |
+
'news_nocat': 'https://archive.ics.uci.edu/static/public/332/online+news+popularity.zip',
|
| 16 |
+
'diabetes': 'https://archive.ics.uci.edu/static/public/296/diabetes+130-us+hospitals+for+years+1999-2008.zip',
|
| 17 |
+
'adult_dcr': 'https://archive.ics.uci.edu/static/public/2/adult.zip',
|
| 18 |
+
'default_dcr': 'https://archive.ics.uci.edu/static/public/350/default+of+credit+card+clients.zip',
|
| 19 |
+
'magic_dcr': 'https://archive.ics.uci.edu/static/public/159/magic+gamma+telescope.zip',
|
| 20 |
+
'shoppers_dcr': 'https://archive.ics.uci.edu/static/public/468/online+shoppers+purchasing+intention+dataset.zip',
|
| 21 |
+
'beijing_dcr': 'https://archive.ics.uci.edu/static/public/381/beijing+pm2+5+data.zip',
|
| 22 |
+
'news_dcr': 'https://archive.ics.uci.edu/static/public/332/online+news+popularity.zip',
|
| 23 |
+
'diabetes_dcr': 'https://archive.ics.uci.edu/static/public/296/diabetes+130-us+hospitals+for+years+1999-2008.zip',
|
| 24 |
+
}
|
| 25 |
+
|
| 26 |
+
def unzip_file(zip_filepath, dest_path):
|
| 27 |
+
with zipfile.ZipFile(zip_filepath, 'r') as zip_ref:
|
| 28 |
+
zip_ref.extractall(dest_path)
|
| 29 |
+
|
| 30 |
+
|
| 31 |
+
def download_from_uci(name):
|
| 32 |
+
|
| 33 |
+
print(f'Start processing dataset {name} from UCI.')
|
| 34 |
+
save_dir = f'{DATA_DIR}/{name}'
|
| 35 |
+
if not os.path.exists(save_dir):
|
| 36 |
+
os.makedirs(save_dir)
|
| 37 |
+
|
| 38 |
+
url = NAME_URL_DICT_UCI[name]
|
| 39 |
+
request.urlretrieve(url, f'{save_dir}/{name}.zip')
|
| 40 |
+
print(f'Finish downloading dataset from {url}, data has been saved to {save_dir}.')
|
| 41 |
+
|
| 42 |
+
unzip_file(f'{save_dir}/{name}.zip', save_dir)
|
| 43 |
+
print(f'Finish unzipping {name}.')
|
| 44 |
+
|
| 45 |
+
else:
|
| 46 |
+
print('Aready downloaded.')
|
| 47 |
+
|
| 48 |
+
if __name__ == '__main__':
|
| 49 |
+
for name in NAME_URL_DICT_UCI.keys():
|
| 50 |
+
download_from_uci(name)
|
| 51 |
+
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval/eval_quality.py
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import glob
|
| 2 |
+
import numpy as np
|
| 3 |
+
import pandas as pd
|
| 4 |
+
import os
|
| 5 |
+
import sys
|
| 6 |
+
import json
|
| 7 |
+
|
| 8 |
+
sys.path.append(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
|
| 9 |
+
from sklearn.preprocessing import OneHotEncoder
|
| 10 |
+
from synthcity.metrics import eval_statistical
|
| 11 |
+
from synthcity.plugins.core.dataloader import GenericDataLoader
|
| 12 |
+
|
| 13 |
+
pd.options.mode.chained_assignment = None
|
| 14 |
+
|
| 15 |
+
import argparse
|
| 16 |
+
|
| 17 |
+
parser = argparse.ArgumentParser()
|
| 18 |
+
parser.add_argument('--dataname', type=str)
|
| 19 |
+
parser.add_argument('--exp_name', type=str, default=None)
|
| 20 |
+
parser.add_argument('--non_learnable_schedule', action='store_true')
|
| 21 |
+
|
| 22 |
+
|
| 23 |
+
args = parser.parse_args()
|
| 24 |
+
|
| 25 |
+
def evaluate_quality(real_path, syn_path, info_path):
|
| 26 |
+
with open(info_path, 'r') as f:
|
| 27 |
+
info = json.load(f)
|
| 28 |
+
|
| 29 |
+
syn_data = pd.read_csv(syn_path)
|
| 30 |
+
real_data = pd.read_csv(real_path)
|
| 31 |
+
|
| 32 |
+
|
| 33 |
+
''' Special treatment for default dataset and CoDi model '''
|
| 34 |
+
|
| 35 |
+
real_data.columns = range(len(real_data.columns))
|
| 36 |
+
syn_data.columns = range(len(syn_data.columns))
|
| 37 |
+
|
| 38 |
+
num_col_idx = info['num_col_idx']
|
| 39 |
+
cat_col_idx = info['cat_col_idx']
|
| 40 |
+
target_col_idx = info['target_col_idx']
|
| 41 |
+
if info['task_type'] == 'regression':
|
| 42 |
+
num_col_idx += target_col_idx
|
| 43 |
+
else:
|
| 44 |
+
cat_col_idx += target_col_idx
|
| 45 |
+
|
| 46 |
+
num_real_data = real_data[num_col_idx]
|
| 47 |
+
cat_real_data = real_data[cat_col_idx]
|
| 48 |
+
|
| 49 |
+
num_real_data_np = num_real_data.to_numpy()
|
| 50 |
+
cat_real_data_np = cat_real_data.to_numpy().astype('str')
|
| 51 |
+
|
| 52 |
+
|
| 53 |
+
num_syn_data = syn_data[num_col_idx]
|
| 54 |
+
cat_syn_data = syn_data[cat_col_idx]
|
| 55 |
+
|
| 56 |
+
num_syn_data_np = num_syn_data.to_numpy()
|
| 57 |
+
|
| 58 |
+
# cat_syn_data_np = np.array
|
| 59 |
+
cat_syn_data_np = cat_syn_data.to_numpy().astype('str')
|
| 60 |
+
|
| 61 |
+
encoder = OneHotEncoder()
|
| 62 |
+
encoder.fit(cat_real_data_np)
|
| 63 |
+
|
| 64 |
+
|
| 65 |
+
cat_real_data_oh = encoder.transform(cat_real_data_np).toarray()
|
| 66 |
+
cat_syn_data_oh = encoder.transform(cat_syn_data_np).toarray()
|
| 67 |
+
|
| 68 |
+
le_real_data = pd.DataFrame(np.concatenate((num_real_data_np, cat_real_data_oh), axis = 1)).astype(float)
|
| 69 |
+
le_real_num = pd.DataFrame(num_real_data_np).astype(float)
|
| 70 |
+
le_real_cat = pd.DataFrame(cat_real_data_oh).astype(float)
|
| 71 |
+
|
| 72 |
+
|
| 73 |
+
le_syn_data = pd.DataFrame(np.concatenate((num_syn_data_np, cat_syn_data_oh), axis = 1)).astype(float)
|
| 74 |
+
le_syn_num = pd.DataFrame(num_syn_data_np).astype(float)
|
| 75 |
+
le_syn_cat = pd.DataFrame(cat_syn_data_oh).astype(float)
|
| 76 |
+
|
| 77 |
+
# Check for nan
|
| 78 |
+
if le_syn_data.isnull().values.any():
|
| 79 |
+
nan_coordinate = np.isnan(le_syn_data.to_numpy()).nonzero()
|
| 80 |
+
nan_row = np.unique(nan_coordinate[0])
|
| 81 |
+
print(f"Synthetic data contains NaN at row {nan_row}: ")
|
| 82 |
+
print(le_syn_data.iloc[nan_row])
|
| 83 |
+
return None, None
|
| 84 |
+
|
| 85 |
+
|
| 86 |
+
np.set_printoptions(precision=4)
|
| 87 |
+
|
| 88 |
+
result = []
|
| 89 |
+
|
| 90 |
+
print('=========== All Features ===========')
|
| 91 |
+
print('Data shape: ', le_syn_data.shape)
|
| 92 |
+
|
| 93 |
+
X_syn_loader = GenericDataLoader(le_syn_data)
|
| 94 |
+
X_real_loader = GenericDataLoader(le_real_data)
|
| 95 |
+
|
| 96 |
+
quality_evaluator = eval_statistical.AlphaPrecision()
|
| 97 |
+
qual_res = quality_evaluator.evaluate(X_real_loader, X_syn_loader)
|
| 98 |
+
qual_res = {
|
| 99 |
+
k: v for (k, v) in qual_res.items() if "naive" in k
|
| 100 |
+
} # use the naive implementation of AlphaPrecision
|
| 101 |
+
qual_score = np.mean(list(qual_res.values()))
|
| 102 |
+
|
| 103 |
+
print('alpha precision: {:.6f}, beta recall: {:.6f}'.format(qual_res['delta_precision_alpha_naive'], qual_res['delta_coverage_beta_naive'] ))
|
| 104 |
+
|
| 105 |
+
Alpha_Precision_all = qual_res['delta_precision_alpha_naive']
|
| 106 |
+
Beta_Recall_all = qual_res['delta_coverage_beta_naive']
|
| 107 |
+
|
| 108 |
+
return Alpha_Precision_all, Beta_Recall_all
|
| 109 |
+
|
| 110 |
+
if __name__ == '__main__':
|
| 111 |
+
exp_name = args.exp_name
|
| 112 |
+
if exp_name is None:
|
| 113 |
+
exp_name = "non_learnable_schedule" if args.non_learnable_schedule else "learnable_schedule"
|
| 114 |
+
dataname = args.dataname
|
| 115 |
+
data_dir = f'data/{dataname}'
|
| 116 |
+
info_path = f'{data_dir}/info.json'
|
| 117 |
+
real_path = f'synthetic/{dataname}/real.csv'
|
| 118 |
+
|
| 119 |
+
sample_dir = f"eval/report_runs/{exp_name}/{dataname}/all_samples"
|
| 120 |
+
sample_paths = glob.glob(os.path.join(sample_dir, "*.csv"))
|
| 121 |
+
print(f"{len(sample_paths )} samples loaded from {sample_dir}")
|
| 122 |
+
|
| 123 |
+
alphas, betas = [], []
|
| 124 |
+
for syn_path in sample_paths:
|
| 125 |
+
alpha_precision, beta_recall = evaluate_quality(real_path, syn_path, info_path)
|
| 126 |
+
if (alpha_precision is None) or (beta_recall is None):
|
| 127 |
+
continue
|
| 128 |
+
alphas.append(alpha_precision)
|
| 129 |
+
betas.append(beta_recall)
|
| 130 |
+
|
| 131 |
+
alphas = np.array(alphas)
|
| 132 |
+
betas = np.array(betas)
|
| 133 |
+
alpha_percent = alphas * 100
|
| 134 |
+
beta_percent = betas * 100
|
| 135 |
+
|
| 136 |
+
quality = pd.DataFrame({
|
| 137 |
+
'alpha': alpha_percent,
|
| 138 |
+
'beta': beta_percent
|
| 139 |
+
})
|
| 140 |
+
avg = quality.mean(axis=0).round(2)
|
| 141 |
+
std = quality.std(axis=0).round(2)
|
| 142 |
+
quality_avg_std = pd.concat([avg, std], axis=1, ignore_index=True)
|
| 143 |
+
quality_avg_std.columns = ["avg", "std"]
|
| 144 |
+
quality_avg_std.index = ["alpha", "beta"]
|
| 145 |
+
|
| 146 |
+
save_dir = os.path.dirname(sample_dir)
|
| 147 |
+
quality.to_csv(os.path.join(save_dir, "quality.csv"), index=True)
|
| 148 |
+
avg_std = pd.read_csv(os.path.join(save_dir, "avg_std.csv"), index_col=0)
|
| 149 |
+
avg_std = pd.concat([avg_std, quality_avg_std])
|
| 150 |
+
print(avg_std)
|
| 151 |
+
avg_std.to_csv(os.path.join(save_dir, "avg_std.csv"), index=True)
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval/mle/mle.py
ADDED
|
@@ -0,0 +1,781 @@
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|
| 1 |
+
import numpy as np
|
| 2 |
+
import pandas as pd
|
| 3 |
+
from xgboost import XGBClassifier, XGBRegressor
|
| 4 |
+
from sklearn.ensemble import AdaBoostClassifier, RandomForestClassifier, RandomForestRegressor
|
| 5 |
+
from sklearn.linear_model import LogisticRegression, LinearRegression
|
| 6 |
+
from sklearn.neural_network import MLPClassifier, MLPRegressor
|
| 7 |
+
from sklearn.preprocessing import OneHotEncoder, LabelEncoder
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| 8 |
+
from sklearn.tree import DecisionTreeClassifier
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+
from sklearn.metrics import classification_report, accuracy_score, f1_score, precision_score, recall_score, roc_auc_score
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| 10 |
+
from sklearn.metrics import explained_variance_score, mean_squared_error, mean_absolute_error, r2_score
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+
from sklearn.model_selection import ParameterGrid
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+
from sklearn.utils._testing import ignore_warnings
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+
from sklearn.exceptions import ConvergenceWarning
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+
import logging
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from prdc import compute_prdc
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from tqdm import tqdm
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+
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CATEGORICAL = "categorical"
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CONTINUOUS = "continuous"
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+
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_MODELS = {
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'binclass': [ # 184
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+
# {
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+
# 'class': DecisionTreeClassifier, # 48
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# 'kwargs': {
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+
# 'max_depth': [4, 8, 16, 32],
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+
# 'min_samples_split': [2, 4, 8],
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| 28 |
+
# 'min_samples_leaf': [1, 2, 4, 8]
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+
# }
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| 30 |
+
# },
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+
# {
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+
# 'class': AdaBoostClassifier, # 4
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# 'kwargs': {
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+
# 'n_estimators': [10, 50, 100, 200]
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+
# }
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+
# },
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# {
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| 38 |
+
# 'class': LogisticRegression, # 36
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# 'kwargs': {
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+
# 'solver': ['lbfgs'],
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| 41 |
+
# 'n_jobs': [-1],
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| 42 |
+
# 'max_iter': [10, 50, 100, 200],
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| 43 |
+
# 'C': [0.01, 0.1, 1.0],
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| 44 |
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# 'tol': [1e-01, 1e-02, 1e-04]
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# }
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# },
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+
# {
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+
# 'class': MLPClassifier, # 12
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# 'kwargs': {
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# 'hidden_layer_sizes': [(100, ), (200, ), (100, 100)],
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+
# 'max_iter': [50, 100],
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| 52 |
+
# 'alpha': [0.0001, 0.001]
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# }
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| 54 |
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# },
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# {
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+
# 'class': RandomForestClassifier, # 48
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# 'kwargs': {
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# 'max_depth': [8, 16, None],
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+
# 'min_samples_split': [2, 4, 8],
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# 'min_samples_leaf': [1, 2, 4, 8],
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# 'n_jobs': [-1]
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+
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# }
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+
# },
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{
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'class': XGBClassifier, # 36
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'kwargs': {
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'n_estimators': [10, 50, 100],
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'min_child_weight': [1, 10],
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'max_depth': [5, 10, 20],
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'gamma': [0.0, 1.0],
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+
'objective': ['binary:logistic'],
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| 73 |
+
'nthread': [-1],
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| 74 |
+
'tree_method': ['gpu_hist']
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| 75 |
+
},
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| 76 |
+
}
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| 77 |
+
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| 78 |
+
],
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+
'multiclass': [ # 132
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| 80 |
+
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| 81 |
+
# {
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| 82 |
+
# 'class': MLPClassifier, # 12
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| 83 |
+
# 'kwargs': {
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| 84 |
+
# 'hidden_layer_sizes': [(100, ), (200, ), (100, 100)],
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| 85 |
+
# 'max_iter': [50, 100],
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| 86 |
+
# 'alpha': [0.0001, 0.001]
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+
# }
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| 88 |
+
# },
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| 89 |
+
# {
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| 90 |
+
# 'class': DecisionTreeClassifier, # 48
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# 'kwargs': {
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| 92 |
+
# 'max_depth': [4, 8, 16, 32],
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| 93 |
+
# 'min_samples_split': [2, 4, 8],
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| 94 |
+
# 'min_samples_leaf': [1, 2, 4, 8]
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| 95 |
+
# }
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| 96 |
+
# },
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| 97 |
+
# {
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| 98 |
+
# 'class': RandomForestClassifier, # 36
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| 99 |
+
# 'kwargs': {
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| 100 |
+
# 'max_depth': [8, 16, None],
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| 101 |
+
# 'min_samples_split': [2, 4, 8],
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| 102 |
+
# 'min_samples_leaf': [1, 2, 4, 8],
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| 103 |
+
# 'n_jobs': [-1]
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| 104 |
+
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| 105 |
+
# }
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| 106 |
+
# },
|
| 107 |
+
{
|
| 108 |
+
'class': XGBClassifier, # 36
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| 109 |
+
'kwargs': {
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| 110 |
+
'n_estimators': [10, 50, 100],
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| 111 |
+
'min_child_weight': [1, 10],
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| 112 |
+
'max_depth': [5, 10, 20],
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| 113 |
+
'gamma': [0.0, 1.0],
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| 114 |
+
'objective': ['binary:logistic'],
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| 115 |
+
'nthread': [-1],
|
| 116 |
+
'tree_method': ['gpu_hist']
|
| 117 |
+
}
|
| 118 |
+
}
|
| 119 |
+
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| 120 |
+
],
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| 121 |
+
'regression': [ # 84
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+
# {
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| 123 |
+
# 'class': LinearRegression,
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| 124 |
+
# },
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| 125 |
+
# {
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| 126 |
+
# 'class': MLPRegressor, # 12
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| 127 |
+
# 'kwargs': {
|
| 128 |
+
# 'hidden_layer_sizes': [(100, ), (200, ), (100, 100)],
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| 129 |
+
# 'max_iter': [50, 100],
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| 130 |
+
# 'alpha': [0.0001, 0.001]
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| 131 |
+
# }
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| 132 |
+
#},
|
| 133 |
+
{
|
| 134 |
+
'class': XGBRegressor, # 36
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| 135 |
+
'kwargs': {
|
| 136 |
+
'n_estimators': [10, 50, 100],
|
| 137 |
+
'min_child_weight': [1, 10],
|
| 138 |
+
'max_depth': [5, 10, 20],
|
| 139 |
+
'gamma': [0.0, 1.0],
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| 140 |
+
'objective': ['reg:linear'],
|
| 141 |
+
'nthread': [-1],
|
| 142 |
+
'tree_method': ['gpu_hist']
|
| 143 |
+
}
|
| 144 |
+
},
|
| 145 |
+
# {
|
| 146 |
+
# 'class': RandomForestRegressor, # 36
|
| 147 |
+
# 'kwargs': {
|
| 148 |
+
# 'max_depth': [8, 16, None],
|
| 149 |
+
# 'min_samples_split': [2, 4, 8],
|
| 150 |
+
# 'min_samples_leaf': [1, 2, 4, 8],
|
| 151 |
+
# 'n_jobs': [-1]
|
| 152 |
+
# }
|
| 153 |
+
# }
|
| 154 |
+
]
|
| 155 |
+
}
|
| 156 |
+
|
| 157 |
+
def feat_transform(data, info, label_encoder = None, encoders = None, cmax = None, cmin = None):
|
| 158 |
+
num_col_idx = info['num_col_idx']
|
| 159 |
+
cat_col_idx = info['cat_col_idx']
|
| 160 |
+
target_col_idx = info['target_col_idx']
|
| 161 |
+
|
| 162 |
+
num_cols = len(num_col_idx + cat_col_idx + target_col_idx)
|
| 163 |
+
features = []
|
| 164 |
+
|
| 165 |
+
if not encoders:
|
| 166 |
+
encoders = dict()
|
| 167 |
+
for idx in range(num_cols):
|
| 168 |
+
col = data[:, idx]
|
| 169 |
+
|
| 170 |
+
if idx in target_col_idx:
|
| 171 |
+
|
| 172 |
+
if info['task_type'] != 'regression':
|
| 173 |
+
|
| 174 |
+
if not label_encoder:
|
| 175 |
+
label_encoder = LabelEncoder()
|
| 176 |
+
label_encoder.fit(col)
|
| 177 |
+
|
| 178 |
+
encoded_labels = label_encoder.transform(col)
|
| 179 |
+
labels = encoded_labels
|
| 180 |
+
else:
|
| 181 |
+
col = col.astype(np.float32)
|
| 182 |
+
labels = col.astype(np.float32)
|
| 183 |
+
|
| 184 |
+
continue
|
| 185 |
+
|
| 186 |
+
if idx in num_col_idx:
|
| 187 |
+
col = col.astype(np.float32)
|
| 188 |
+
|
| 189 |
+
if not cmin:
|
| 190 |
+
cmin = col.min()
|
| 191 |
+
|
| 192 |
+
if not cmax:
|
| 193 |
+
cmax = col.max()
|
| 194 |
+
|
| 195 |
+
if cmin >= 0 and cmax >= 1e3:
|
| 196 |
+
feature = np.log(np.maximum(col, 1e-2))
|
| 197 |
+
|
| 198 |
+
else:
|
| 199 |
+
feature = (col - cmin) / (cmax - cmin) * 5
|
| 200 |
+
|
| 201 |
+
elif idx in cat_col_idx:
|
| 202 |
+
encoder = encoders.get(idx)
|
| 203 |
+
col = col.reshape(-1, 1)
|
| 204 |
+
if encoder:
|
| 205 |
+
feature = encoder.transform(col)
|
| 206 |
+
else:
|
| 207 |
+
# encoder = OneHotEncoder(sparse=False, handle_unknown='ignore')
|
| 208 |
+
encoder = OneHotEncoder(sparse_output=False, handle_unknown='ignore') # New in version 1.2: sparse was renamed to sparse_output
|
| 209 |
+
encoders[idx] = encoder
|
| 210 |
+
feature = encoder.fit_transform(col)
|
| 211 |
+
|
| 212 |
+
|
| 213 |
+
features.append(feature)
|
| 214 |
+
features = np.column_stack(features)
|
| 215 |
+
return features, labels, label_encoder, encoders, cmax, cmin
|
| 216 |
+
|
| 217 |
+
|
| 218 |
+
def prepare_ml_problem(train, test, info, val=None):
|
| 219 |
+
# test_X, test_y, label_encoder, encoders = feat_transform(test, info)
|
| 220 |
+
# train_X, train_y, _, _ = feat_transform(train, info, label_encoder, encoders)
|
| 221 |
+
|
| 222 |
+
train_X, train_y, label_encoder, encoders, cmax, cmin = feat_transform(train, info)
|
| 223 |
+
test_X, test_y, _, _ , _, _ = feat_transform(test, info, label_encoder, encoders, cmax, cmin)
|
| 224 |
+
|
| 225 |
+
if val is not None:
|
| 226 |
+
val_X, val_y, _, _, _, _ = feat_transform(val, info, label_encoder, encoders, cmax, cmin)
|
| 227 |
+
else:
|
| 228 |
+
total_train_num = train_X.shape[0]
|
| 229 |
+
val_num = int(total_train_num / 9)
|
| 230 |
+
|
| 231 |
+
total_train_idx = np.arange(total_train_num)
|
| 232 |
+
np.random.shuffle(total_train_idx)
|
| 233 |
+
train_idx = total_train_idx[val_num:]
|
| 234 |
+
val_idx = total_train_idx[:val_num]
|
| 235 |
+
|
| 236 |
+
|
| 237 |
+
|
| 238 |
+
# val_X, val_y = train_X[val_idx], train_y[val_idx]
|
| 239 |
+
# train_X, train_y = train_X[train_idx], train_y[train_idx]
|
| 240 |
+
|
| 241 |
+
# model = _MODELS[info['task_type']]
|
| 242 |
+
|
| 243 |
+
# return train_X, train_y, train_X, train_y, test_X, test_y, model
|
| 244 |
+
|
| 245 |
+
|
| 246 |
+
|
| 247 |
+
val_X, val_y = train_X[val_idx], train_y[val_idx]
|
| 248 |
+
train_X, train_y = train_X[train_idx], train_y[train_idx]
|
| 249 |
+
|
| 250 |
+
model = _MODELS[info['task_type']]
|
| 251 |
+
|
| 252 |
+
return train_X, train_y, val_X, val_y, test_X, test_y, model
|
| 253 |
+
|
| 254 |
+
class FeatureMaker:
|
| 255 |
+
|
| 256 |
+
def __init__(self, metadata, label_column='label', label_type='int', sample=50000):
|
| 257 |
+
self.columns = metadata['columns']
|
| 258 |
+
self.label_column = label_column
|
| 259 |
+
self.label_type = label_type
|
| 260 |
+
self.sample = sample
|
| 261 |
+
self.encoders = dict()
|
| 262 |
+
|
| 263 |
+
def make_features(self, data):
|
| 264 |
+
data = data.copy()
|
| 265 |
+
np.random.shuffle(data)
|
| 266 |
+
data = data[:self.sample]
|
| 267 |
+
|
| 268 |
+
features = []
|
| 269 |
+
labels = []
|
| 270 |
+
|
| 271 |
+
for index, cinfo in enumerate(self.columns):
|
| 272 |
+
col = data[:, index]
|
| 273 |
+
if cinfo['name'] == self.label_column:
|
| 274 |
+
if self.label_type == 'int':
|
| 275 |
+
labels = col.astype(int)
|
| 276 |
+
elif self.label_type == 'float':
|
| 277 |
+
labels = col.astype(float)
|
| 278 |
+
else:
|
| 279 |
+
assert 0, 'unkown label type'
|
| 280 |
+
continue
|
| 281 |
+
|
| 282 |
+
if cinfo['type'] == CONTINUOUS:
|
| 283 |
+
cmin = cinfo['min']
|
| 284 |
+
cmax = cinfo['max']
|
| 285 |
+
if cmin >= 0 and cmax >= 1e3:
|
| 286 |
+
feature = np.log(np.maximum(col, 1e-2))
|
| 287 |
+
|
| 288 |
+
else:
|
| 289 |
+
feature = (col - cmin) / (cmax - cmin) * 5
|
| 290 |
+
|
| 291 |
+
else:
|
| 292 |
+
if cinfo['size'] <= 2:
|
| 293 |
+
feature = col
|
| 294 |
+
|
| 295 |
+
else:
|
| 296 |
+
encoder = self.encoders.get(index)
|
| 297 |
+
col = col.reshape(-1, 1)
|
| 298 |
+
if encoder:
|
| 299 |
+
feature = encoder.transform(col)
|
| 300 |
+
else:
|
| 301 |
+
encoder = OneHotEncoder(sparse=False, handle_unknown='ignore')
|
| 302 |
+
self.encoders[index] = encoder
|
| 303 |
+
feature = encoder.fit_transform(col)
|
| 304 |
+
|
| 305 |
+
features.append(feature)
|
| 306 |
+
|
| 307 |
+
features = np.column_stack(features)
|
| 308 |
+
|
| 309 |
+
return features, labels
|
| 310 |
+
|
| 311 |
+
|
| 312 |
+
def _prepare_ml_problem(train, val, test, metadata, eval):
|
| 313 |
+
fm = FeatureMaker(metadata)
|
| 314 |
+
x_trains, y_trains = [], []
|
| 315 |
+
|
| 316 |
+
for i in train:
|
| 317 |
+
x_train, y_train = fm.make_features(i)
|
| 318 |
+
x_trains.append(x_train)
|
| 319 |
+
y_trains.append(y_train)
|
| 320 |
+
|
| 321 |
+
x_val, y_val = fm.make_features(val)
|
| 322 |
+
if eval is None:
|
| 323 |
+
x_test = None
|
| 324 |
+
y_test = None
|
| 325 |
+
else:
|
| 326 |
+
x_test, y_test = fm.make_features(test)
|
| 327 |
+
model = _MODELS[metadata['problem_type']]
|
| 328 |
+
|
| 329 |
+
return x_trains, y_trains, x_val, y_val, x_test, y_test, model
|
| 330 |
+
|
| 331 |
+
|
| 332 |
+
def _weighted_f1(y_test, pred):
|
| 333 |
+
report = classification_report(y_test, pred, output_dict=True)
|
| 334 |
+
classes = list(report.keys())[:-3]
|
| 335 |
+
proportion = [ report[i]['support'] / len(y_test) for i in classes]
|
| 336 |
+
weighted_f1 = np.sum(list(map(lambda i, prop: report[i]['f1-score']* (1-prop)/(len(classes)-1), classes, proportion)))
|
| 337 |
+
return weighted_f1
|
| 338 |
+
|
| 339 |
+
|
| 340 |
+
@ignore_warnings(category=ConvergenceWarning)
|
| 341 |
+
def _evaluate_multi_classification(train, test, info, val=None):
|
| 342 |
+
x_trains, y_trains, x_valid, y_valid, x_test, y_test, classifiers = prepare_ml_problem(train, test, info, val=val)
|
| 343 |
+
best_f1_scores = []
|
| 344 |
+
unique_labels = np.unique(y_trains)
|
| 345 |
+
|
| 346 |
+
|
| 347 |
+
best_f1_scores = []
|
| 348 |
+
best_weighted_scores = []
|
| 349 |
+
best_auroc_scores = []
|
| 350 |
+
best_acc_scores = []
|
| 351 |
+
best_avg_scores = []
|
| 352 |
+
|
| 353 |
+
for model_spec in classifiers:
|
| 354 |
+
model_class = model_spec['class']
|
| 355 |
+
model_kwargs = model_spec.get('kwargs', dict())
|
| 356 |
+
model_repr = model_class.__name__
|
| 357 |
+
|
| 358 |
+
unique_labels = np.unique(y_trains)
|
| 359 |
+
|
| 360 |
+
param_set = list(ParameterGrid(model_kwargs))
|
| 361 |
+
|
| 362 |
+
results = []
|
| 363 |
+
for param in tqdm(param_set):
|
| 364 |
+
model = model_class(**param)
|
| 365 |
+
|
| 366 |
+
try:
|
| 367 |
+
model.fit(x_trains, y_trains)
|
| 368 |
+
except:
|
| 369 |
+
pass
|
| 370 |
+
|
| 371 |
+
if len(unique_labels) != len(np.unique(y_valid)):
|
| 372 |
+
pred = [unique_labels[0]] * len(x_valid)
|
| 373 |
+
pred_prob = np.array([1.] * len(x_valid))
|
| 374 |
+
else:
|
| 375 |
+
pred = model.predict(x_valid)
|
| 376 |
+
pred_prob = model.predict_proba(x_valid)
|
| 377 |
+
|
| 378 |
+
macro_f1 = f1_score(y_valid, pred, average='macro')
|
| 379 |
+
weighted_f1 = _weighted_f1(y_valid, pred)
|
| 380 |
+
acc = accuracy_score(y_valid, pred)
|
| 381 |
+
|
| 382 |
+
# 3. auroc
|
| 383 |
+
# size = [a["size"] for a in metadata["columns"] if a["name"] == "label"][0]
|
| 384 |
+
size = len(set(unique_labels))
|
| 385 |
+
rest_label = set(range(size)) - set(unique_labels)
|
| 386 |
+
tmp = []
|
| 387 |
+
j = 0
|
| 388 |
+
for i in range(size):
|
| 389 |
+
if i in rest_label:
|
| 390 |
+
tmp.append(np.array([0] * y_valid.shape[0])[:,np.newaxis])
|
| 391 |
+
else:
|
| 392 |
+
try:
|
| 393 |
+
tmp.append(pred_prob[:,[j]])
|
| 394 |
+
except:
|
| 395 |
+
tmp.append(pred_prob[:, np.newaxis])
|
| 396 |
+
j += 1
|
| 397 |
+
|
| 398 |
+
roc_auc = roc_auc_score(np.eye(size)[y_valid], np.hstack(tmp), multi_class='ovr')
|
| 399 |
+
|
| 400 |
+
results.append(
|
| 401 |
+
{
|
| 402 |
+
"name": model_repr,
|
| 403 |
+
"param": param,
|
| 404 |
+
"macro_f1": macro_f1,
|
| 405 |
+
"weighted_f1": weighted_f1,
|
| 406 |
+
"roc_auc": roc_auc,
|
| 407 |
+
"accuracy": acc
|
| 408 |
+
}
|
| 409 |
+
)
|
| 410 |
+
|
| 411 |
+
results = pd.DataFrame(results)
|
| 412 |
+
results['avg'] = results.loc[:, ['macro_f1', 'weighted_f1', 'roc_auc']].mean(axis=1)
|
| 413 |
+
best_f1_param = results.param[results.macro_f1.idxmax()]
|
| 414 |
+
best_weighted_param = results.param[results.weighted_f1.idxmax()]
|
| 415 |
+
best_auroc_param = results.param[results.roc_auc.idxmax()]
|
| 416 |
+
best_acc_param = results.param[results.accuracy.idxmax()]
|
| 417 |
+
best_avg_param = results.param[results.avg.idxmax()]
|
| 418 |
+
|
| 419 |
+
|
| 420 |
+
# test the best model
|
| 421 |
+
results = pd.DataFrame(results)
|
| 422 |
+
# best_param = results.param[results.macro_f1.idxmax()]
|
| 423 |
+
|
| 424 |
+
def _calc(best_model):
|
| 425 |
+
best_scores = []
|
| 426 |
+
|
| 427 |
+
x_train = x_trains
|
| 428 |
+
y_train = y_trains
|
| 429 |
+
|
| 430 |
+
try:
|
| 431 |
+
best_model.fit(x_train, y_train)
|
| 432 |
+
except:
|
| 433 |
+
pass
|
| 434 |
+
|
| 435 |
+
if len(unique_labels) != len(np.unique(y_test)):
|
| 436 |
+
pred = [unique_labels[0]] * len(x_test)
|
| 437 |
+
pred_prob = np.array([1.] * len(x_test))
|
| 438 |
+
else:
|
| 439 |
+
pred = best_model.predict(x_test)
|
| 440 |
+
pred_prob = best_model.predict_proba(x_test)
|
| 441 |
+
|
| 442 |
+
macro_f1 = f1_score(y_test, pred, average='macro')
|
| 443 |
+
weighted_f1 = _weighted_f1(y_test, pred)
|
| 444 |
+
acc = accuracy_score(y_test, pred)
|
| 445 |
+
|
| 446 |
+
# 3. auroc
|
| 447 |
+
size = len(set(unique_labels))
|
| 448 |
+
rest_label = set(range(size)) - set(unique_labels)
|
| 449 |
+
tmp = []
|
| 450 |
+
j = 0
|
| 451 |
+
for i in range(size):
|
| 452 |
+
if i in rest_label:
|
| 453 |
+
tmp.append(np.array([0] * y_test.shape[0])[:,np.newaxis])
|
| 454 |
+
else:
|
| 455 |
+
try:
|
| 456 |
+
tmp.append(pred_prob[:,[j]])
|
| 457 |
+
except:
|
| 458 |
+
tmp.append(pred_prob[:, np.newaxis])
|
| 459 |
+
j += 1
|
| 460 |
+
roc_auc = roc_auc_score(np.eye(size)[y_test], np.hstack(tmp), multi_class='ovr')
|
| 461 |
+
|
| 462 |
+
best_scores.append(
|
| 463 |
+
{
|
| 464 |
+
"name": model_repr,
|
| 465 |
+
"macro_f1": macro_f1,
|
| 466 |
+
"weighted_f1": weighted_f1,
|
| 467 |
+
"roc_auc": roc_auc,
|
| 468 |
+
"accuracy": acc
|
| 469 |
+
}
|
| 470 |
+
)
|
| 471 |
+
return pd.DataFrame(best_scores)
|
| 472 |
+
|
| 473 |
+
def _df(dataframe):
|
| 474 |
+
return {
|
| 475 |
+
"name": model_repr,
|
| 476 |
+
"macro_f1": dataframe.macro_f1.values[0],
|
| 477 |
+
"roc_auc": dataframe.roc_auc.values[0],
|
| 478 |
+
"weighted_f1": dataframe.weighted_f1.values[0],
|
| 479 |
+
"accuracy": dataframe.accuracy.values[0],
|
| 480 |
+
}
|
| 481 |
+
|
| 482 |
+
best_f1_scores.append(_df(_calc(model_class(**best_f1_param))))
|
| 483 |
+
best_weighted_scores.append(_df(_calc(model_class(**best_weighted_param))))
|
| 484 |
+
best_auroc_scores.append(_df(_calc(model_class(**best_auroc_param))))
|
| 485 |
+
best_acc_scores.append(_df(_calc(model_class(**best_acc_param))))
|
| 486 |
+
best_avg_scores.append(_df(_calc(model_class(**best_avg_param))))
|
| 487 |
+
|
| 488 |
+
return best_f1_scores, best_weighted_scores, best_auroc_scores, best_acc_scores, best_avg_scores
|
| 489 |
+
|
| 490 |
+
@ignore_warnings(category=ConvergenceWarning)
|
| 491 |
+
def _evaluate_binary_classification(train, test, info, val=None):
|
| 492 |
+
x_trains, y_trains, x_valid, y_valid, x_test, y_test, classifiers = prepare_ml_problem(train, test, info, val=val)
|
| 493 |
+
|
| 494 |
+
unique_labels = np.unique(y_trains)
|
| 495 |
+
|
| 496 |
+
best_f1_scores = []
|
| 497 |
+
best_weighted_scores = []
|
| 498 |
+
best_auroc_scores = []
|
| 499 |
+
best_acc_scores = []
|
| 500 |
+
best_avg_scores = []
|
| 501 |
+
|
| 502 |
+
for model_spec in classifiers:
|
| 503 |
+
|
| 504 |
+
model_class = model_spec['class']
|
| 505 |
+
model_kwargs = model_spec.get('kwargs', dict())
|
| 506 |
+
model_repr = model_class.__name__
|
| 507 |
+
|
| 508 |
+
unique_labels = np.unique(y_trains)
|
| 509 |
+
|
| 510 |
+
param_set = list(ParameterGrid(model_kwargs))
|
| 511 |
+
|
| 512 |
+
results = []
|
| 513 |
+
for param in tqdm(param_set):
|
| 514 |
+
model = model_class(**param)
|
| 515 |
+
|
| 516 |
+
try:
|
| 517 |
+
model.fit(x_trains, y_trains)
|
| 518 |
+
except ValueError:
|
| 519 |
+
pass
|
| 520 |
+
|
| 521 |
+
if len(unique_labels) == 1:
|
| 522 |
+
pred = [unique_labels[0]] * len(x_valid)
|
| 523 |
+
pred_prob = np.array([1.] * len(x_valid))
|
| 524 |
+
else:
|
| 525 |
+
pred = model.predict(x_valid)
|
| 526 |
+
pred_prob = model.predict_proba(x_valid)
|
| 527 |
+
|
| 528 |
+
binary_f1 = f1_score(y_valid, pred, average='binary')
|
| 529 |
+
weighted_f1 = _weighted_f1(y_valid, pred)
|
| 530 |
+
acc = accuracy_score(y_valid, pred)
|
| 531 |
+
precision = precision_score(y_valid, pred, average='binary')
|
| 532 |
+
recall = recall_score(y_valid, pred, average='binary')
|
| 533 |
+
macro_f1 = f1_score(y_valid, pred, average='macro')
|
| 534 |
+
|
| 535 |
+
# auroc
|
| 536 |
+
size = 2
|
| 537 |
+
rest_label = set(range(size)) - set(unique_labels)
|
| 538 |
+
tmp = []
|
| 539 |
+
j = 0
|
| 540 |
+
for i in range(size):
|
| 541 |
+
if i in rest_label:
|
| 542 |
+
tmp.append(np.array([0] * y_valid.shape[0])[:,np.newaxis])
|
| 543 |
+
else:
|
| 544 |
+
try:
|
| 545 |
+
tmp.append(pred_prob[:,[j]])
|
| 546 |
+
except:
|
| 547 |
+
tmp.append(pred_prob[:, np.newaxis])
|
| 548 |
+
j += 1
|
| 549 |
+
roc_auc = roc_auc_score(np.eye(size)[y_valid], np.hstack(tmp))
|
| 550 |
+
|
| 551 |
+
results.append(
|
| 552 |
+
{
|
| 553 |
+
"name": model_repr,
|
| 554 |
+
"param": param,
|
| 555 |
+
"binary_f1": binary_f1,
|
| 556 |
+
"weighted_f1": weighted_f1,
|
| 557 |
+
"roc_auc": roc_auc,
|
| 558 |
+
"accuracy": acc,
|
| 559 |
+
"precision": precision,
|
| 560 |
+
"recall": recall,
|
| 561 |
+
"macro_f1": macro_f1
|
| 562 |
+
}
|
| 563 |
+
)
|
| 564 |
+
|
| 565 |
+
|
| 566 |
+
# test the best model
|
| 567 |
+
results = pd.DataFrame(results)
|
| 568 |
+
results['avg'] = results.loc[:, ['binary_f1', 'weighted_f1', 'roc_auc']].mean(axis=1)
|
| 569 |
+
best_f1_param = results.param[results.binary_f1.idxmax()]
|
| 570 |
+
best_weighted_param = results.param[results.weighted_f1.idxmax()]
|
| 571 |
+
best_auroc_param = results.param[results.roc_auc.idxmax()]
|
| 572 |
+
best_acc_param = results.param[results.accuracy.idxmax()]
|
| 573 |
+
best_avg_param = results.param[results.avg.idxmax()]
|
| 574 |
+
|
| 575 |
+
|
| 576 |
+
def _calc(best_model):
|
| 577 |
+
best_scores = []
|
| 578 |
+
|
| 579 |
+
best_model.fit(x_trains, y_trains)
|
| 580 |
+
|
| 581 |
+
if len(unique_labels) == 1:
|
| 582 |
+
pred = [unique_labels[0]] * len(x_test)
|
| 583 |
+
pred_prob = np.array([1.] * len(x_test))
|
| 584 |
+
else:
|
| 585 |
+
pred = best_model.predict(x_test)
|
| 586 |
+
pred_prob = best_model.predict_proba(x_test)
|
| 587 |
+
|
| 588 |
+
binary_f1 = f1_score(y_test, pred, average='binary')
|
| 589 |
+
weighted_f1 = _weighted_f1(y_test, pred)
|
| 590 |
+
acc = accuracy_score(y_test, pred)
|
| 591 |
+
precision = precision_score(y_test, pred, average='binary')
|
| 592 |
+
recall = recall_score(y_test, pred, average='binary')
|
| 593 |
+
macro_f1 = f1_score(y_test, pred, average='macro')
|
| 594 |
+
|
| 595 |
+
# auroc
|
| 596 |
+
size = 2
|
| 597 |
+
rest_label = set(range(size)) - set(unique_labels)
|
| 598 |
+
tmp = []
|
| 599 |
+
j = 0
|
| 600 |
+
for i in range(size):
|
| 601 |
+
if i in rest_label:
|
| 602 |
+
tmp.append(np.array([0] * y_test.shape[0])[:,np.newaxis])
|
| 603 |
+
else:
|
| 604 |
+
try:
|
| 605 |
+
tmp.append(pred_prob[:,[j]])
|
| 606 |
+
except:
|
| 607 |
+
tmp.append(pred_prob[:, np.newaxis])
|
| 608 |
+
j += 1
|
| 609 |
+
try:
|
| 610 |
+
roc_auc = roc_auc_score(np.eye(size)[y_test], np.hstack(tmp))
|
| 611 |
+
except ValueError:
|
| 612 |
+
tmp[1] = tmp[1].reshape(20000, 1)
|
| 613 |
+
roc_auc = roc_auc_score(np.eye(size)[y_test], np.hstack(tmp))
|
| 614 |
+
|
| 615 |
+
best_scores.append(
|
| 616 |
+
{
|
| 617 |
+
"name": model_repr,
|
| 618 |
+
# "param": param,
|
| 619 |
+
"binary_f1": binary_f1,
|
| 620 |
+
"weighted_f1": weighted_f1,
|
| 621 |
+
"roc_auc": roc_auc,
|
| 622 |
+
"accuracy": acc,
|
| 623 |
+
"precision": precision,
|
| 624 |
+
"recall": recall,
|
| 625 |
+
"macro_f1": macro_f1
|
| 626 |
+
}
|
| 627 |
+
)
|
| 628 |
+
|
| 629 |
+
return pd.DataFrame(best_scores)
|
| 630 |
+
def _df(dataframe):
|
| 631 |
+
return {
|
| 632 |
+
"name": model_repr,
|
| 633 |
+
"binary_f1": dataframe.binary_f1.values[0],
|
| 634 |
+
"roc_auc": dataframe.roc_auc.values[0],
|
| 635 |
+
"weighted_f1": dataframe.weighted_f1.values[0],
|
| 636 |
+
"accuracy": dataframe.accuracy.values[0],
|
| 637 |
+
}
|
| 638 |
+
|
| 639 |
+
best_f1_scores.append(_df(_calc(model_class(**best_f1_param))))
|
| 640 |
+
best_weighted_scores.append(_df(_calc(model_class(**best_weighted_param))))
|
| 641 |
+
best_auroc_scores.append(_df(_calc(model_class(**best_auroc_param))))
|
| 642 |
+
best_acc_scores.append(_df(_calc(model_class(**best_acc_param))))
|
| 643 |
+
best_avg_scores.append(_df(_calc(model_class(**best_avg_param))))
|
| 644 |
+
|
| 645 |
+
return best_f1_scores, best_weighted_scores, best_auroc_scores, best_acc_scores, best_avg_scores
|
| 646 |
+
|
| 647 |
+
@ignore_warnings(category=ConvergenceWarning)
|
| 648 |
+
def _evaluate_regression(train, test, info, val=None):
|
| 649 |
+
|
| 650 |
+
x_trains, y_trains, x_valid, y_valid, x_test, y_test, regressors = prepare_ml_problem(train, test, info, val=val)
|
| 651 |
+
|
| 652 |
+
|
| 653 |
+
best_r2_scores = []
|
| 654 |
+
best_ev_scores = []
|
| 655 |
+
best_mae_scores = []
|
| 656 |
+
best_rmse_scores = []
|
| 657 |
+
best_avg_scores = []
|
| 658 |
+
|
| 659 |
+
y_trains = np.log(np.clip(y_trains, 1, 20000))
|
| 660 |
+
y_test = np.log(np.clip(y_test, 1, 20000))
|
| 661 |
+
|
| 662 |
+
for model_spec in regressors:
|
| 663 |
+
model_class = model_spec['class']
|
| 664 |
+
model_kwargs = model_spec.get('kwargs', dict())
|
| 665 |
+
model_repr = model_class.__name__
|
| 666 |
+
|
| 667 |
+
param_set = list(ParameterGrid(model_kwargs))
|
| 668 |
+
|
| 669 |
+
results = []
|
| 670 |
+
for param in tqdm(param_set):
|
| 671 |
+
model = model_class(**param)
|
| 672 |
+
model.fit(x_trains, y_trains)
|
| 673 |
+
pred = model.predict(x_valid)
|
| 674 |
+
|
| 675 |
+
r2 = r2_score(y_valid, pred)
|
| 676 |
+
explained_variance = explained_variance_score(y_valid, pred)
|
| 677 |
+
mean_squared = mean_squared_error(y_valid, pred)
|
| 678 |
+
root_mean_squared = mean_squared_error(y_valid, pred, squared=False)
|
| 679 |
+
mean_absolute = mean_absolute_error(y_valid, pred)
|
| 680 |
+
|
| 681 |
+
results.append(
|
| 682 |
+
{
|
| 683 |
+
"name": model_repr,
|
| 684 |
+
"param": param,
|
| 685 |
+
"r2": r2,
|
| 686 |
+
"explained_variance": explained_variance,
|
| 687 |
+
"mean_squared": mean_squared,
|
| 688 |
+
"mean_absolute": mean_absolute,
|
| 689 |
+
"rmse": root_mean_squared
|
| 690 |
+
}
|
| 691 |
+
)
|
| 692 |
+
|
| 693 |
+
results = pd.DataFrame(results)
|
| 694 |
+
# results['avg'] = results.loc[:, ['r2', 'rmse']].mean(axis=1)
|
| 695 |
+
best_r2_param = results.param[results.r2.idxmax()]
|
| 696 |
+
best_ev_param = results.param[results.explained_variance.idxmax()]
|
| 697 |
+
best_mae_param = results.param[results.mean_absolute.idxmin()]
|
| 698 |
+
best_rmse_param = results.param[results.rmse.idxmin()]
|
| 699 |
+
# best_avg_param = results.param[results.avg.idxmax()]
|
| 700 |
+
|
| 701 |
+
def _calc(best_model):
|
| 702 |
+
best_scores = []
|
| 703 |
+
x_train, y_train = x_trains, y_trains
|
| 704 |
+
|
| 705 |
+
best_model.fit(x_train, y_train)
|
| 706 |
+
pred = best_model.predict(x_test)
|
| 707 |
+
|
| 708 |
+
r2 = r2_score(y_test, pred)
|
| 709 |
+
explained_variance = explained_variance_score(y_test, pred)
|
| 710 |
+
mean_squared = mean_squared_error(y_test, pred)
|
| 711 |
+
root_mean_squared = mean_squared_error(y_test, pred, squared=False)
|
| 712 |
+
mean_absolute = mean_absolute_error(y_test, pred)
|
| 713 |
+
|
| 714 |
+
best_scores.append(
|
| 715 |
+
{
|
| 716 |
+
"name": model_repr,
|
| 717 |
+
"param": param,
|
| 718 |
+
"r2": r2,
|
| 719 |
+
"explained_variance": explained_variance,
|
| 720 |
+
"mean_squared": mean_squared,
|
| 721 |
+
"mean_absolute": mean_absolute,
|
| 722 |
+
"rmse": root_mean_squared
|
| 723 |
+
}
|
| 724 |
+
)
|
| 725 |
+
|
| 726 |
+
return pd.DataFrame(best_scores)
|
| 727 |
+
|
| 728 |
+
def _df(dataframe):
|
| 729 |
+
return {
|
| 730 |
+
"name": model_repr,
|
| 731 |
+
"r2": dataframe.r2.values[0].astype(float),
|
| 732 |
+
"explained_variance": dataframe.explained_variance.values[0].astype(float),
|
| 733 |
+
"MAE": dataframe.mean_absolute.values[0].astype(float),
|
| 734 |
+
"RMSE": dataframe.rmse.values[0].astype(float),
|
| 735 |
+
}
|
| 736 |
+
|
| 737 |
+
best_r2_scores.append(_df(_calc(model_class(**best_r2_param))))
|
| 738 |
+
best_ev_scores.append(_df(_calc(model_class(**best_ev_param))))
|
| 739 |
+
best_mae_scores.append(_df(_calc(model_class(**best_mae_param))))
|
| 740 |
+
best_rmse_scores.append(_df(_calc(model_class(**best_rmse_param))))
|
| 741 |
+
|
| 742 |
+
return best_r2_scores, best_rmse_scores
|
| 743 |
+
|
| 744 |
+
@ignore_warnings(category=ConvergenceWarning)
|
| 745 |
+
def compute_diversity(train, fake):
|
| 746 |
+
nearest_k = 5
|
| 747 |
+
if train.shape[0] >= 50000:
|
| 748 |
+
num = np.random.randint(0, train.shape[0], 50000)
|
| 749 |
+
real_features = train[num]
|
| 750 |
+
fake_features_lst = [i[num] for i in fake]
|
| 751 |
+
else:
|
| 752 |
+
num = train.shape[0]
|
| 753 |
+
real_features = train[:num]
|
| 754 |
+
fake_features_lst = [i[:num] for i in fake]
|
| 755 |
+
scores = []
|
| 756 |
+
for i, data in enumerate(fake_features_lst):
|
| 757 |
+
fake_features = data
|
| 758 |
+
metrics = compute_prdc(real_features=real_features,
|
| 759 |
+
fake_features=fake_features,
|
| 760 |
+
nearest_k=nearest_k)
|
| 761 |
+
metrics['i'] = i
|
| 762 |
+
scores.append(metrics)
|
| 763 |
+
return pd.DataFrame(scores).mean(axis=0), pd.DataFrame(scores).std(axis=0)
|
| 764 |
+
|
| 765 |
+
_EVALUATORS = {
|
| 766 |
+
'binclass': _evaluate_binary_classification,
|
| 767 |
+
'multiclass': _evaluate_multi_classification,
|
| 768 |
+
'regression': _evaluate_regression
|
| 769 |
+
}
|
| 770 |
+
|
| 771 |
+
def get_evaluator(problem_type):
|
| 772 |
+
return _EVALUATORS[problem_type]
|
| 773 |
+
|
| 774 |
+
|
| 775 |
+
def compute_scores(train, test, synthesized_data, metadata, eval):
|
| 776 |
+
a, b, c = _EVALUATORS[metadata['problem_type']](train=train, test=test, fake=synthesized_data, metadata=metadata, eval=eval)
|
| 777 |
+
if eval is None:
|
| 778 |
+
return a.mean(axis=0), a.std(axis=0), a[['name','param']]
|
| 779 |
+
else:
|
| 780 |
+
return a.mean(axis=0), a.std(axis=0)
|
| 781 |
+
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval/mle/tabular_dataload.py
ADDED
|
@@ -0,0 +1,111 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# coding=utf-8
|
| 2 |
+
# Copyright 2020 The Google Research Authors.
|
| 3 |
+
#
|
| 4 |
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
| 5 |
+
# you may not use this file except in compliance with the License.
|
| 6 |
+
# You may obtain a copy of the License at
|
| 7 |
+
#
|
| 8 |
+
# http://www.apache.org/licenses/LICENSE-2.0
|
| 9 |
+
#
|
| 10 |
+
# Unless required by applicable law or agreed to in writing, software
|
| 11 |
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
| 12 |
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
| 13 |
+
# See the License for the specific language governing permissions and
|
| 14 |
+
# limitations under the License.
|
| 15 |
+
|
| 16 |
+
# pylint: skip-file
|
| 17 |
+
"""Return training and evaluation/test datasets from config files."""
|
| 18 |
+
import torch
|
| 19 |
+
import numpy as np
|
| 20 |
+
import pandas as pd
|
| 21 |
+
from tabular_transformer import GeneralTransformer
|
| 22 |
+
import json
|
| 23 |
+
import logging
|
| 24 |
+
import os
|
| 25 |
+
|
| 26 |
+
CATEGORICAL = "categorical"
|
| 27 |
+
CONTINUOUS = "continuous"
|
| 28 |
+
|
| 29 |
+
LOGGER = logging.getLogger(__name__)
|
| 30 |
+
|
| 31 |
+
DATA_PATH = os.path.join(os.path.dirname(__file__), 'tabular_datasets')
|
| 32 |
+
|
| 33 |
+
def _load_json(path):
|
| 34 |
+
with open(path) as json_file:
|
| 35 |
+
return json.load(json_file)
|
| 36 |
+
|
| 37 |
+
|
| 38 |
+
def _load_file(filename, loader):
|
| 39 |
+
local_path = os.path.join(DATA_PATH, filename)
|
| 40 |
+
|
| 41 |
+
if loader == np.load:
|
| 42 |
+
return loader(local_path, allow_pickle=True)
|
| 43 |
+
return loader(local_path)
|
| 44 |
+
|
| 45 |
+
|
| 46 |
+
def _get_columns(metadata):
|
| 47 |
+
categorical_columns = list()
|
| 48 |
+
|
| 49 |
+
for column_idx, column in enumerate(metadata['columns']):
|
| 50 |
+
if column['type'] == CATEGORICAL:
|
| 51 |
+
categorical_columns.append(column_idx)
|
| 52 |
+
|
| 53 |
+
return categorical_columns
|
| 54 |
+
|
| 55 |
+
|
| 56 |
+
def load_data(name):
|
| 57 |
+
data_dir = f'data/{name}'
|
| 58 |
+
info_path = f'{data_dir}/info.json'
|
| 59 |
+
|
| 60 |
+
train = pd.read_csv(f'{data_dir}/train.csv').to_numpy()
|
| 61 |
+
test = pd.read_csv(f'{data_dir}/test.csv').to_numpy()
|
| 62 |
+
|
| 63 |
+
with open(f'{data_dir}/info.json', 'r') as f:
|
| 64 |
+
info = json.load(f)
|
| 65 |
+
|
| 66 |
+
task_type = info['task_type']
|
| 67 |
+
|
| 68 |
+
num_cols = info['num_col_idx']
|
| 69 |
+
cat_cols = info['cat_col_idx']
|
| 70 |
+
target_cols = info['target_col_idx']
|
| 71 |
+
|
| 72 |
+
if task_type != 'regression':
|
| 73 |
+
cat_cols = cat_cols + target_cols
|
| 74 |
+
|
| 75 |
+
return train, test, (cat_cols, info)
|
| 76 |
+
|
| 77 |
+
|
| 78 |
+
def get_dataset(FLAGS, evaluation=False):
|
| 79 |
+
|
| 80 |
+
batch_size = FLAGS.training_batch_size if not evaluation else FLAGS.eval_batch_size
|
| 81 |
+
|
| 82 |
+
if batch_size % torch.cuda.device_count() != 0:
|
| 83 |
+
raise ValueError(f'Batch sizes ({batch_size} must be divided by'
|
| 84 |
+
f'the number of devices ({torch.cuda.device_count()})')
|
| 85 |
+
|
| 86 |
+
|
| 87 |
+
# Create dataset builders for tabular data.
|
| 88 |
+
train, test, cols = load_data(FLAGS.dataname)
|
| 89 |
+
cols_idx = list(np.arange(train.shape[1]))
|
| 90 |
+
dis_idx = cols[0]
|
| 91 |
+
con_idx = [x for x in cols_idx if x not in dis_idx]
|
| 92 |
+
|
| 93 |
+
#split continuous and categorical
|
| 94 |
+
train_con = train[:,con_idx]
|
| 95 |
+
train_dis = train[:,dis_idx]
|
| 96 |
+
|
| 97 |
+
#new index
|
| 98 |
+
cat_idx_ = list(np.arange(train_dis.shape[1]))[:len(cols[0])]
|
| 99 |
+
|
| 100 |
+
transformer_con = GeneralTransformer()
|
| 101 |
+
transformer_dis = GeneralTransformer()
|
| 102 |
+
|
| 103 |
+
transformer_con.fit(train_con, [])
|
| 104 |
+
transformer_dis.fit(train_dis, cat_idx_)
|
| 105 |
+
|
| 106 |
+
train_con_data = transformer_con.transform(train_con)
|
| 107 |
+
train_dis_data = transformer_dis.transform(train_dis)
|
| 108 |
+
|
| 109 |
+
|
| 110 |
+
return train, train_con_data, train_dis_data, test, (transformer_con, transformer_dis, cols[1]), con_idx, dis_idx
|
| 111 |
+
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval/mle/tabular_transformer.py
ADDED
|
@@ -0,0 +1,110 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import numpy as np
|
| 2 |
+
import pandas as pd
|
| 3 |
+
|
| 4 |
+
CATEGORICAL = "categorical"
|
| 5 |
+
CONTINUOUS = "continuous"
|
| 6 |
+
|
| 7 |
+
class Transformer:
|
| 8 |
+
|
| 9 |
+
@staticmethod
|
| 10 |
+
def get_metadata(data, categorical_columns=tuple()):
|
| 11 |
+
meta = []
|
| 12 |
+
|
| 13 |
+
df = pd.DataFrame(data)
|
| 14 |
+
for index in df:
|
| 15 |
+
column = df[index]
|
| 16 |
+
|
| 17 |
+
if index in categorical_columns:
|
| 18 |
+
mapper = column.value_counts().index.tolist()
|
| 19 |
+
meta.append({
|
| 20 |
+
"name": index,
|
| 21 |
+
"type": CATEGORICAL,
|
| 22 |
+
"size": len(mapper),
|
| 23 |
+
"i2s": mapper
|
| 24 |
+
})
|
| 25 |
+
else:
|
| 26 |
+
meta.append({
|
| 27 |
+
"name": index,
|
| 28 |
+
"type": CONTINUOUS,
|
| 29 |
+
"min": column.min(),
|
| 30 |
+
"max": column.max(),
|
| 31 |
+
})
|
| 32 |
+
|
| 33 |
+
return meta
|
| 34 |
+
|
| 35 |
+
def fit(self, data, categorical_columns=tuple()):
|
| 36 |
+
raise NotImplementedError
|
| 37 |
+
|
| 38 |
+
def transform(self, data):
|
| 39 |
+
raise NotImplementedError
|
| 40 |
+
|
| 41 |
+
def inverse_transform(self, data):
|
| 42 |
+
raise NotImplementedError
|
| 43 |
+
|
| 44 |
+
|
| 45 |
+
class GeneralTransformer(Transformer):
|
| 46 |
+
|
| 47 |
+
def __init__(self, act='tanh'):
|
| 48 |
+
self.act = act
|
| 49 |
+
self.meta = None
|
| 50 |
+
self.output_dim = None
|
| 51 |
+
|
| 52 |
+
def fit(self, data, categorical_columns=tuple()):
|
| 53 |
+
self.meta = self.get_metadata(data, categorical_columns)
|
| 54 |
+
self.output_dim = 0
|
| 55 |
+
for info in self.meta:
|
| 56 |
+
if info['type'] in [CONTINUOUS]:
|
| 57 |
+
self.output_dim += 1
|
| 58 |
+
else:
|
| 59 |
+
self.output_dim += info['size']
|
| 60 |
+
|
| 61 |
+
def transform(self, data):
|
| 62 |
+
data_t = []
|
| 63 |
+
self.output_info = []
|
| 64 |
+
for id_, info in enumerate(self.meta):
|
| 65 |
+
col = data[:, id_]
|
| 66 |
+
if info['type'] == CONTINUOUS:
|
| 67 |
+
col = (col - (info['min'])) / (info['max'] - info['min'])
|
| 68 |
+
if self.act == 'tanh':
|
| 69 |
+
col = col * 2 - 1
|
| 70 |
+
data_t.append(col.reshape([-1, 1]))
|
| 71 |
+
self.output_info.append((1, self.act))
|
| 72 |
+
|
| 73 |
+
else:
|
| 74 |
+
col_t = np.zeros([len(data), info['size']])
|
| 75 |
+
idx = list(map(info['i2s'].index, col))
|
| 76 |
+
col_t[np.arange(len(data)), idx] = 1
|
| 77 |
+
data_t.append(col_t)
|
| 78 |
+
self.output_info.append((info['size'], 'softmax'))
|
| 79 |
+
|
| 80 |
+
return np.concatenate(data_t, axis=1)
|
| 81 |
+
|
| 82 |
+
def inverse_transform(self, data):
|
| 83 |
+
if self.meta[1]['type'] == CONTINUOUS:
|
| 84 |
+
data_t = np.zeros([len(data), len(self.meta)])
|
| 85 |
+
else:
|
| 86 |
+
dtype = np.dtype('U50')
|
| 87 |
+
data_t = np.empty([len(data), len(self.meta)], dtype=dtype)
|
| 88 |
+
|
| 89 |
+
|
| 90 |
+
data = data.copy()
|
| 91 |
+
for id_, info in enumerate(self.meta):
|
| 92 |
+
|
| 93 |
+
if info['type'] == CONTINUOUS:
|
| 94 |
+
current = data[:, 0]
|
| 95 |
+
data = data[:, 1:]
|
| 96 |
+
|
| 97 |
+
if self.act == 'tanh':
|
| 98 |
+
current = (current + 1) / 2
|
| 99 |
+
|
| 100 |
+
current = np.clip(current, 0, 1)
|
| 101 |
+
data_t[:, id_] = current * (info['max'] - info['min']) + info['min']
|
| 102 |
+
|
| 103 |
+
else:
|
| 104 |
+
current = data[:, :info['size']]
|
| 105 |
+
data = data[:, info['size']:]
|
| 106 |
+
idx = np.argmax(current, axis=1)
|
| 107 |
+
recovered = list(map(info['i2s'].__getitem__, idx))
|
| 108 |
+
|
| 109 |
+
data_t[:, id_] = recovered
|
| 110 |
+
return data_t
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval/visualize_density.py
ADDED
|
@@ -0,0 +1,85 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
# %%
|
| 2 |
+
import numpy as np
|
| 3 |
+
import pandas as pd
|
| 4 |
+
import torch
|
| 5 |
+
import os
|
| 6 |
+
|
| 7 |
+
import json
|
| 8 |
+
|
| 9 |
+
# Metrics
|
| 10 |
+
from sdmetrics.visualization import get_column_plot
|
| 11 |
+
|
| 12 |
+
import plotly.io as pio
|
| 13 |
+
from PIL import Image
|
| 14 |
+
from io import BytesIO
|
| 15 |
+
|
| 16 |
+
from tqdm import tqdm
|
| 17 |
+
import argparse
|
| 18 |
+
|
| 19 |
+
def main(args):
|
| 20 |
+
dataname = args.dataname
|
| 21 |
+
sample_file_name = args.sample_file_name
|
| 22 |
+
|
| 23 |
+
syn_path = f'synthetic/{dataname}/{sample_file_name}'
|
| 24 |
+
real_path = f'synthetic/{dataname}/real.csv'
|
| 25 |
+
|
| 26 |
+
syn_data = pd.read_csv(syn_path)
|
| 27 |
+
real_data = pd.read_csv(real_path)
|
| 28 |
+
|
| 29 |
+
print((real_data[:2]))
|
| 30 |
+
|
| 31 |
+
data_dir = f'data/{dataname}'
|
| 32 |
+
with open(f'{data_dir}/info.json', 'r') as f:
|
| 33 |
+
info = json.load(f)
|
| 34 |
+
|
| 35 |
+
big_img = plot_density(syn_data, real_data, info)
|
| 36 |
+
|
| 37 |
+
save_dir = f"eval/density_graphs/{dataname}"
|
| 38 |
+
if not os.path.exists(save_dir):
|
| 39 |
+
os.makedirs(save_dir)
|
| 40 |
+
save_path = os.path.join(save_dir, sample_file_name.replace('.csv', '.png'))
|
| 41 |
+
big_img.save(save_path)
|
| 42 |
+
print(f"Saved density graph to {save_path}")
|
| 43 |
+
|
| 44 |
+
def plot_density(syn_data, real_data, info, num_per_row=3):
|
| 45 |
+
column_names = info['column_names']
|
| 46 |
+
num_cat = len(column_names)
|
| 47 |
+
num_col = num_per_row
|
| 48 |
+
num_row = (num_cat-1)//num_col+1
|
| 49 |
+
|
| 50 |
+
imgs = []
|
| 51 |
+
for i, col in tqdm(enumerate(column_names), total = len(column_names)):
|
| 52 |
+
# plot_type = 'bar' if i in info['cat_col_idx'] else 'distplot'
|
| 53 |
+
plot_type = 'bar' if info['metadata']['columns'][str(i)]['sdtype'] == 'categorical' else 'distplot'
|
| 54 |
+
if plot_type == 'distplot' and (syn_data[col][0] == syn_data[col]).all(): # to tackle a very weird bug
|
| 55 |
+
# If the continuous data all aggregate at a single value, get_column_plot() cannot plot a density curve for it.
|
| 56 |
+
# So, we perturb one entry of the cont data by a small amount
|
| 57 |
+
print(f"\n ALERT: the generated samples column_{i} with name '{col}' all has the same value of {syn_data[col][0]} \n")
|
| 58 |
+
syn_data[col][0] += 1e-5
|
| 59 |
+
fig = get_column_plot(
|
| 60 |
+
real_data=real_data,
|
| 61 |
+
synthetic_data=syn_data,
|
| 62 |
+
column_name=col,
|
| 63 |
+
plot_type=plot_type
|
| 64 |
+
)
|
| 65 |
+
|
| 66 |
+
img_bytes = pio.to_image(fig, format='png')
|
| 67 |
+
img = Image.open(BytesIO(img_bytes))
|
| 68 |
+
imgs.append(img)
|
| 69 |
+
|
| 70 |
+
width, height = imgs[0].size
|
| 71 |
+
big_img = Image.new('RGB', (width * num_col, height * num_row))
|
| 72 |
+
for i, img in enumerate(imgs):
|
| 73 |
+
coordinate = (i%num_col * width, i//num_col * height)
|
| 74 |
+
big_img.paste(img, coordinate)
|
| 75 |
+
return big_img
|
| 76 |
+
|
| 77 |
+
if __name__ == '__main__':
|
| 78 |
+
parser = argparse.ArgumentParser()
|
| 79 |
+
|
| 80 |
+
parser.add_argument('--dataname', type=str, default='adult')
|
| 81 |
+
parser.add_argument('--sample_file_name', type=str, default='tabsyn.csv')
|
| 82 |
+
|
| 83 |
+
args = parser.parse_args()
|
| 84 |
+
|
| 85 |
+
main(args)
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/eval_impute.py
ADDED
|
@@ -0,0 +1,82 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import numpy as np
|
| 2 |
+
import pandas as pd
|
| 3 |
+
from sklearn.preprocessing import OneHotEncoder
|
| 4 |
+
from sklearn.metrics import f1_score, roc_auc_score
|
| 5 |
+
from sklearn.metrics import root_mean_squared_error
|
| 6 |
+
import argparse
|
| 7 |
+
import json
|
| 8 |
+
|
| 9 |
+
|
| 10 |
+
parser = argparse.ArgumentParser(description='Missing Value Imputation')
|
| 11 |
+
|
| 12 |
+
parser.add_argument('--dataname', type=str, default='adult', help='Name of dataset.')
|
| 13 |
+
parser.add_argument('--exp_name', type=str, default=None)
|
| 14 |
+
parser.add_argument('--col', type=int, default=0, help='Numerical Column to Impute')
|
| 15 |
+
parser.add_argument('--non_learnable_schedule', action='store_true')
|
| 16 |
+
|
| 17 |
+
args = parser.parse_args()
|
| 18 |
+
|
| 19 |
+
dataname = args.dataname
|
| 20 |
+
exp_name = args.exp_name
|
| 21 |
+
if exp_name is None:
|
| 22 |
+
exp_name = "non_learnable_schedule" if args.non_learnable_schedule else "learnable_schedule"
|
| 23 |
+
col = args.col
|
| 24 |
+
|
| 25 |
+
dataname = args.dataname
|
| 26 |
+
|
| 27 |
+
data_dir = f'data/{dataname}'
|
| 28 |
+
|
| 29 |
+
real_path = f'{data_dir}/test.csv'
|
| 30 |
+
|
| 31 |
+
info_path = f'data/{dataname}/info.json'
|
| 32 |
+
with open(info_path, 'r') as f:
|
| 33 |
+
info = json.load(f)
|
| 34 |
+
task_type = info['task_type']
|
| 35 |
+
|
| 36 |
+
|
| 37 |
+
encoder = OneHotEncoder()
|
| 38 |
+
|
| 39 |
+
real_data = pd.read_csv(real_path)
|
| 40 |
+
target_col = real_data.columns[info['target_col_idx'][0]]
|
| 41 |
+
|
| 42 |
+
if task_type == "binclass":
|
| 43 |
+
real_target = real_data[target_col].to_numpy().reshape(-1,1)
|
| 44 |
+
real_y = encoder.fit_transform(real_target).toarray()
|
| 45 |
+
|
| 46 |
+
syn_y = []
|
| 47 |
+
for i in range(50):
|
| 48 |
+
syn_path = f'impute/{dataname}/{exp_name}/{i}.csv'
|
| 49 |
+
syn_data = pd.read_csv(syn_path)
|
| 50 |
+
target = syn_data[target_col].to_numpy().reshape(-1, 1)
|
| 51 |
+
syn_y.append(encoder.transform(target).toarray())
|
| 52 |
+
|
| 53 |
+
syn_y_prob = np.stack(syn_y).mean(0)
|
| 54 |
+
syn_y_oh = np.argmax(syn_y_prob, axis=1)
|
| 55 |
+
num_classes = np.max(syn_y_oh) + 1
|
| 56 |
+
syn_y_oh = np.eye(num_classes)[syn_y_oh]
|
| 57 |
+
|
| 58 |
+
|
| 59 |
+
|
| 60 |
+
|
| 61 |
+
micro_f1 = f1_score(real_y.argmax(axis=1), syn_y_prob.argmax(axis=1), average='micro')
|
| 62 |
+
auc = roc_auc_score(real_y, syn_y_prob, average='micro')
|
| 63 |
+
auc_argmaxed = roc_auc_score(real_y, syn_y_oh, average='micro')
|
| 64 |
+
print("AUC: ", round(auc*100, 3))
|
| 65 |
+
else:
|
| 66 |
+
y_test = real_data[target_col].to_numpy()
|
| 67 |
+
y_test = np.log(np.clip(y_test, 1, 20000))
|
| 68 |
+
|
| 69 |
+
syn_y_ = []
|
| 70 |
+
error = []
|
| 71 |
+
for i in range(50):
|
| 72 |
+
syn_path = f'impute/{dataname}/{exp_name}/{i}.csv'
|
| 73 |
+
syn_data = pd.read_csv(syn_path)
|
| 74 |
+
syn_y = syn_data[target_col].to_numpy()
|
| 75 |
+
syn_y = np.log(np.clip(syn_y, 1, 20000))
|
| 76 |
+
syn_y_.append(syn_y)
|
| 77 |
+
|
| 78 |
+
pred = np.stack(syn_y_).mean(0)
|
| 79 |
+
root_mean_squared = root_mean_squared_error(y_test, pred) # mean_squared_error with squared=False is deprecated
|
| 80 |
+
|
| 81 |
+
print("RMSE:", round(root_mean_squared, 4))
|
| 82 |
+
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/images/tabdiff_demo.gif
ADDED
|
Git LFS Details
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/images/tabdiff_demo.mp4
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:90c8072ab9a7dcc73d7bc3ea32b0e961cae5fcd7d73b6ffc2ffb44e6c291962f
|
| 3 |
+
size 1108599
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/images/tabdiff_flowchart.jpg
ADDED
|
Git LFS Details
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/main.py
ADDED
|
@@ -0,0 +1,46 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import torch
|
| 2 |
+
from tabdiff.main import main as tabdiff_main
|
| 3 |
+
import argparse
|
| 4 |
+
|
| 5 |
+
if __name__ == '__main__':
|
| 6 |
+
parser = argparse.ArgumentParser(description='Training of TabDiff')
|
| 7 |
+
|
| 8 |
+
# General configs
|
| 9 |
+
parser.add_argument('--dataname', type=str, default='adult', help='Name dataset, one of those in data/ dir')
|
| 10 |
+
parser.add_argument('--mode', type=str, default='train', help='train or test')
|
| 11 |
+
parser.add_argument('--method', type=str, default='tabdiff', help='Currently we only release our model TabDiff. Baselines will be released soon.')
|
| 12 |
+
parser.add_argument('--gpu', type=int, default=0, help='GPU index')
|
| 13 |
+
parser.add_argument('--debug', action='store_true', help='Enable debug mode')
|
| 14 |
+
parser.add_argument('--no_wandb', action='store_true', help='disable wandb')
|
| 15 |
+
parser.add_argument('--exp_name', type=str, default=None, help='Experiment name, used to name log directories and the wandb run name')
|
| 16 |
+
parser.add_argument('--deterministic', action='store_true', help='Whether to make the entire process deterministic, i.e., fix global random seeds')
|
| 17 |
+
|
| 18 |
+
# Configs for tabdiff
|
| 19 |
+
parser.add_argument('--y_only', action='store_true', help='Train guidance model that only model the target column')
|
| 20 |
+
parser.add_argument('--non_learnable_schedule', action='store_true', help='disable learnable noise schedule')
|
| 21 |
+
|
| 22 |
+
# Configs for testing tabdiff
|
| 23 |
+
parser.add_argument('--num_samples_to_generate', type=int, default=None, help='Number of samples to be generated while testing')
|
| 24 |
+
parser.add_argument('--ckpt_path', type=str, default=None, help='Path to the model checkpoint to be tested')
|
| 25 |
+
parser.add_argument('--report', action='store_true', help="Report testing mode: this mode sequentially runs <num_runs> test runs and report the avg and std")
|
| 26 |
+
parser.add_argument('--num_runs', type=int, default=20, help="Number of runs to be averaged in the report testing mode")
|
| 27 |
+
|
| 28 |
+
# Configs for imputation
|
| 29 |
+
parser.add_argument('--impute', action='store_true')
|
| 30 |
+
parser.add_argument('--trial_start', type=int, default=0)
|
| 31 |
+
parser.add_argument('--trial_size', type=int, default=50)
|
| 32 |
+
parser.add_argument('--resample_rounds', type=int, default=1)
|
| 33 |
+
parser.add_argument('--impute_condition', type=str, default="x_t")
|
| 34 |
+
parser.add_argument('--y_only_model_path', type=str, default=None, help="Path to the y_only model checkpoint that will be used as the unconditional guidance model")
|
| 35 |
+
parser.add_argument('--w_num', type=float, default=0.6)
|
| 36 |
+
parser.add_argument('--w_cat', type=float, default=0.6)
|
| 37 |
+
|
| 38 |
+
args = parser.parse_args()
|
| 39 |
+
|
| 40 |
+
# check cuda
|
| 41 |
+
if args.gpu != -1 and torch.cuda.is_available():
|
| 42 |
+
args.device = f'cuda:{args.gpu}'
|
| 43 |
+
else:
|
| 44 |
+
args.device = 'cpu'
|
| 45 |
+
|
| 46 |
+
tabdiff_main(args)
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/process_dataset.py
ADDED
|
@@ -0,0 +1,646 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
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|
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|
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|
|
| 1 |
+
import numpy as np
|
| 2 |
+
import pandas as pd
|
| 3 |
+
import os
|
| 4 |
+
import sys
|
| 5 |
+
import json
|
| 6 |
+
import argparse
|
| 7 |
+
|
| 8 |
+
from sklearn.preprocessing import OrdinalEncoder
|
| 9 |
+
from sklearn import model_selection
|
| 10 |
+
|
| 11 |
+
TYPE_TRANSFORM ={
|
| 12 |
+
'float', np.float32,
|
| 13 |
+
'str', str,
|
| 14 |
+
'int', int
|
| 15 |
+
}
|
| 16 |
+
|
| 17 |
+
INFO_PATH = 'data/Info'
|
| 18 |
+
|
| 19 |
+
parser = argparse.ArgumentParser(description='process dataset')
|
| 20 |
+
|
| 21 |
+
# General configs
|
| 22 |
+
parser.add_argument('--dataname', type=str, default=None, help='Name of dataset.')
|
| 23 |
+
args = parser.parse_args()
|
| 24 |
+
|
| 25 |
+
def preprocess_beijing():
|
| 26 |
+
with open(f'{INFO_PATH}/beijing.json', 'r') as f:
|
| 27 |
+
info = json.load(f)
|
| 28 |
+
|
| 29 |
+
data_path = info['raw_data_path']
|
| 30 |
+
|
| 31 |
+
data_df = pd.read_csv(data_path)
|
| 32 |
+
columns = data_df.columns
|
| 33 |
+
|
| 34 |
+
data_df = data_df[columns[1:]]
|
| 35 |
+
|
| 36 |
+
|
| 37 |
+
df_cleaned = data_df.dropna()
|
| 38 |
+
df_cleaned.to_csv(info['data_path'], index = False)
|
| 39 |
+
|
| 40 |
+
def preprocess_beijing_dcr():
|
| 41 |
+
with open(f'{INFO_PATH}/beijing_dcr.json', 'r') as f:
|
| 42 |
+
info = json.load(f)
|
| 43 |
+
|
| 44 |
+
data_path = info['raw_data_path']
|
| 45 |
+
|
| 46 |
+
data_df = pd.read_csv(data_path)
|
| 47 |
+
columns = data_df.columns
|
| 48 |
+
|
| 49 |
+
data_df = data_df[columns[1:]]
|
| 50 |
+
|
| 51 |
+
|
| 52 |
+
df_cleaned = data_df.dropna()
|
| 53 |
+
df_cleaned.to_csv(info['data_path'], index = False)
|
| 54 |
+
|
| 55 |
+
def preprocess_news(remove_cat=False):
|
| 56 |
+
name = 'news' if not remove_cat else 'news_nocat'
|
| 57 |
+
with open(f'{INFO_PATH}/{name}.json', 'r') as f:
|
| 58 |
+
info = json.load(f)
|
| 59 |
+
|
| 60 |
+
data_path = info['raw_data_path']
|
| 61 |
+
data_df = pd.read_csv(data_path)
|
| 62 |
+
data_df = data_df.drop('url', axis=1)
|
| 63 |
+
|
| 64 |
+
columns = np.array(data_df.columns.tolist())
|
| 65 |
+
|
| 66 |
+
cat_columns1 = columns[list(range(12,18))]
|
| 67 |
+
cat_columns2 = columns[list(range(30,38))]
|
| 68 |
+
|
| 69 |
+
if not remove_cat:
|
| 70 |
+
cat_col1 = data_df[cat_columns1].astype(int).to_numpy().argmax(axis = 1)
|
| 71 |
+
cat_col2 = data_df[cat_columns2].astype(int).to_numpy().argmax(axis = 1)
|
| 72 |
+
|
| 73 |
+
data_df = data_df.drop(cat_columns2, axis=1)
|
| 74 |
+
data_df = data_df.drop(cat_columns1, axis=1)
|
| 75 |
+
|
| 76 |
+
if not remove_cat:
|
| 77 |
+
data_df['data_channel'] = cat_col1
|
| 78 |
+
data_df['weekday'] = cat_col2
|
| 79 |
+
|
| 80 |
+
data_save_path = f'data/{name}/{name}.csv'
|
| 81 |
+
data_df.to_csv(f'{data_save_path}', index = False)
|
| 82 |
+
|
| 83 |
+
columns = np.array(data_df.columns.tolist())
|
| 84 |
+
num_columns = columns[list(range(45))]
|
| 85 |
+
cat_columns = ['data_channel', 'weekday'] if not remove_cat else []
|
| 86 |
+
target_columns = columns[[45]]
|
| 87 |
+
|
| 88 |
+
info['num_col_idx'] = list(range(45))
|
| 89 |
+
info['cat_col_idx'] = [46, 47] if not remove_cat else []
|
| 90 |
+
info['target_col_idx'] = [45]
|
| 91 |
+
info['data_path'] = data_save_path
|
| 92 |
+
|
| 93 |
+
with open(f'{INFO_PATH}/{name}.json', 'w') as file:
|
| 94 |
+
json.dump(info, file, indent=4)
|
| 95 |
+
|
| 96 |
+
def preprocess_news_dcr(remove_cat=False):
|
| 97 |
+
name = 'news_dcr' if not remove_cat else 'news_nocat_dcr'
|
| 98 |
+
with open(f'{INFO_PATH}/{name}.json', 'r') as f:
|
| 99 |
+
info = json.load(f)
|
| 100 |
+
|
| 101 |
+
data_path = info['raw_data_path']
|
| 102 |
+
data_df = pd.read_csv(data_path)
|
| 103 |
+
data_df = data_df.drop('url', axis=1)
|
| 104 |
+
|
| 105 |
+
columns = np.array(data_df.columns.tolist())
|
| 106 |
+
|
| 107 |
+
cat_columns1 = columns[list(range(12,18))]
|
| 108 |
+
cat_columns2 = columns[list(range(30,38))]
|
| 109 |
+
|
| 110 |
+
if not remove_cat:
|
| 111 |
+
cat_col1 = data_df[cat_columns1].astype(int).to_numpy().argmax(axis = 1)
|
| 112 |
+
cat_col2 = data_df[cat_columns2].astype(int).to_numpy().argmax(axis = 1)
|
| 113 |
+
|
| 114 |
+
data_df = data_df.drop(cat_columns2, axis=1)
|
| 115 |
+
data_df = data_df.drop(cat_columns1, axis=1)
|
| 116 |
+
|
| 117 |
+
if not remove_cat:
|
| 118 |
+
data_df['data_channel'] = cat_col1
|
| 119 |
+
data_df['weekday'] = cat_col2
|
| 120 |
+
|
| 121 |
+
data_save_path = f'data/{name}/{name}.csv'
|
| 122 |
+
data_df.to_csv(f'{data_save_path}', index = False)
|
| 123 |
+
|
| 124 |
+
columns = np.array(data_df.columns.tolist())
|
| 125 |
+
num_columns = columns[list(range(45))]
|
| 126 |
+
cat_columns = ['data_channel', 'weekday'] if not remove_cat else []
|
| 127 |
+
target_columns = columns[[45]]
|
| 128 |
+
|
| 129 |
+
info['num_col_idx'] = list(range(45))
|
| 130 |
+
info['cat_col_idx'] = [46, 47] if not remove_cat else []
|
| 131 |
+
info['target_col_idx'] = [45]
|
| 132 |
+
info['data_path'] = data_save_path
|
| 133 |
+
|
| 134 |
+
with open(f'{INFO_PATH}/{name}.json', 'w') as file:
|
| 135 |
+
json.dump(info, file, indent=4)
|
| 136 |
+
|
| 137 |
+
def preprocess_diabetes():
|
| 138 |
+
"""
|
| 139 |
+
Preprocesses the diabetes dataset is aligned with the concurrent work
|
| 140 |
+
Continuous Diffusion for Mixed-Type Tabular Data (CDTD):
|
| 141 |
+
https://github.com/muellermarkus/cdtd
|
| 142 |
+
"""
|
| 143 |
+
with open(f'{INFO_PATH}/diabetes.json', 'r') as f:
|
| 144 |
+
info = json.load(f)
|
| 145 |
+
|
| 146 |
+
info['num_col_idx'] = list(range(9))
|
| 147 |
+
info['cat_col_idx'] = list(range(9, 36))
|
| 148 |
+
info['target_col_idx'] = [36]
|
| 149 |
+
|
| 150 |
+
data_path = info['raw_data_path']
|
| 151 |
+
df = pd.read_csv(data_path, sep=',')
|
| 152 |
+
df = df[info['column_names']]
|
| 153 |
+
df = df.replace(r' ', np.nan)
|
| 154 |
+
df = df.replace(r'?', np.nan)
|
| 155 |
+
df = df.replace(r'', np.nan)
|
| 156 |
+
|
| 157 |
+
num_features = [info['column_names'][idx] for idx in info['num_col_idx']]
|
| 158 |
+
cat_features = [info['column_names'][idx] for idx in info['cat_col_idx']]
|
| 159 |
+
target = info['column_names'][info['target_col_idx'][0]]
|
| 160 |
+
df[target] = np.where(df[target] == 'NO', 0, 1)
|
| 161 |
+
enc = OrdinalEncoder()
|
| 162 |
+
df['age'] = enc.fit_transform(df['age'].to_numpy().reshape(-1,1))
|
| 163 |
+
|
| 164 |
+
# remove rows with missings in targets
|
| 165 |
+
idx_target_nan = df[target].isna().to_numpy().nonzero()[0]
|
| 166 |
+
df.drop(labels = idx_target_nan, axis = 0, inplace = True)
|
| 167 |
+
|
| 168 |
+
# for categorical features, replace missings with 'empty', which will be counted as a new category
|
| 169 |
+
df[cat_features] = df[cat_features].fillna('empty')
|
| 170 |
+
|
| 171 |
+
# for continuous data, drop missing
|
| 172 |
+
df.dropna(inplace = True)
|
| 173 |
+
|
| 174 |
+
# ensure correct types
|
| 175 |
+
X_cat = df[cat_features].to_numpy().astype('str')
|
| 176 |
+
X_cont = df[num_features].to_numpy().astype('float')
|
| 177 |
+
y = df[[target]].to_numpy()
|
| 178 |
+
|
| 179 |
+
val_prop, test_prop = 0.2, 0.2
|
| 180 |
+
prop = val_prop / (1 - test_prop)
|
| 181 |
+
|
| 182 |
+
stratify = None if info['task_type'] == 'regression' else y
|
| 183 |
+
X_cat_train, X_cat_test, X_cont_train, X_cont_test, y_train, y_test = \
|
| 184 |
+
model_selection.train_test_split(X_cat, X_cont, y, test_size = test_prop,
|
| 185 |
+
stratify = stratify, random_state = 42)
|
| 186 |
+
if val_prop > 0:
|
| 187 |
+
stratify = None if info['task_type'] == 'regression' else y_train
|
| 188 |
+
X_cat_train, X_cat_val, X_cont_train, X_cont_val, y_train, y_val = \
|
| 189 |
+
model_selection.train_test_split(X_cat_train, X_cont_train, y_train,
|
| 190 |
+
stratify = stratify, test_size = prop,
|
| 191 |
+
random_state = 42)
|
| 192 |
+
|
| 193 |
+
train_df = pd.DataFrame(np.concatenate([X_cont_train, X_cat_train, y_train], axis = 1), columns = num_features + cat_features + [target])
|
| 194 |
+
val_df = pd.DataFrame(np.concatenate([X_cont_val, X_cat_val, y_val], axis = 1), columns = num_features + cat_features + [target])
|
| 195 |
+
test_df = pd.DataFrame(np.concatenate([X_cont_test, X_cat_test, y_test], axis = 1), columns = num_features + cat_features + [target])
|
| 196 |
+
|
| 197 |
+
# Save the splited data
|
| 198 |
+
train_df.to_csv(info['data_path'], index = False)
|
| 199 |
+
val_df.to_csv(info['val_path'], index = False)
|
| 200 |
+
test_df.to_csv(info['test_path'], index = False)
|
| 201 |
+
# Save updated info
|
| 202 |
+
with open(f'{INFO_PATH}/diabetes.json', 'w') as file:
|
| 203 |
+
json.dump(info, file, indent=4)
|
| 204 |
+
|
| 205 |
+
def preprocess_diabetes_dcr():
|
| 206 |
+
"""
|
| 207 |
+
Preprocesses the diabetes dataset is aligned with the concurrent work
|
| 208 |
+
Continuous Diffusion for Mixed-Type Tabular Data (CDTD):
|
| 209 |
+
https://github.com/muellermarkus/cdtd
|
| 210 |
+
"""
|
| 211 |
+
with open(f'{INFO_PATH}/diabetes_dcr.json', 'r') as f:
|
| 212 |
+
info = json.load(f)
|
| 213 |
+
|
| 214 |
+
info['num_col_idx'] = list(range(9))
|
| 215 |
+
info['cat_col_idx'] = list(range(9, 36))
|
| 216 |
+
info['target_col_idx'] = [36]
|
| 217 |
+
|
| 218 |
+
data_path = info['raw_data_path']
|
| 219 |
+
df = pd.read_csv(data_path, sep=',')
|
| 220 |
+
df = df[info['column_names']]
|
| 221 |
+
df = df.replace(r' ', np.nan)
|
| 222 |
+
df = df.replace(r'?', np.nan)
|
| 223 |
+
df = df.replace(r'', np.nan)
|
| 224 |
+
|
| 225 |
+
num_features = [info['column_names'][idx] for idx in info['num_col_idx']]
|
| 226 |
+
cat_features = [info['column_names'][idx] for idx in info['cat_col_idx']]
|
| 227 |
+
target = info['column_names'][info['target_col_idx'][0]]
|
| 228 |
+
df[target] = np.where(df[target] == 'NO', 0, 1)
|
| 229 |
+
enc = OrdinalEncoder()
|
| 230 |
+
df['age'] = enc.fit_transform(df['age'].to_numpy().reshape(-1,1))
|
| 231 |
+
|
| 232 |
+
# remove rows with missings in targets
|
| 233 |
+
idx_target_nan = df[target].isna().to_numpy().nonzero()[0]
|
| 234 |
+
df.drop(labels = idx_target_nan, axis = 0, inplace = True)
|
| 235 |
+
|
| 236 |
+
# for categorical features, replace missings with 'empty', which will be counted as a new category
|
| 237 |
+
df[cat_features] = df[cat_features].fillna('empty')
|
| 238 |
+
|
| 239 |
+
# for continuous data, drop missing
|
| 240 |
+
df.dropna(inplace = True)
|
| 241 |
+
|
| 242 |
+
# ensure correct types
|
| 243 |
+
X_cat = df[cat_features].to_numpy().astype('str')
|
| 244 |
+
X_cont = df[num_features].to_numpy().astype('float')
|
| 245 |
+
y = df[[target]].to_numpy()
|
| 246 |
+
|
| 247 |
+
val_prop, test_prop = 0.0, 0.5 # 50-50 split for dcr eval
|
| 248 |
+
prop = val_prop / (1 - test_prop)
|
| 249 |
+
|
| 250 |
+
stratify = None if info['task_type'] == 'regression' else y
|
| 251 |
+
X_cat_train, X_cat_test, X_cont_train, X_cont_test, y_train, y_test = \
|
| 252 |
+
model_selection.train_test_split(X_cat, X_cont, y, test_size = test_prop,
|
| 253 |
+
stratify = stratify, random_state = 42)
|
| 254 |
+
if val_prop > 0:
|
| 255 |
+
stratify = None if info['task_type'] == 'regression' else y_train
|
| 256 |
+
X_cat_train, X_cat_val, X_cont_train, X_cont_val, y_train, y_val = \
|
| 257 |
+
model_selection.train_test_split(X_cat_train, X_cont_train, y_train,
|
| 258 |
+
stratify = stratify, test_size = prop,
|
| 259 |
+
random_state = 42)
|
| 260 |
+
|
| 261 |
+
train_df = pd.DataFrame(np.concatenate([X_cont_train, X_cat_train, y_train], axis = 1), columns = num_features + cat_features + [target])
|
| 262 |
+
if val_prop > 0:
|
| 263 |
+
val_df = pd.DataFrame(np.concatenate([X_cont_val, X_cat_val, y_val], axis = 1), columns = num_features + cat_features + [target])
|
| 264 |
+
else:
|
| 265 |
+
val_df = pd.DataFrame(columns = num_features + cat_features + [target]).astype(train_df.dtypes)
|
| 266 |
+
test_df = pd.DataFrame(np.concatenate([X_cont_test, X_cat_test, y_test], axis = 1), columns = num_features + cat_features + [target])
|
| 267 |
+
|
| 268 |
+
# Save the splited data
|
| 269 |
+
train_df.to_csv(info['data_path'], index = False)
|
| 270 |
+
val_df.to_csv(info['val_path'], index = False)
|
| 271 |
+
test_df.to_csv(info['test_path'], index = False)
|
| 272 |
+
# Save updated info
|
| 273 |
+
with open(f'{INFO_PATH}/diabetes_dcr.json', 'w') as file:
|
| 274 |
+
json.dump(info, file, indent=4)
|
| 275 |
+
|
| 276 |
+
|
| 277 |
+
|
| 278 |
+
def get_column_name_mapping(data_df, num_col_idx, cat_col_idx, target_col_idx, column_names = None):
|
| 279 |
+
|
| 280 |
+
if not column_names:
|
| 281 |
+
column_names = np.array(data_df.columns.tolist())
|
| 282 |
+
|
| 283 |
+
|
| 284 |
+
idx_mapping = {}
|
| 285 |
+
|
| 286 |
+
curr_num_idx = 0
|
| 287 |
+
curr_cat_idx = len(num_col_idx)
|
| 288 |
+
curr_target_idx = curr_cat_idx + len(cat_col_idx)
|
| 289 |
+
|
| 290 |
+
for idx in range(len(column_names)):
|
| 291 |
+
|
| 292 |
+
if idx in num_col_idx:
|
| 293 |
+
idx_mapping[int(idx)] = curr_num_idx
|
| 294 |
+
curr_num_idx += 1
|
| 295 |
+
elif idx in cat_col_idx:
|
| 296 |
+
idx_mapping[int(idx)] = curr_cat_idx
|
| 297 |
+
curr_cat_idx += 1
|
| 298 |
+
else:
|
| 299 |
+
idx_mapping[int(idx)] = curr_target_idx
|
| 300 |
+
curr_target_idx += 1
|
| 301 |
+
|
| 302 |
+
|
| 303 |
+
inverse_idx_mapping = {}
|
| 304 |
+
for k, v in idx_mapping.items():
|
| 305 |
+
inverse_idx_mapping[int(v)] = k
|
| 306 |
+
|
| 307 |
+
idx_name_mapping = {}
|
| 308 |
+
|
| 309 |
+
for i in range(len(column_names)):
|
| 310 |
+
idx_name_mapping[int(i)] = column_names[i]
|
| 311 |
+
|
| 312 |
+
return idx_mapping, inverse_idx_mapping, idx_name_mapping
|
| 313 |
+
|
| 314 |
+
|
| 315 |
+
def train_val_test_split(data_df, cat_columns, num_train = 0, num_test = 0):
|
| 316 |
+
total_num = data_df.shape[0]
|
| 317 |
+
idx = np.arange(total_num)
|
| 318 |
+
|
| 319 |
+
|
| 320 |
+
seed = 1234
|
| 321 |
+
|
| 322 |
+
while True:
|
| 323 |
+
np.random.seed(seed)
|
| 324 |
+
np.random.shuffle(idx)
|
| 325 |
+
|
| 326 |
+
train_idx = idx[:num_train]
|
| 327 |
+
test_idx = idx[-num_test:]
|
| 328 |
+
|
| 329 |
+
|
| 330 |
+
train_df = data_df.loc[train_idx]
|
| 331 |
+
test_df = data_df.loc[test_idx]
|
| 332 |
+
|
| 333 |
+
|
| 334 |
+
|
| 335 |
+
flag = 0
|
| 336 |
+
for i in cat_columns:
|
| 337 |
+
if len(set(train_df[i])) != len(set(data_df[i])):
|
| 338 |
+
flag = 1
|
| 339 |
+
break
|
| 340 |
+
|
| 341 |
+
if flag == 0:
|
| 342 |
+
break
|
| 343 |
+
else:
|
| 344 |
+
seed += 1
|
| 345 |
+
|
| 346 |
+
return train_df, test_df, seed
|
| 347 |
+
|
| 348 |
+
|
| 349 |
+
def process_data(name):
|
| 350 |
+
|
| 351 |
+
if name == 'news':
|
| 352 |
+
preprocess_news()
|
| 353 |
+
elif name == 'news_nocat':
|
| 354 |
+
preprocess_news(remove_cat=True)
|
| 355 |
+
elif name == 'news_dcr':
|
| 356 |
+
preprocess_news_dcr()
|
| 357 |
+
elif name == 'beijing':
|
| 358 |
+
preprocess_beijing()
|
| 359 |
+
elif name == 'beijing_dcr':
|
| 360 |
+
preprocess_beijing_dcr()
|
| 361 |
+
elif name == 'diabetes':
|
| 362 |
+
preprocess_diabetes()
|
| 363 |
+
elif name == 'diabetes_dcr':
|
| 364 |
+
preprocess_diabetes_dcr()
|
| 365 |
+
|
| 366 |
+
with open(f'{INFO_PATH}/{name}.json', 'r') as f:
|
| 367 |
+
info = json.load(f)
|
| 368 |
+
|
| 369 |
+
data_path = info['data_path']
|
| 370 |
+
if info['file_type'] == 'csv':
|
| 371 |
+
data_df = pd.read_csv(data_path, header = info['header'])
|
| 372 |
+
|
| 373 |
+
elif info['file_type'] == 'xls':
|
| 374 |
+
data_df = pd.read_excel(data_path, sheet_name='Data', header=1)
|
| 375 |
+
data_df = data_df.drop('ID', axis=1)
|
| 376 |
+
|
| 377 |
+
num_data = data_df.shape[0]
|
| 378 |
+
|
| 379 |
+
column_names = info['column_names'] if info['column_names'] else data_df.columns.tolist()
|
| 380 |
+
|
| 381 |
+
num_col_idx = info['num_col_idx']
|
| 382 |
+
cat_col_idx = info['cat_col_idx']
|
| 383 |
+
target_col_idx = info['target_col_idx']
|
| 384 |
+
|
| 385 |
+
num_columns = [column_names[i] for i in num_col_idx]
|
| 386 |
+
cat_columns = [column_names[i] for i in cat_col_idx]
|
| 387 |
+
target_columns = [column_names[i] for i in target_col_idx]
|
| 388 |
+
|
| 389 |
+
idx_mapping, inverse_idx_mapping, idx_name_mapping = get_column_name_mapping(data_df, num_col_idx, cat_col_idx, target_col_idx, column_names)
|
| 390 |
+
|
| 391 |
+
has_val = bool(info['val_path'])
|
| 392 |
+
val_df = pd.DataFrame(columns=data_df.columns).astype(data_df.dtypes) # by default (val_path is not provided), set val_Df to be empty
|
| 393 |
+
if info['test_path']:
|
| 394 |
+
|
| 395 |
+
# if testing data is given
|
| 396 |
+
test_path = info['test_path']
|
| 397 |
+
|
| 398 |
+
if "adult" in name: # BUG: currently data saved at adult's test_path cannot be directly loaded. Consider integrate the following code to a preprocesing function for adult
|
| 399 |
+
with open(test_path, 'r') as f:
|
| 400 |
+
lines = f.readlines()[1:]
|
| 401 |
+
test_save_path = f'data/{name}/test.data'
|
| 402 |
+
if not os.path.exists(test_save_path):
|
| 403 |
+
with open(test_save_path, 'a') as f1:
|
| 404 |
+
for line in lines:
|
| 405 |
+
save_line = line.strip('\n').strip('.')
|
| 406 |
+
f1.write(f'{save_line}\n')
|
| 407 |
+
|
| 408 |
+
test_df = pd.read_csv(test_save_path, header = None)
|
| 409 |
+
else:
|
| 410 |
+
test_df = pd.read_csv(test_path, header = info['header'])
|
| 411 |
+
|
| 412 |
+
if has_val: # currently you cannot have a val path without a test path
|
| 413 |
+
val_path = info['val_path']
|
| 414 |
+
val_df = pd.read_csv(val_path, header = info['header'])
|
| 415 |
+
|
| 416 |
+
train_df = data_df
|
| 417 |
+
|
| 418 |
+
if "dcr" in name and "diabetes" not in name: # create 50/50 splits for dcr datasets; no need for this for diabetes dataset as it's done in preprocessing
|
| 419 |
+
complete_df = pd.concat([train_df, test_df, val_df], axis = 0, ignore_index=True)
|
| 420 |
+
num_data = complete_df.shape[0]
|
| 421 |
+
num_train = int(num_data*0.5)
|
| 422 |
+
num_test = num_data - num_train
|
| 423 |
+
complete_df.rename(columns = idx_name_mapping, inplace=True)
|
| 424 |
+
train_df, test_df, seed = train_val_test_split(complete_df, cat_columns, num_train, num_test)
|
| 425 |
+
|
| 426 |
+
else:
|
| 427 |
+
# Train/ Test Split, 90% Training (50% for dcr eval exclusively), 10% Testing (Validation set will be selected from Training set)
|
| 428 |
+
if "dcr" in name:
|
| 429 |
+
num_train = int(num_data*0.5)
|
| 430 |
+
else:
|
| 431 |
+
num_train = int(num_data*0.9)
|
| 432 |
+
num_test = num_data - num_train
|
| 433 |
+
|
| 434 |
+
train_df, test_df, seed = train_val_test_split(data_df, cat_columns, num_train, num_test)
|
| 435 |
+
|
| 436 |
+
complete_df = pd.concat([train_df, test_df, val_df], axis = 0)
|
| 437 |
+
name_idx_mapping = {val: key for key, val in idx_name_mapping.items()}
|
| 438 |
+
int_columns = []
|
| 439 |
+
int_col_idx = []
|
| 440 |
+
int_col_idx_wrt_num = []
|
| 441 |
+
for i, col_idx in enumerate(num_col_idx):
|
| 442 |
+
col = column_names[col_idx]
|
| 443 |
+
col_data = complete_df.iloc[:,col_idx]
|
| 444 |
+
is_int = (col_data%1 == 0).all()
|
| 445 |
+
if is_int:
|
| 446 |
+
int_columns.append(col)
|
| 447 |
+
int_col_idx.append(name_idx_mapping[col])
|
| 448 |
+
int_col_idx_wrt_num.append(i)
|
| 449 |
+
info['int_col_idx'] = int_col_idx
|
| 450 |
+
info['int_columns'] = int_columns
|
| 451 |
+
info['int_col_idx_wrt_num'] = int_col_idx_wrt_num
|
| 452 |
+
|
| 453 |
+
train_df.columns = range(len(train_df.columns))
|
| 454 |
+
test_df.columns = range(len(test_df.columns))
|
| 455 |
+
val_df.columns = range(len(val_df.columns))
|
| 456 |
+
|
| 457 |
+
print(name, train_df.shape, val_df.shape, test_df.shape, data_df.shape)
|
| 458 |
+
|
| 459 |
+
col_info = {}
|
| 460 |
+
|
| 461 |
+
for col_idx in num_col_idx:
|
| 462 |
+
col_info[col_idx] = {}
|
| 463 |
+
col_info['type'] = 'numerical'
|
| 464 |
+
col_info['max'] = float(train_df[col_idx].max())
|
| 465 |
+
col_info['min'] = float(train_df[col_idx].min())
|
| 466 |
+
|
| 467 |
+
for col_idx in cat_col_idx:
|
| 468 |
+
col_info[col_idx] = {}
|
| 469 |
+
col_info['type'] = 'categorical'
|
| 470 |
+
col_info['categorizes'] = list(set(train_df[col_idx]))
|
| 471 |
+
|
| 472 |
+
for col_idx in target_col_idx:
|
| 473 |
+
if info['task_type'] == 'regression':
|
| 474 |
+
col_info[col_idx] = {}
|
| 475 |
+
col_info['type'] = 'numerical'
|
| 476 |
+
col_info['max'] = float(train_df[col_idx].max())
|
| 477 |
+
col_info['min'] = float(train_df[col_idx].min())
|
| 478 |
+
else:
|
| 479 |
+
col_info[col_idx] = {}
|
| 480 |
+
col_info['type'] = 'categorical'
|
| 481 |
+
col_info['categorizes'] = list(set(train_df[col_idx]))
|
| 482 |
+
|
| 483 |
+
info['column_info'] = col_info
|
| 484 |
+
|
| 485 |
+
train_df.rename(columns = idx_name_mapping, inplace=True)
|
| 486 |
+
test_df.rename(columns = idx_name_mapping, inplace=True)
|
| 487 |
+
val_df.rename(columns = idx_name_mapping, inplace=True)
|
| 488 |
+
|
| 489 |
+
for col in num_columns:
|
| 490 |
+
if (train_df[col] == ' ?').sum() > 0:
|
| 491 |
+
print(col)
|
| 492 |
+
import pdb; pdb.set_trace()
|
| 493 |
+
if (train_df[col] == '?').sum() > 0:
|
| 494 |
+
print(col)
|
| 495 |
+
import pdb; pdb.set_trace()
|
| 496 |
+
train_df.loc[train_df[col] == '?', col] = np.nan
|
| 497 |
+
for col in cat_columns:
|
| 498 |
+
train_df.loc[train_df[col] == '?', col] = 'nan'
|
| 499 |
+
for col in num_columns:
|
| 500 |
+
if (test_df[col] == ' ?').sum() > 0:
|
| 501 |
+
print(col)
|
| 502 |
+
import pdb; pdb.set_trace()
|
| 503 |
+
if (test_df[col] == '?').sum() > 0:
|
| 504 |
+
print(col)
|
| 505 |
+
import pdb; pdb.set_trace()
|
| 506 |
+
test_df.loc[test_df[col] == '?', col] = np.nan
|
| 507 |
+
for col in cat_columns:
|
| 508 |
+
test_df.loc[test_df[col] == '?', col] = 'nan'
|
| 509 |
+
for col in num_columns:
|
| 510 |
+
val_df.loc[val_df[col] == '?', col] = np.nan
|
| 511 |
+
for col in cat_columns:
|
| 512 |
+
val_df.loc[val_df[col] == '?', col] = 'nan'
|
| 513 |
+
|
| 514 |
+
if train_df.isna().any().any():
|
| 515 |
+
print("Training data contains nan in the numerical cols")
|
| 516 |
+
import pdb; pdb.set_trace()
|
| 517 |
+
|
| 518 |
+
|
| 519 |
+
|
| 520 |
+
X_num_train = train_df[num_columns].to_numpy().astype(np.float32)
|
| 521 |
+
X_cat_train = train_df[cat_columns].to_numpy()
|
| 522 |
+
y_train = train_df[target_columns].to_numpy()
|
| 523 |
+
|
| 524 |
+
|
| 525 |
+
X_num_test = test_df[num_columns].to_numpy().astype(np.float32)
|
| 526 |
+
X_cat_test = test_df[cat_columns].to_numpy()
|
| 527 |
+
y_test = test_df[target_columns].to_numpy()
|
| 528 |
+
|
| 529 |
+
X_num_val = val_df[num_columns].to_numpy().astype(np.float32)
|
| 530 |
+
X_cat_val = val_df[cat_columns].to_numpy()
|
| 531 |
+
y_val = val_df[target_columns].to_numpy()
|
| 532 |
+
|
| 533 |
+
save_dir = f'data/{name}'
|
| 534 |
+
np.save(f'{save_dir}/X_num_train.npy', X_num_train)
|
| 535 |
+
np.save(f'{save_dir}/X_cat_train.npy', X_cat_train)
|
| 536 |
+
np.save(f'{save_dir}/y_train.npy', y_train)
|
| 537 |
+
|
| 538 |
+
np.save(f'{save_dir}/X_num_test.npy', X_num_test)
|
| 539 |
+
np.save(f'{save_dir}/X_cat_test.npy', X_cat_test)
|
| 540 |
+
np.save(f'{save_dir}/y_test.npy', y_test)
|
| 541 |
+
|
| 542 |
+
if has_val:
|
| 543 |
+
np.save(f'{save_dir}/X_num_val.npy', X_num_val)
|
| 544 |
+
np.save(f'{save_dir}/X_cat_val.npy', X_cat_val)
|
| 545 |
+
np.save(f'{save_dir}/y_val.npy', y_val)
|
| 546 |
+
|
| 547 |
+
train_df[num_columns] = train_df[num_columns].astype(np.float32)
|
| 548 |
+
test_df[num_columns] = test_df[num_columns].astype(np.float32)
|
| 549 |
+
val_df[num_columns] = val_df[num_columns].astype(np.float32)
|
| 550 |
+
|
| 551 |
+
|
| 552 |
+
train_df.to_csv(f'{save_dir}/train.csv', index = False)
|
| 553 |
+
test_df.to_csv(f'{save_dir}/test.csv', index = False)
|
| 554 |
+
if has_val:
|
| 555 |
+
val_df.to_csv(f'{save_dir}/val.csv', index = False)
|
| 556 |
+
|
| 557 |
+
if not os.path.exists(f'synthetic/{name}'):
|
| 558 |
+
os.makedirs(f'synthetic/{name}')
|
| 559 |
+
|
| 560 |
+
train_df.to_csv(f'synthetic/{name}/real.csv', index = False)
|
| 561 |
+
test_df.to_csv(f'synthetic/{name}/test.csv', index = False)
|
| 562 |
+
|
| 563 |
+
if has_val:
|
| 564 |
+
val_df.to_csv(f'synthetic/{name}/val.csv', index = False)
|
| 565 |
+
|
| 566 |
+
print('Numerical', X_num_train.shape)
|
| 567 |
+
print('Categorical', X_cat_train.shape)
|
| 568 |
+
|
| 569 |
+
info['column_names'] = column_names
|
| 570 |
+
info['train_num'] = train_df.shape[0]
|
| 571 |
+
info['test_num'] = test_df.shape[0]
|
| 572 |
+
info['val_num'] = val_df.shape[0]
|
| 573 |
+
|
| 574 |
+
info['idx_mapping'] = idx_mapping
|
| 575 |
+
info['inverse_idx_mapping'] = inverse_idx_mapping
|
| 576 |
+
info['idx_name_mapping'] = idx_name_mapping
|
| 577 |
+
|
| 578 |
+
metadata = {'columns': {}}
|
| 579 |
+
task_type = info['task_type']
|
| 580 |
+
num_col_idx = info['num_col_idx']
|
| 581 |
+
cat_col_idx = info['cat_col_idx']
|
| 582 |
+
target_col_idx = info['target_col_idx']
|
| 583 |
+
|
| 584 |
+
for i in num_col_idx:
|
| 585 |
+
metadata['columns'][i] = {}
|
| 586 |
+
metadata['columns'][i]['sdtype'] = 'numerical'
|
| 587 |
+
metadata['columns'][i]['computer_representation'] = 'Float'
|
| 588 |
+
|
| 589 |
+
for i in cat_col_idx:
|
| 590 |
+
metadata['columns'][i] = {}
|
| 591 |
+
metadata['columns'][i]['sdtype'] = 'categorical'
|
| 592 |
+
|
| 593 |
+
|
| 594 |
+
if task_type == 'regression':
|
| 595 |
+
|
| 596 |
+
for i in target_col_idx:
|
| 597 |
+
metadata['columns'][i] = {}
|
| 598 |
+
metadata['columns'][i]['sdtype'] = 'numerical'
|
| 599 |
+
metadata['columns'][i]['computer_representation'] = 'Float'
|
| 600 |
+
|
| 601 |
+
else:
|
| 602 |
+
for i in target_col_idx:
|
| 603 |
+
metadata['columns'][i] = {}
|
| 604 |
+
metadata['columns'][i]['sdtype'] = 'categorical'
|
| 605 |
+
|
| 606 |
+
info['metadata'] = metadata
|
| 607 |
+
|
| 608 |
+
with open(f'{save_dir}/info.json', 'w') as file:
|
| 609 |
+
json.dump(info, file, indent=4)
|
| 610 |
+
|
| 611 |
+
print(f'Processing and Saving {name} Successfully!')
|
| 612 |
+
|
| 613 |
+
print(name)
|
| 614 |
+
print('Total', info['train_num'] + info['test_num'])
|
| 615 |
+
print('Train', info['train_num'])
|
| 616 |
+
print('Val', info['val_num'])
|
| 617 |
+
print('Test', info['test_num'])
|
| 618 |
+
if info['task_type'] == 'regression':
|
| 619 |
+
num = len(info['num_col_idx'] + info['target_col_idx'])
|
| 620 |
+
cat = len(info['cat_col_idx'])
|
| 621 |
+
else:
|
| 622 |
+
cat = len(info['cat_col_idx'] + info['target_col_idx'])
|
| 623 |
+
num = len(info['num_col_idx'])
|
| 624 |
+
print('Num', num)
|
| 625 |
+
print('Int', len(info['int_col_idx']))
|
| 626 |
+
print('Cat', cat)
|
| 627 |
+
|
| 628 |
+
|
| 629 |
+
if __name__ == "__main__":
|
| 630 |
+
|
| 631 |
+
if args.dataname:
|
| 632 |
+
process_data(args.dataname)
|
| 633 |
+
else:
|
| 634 |
+
for name in [
|
| 635 |
+
'adult', 'default', 'shoppers', 'magic', 'beijing', 'news', 'news_nocat', 'diabetes',
|
| 636 |
+
'adult_dcr',
|
| 637 |
+
'default_dcr',
|
| 638 |
+
'shoppers_dcr',
|
| 639 |
+
'beijing_dcr',
|
| 640 |
+
'news_dcr',
|
| 641 |
+
'diabetes_dcr'
|
| 642 |
+
]:
|
| 643 |
+
process_data(name)
|
| 644 |
+
|
| 645 |
+
|
| 646 |
+
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/src/__init__.py
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import torch
|
| 2 |
+
from icecream import install
|
| 3 |
+
|
| 4 |
+
torch.set_num_threads(1)
|
| 5 |
+
install()
|
| 6 |
+
|
| 7 |
+
from . import env # noqa
|
| 8 |
+
from .data import * # noqa
|
| 9 |
+
from .env import * # noqa
|
| 10 |
+
from .metrics import * # noqa
|
| 11 |
+
from .util import * # noqa
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/src/data.py
ADDED
|
@@ -0,0 +1,780 @@
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|
| 1 |
+
import hashlib
|
| 2 |
+
from collections import Counter
|
| 3 |
+
from copy import deepcopy
|
| 4 |
+
from dataclasses import astuple, dataclass, replace
|
| 5 |
+
from importlib.resources import path
|
| 6 |
+
from pathlib import Path
|
| 7 |
+
from typing import Any, Literal, Optional, Union, cast, Tuple, Dict, List
|
| 8 |
+
|
| 9 |
+
import numpy as np
|
| 10 |
+
import pandas as pd
|
| 11 |
+
from sklearn.model_selection import train_test_split
|
| 12 |
+
from sklearn.pipeline import make_pipeline
|
| 13 |
+
import sklearn.preprocessing
|
| 14 |
+
import torch
|
| 15 |
+
import os
|
| 16 |
+
from category_encoders import LeaveOneOutEncoder
|
| 17 |
+
from sklearn.impute import SimpleImputer
|
| 18 |
+
from sklearn.preprocessing import StandardScaler
|
| 19 |
+
from scipy.spatial.distance import cdist
|
| 20 |
+
|
| 21 |
+
from . import env, util
|
| 22 |
+
from .metrics import calculate_metrics as calculate_metrics_
|
| 23 |
+
from .util import TaskType, load_json
|
| 24 |
+
|
| 25 |
+
ArrayDict = Dict[str, np.ndarray]
|
| 26 |
+
TensorDict = Dict[str, torch.Tensor]
|
| 27 |
+
|
| 28 |
+
|
| 29 |
+
CAT_MISSING_VALUE = 'nan'
|
| 30 |
+
CAT_RARE_VALUE = '__rare__'
|
| 31 |
+
Normalization = Literal['standard', 'quantile', 'minmax']
|
| 32 |
+
NumNanPolicy = Literal['drop-rows', 'mean']
|
| 33 |
+
CatNanPolicy = Literal['most_frequent']
|
| 34 |
+
CatEncoding = Literal['one-hot', 'counter']
|
| 35 |
+
YPolicy = Literal['default']
|
| 36 |
+
DEQUANT_DIST = Literal['uniform', 'beta', 'round', 'none']
|
| 37 |
+
|
| 38 |
+
|
| 39 |
+
class StandardScaler1d(StandardScaler):
|
| 40 |
+
def partial_fit(self, X, *args, **kwargs):
|
| 41 |
+
assert X.ndim == 1
|
| 42 |
+
return super().partial_fit(X[:, None], *args, **kwargs)
|
| 43 |
+
|
| 44 |
+
def transform(self, X, *args, **kwargs):
|
| 45 |
+
assert X.ndim == 1
|
| 46 |
+
return super().transform(X[:, None], *args, **kwargs).squeeze(1)
|
| 47 |
+
|
| 48 |
+
def inverse_transform(self, X, *args, **kwargs):
|
| 49 |
+
assert X.ndim == 1
|
| 50 |
+
return super().inverse_transform(X[:, None], *args, **kwargs).squeeze(1)
|
| 51 |
+
|
| 52 |
+
|
| 53 |
+
def get_category_sizes(X: Union[torch.Tensor, np.ndarray]) -> List[int]:
|
| 54 |
+
XT = X.T.cpu().tolist() if isinstance(X, torch.Tensor) else X.T.tolist()
|
| 55 |
+
return [len(set(x)) for x in XT]
|
| 56 |
+
|
| 57 |
+
|
| 58 |
+
@dataclass(frozen=False)
|
| 59 |
+
class Dataset:
|
| 60 |
+
X_num: Optional[ArrayDict]
|
| 61 |
+
X_cat: Optional[ArrayDict]
|
| 62 |
+
y: ArrayDict
|
| 63 |
+
int_col_idx_wrt_num: list
|
| 64 |
+
y_info: Dict[str, Any]
|
| 65 |
+
task_type: TaskType
|
| 66 |
+
n_classes: Optional[int]
|
| 67 |
+
|
| 68 |
+
@classmethod
|
| 69 |
+
def from_dir(cls, dir_: Union[Path, str]) -> 'Dataset':
|
| 70 |
+
dir_ = Path(dir_)
|
| 71 |
+
splits = [k for k in ['train', 'test'] if dir_.joinpath(f'y_{k}.npy').exists()]
|
| 72 |
+
|
| 73 |
+
def load(item) -> ArrayDict:
|
| 74 |
+
return {
|
| 75 |
+
x: cast(np.ndarray, np.load(dir_ / f'{item}_{x}.npy', allow_pickle=True)) # type: ignore[code]
|
| 76 |
+
for x in splits
|
| 77 |
+
}
|
| 78 |
+
|
| 79 |
+
if Path(dir_ / 'info.json').exists():
|
| 80 |
+
info = util.load_json(dir_ / 'info.json')
|
| 81 |
+
else:
|
| 82 |
+
info = None
|
| 83 |
+
return Dataset(
|
| 84 |
+
load('X_num') if dir_.joinpath('X_num_train.npy').exists() else None,
|
| 85 |
+
load('X_cat') if dir_.joinpath('X_cat_train.npy').exists() else None,
|
| 86 |
+
load('y'),
|
| 87 |
+
{},
|
| 88 |
+
TaskType(info['task_type']),
|
| 89 |
+
info.get('n_classes'),
|
| 90 |
+
)
|
| 91 |
+
|
| 92 |
+
@property
|
| 93 |
+
def is_binclass(self) -> bool:
|
| 94 |
+
return self.task_type == TaskType.BINCLASS
|
| 95 |
+
|
| 96 |
+
@property
|
| 97 |
+
def is_multiclass(self) -> bool:
|
| 98 |
+
return self.task_type == TaskType.MULTICLASS
|
| 99 |
+
|
| 100 |
+
@property
|
| 101 |
+
def is_regression(self) -> bool:
|
| 102 |
+
return self.task_type == TaskType.REGRESSION
|
| 103 |
+
|
| 104 |
+
@property
|
| 105 |
+
def n_num_features(self) -> int:
|
| 106 |
+
return 0 if self.X_num is None else self.X_num['train'].shape[1]
|
| 107 |
+
|
| 108 |
+
@property
|
| 109 |
+
def n_cat_features(self) -> int:
|
| 110 |
+
return 0 if self.X_cat is None else self.X_cat['train'].shape[1]
|
| 111 |
+
|
| 112 |
+
@property
|
| 113 |
+
def n_features(self) -> int:
|
| 114 |
+
return self.n_num_features + self.n_cat_features
|
| 115 |
+
|
| 116 |
+
def size(self, part: Optional[str]) -> int:
|
| 117 |
+
return sum(map(len, self.y.values())) if part is None else len(self.y[part])
|
| 118 |
+
|
| 119 |
+
@property
|
| 120 |
+
def nn_output_dim(self) -> int:
|
| 121 |
+
if self.is_multiclass:
|
| 122 |
+
assert self.n_classes is not None
|
| 123 |
+
return self.n_classes
|
| 124 |
+
else:
|
| 125 |
+
return 1
|
| 126 |
+
|
| 127 |
+
def get_category_sizes(self, part: str) -> List[int]:
|
| 128 |
+
return [] if self.X_cat is None else get_category_sizes(self.X_cat[part])
|
| 129 |
+
|
| 130 |
+
def calculate_metrics(
|
| 131 |
+
self,
|
| 132 |
+
predictions: Dict[str, np.ndarray],
|
| 133 |
+
prediction_type: Optional[str],
|
| 134 |
+
) -> Dict[str, Any]:
|
| 135 |
+
metrics = {
|
| 136 |
+
x: calculate_metrics_(
|
| 137 |
+
self.y[x], predictions[x], self.task_type, prediction_type, self.y_info
|
| 138 |
+
)
|
| 139 |
+
for x in predictions
|
| 140 |
+
}
|
| 141 |
+
if self.task_type == TaskType.REGRESSION:
|
| 142 |
+
score_key = 'rmse'
|
| 143 |
+
score_sign = -1
|
| 144 |
+
else:
|
| 145 |
+
score_key = 'accuracy'
|
| 146 |
+
score_sign = 1
|
| 147 |
+
for part_metrics in metrics.values():
|
| 148 |
+
part_metrics['score'] = score_sign * part_metrics[score_key]
|
| 149 |
+
return metrics
|
| 150 |
+
|
| 151 |
+
def change_val(dataset: Dataset, val_size: float = 0.2):
|
| 152 |
+
# should be done before transformations
|
| 153 |
+
|
| 154 |
+
y = np.concatenate([dataset.y['train'], dataset.y['val']], axis=0)
|
| 155 |
+
|
| 156 |
+
ixs = np.arange(y.shape[0])
|
| 157 |
+
if dataset.is_regression:
|
| 158 |
+
train_ixs, val_ixs = train_test_split(ixs, test_size=val_size, random_state=777)
|
| 159 |
+
else:
|
| 160 |
+
train_ixs, val_ixs = train_test_split(ixs, test_size=val_size, random_state=777, stratify=y)
|
| 161 |
+
|
| 162 |
+
dataset.y['train'] = y[train_ixs]
|
| 163 |
+
dataset.y['val'] = y[val_ixs]
|
| 164 |
+
|
| 165 |
+
if dataset.X_num is not None:
|
| 166 |
+
X_num = np.concatenate([dataset.X_num['train'], dataset.X_num['val']], axis=0)
|
| 167 |
+
dataset.X_num['train'] = X_num[train_ixs]
|
| 168 |
+
dataset.X_num['val'] = X_num[val_ixs]
|
| 169 |
+
|
| 170 |
+
if dataset.X_cat is not None:
|
| 171 |
+
X_cat = np.concatenate([dataset.X_cat['train'], dataset.X_cat['val']], axis=0)
|
| 172 |
+
dataset.X_cat['train'] = X_cat[train_ixs]
|
| 173 |
+
dataset.X_cat['val'] = X_cat[val_ixs]
|
| 174 |
+
|
| 175 |
+
return dataset
|
| 176 |
+
|
| 177 |
+
def num_process_nans(dataset: Dataset, policy: Optional[NumNanPolicy]) -> Dataset:
|
| 178 |
+
|
| 179 |
+
assert dataset.X_num is not None
|
| 180 |
+
nan_masks = {k: np.isnan(v) for k, v in dataset.X_num.items()}
|
| 181 |
+
if not any(x.any() for x in nan_masks.values()): # type: ignore[code]
|
| 182 |
+
# assert policy is None
|
| 183 |
+
print('No NaNs in numerical features, skipping')
|
| 184 |
+
return dataset
|
| 185 |
+
|
| 186 |
+
assert policy is not None
|
| 187 |
+
if policy == 'drop-rows':
|
| 188 |
+
valid_masks = {k: ~v.any(1) for k, v in nan_masks.items()}
|
| 189 |
+
assert valid_masks[
|
| 190 |
+
'test'
|
| 191 |
+
].all(), 'Cannot drop test rows, since this will affect the final metrics.'
|
| 192 |
+
new_data = {}
|
| 193 |
+
for data_name in ['X_num', 'X_cat', 'y']:
|
| 194 |
+
data_dict = getattr(dataset, data_name)
|
| 195 |
+
if data_dict is not None:
|
| 196 |
+
new_data[data_name] = {
|
| 197 |
+
k: v[valid_masks[k]] for k, v in data_dict.items()
|
| 198 |
+
}
|
| 199 |
+
dataset = replace(dataset, **new_data)
|
| 200 |
+
elif policy == 'mean':
|
| 201 |
+
new_values = np.nanmean(dataset.X_num['train'], axis=0)
|
| 202 |
+
X_num = deepcopy(dataset.X_num)
|
| 203 |
+
for k, v in X_num.items():
|
| 204 |
+
num_nan_indices = np.where(nan_masks[k])
|
| 205 |
+
v[num_nan_indices] = np.take(new_values, num_nan_indices[1])
|
| 206 |
+
dataset = replace(dataset, X_num=X_num)
|
| 207 |
+
else:
|
| 208 |
+
assert util.raise_unknown('policy', policy)
|
| 209 |
+
return dataset
|
| 210 |
+
|
| 211 |
+
|
| 212 |
+
# Inspired by: https://github.com/yandex-research/rtdl/blob/a4c93a32b334ef55d2a0559a4407c8306ffeeaee/lib/data.py#L20
|
| 213 |
+
def normalize(
|
| 214 |
+
X: ArrayDict, normalization: Normalization, seed: Optional[int], return_normalizer : bool = False
|
| 215 |
+
) -> ArrayDict:
|
| 216 |
+
X_train = X['train']
|
| 217 |
+
if normalization == 'standard':
|
| 218 |
+
normalizer = sklearn.preprocessing.StandardScaler()
|
| 219 |
+
elif normalization == 'minmax':
|
| 220 |
+
normalizer = sklearn.preprocessing.MinMaxScaler()
|
| 221 |
+
elif normalization == 'quantile':
|
| 222 |
+
normalizer = sklearn.preprocessing.QuantileTransformer(
|
| 223 |
+
output_distribution='normal',
|
| 224 |
+
n_quantiles=max(min(X['train'].shape[0] // 30, 1000), 10),
|
| 225 |
+
subsample=int(1e9),
|
| 226 |
+
random_state=seed,
|
| 227 |
+
)
|
| 228 |
+
# noise = 1e-3
|
| 229 |
+
# if noise > 0:
|
| 230 |
+
# assert seed is not None
|
| 231 |
+
# stds = np.std(X_train, axis=0, keepdims=True)
|
| 232 |
+
# noise_std = noise / np.maximum(stds, noise) # type: ignore[code]
|
| 233 |
+
# X_train = X_train + noise_std * np.random.default_rng(seed).standard_normal(
|
| 234 |
+
# X_train.shape
|
| 235 |
+
# )
|
| 236 |
+
else:
|
| 237 |
+
util.raise_unknown('normalization', normalization)
|
| 238 |
+
|
| 239 |
+
normalizer.fit(X_train)
|
| 240 |
+
if return_normalizer:
|
| 241 |
+
return {k: normalizer.transform(v) for k, v in X.items()}, normalizer
|
| 242 |
+
return {k: normalizer.transform(v) for k, v in X.items()}
|
| 243 |
+
|
| 244 |
+
class dequantizer:
|
| 245 |
+
def __init__(
|
| 246 |
+
self,
|
| 247 |
+
dequant_dist: DEQUANT_DIST,
|
| 248 |
+
int_col_idx_wrt_num: list,
|
| 249 |
+
int_dequant_factor: float,
|
| 250 |
+
# return_dequantizer: bool = False
|
| 251 |
+
):
|
| 252 |
+
self.dequant_dist = dequant_dist
|
| 253 |
+
self.int_col_idx_wrt_num = int_col_idx_wrt_num
|
| 254 |
+
self.int_dequant_factor = int_dequant_factor
|
| 255 |
+
def transform(self, X):
|
| 256 |
+
X_int = X[:, self.int_col_idx_wrt_num]
|
| 257 |
+
if self.dequant_dist == 'uniform':
|
| 258 |
+
X[:, self.int_col_idx_wrt_num] = X_int+ np.random.uniform(size=X_int.shape) * self.int_dequant_factor
|
| 259 |
+
elif self.dequant_dist == 'beta':
|
| 260 |
+
X[:, self.int_col_idx_wrt_num] = X_int + np.random.beta(self.int_dequant_factor, self.int_dequant_factor, size=X_int.shape) - 0.5
|
| 261 |
+
elif self.dequant_dist in ['round', 'none']:
|
| 262 |
+
pass
|
| 263 |
+
return X
|
| 264 |
+
def inverse_transform(self, X):
|
| 265 |
+
X_int = X[:, self.int_col_idx_wrt_num]
|
| 266 |
+
if self.dequant_dist == 'uniform':
|
| 267 |
+
X[:, self.int_col_idx_wrt_num] = np.floor(X_int)
|
| 268 |
+
elif self.dequant_dist == 'beta':
|
| 269 |
+
X[:, self.int_col_idx_wrt_num] = np.rint(X_int)
|
| 270 |
+
elif self.dequant_dist == 'round':
|
| 271 |
+
X[:, self.int_col_idx_wrt_num] = np.rint(X_int)
|
| 272 |
+
elif self.dequant_dist == 'none':
|
| 273 |
+
pass
|
| 274 |
+
return X
|
| 275 |
+
|
| 276 |
+
|
| 277 |
+
# if return_dequantizer:
|
| 278 |
+
# return {k: transform(v) for k, v in X.items()}, inverse_transform
|
| 279 |
+
# return {k: transform(v) for k, v in X.items()}
|
| 280 |
+
|
| 281 |
+
def cat_process_nans(X: ArrayDict, policy: Optional[CatNanPolicy]) -> ArrayDict:
|
| 282 |
+
assert X is not None
|
| 283 |
+
nan_masks = {k: v == CAT_MISSING_VALUE for k, v in X.items()}
|
| 284 |
+
if any(x.any() for x in nan_masks.values()): # type: ignore[code]
|
| 285 |
+
if policy is None:
|
| 286 |
+
X_new = X
|
| 287 |
+
elif policy == 'most_frequent':
|
| 288 |
+
imputer = SimpleImputer(missing_values=CAT_MISSING_VALUE, strategy=policy) # type: ignore[code]
|
| 289 |
+
imputer.fit(X['train'])
|
| 290 |
+
X_new = {k: cast(np.ndarray, imputer.transform(v)) for k, v in X.items()}
|
| 291 |
+
else:
|
| 292 |
+
util.raise_unknown('categorical NaN policy', policy)
|
| 293 |
+
else:
|
| 294 |
+
assert policy is None
|
| 295 |
+
X_new = X
|
| 296 |
+
return X_new
|
| 297 |
+
|
| 298 |
+
|
| 299 |
+
def cat_drop_rare(X: ArrayDict, min_frequency: float) -> ArrayDict:
|
| 300 |
+
assert 0.0 < min_frequency < 1.0
|
| 301 |
+
min_count = round(len(X['train']) * min_frequency)
|
| 302 |
+
X_new = {x: [] for x in X}
|
| 303 |
+
for column_idx in range(X['train'].shape[1]):
|
| 304 |
+
counter = Counter(X['train'][:, column_idx].tolist())
|
| 305 |
+
popular_categories = {k for k, v in counter.items() if v >= min_count}
|
| 306 |
+
for part in X_new:
|
| 307 |
+
X_new[part].append(
|
| 308 |
+
[
|
| 309 |
+
(x if x in popular_categories else CAT_RARE_VALUE)
|
| 310 |
+
for x in X[part][:, column_idx].tolist()
|
| 311 |
+
]
|
| 312 |
+
)
|
| 313 |
+
return {k: np.array(v).T for k, v in X_new.items()}
|
| 314 |
+
|
| 315 |
+
|
| 316 |
+
def cat_encode(
|
| 317 |
+
X: ArrayDict,
|
| 318 |
+
encoding: Optional[CatEncoding],
|
| 319 |
+
y_train: Optional[np.ndarray],
|
| 320 |
+
seed: Optional[int],
|
| 321 |
+
return_encoder : bool = False
|
| 322 |
+
) -> Tuple[ArrayDict, bool, Optional[Any]]: # (X, is_converted_to_numerical)
|
| 323 |
+
if encoding != 'counter':
|
| 324 |
+
y_train = None
|
| 325 |
+
|
| 326 |
+
# Step 1. Map strings to 0-based ranges
|
| 327 |
+
|
| 328 |
+
if encoding is None:
|
| 329 |
+
unknown_value = np.iinfo('int64').max - 3
|
| 330 |
+
oe = sklearn.preprocessing.OrdinalEncoder(
|
| 331 |
+
handle_unknown='use_encoded_value', # type: ignore[code]
|
| 332 |
+
unknown_value=unknown_value, # type: ignore[code]
|
| 333 |
+
dtype='int64', # type: ignore[code]
|
| 334 |
+
).fit(X['train'])
|
| 335 |
+
encoder = make_pipeline(oe)
|
| 336 |
+
encoder.fit(X['train'])
|
| 337 |
+
X = {k: encoder.transform(v) for k, v in X.items()}
|
| 338 |
+
max_values = X['train'].max(axis=0)
|
| 339 |
+
for part in X.keys():
|
| 340 |
+
if part == 'train': continue
|
| 341 |
+
for column_idx in range(X[part].shape[1]):
|
| 342 |
+
X[part][X[part][:, column_idx] == unknown_value, column_idx] = (
|
| 343 |
+
max_values[column_idx] + 1
|
| 344 |
+
)
|
| 345 |
+
if return_encoder:
|
| 346 |
+
return (X, False, encoder)
|
| 347 |
+
return (X, False)
|
| 348 |
+
|
| 349 |
+
# Step 2. Encode.
|
| 350 |
+
|
| 351 |
+
elif encoding == 'one-hot':
|
| 352 |
+
ohe = sklearn.preprocessing.OneHotEncoder(
|
| 353 |
+
handle_unknown='ignore', sparse_output=False, dtype=np.float32 # type: ignore[code]
|
| 354 |
+
)
|
| 355 |
+
encoder = make_pipeline(ohe)
|
| 356 |
+
|
| 357 |
+
# encoder.steps.append(('ohe', ohe))
|
| 358 |
+
encoder.fit(X['train'])
|
| 359 |
+
X = {k: encoder.transform(v) for k, v in X.items()}
|
| 360 |
+
|
| 361 |
+
elif encoding == 'counter':
|
| 362 |
+
assert y_train is not None
|
| 363 |
+
assert seed is not None
|
| 364 |
+
loe = LeaveOneOutEncoder(sigma=0.1, random_state=seed, return_df=False)
|
| 365 |
+
encoder.steps.append(('loe', loe))
|
| 366 |
+
encoder.fit(X['train'], y_train)
|
| 367 |
+
X = {k: encoder.transform(v).astype('float32') for k, v in X.items()} # type: ignore[code]
|
| 368 |
+
if not isinstance(X['train'], pd.DataFrame):
|
| 369 |
+
X = {k: v.values for k, v in X.items()} # type: ignore[code]
|
| 370 |
+
else:
|
| 371 |
+
util.raise_unknown('encoding', encoding)
|
| 372 |
+
|
| 373 |
+
if return_encoder:
|
| 374 |
+
return X, True, encoder # type: ignore[code]
|
| 375 |
+
return (X, True)
|
| 376 |
+
|
| 377 |
+
|
| 378 |
+
def build_target(
|
| 379 |
+
y: ArrayDict, policy: Optional[YPolicy], task_type: TaskType
|
| 380 |
+
) -> Tuple[ArrayDict, Dict[str, Any]]:
|
| 381 |
+
info: Dict[str, Any] = {'policy': policy}
|
| 382 |
+
if policy is None:
|
| 383 |
+
pass
|
| 384 |
+
elif policy == 'default':
|
| 385 |
+
if task_type == TaskType.REGRESSION:
|
| 386 |
+
mean, std = float(y['train'].mean()), float(y['train'].std())
|
| 387 |
+
y = {k: (v - mean) / std for k, v in y.items()}
|
| 388 |
+
info['mean'] = mean
|
| 389 |
+
info['std'] = std
|
| 390 |
+
else:
|
| 391 |
+
util.raise_unknown('policy', policy)
|
| 392 |
+
return y, info
|
| 393 |
+
|
| 394 |
+
|
| 395 |
+
@dataclass(frozen=True)
|
| 396 |
+
class Transformations:
|
| 397 |
+
seed: int = 0
|
| 398 |
+
normalization: Optional[Normalization] = None
|
| 399 |
+
num_nan_policy: Optional[NumNanPolicy] = None
|
| 400 |
+
cat_nan_policy: Optional[CatNanPolicy] = None
|
| 401 |
+
cat_min_frequency: Optional[float] = None
|
| 402 |
+
cat_encoding: Optional[CatEncoding] = None
|
| 403 |
+
y_policy: Optional[YPolicy] = 'default'
|
| 404 |
+
dequant_dist: Optional[DEQUANT_DIST] = None
|
| 405 |
+
int_dequant_factor: Optional[float] = 0.0
|
| 406 |
+
|
| 407 |
+
|
| 408 |
+
def transform_dataset(
|
| 409 |
+
dataset: Dataset,
|
| 410 |
+
transformations: Transformations,
|
| 411 |
+
cache_dir: Optional[Path],
|
| 412 |
+
return_transforms: bool = False
|
| 413 |
+
) -> Dataset:
|
| 414 |
+
# WARNING: the order of transformations matters. Moreover, the current
|
| 415 |
+
# implementation is not ideal in that sense.
|
| 416 |
+
if cache_dir is not None:
|
| 417 |
+
transformations_md5 = hashlib.md5(
|
| 418 |
+
str(transformations).encode('utf-8')
|
| 419 |
+
).hexdigest()
|
| 420 |
+
transformations_str = '__'.join(map(str, astuple(transformations)))
|
| 421 |
+
cache_path = (
|
| 422 |
+
cache_dir / f'cache__{transformations_str}__{transformations_md5}.pickle'
|
| 423 |
+
)
|
| 424 |
+
if cache_path.exists():
|
| 425 |
+
cache_transformations, value = util.load_pickle(cache_path)
|
| 426 |
+
if transformations == cache_transformations:
|
| 427 |
+
print(
|
| 428 |
+
f"Using cached features: {cache_dir.name + '/' + cache_path.name}"
|
| 429 |
+
)
|
| 430 |
+
return value
|
| 431 |
+
else:
|
| 432 |
+
raise RuntimeError(f'Hash collision for {cache_path}')
|
| 433 |
+
else:
|
| 434 |
+
cache_path = None
|
| 435 |
+
|
| 436 |
+
if dataset.X_num is not None:
|
| 437 |
+
dataset = num_process_nans(dataset, transformations.num_nan_policy)
|
| 438 |
+
|
| 439 |
+
num_transform = None
|
| 440 |
+
int_transform = None
|
| 441 |
+
cat_transform = None
|
| 442 |
+
X_num = dataset.X_num
|
| 443 |
+
|
| 444 |
+
int_col_idx_wrt_num = dataset.int_col_idx_wrt_num
|
| 445 |
+
if X_num is not None and int_col_idx_wrt_num and transformations.dequant_dist is not None:
|
| 446 |
+
int_transform = dequantizer(
|
| 447 |
+
transformations.dequant_dist,
|
| 448 |
+
int_col_idx_wrt_num,
|
| 449 |
+
transformations.int_dequant_factor,
|
| 450 |
+
)
|
| 451 |
+
X_num = {k: int_transform.transform(v) for k, v in X_num.items()}
|
| 452 |
+
|
| 453 |
+
if X_num is not None and transformations.normalization is not None:
|
| 454 |
+
has_num = all([x.shape[1]>0 for x in dataset.X_num.values()])
|
| 455 |
+
if has_num:
|
| 456 |
+
X_num, num_transform = normalize(
|
| 457 |
+
X_num,
|
| 458 |
+
transformations.normalization,
|
| 459 |
+
transformations.seed,
|
| 460 |
+
return_normalizer=True
|
| 461 |
+
)
|
| 462 |
+
num_transform = num_transform
|
| 463 |
+
|
| 464 |
+
if dataset.X_cat is None:
|
| 465 |
+
assert transformations.cat_nan_policy is None
|
| 466 |
+
assert transformations.cat_min_frequency is None
|
| 467 |
+
# assert transformations.cat_encoding is None
|
| 468 |
+
X_cat = None
|
| 469 |
+
else:
|
| 470 |
+
has_cat = all([x.shape[1]>0 for x in dataset.X_cat.values()])
|
| 471 |
+
if not has_cat:
|
| 472 |
+
assert transformations.cat_nan_policy is None
|
| 473 |
+
assert transformations.cat_min_frequency is None
|
| 474 |
+
X_cat = dataset.X_cat
|
| 475 |
+
for split in X_cat.keys(): # a patch to make sure that the empty array is transformed into int dtype
|
| 476 |
+
X_cat[split] = X_cat[split].astype(np.int64)
|
| 477 |
+
else:
|
| 478 |
+
X_cat = cat_process_nans(dataset.X_cat, transformations.cat_nan_policy)
|
| 479 |
+
|
| 480 |
+
if transformations.cat_min_frequency is not None:
|
| 481 |
+
X_cat = cat_drop_rare(X_cat, transformations.cat_min_frequency)
|
| 482 |
+
X_cat, is_num, cat_transform = cat_encode(
|
| 483 |
+
X_cat,
|
| 484 |
+
transformations.cat_encoding,
|
| 485 |
+
dataset.y['train'],
|
| 486 |
+
transformations.seed,
|
| 487 |
+
return_encoder=True
|
| 488 |
+
)
|
| 489 |
+
|
| 490 |
+
if is_num:
|
| 491 |
+
X_num = (
|
| 492 |
+
X_cat
|
| 493 |
+
if X_num is None
|
| 494 |
+
else {x: np.hstack([X_num[x], X_cat[x]]) for x in X_num}
|
| 495 |
+
)
|
| 496 |
+
X_cat = None
|
| 497 |
+
|
| 498 |
+
|
| 499 |
+
y, y_info = build_target(dataset.y, transformations.y_policy, dataset.task_type)
|
| 500 |
+
|
| 501 |
+
dataset = replace(dataset, X_num=X_num, X_cat=X_cat, y=y, y_info=y_info)
|
| 502 |
+
dataset.num_transform = num_transform
|
| 503 |
+
dataset.int_transform = int_transform
|
| 504 |
+
dataset.cat_transform = cat_transform
|
| 505 |
+
|
| 506 |
+
if cache_path is not None:
|
| 507 |
+
util.dump_pickle((transformations, dataset), cache_path)
|
| 508 |
+
# if return_transforms:
|
| 509 |
+
# return dataset, num_transform, cat_transform
|
| 510 |
+
return dataset
|
| 511 |
+
|
| 512 |
+
|
| 513 |
+
def build_dataset(
|
| 514 |
+
path: Union[str, Path],
|
| 515 |
+
transformations: Transformations,
|
| 516 |
+
cache: bool
|
| 517 |
+
) -> Dataset:
|
| 518 |
+
path = Path(path)
|
| 519 |
+
dataset = Dataset.from_dir(path)
|
| 520 |
+
return transform_dataset(dataset, transformations, path if cache else None)
|
| 521 |
+
|
| 522 |
+
|
| 523 |
+
def prepare_tensors(
|
| 524 |
+
dataset: Dataset, device: Union[str, torch.device]
|
| 525 |
+
) -> Tuple[Optional[TensorDict], Optional[TensorDict], TensorDict]:
|
| 526 |
+
X_num, X_cat, Y = (
|
| 527 |
+
None if x is None else {k: torch.as_tensor(v) for k, v in x.items()}
|
| 528 |
+
for x in [dataset.X_num, dataset.X_cat, dataset.y]
|
| 529 |
+
)
|
| 530 |
+
if device.type != 'cpu':
|
| 531 |
+
X_num, X_cat, Y = (
|
| 532 |
+
None if x is None else {k: v.to(device) for k, v in x.items()}
|
| 533 |
+
for x in [X_num, X_cat, Y]
|
| 534 |
+
)
|
| 535 |
+
assert X_num is not None
|
| 536 |
+
assert Y is not None
|
| 537 |
+
if not dataset.is_multiclass:
|
| 538 |
+
Y = {k: v.float() for k, v in Y.items()}
|
| 539 |
+
return X_num, X_cat, Y
|
| 540 |
+
|
| 541 |
+
###############
|
| 542 |
+
## DataLoader##
|
| 543 |
+
###############
|
| 544 |
+
|
| 545 |
+
class TabDataset(torch.utils.data.Dataset):
|
| 546 |
+
def __init__(
|
| 547 |
+
self, dataset : Dataset, split : Literal['train', 'val', 'test']
|
| 548 |
+
):
|
| 549 |
+
super().__init__()
|
| 550 |
+
|
| 551 |
+
self.X_num = torch.from_numpy(dataset.X_num[split]) if dataset.X_num is not None else None
|
| 552 |
+
self.X_cat = torch.from_numpy(dataset.X_cat[split]) if dataset.X_cat is not None else None
|
| 553 |
+
self.y = torch.from_numpy(dataset.y[split])
|
| 554 |
+
|
| 555 |
+
assert self.y is not None
|
| 556 |
+
assert self.X_num is not None or self.X_cat is not None
|
| 557 |
+
|
| 558 |
+
def __len__(self):
|
| 559 |
+
return len(self.y)
|
| 560 |
+
|
| 561 |
+
def __getitem__(self, idx):
|
| 562 |
+
out_dict = {
|
| 563 |
+
'y': self.y[idx].long() if self.y is not None else None,
|
| 564 |
+
}
|
| 565 |
+
|
| 566 |
+
x = np.empty((0,))
|
| 567 |
+
if self.X_num is not None:
|
| 568 |
+
x = self.X_num[idx]
|
| 569 |
+
if self.X_cat is not None:
|
| 570 |
+
x = torch.cat([x, self.X_cat[idx]], dim=0)
|
| 571 |
+
return x.float(), out_dict
|
| 572 |
+
|
| 573 |
+
def prepare_dataloader(
|
| 574 |
+
dataset : Dataset,
|
| 575 |
+
split : str,
|
| 576 |
+
batch_size: int,
|
| 577 |
+
):
|
| 578 |
+
|
| 579 |
+
torch_dataset = TabDataset(dataset, split)
|
| 580 |
+
loader = torch.utils.data.DataLoader(
|
| 581 |
+
torch_dataset,
|
| 582 |
+
batch_size=batch_size,
|
| 583 |
+
shuffle=(split == 'train'),
|
| 584 |
+
num_workers=1,
|
| 585 |
+
)
|
| 586 |
+
while True:
|
| 587 |
+
yield from loader
|
| 588 |
+
|
| 589 |
+
def prepare_torch_dataloader(
|
| 590 |
+
dataset : Dataset,
|
| 591 |
+
split : str,
|
| 592 |
+
shuffle : bool,
|
| 593 |
+
batch_size: int,
|
| 594 |
+
) -> torch.utils.data.DataLoader:
|
| 595 |
+
|
| 596 |
+
torch_dataset = TabDataset(dataset, split)
|
| 597 |
+
loader = torch.utils.data.DataLoader(torch_dataset, batch_size=batch_size, shuffle=shuffle, num_workers=1)
|
| 598 |
+
|
| 599 |
+
return loader
|
| 600 |
+
|
| 601 |
+
def dataset_from_csv(paths : Dict[str, str], cat_features, target, T):
|
| 602 |
+
assert 'train' in paths
|
| 603 |
+
y = {}
|
| 604 |
+
X_num = {}
|
| 605 |
+
X_cat = {} if len(cat_features) else None
|
| 606 |
+
for split in paths.keys():
|
| 607 |
+
df = pd.read_csv(paths[split])
|
| 608 |
+
y[split] = df[target].to_numpy().astype(float)
|
| 609 |
+
if X_cat is not None:
|
| 610 |
+
X_cat[split] = df[cat_features].to_numpy().astype(str)
|
| 611 |
+
X_num[split] = df.drop(cat_features + [target], axis=1).to_numpy().astype(float)
|
| 612 |
+
|
| 613 |
+
dataset = Dataset(X_num, X_cat, y, {}, None, len(np.unique(y['train'])))
|
| 614 |
+
return transform_dataset(dataset, T, None)
|
| 615 |
+
|
| 616 |
+
class FastTensorDataLoader:
|
| 617 |
+
"""
|
| 618 |
+
A DataLoader-like object for a set of tensors that can be much faster than
|
| 619 |
+
TensorDataset + DataLoader because dataloader grabs individual indices of
|
| 620 |
+
the dataset and calls cat (slow).
|
| 621 |
+
Source: https://discuss.pytorch.org/t/dataloader-much-slower-than-manual-batching/27014/6
|
| 622 |
+
"""
|
| 623 |
+
def __init__(self, *tensors, batch_size=32, shuffle=False):
|
| 624 |
+
"""
|
| 625 |
+
Initialize a FastTensorDataLoader.
|
| 626 |
+
:param *tensors: tensors to store. Must have the same length @ dim 0.
|
| 627 |
+
:param batch_size: batch size to load.
|
| 628 |
+
:param shuffle: if True, shuffle the data *in-place* whenever an
|
| 629 |
+
iterator is created out of this object.
|
| 630 |
+
:returns: A FastTensorDataLoader.
|
| 631 |
+
"""
|
| 632 |
+
assert all(t.shape[0] == tensors[0].shape[0] for t in tensors)
|
| 633 |
+
self.tensors = tensors
|
| 634 |
+
|
| 635 |
+
self.dataset_len = self.tensors[0].shape[0]
|
| 636 |
+
self.batch_size = batch_size
|
| 637 |
+
self.shuffle = shuffle
|
| 638 |
+
|
| 639 |
+
# Calculate # batches
|
| 640 |
+
n_batches, remainder = divmod(self.dataset_len, self.batch_size)
|
| 641 |
+
if remainder > 0:
|
| 642 |
+
n_batches += 1
|
| 643 |
+
self.n_batches = n_batches
|
| 644 |
+
def __iter__(self):
|
| 645 |
+
if self.shuffle:
|
| 646 |
+
r = torch.randperm(self.dataset_len)
|
| 647 |
+
self.tensors = [t[r] for t in self.tensors]
|
| 648 |
+
self.i = 0
|
| 649 |
+
return self
|
| 650 |
+
|
| 651 |
+
def __next__(self):
|
| 652 |
+
if self.i >= self.dataset_len:
|
| 653 |
+
raise StopIteration
|
| 654 |
+
batch = tuple(t[self.i:self.i+self.batch_size] for t in self.tensors)
|
| 655 |
+
self.i += self.batch_size
|
| 656 |
+
return batch
|
| 657 |
+
|
| 658 |
+
def __len__(self):
|
| 659 |
+
return self.n_batches
|
| 660 |
+
|
| 661 |
+
def prepare_fast_dataloader(
|
| 662 |
+
D : Dataset,
|
| 663 |
+
split : str,
|
| 664 |
+
batch_size: int
|
| 665 |
+
):
|
| 666 |
+
|
| 667 |
+
X = torch.from_numpy(np.concatenate([D.X_num[split], D.X_cat[split]], axis=1)).float()
|
| 668 |
+
dataloader = FastTensorDataLoader(X, batch_size=batch_size, shuffle=(split=='train'))
|
| 669 |
+
while True:
|
| 670 |
+
yield from dataloader
|
| 671 |
+
|
| 672 |
+
def prepare_fast_torch_dataloader(
|
| 673 |
+
D : Dataset,
|
| 674 |
+
split : str,
|
| 675 |
+
batch_size: int
|
| 676 |
+
):
|
| 677 |
+
if D.X_cat is not None:
|
| 678 |
+
X = torch.from_numpy(np.concatenate([D.X_num[split], D.X_cat[split]], axis=1)).float()
|
| 679 |
+
else:
|
| 680 |
+
X = torch.from_numpy(D.X_num[split]).float()
|
| 681 |
+
y = torch.from_numpy(D.y[split])
|
| 682 |
+
dataloader = FastTensorDataLoader(X, y, batch_size=batch_size, shuffle=(split=='train'))
|
| 683 |
+
return dataloader
|
| 684 |
+
|
| 685 |
+
def round_columns(X_real, X_synth, columns):
|
| 686 |
+
for col in columns:
|
| 687 |
+
uniq = np.unique(X_real[:,col])
|
| 688 |
+
dist = cdist(X_synth[:, col][:, np.newaxis].astype(float), uniq[:, np.newaxis].astype(float))
|
| 689 |
+
X_synth[:, col] = uniq[dist.argmin(axis=1)]
|
| 690 |
+
return X_synth
|
| 691 |
+
|
| 692 |
+
def concat_features(D : Dataset):
|
| 693 |
+
if D.X_num is None:
|
| 694 |
+
assert D.X_cat is not None
|
| 695 |
+
X = {k: pd.DataFrame(v, columns=range(D.n_features)) for k, v in D.X_cat.items()}
|
| 696 |
+
elif D.X_cat is None:
|
| 697 |
+
assert D.X_num is not None
|
| 698 |
+
X = {k: pd.DataFrame(v, columns=range(D.n_features)) for k, v in D.X_num.items()}
|
| 699 |
+
else:
|
| 700 |
+
X = {
|
| 701 |
+
part: pd.concat(
|
| 702 |
+
[
|
| 703 |
+
pd.DataFrame(D.X_num[part], columns=range(D.n_num_features)),
|
| 704 |
+
pd.DataFrame(
|
| 705 |
+
D.X_cat[part],
|
| 706 |
+
columns=range(D.n_num_features, D.n_features),
|
| 707 |
+
),
|
| 708 |
+
],
|
| 709 |
+
axis=1,
|
| 710 |
+
)
|
| 711 |
+
for part in D.y.keys()
|
| 712 |
+
}
|
| 713 |
+
|
| 714 |
+
return X
|
| 715 |
+
|
| 716 |
+
def concat_to_pd(X_num, X_cat, y):
|
| 717 |
+
if X_num is None:
|
| 718 |
+
return pd.concat([
|
| 719 |
+
pd.DataFrame(X_cat, columns=list(range(X_cat.shape[1]))),
|
| 720 |
+
pd.DataFrame(y, columns=['y'])
|
| 721 |
+
], axis=1)
|
| 722 |
+
if X_cat is not None:
|
| 723 |
+
return pd.concat([
|
| 724 |
+
pd.DataFrame(X_num, columns=list(range(X_num.shape[1]))),
|
| 725 |
+
pd.DataFrame(X_cat, columns=list(range(X_num.shape[1], X_num.shape[1] + X_cat.shape[1]))),
|
| 726 |
+
pd.DataFrame(y, columns=['y'])
|
| 727 |
+
], axis=1)
|
| 728 |
+
return pd.concat([
|
| 729 |
+
pd.DataFrame(X_num, columns=list(range(X_num.shape[1]))),
|
| 730 |
+
pd.DataFrame(y, columns=['y'])
|
| 731 |
+
], axis=1)
|
| 732 |
+
|
| 733 |
+
def read_pure_data(path, split='train'):
|
| 734 |
+
y = np.load(os.path.join(path, f'y_{split}.npy'), allow_pickle=True)
|
| 735 |
+
X_num = None
|
| 736 |
+
X_cat = None
|
| 737 |
+
if os.path.exists(os.path.join(path, f'X_num_{split}.npy')):
|
| 738 |
+
X_num = np.load(os.path.join(path, f'X_num_{split}.npy'), allow_pickle=True)
|
| 739 |
+
if os.path.exists(os.path.join(path, f'X_cat_{split}.npy')):
|
| 740 |
+
X_cat = np.load(os.path.join(path, f'X_cat_{split}.npy'), allow_pickle=True)
|
| 741 |
+
|
| 742 |
+
return X_num, X_cat, y
|
| 743 |
+
|
| 744 |
+
def read_changed_val(path, val_size=0.2):
|
| 745 |
+
path = Path(path)
|
| 746 |
+
X_num_train, X_cat_train, y_train = read_pure_data(path, 'train')
|
| 747 |
+
X_num_val, X_cat_val, y_val = read_pure_data(path, 'val')
|
| 748 |
+
is_regression = load_json(path / 'info.json')['task_type'] == 'regression'
|
| 749 |
+
|
| 750 |
+
y = np.concatenate([y_train, y_val], axis=0)
|
| 751 |
+
|
| 752 |
+
ixs = np.arange(y.shape[0])
|
| 753 |
+
if is_regression:
|
| 754 |
+
train_ixs, val_ixs = train_test_split(ixs, test_size=val_size, random_state=777)
|
| 755 |
+
else:
|
| 756 |
+
train_ixs, val_ixs = train_test_split(ixs, test_size=val_size, random_state=777, stratify=y)
|
| 757 |
+
y_train = y[train_ixs]
|
| 758 |
+
y_val = y[val_ixs]
|
| 759 |
+
|
| 760 |
+
if X_num_train is not None:
|
| 761 |
+
X_num = np.concatenate([X_num_train, X_num_val], axis=0)
|
| 762 |
+
X_num_train = X_num[train_ixs]
|
| 763 |
+
X_num_val = X_num[val_ixs]
|
| 764 |
+
|
| 765 |
+
if X_cat_train is not None:
|
| 766 |
+
X_cat = np.concatenate([X_cat_train, X_cat_val], axis=0)
|
| 767 |
+
X_cat_train = X_cat[train_ixs]
|
| 768 |
+
X_cat_val = X_cat[val_ixs]
|
| 769 |
+
|
| 770 |
+
return X_num_train, X_cat_train, y_train, X_num_val, X_cat_val, y_val
|
| 771 |
+
|
| 772 |
+
#############
|
| 773 |
+
|
| 774 |
+
def load_dataset_info(dataset_dir_name: str) -> Dict[str, Any]:
|
| 775 |
+
path = Path("data/" + dataset_dir_name)
|
| 776 |
+
info = util.load_json(path / 'info.json')
|
| 777 |
+
info['size'] = info['train_size'] + info['val_size'] + info['test_size']
|
| 778 |
+
info['n_features'] = info['n_num_features'] + info['n_cat_features']
|
| 779 |
+
info['path'] = path
|
| 780 |
+
return info
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/src/env.py
ADDED
|
@@ -0,0 +1,39 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""
|
| 2 |
+
Have not used in TabDDPM project.
|
| 3 |
+
"""
|
| 4 |
+
|
| 5 |
+
import datetime
|
| 6 |
+
import os
|
| 7 |
+
import shutil
|
| 8 |
+
import typing as ty
|
| 9 |
+
from pathlib import Path
|
| 10 |
+
|
| 11 |
+
PROJ = Path('tab-ddpm/').absolute().resolve()
|
| 12 |
+
EXP = PROJ / 'exp'
|
| 13 |
+
DATA = PROJ / 'data'
|
| 14 |
+
|
| 15 |
+
|
| 16 |
+
def get_path(path: ty.Union[str, Path]) -> Path:
|
| 17 |
+
if isinstance(path, str):
|
| 18 |
+
path = Path(path)
|
| 19 |
+
if not path.is_absolute():
|
| 20 |
+
path = PROJ / path
|
| 21 |
+
return path.resolve()
|
| 22 |
+
|
| 23 |
+
|
| 24 |
+
def get_relative_path(path: ty.Union[str, Path]) -> Path:
|
| 25 |
+
return get_path(path).relative_to(PROJ)
|
| 26 |
+
|
| 27 |
+
|
| 28 |
+
def duplicate_path(
|
| 29 |
+
src: ty.Union[str, Path], alternative_project_dir: ty.Union[str, Path]
|
| 30 |
+
) -> None:
|
| 31 |
+
src = get_path(src)
|
| 32 |
+
alternative_project_dir = get_path(alternative_project_dir)
|
| 33 |
+
dst = alternative_project_dir / src.relative_to(PROJ)
|
| 34 |
+
dst.parent.mkdir(parents=True, exist_ok=True)
|
| 35 |
+
if dst.exists():
|
| 36 |
+
dst = dst.with_name(
|
| 37 |
+
dst.name + '_' + datetime.datetime.now().strftime('%Y%m%dT%H%M%S')
|
| 38 |
+
)
|
| 39 |
+
(shutil.copytree if src.is_dir() else shutil.copyfile)(src, dst)
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/src/metrics.py
ADDED
|
@@ -0,0 +1,157 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import enum
|
| 2 |
+
from typing import Any, Optional, Tuple, Dict, Union, cast
|
| 3 |
+
from functools import partial
|
| 4 |
+
|
| 5 |
+
import numpy as np
|
| 6 |
+
import scipy.special
|
| 7 |
+
import sklearn.metrics as skm
|
| 8 |
+
|
| 9 |
+
from . import util
|
| 10 |
+
from .util import TaskType
|
| 11 |
+
|
| 12 |
+
|
| 13 |
+
class PredictionType(enum.Enum):
|
| 14 |
+
LOGITS = 'logits'
|
| 15 |
+
PROBS = 'probs'
|
| 16 |
+
|
| 17 |
+
class MetricsReport:
|
| 18 |
+
def __init__(self, report: dict, task_type: TaskType):
|
| 19 |
+
self._res = {k: {} for k in report.keys()}
|
| 20 |
+
if task_type in (TaskType.BINCLASS, TaskType.MULTICLASS):
|
| 21 |
+
self._metrics_names = ["acc", "f1"]
|
| 22 |
+
for k in report.keys():
|
| 23 |
+
self._res[k]["acc"] = report[k]["accuracy"]
|
| 24 |
+
self._res[k]["f1"] = report[k]["macro avg"]["f1-score"]
|
| 25 |
+
if task_type == TaskType.BINCLASS:
|
| 26 |
+
self._res[k]["roc_auc"] = report[k]["roc_auc"]
|
| 27 |
+
self._metrics_names.append("roc_auc")
|
| 28 |
+
|
| 29 |
+
elif task_type == TaskType.REGRESSION:
|
| 30 |
+
self._metrics_names = ["r2", "rmse"]
|
| 31 |
+
for k in report.keys():
|
| 32 |
+
self._res[k]["r2"] = report[k]["r2"]
|
| 33 |
+
self._res[k]["rmse"] = report[k]["rmse"]
|
| 34 |
+
else:
|
| 35 |
+
raise "Unknown TaskType!"
|
| 36 |
+
|
| 37 |
+
def get_splits_names(self) -> list[str]:
|
| 38 |
+
return self._res.keys()
|
| 39 |
+
|
| 40 |
+
def get_metrics_names(self) -> list[str]:
|
| 41 |
+
return self._metrics_names
|
| 42 |
+
|
| 43 |
+
def get_metric(self, split: str, metric: str) -> float:
|
| 44 |
+
return self._res[split][metric]
|
| 45 |
+
|
| 46 |
+
def get_val_score(self) -> float:
|
| 47 |
+
return self._res["val"]["r2"] if "r2" in self._res["val"] else self._res["val"]["f1"]
|
| 48 |
+
|
| 49 |
+
def get_test_score(self) -> float:
|
| 50 |
+
return self._res["test"]["r2"] if "r2" in self._res["test"] else self._res["test"]["f1"]
|
| 51 |
+
|
| 52 |
+
def print_metrics(self) -> None:
|
| 53 |
+
res = {
|
| 54 |
+
"val": {k: np.around(self._res["val"][k], 4) for k in self._res["val"]},
|
| 55 |
+
"test": {k: np.around(self._res["test"][k], 4) for k in self._res["test"]}
|
| 56 |
+
}
|
| 57 |
+
|
| 58 |
+
print("*"*100)
|
| 59 |
+
print("[val]")
|
| 60 |
+
print(res["val"])
|
| 61 |
+
print("[test]")
|
| 62 |
+
print(res["test"])
|
| 63 |
+
|
| 64 |
+
return res
|
| 65 |
+
|
| 66 |
+
class SeedsMetricsReport:
|
| 67 |
+
def __init__(self):
|
| 68 |
+
self._reports = []
|
| 69 |
+
|
| 70 |
+
def add_report(self, report: MetricsReport) -> None:
|
| 71 |
+
self._reports.append(report)
|
| 72 |
+
|
| 73 |
+
def get_mean_std(self) -> dict:
|
| 74 |
+
res = {k: {} for k in ["train", "val", "test"]}
|
| 75 |
+
for split in self._reports[0].get_splits_names():
|
| 76 |
+
for metric in self._reports[0].get_metrics_names():
|
| 77 |
+
res[split][metric] = [x.get_metric(split, metric) for x in self._reports]
|
| 78 |
+
|
| 79 |
+
agg_res = {k: {} for k in ["train", "val", "test"]}
|
| 80 |
+
for split in self._reports[0].get_splits_names():
|
| 81 |
+
for metric in self._reports[0].get_metrics_names():
|
| 82 |
+
for k, f in [("count", len), ("mean", np.mean), ("std", np.std)]:
|
| 83 |
+
agg_res[split][f"{metric}-{k}"] = f(res[split][metric])
|
| 84 |
+
self._res = res
|
| 85 |
+
self._agg_res = agg_res
|
| 86 |
+
|
| 87 |
+
return agg_res
|
| 88 |
+
|
| 89 |
+
def print_result(self) -> dict:
|
| 90 |
+
res = {split: {k: float(np.around(self._agg_res[split][k], 4)) for k in self._agg_res[split]} for split in ["val", "test"]}
|
| 91 |
+
print("="*100)
|
| 92 |
+
print("EVAL RESULTS:")
|
| 93 |
+
print("[val]")
|
| 94 |
+
print(res["val"])
|
| 95 |
+
print("[test]")
|
| 96 |
+
print(res["test"])
|
| 97 |
+
print("="*100)
|
| 98 |
+
return res
|
| 99 |
+
|
| 100 |
+
def calculate_rmse(
|
| 101 |
+
y_true: np.ndarray, y_pred: np.ndarray, std = None) -> float:
|
| 102 |
+
rmse = skm.mean_squared_error(y_true, y_pred) ** 0.5
|
| 103 |
+
if std is not None:
|
| 104 |
+
rmse *= std
|
| 105 |
+
return rmse
|
| 106 |
+
|
| 107 |
+
|
| 108 |
+
def _get_labels_and_probs(
|
| 109 |
+
y_pred: np.ndarray, task_type: TaskType, prediction_type: Optional[PredictionType]
|
| 110 |
+
) -> Tuple[np.ndarray, Optional[np.ndarray]]:
|
| 111 |
+
assert task_type in (TaskType.BINCLASS, TaskType.MULTICLASS)
|
| 112 |
+
|
| 113 |
+
if prediction_type is None:
|
| 114 |
+
return y_pred, None
|
| 115 |
+
|
| 116 |
+
if prediction_type == PredictionType.LOGITS:
|
| 117 |
+
probs = (
|
| 118 |
+
scipy.special.expit(y_pred)
|
| 119 |
+
if task_type == TaskType.BINCLASS
|
| 120 |
+
else scipy.special.softmax(y_pred, axis=1)
|
| 121 |
+
)
|
| 122 |
+
elif prediction_type == PredictionType.PROBS:
|
| 123 |
+
probs = y_pred
|
| 124 |
+
else:
|
| 125 |
+
util.raise_unknown('prediction_type', prediction_type)
|
| 126 |
+
|
| 127 |
+
assert probs is not None
|
| 128 |
+
labels = np.round(probs) if task_type == TaskType.BINCLASS else probs.argmax(axis=1)
|
| 129 |
+
return labels.astype('int64'), probs
|
| 130 |
+
|
| 131 |
+
|
| 132 |
+
def calculate_metrics(
|
| 133 |
+
y_true: np.ndarray,
|
| 134 |
+
y_pred: np.ndarray,
|
| 135 |
+
task_type: Union[str, TaskType],
|
| 136 |
+
prediction_type: Optional[Union[str, PredictionType]],
|
| 137 |
+
y_info: Dict[str, Any],
|
| 138 |
+
) -> Dict[str, Any]:
|
| 139 |
+
# Example: calculate_metrics(y_true, y_pred, 'binclass', 'logits', {})
|
| 140 |
+
task_type = TaskType(task_type)
|
| 141 |
+
if prediction_type is not None:
|
| 142 |
+
prediction_type = PredictionType(prediction_type)
|
| 143 |
+
|
| 144 |
+
if task_type == TaskType.REGRESSION:
|
| 145 |
+
assert prediction_type is None
|
| 146 |
+
assert 'std' in y_info
|
| 147 |
+
rmse = calculate_rmse(y_true, y_pred, y_info['std'])
|
| 148 |
+
r2 = skm.r2_score(y_true, y_pred)
|
| 149 |
+
result = {'rmse': rmse, 'r2': r2}
|
| 150 |
+
else:
|
| 151 |
+
labels, probs = _get_labels_and_probs(y_pred, task_type, prediction_type)
|
| 152 |
+
result = cast(
|
| 153 |
+
Dict[str, Any], skm.classification_report(y_true, labels, output_dict=True)
|
| 154 |
+
)
|
| 155 |
+
if task_type == TaskType.BINCLASS:
|
| 156 |
+
result['roc_auc'] = skm.roc_auc_score(y_true, probs)
|
| 157 |
+
return result
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/src/util.py
ADDED
|
@@ -0,0 +1,347 @@
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|
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|
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|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import argparse
|
| 2 |
+
import atexit
|
| 3 |
+
import enum
|
| 4 |
+
import json
|
| 5 |
+
import os
|
| 6 |
+
import pickle
|
| 7 |
+
import shutil
|
| 8 |
+
import sys
|
| 9 |
+
import time
|
| 10 |
+
import uuid
|
| 11 |
+
from copy import deepcopy
|
| 12 |
+
from dataclasses import asdict, fields, is_dataclass
|
| 13 |
+
from pathlib import Path
|
| 14 |
+
from pprint import pprint
|
| 15 |
+
from typing import Any, Callable, List, Dict, Type, Optional, Tuple, TypeVar, Union, cast, get_args, get_origin
|
| 16 |
+
|
| 17 |
+
import __main__
|
| 18 |
+
import numpy as np
|
| 19 |
+
import tomli
|
| 20 |
+
import tomli_w
|
| 21 |
+
import torch
|
| 22 |
+
import typing as ty
|
| 23 |
+
|
| 24 |
+
from . import env
|
| 25 |
+
|
| 26 |
+
RawConfig = Dict[str, Any]
|
| 27 |
+
Report = Dict[str, Any]
|
| 28 |
+
T = TypeVar('T')
|
| 29 |
+
|
| 30 |
+
|
| 31 |
+
class Part(enum.Enum):
|
| 32 |
+
TRAIN = 'train'
|
| 33 |
+
VAL = 'val'
|
| 34 |
+
TEST = 'test'
|
| 35 |
+
|
| 36 |
+
def __str__(self) -> str:
|
| 37 |
+
return self.value
|
| 38 |
+
|
| 39 |
+
|
| 40 |
+
class TaskType(enum.Enum):
|
| 41 |
+
BINCLASS = 'binclass'
|
| 42 |
+
MULTICLASS = 'multiclass'
|
| 43 |
+
REGRESSION = 'regression'
|
| 44 |
+
|
| 45 |
+
def __str__(self) -> str:
|
| 46 |
+
return self.value
|
| 47 |
+
|
| 48 |
+
|
| 49 |
+
|
| 50 |
+
def update_training_log(training_log, data, metrics):
|
| 51 |
+
def _update(log_part, data_part):
|
| 52 |
+
for k, v in data_part.items():
|
| 53 |
+
if isinstance(v, dict):
|
| 54 |
+
_update(log_part.setdefault(k, {}), v)
|
| 55 |
+
elif isinstance(v, list):
|
| 56 |
+
log_part.setdefault(k, []).extend(v)
|
| 57 |
+
else:
|
| 58 |
+
log_part.setdefault(k, []).append(v)
|
| 59 |
+
|
| 60 |
+
_update(training_log, data)
|
| 61 |
+
transposed_metrics = {}
|
| 62 |
+
for part, part_metrics in metrics.items():
|
| 63 |
+
for metric_name, value in part_metrics.items():
|
| 64 |
+
transposed_metrics.setdefault(metric_name, {})[part] = value
|
| 65 |
+
_update(training_log, transposed_metrics)
|
| 66 |
+
|
| 67 |
+
|
| 68 |
+
def raise_unknown(unknown_what: str, unknown_value: Any):
|
| 69 |
+
raise ValueError(f'Unknown {unknown_what}: {unknown_value}')
|
| 70 |
+
|
| 71 |
+
|
| 72 |
+
def _replace(data, condition, value):
|
| 73 |
+
def do(x):
|
| 74 |
+
if isinstance(x, dict):
|
| 75 |
+
return {k: do(v) for k, v in x.items()}
|
| 76 |
+
elif isinstance(x, list):
|
| 77 |
+
return [do(y) for y in x]
|
| 78 |
+
else:
|
| 79 |
+
return value if condition(x) else x
|
| 80 |
+
|
| 81 |
+
return do(data)
|
| 82 |
+
|
| 83 |
+
|
| 84 |
+
_CONFIG_NONE = '__none__'
|
| 85 |
+
|
| 86 |
+
|
| 87 |
+
def unpack_config(config: RawConfig) -> RawConfig:
|
| 88 |
+
config = cast(RawConfig, _replace(config, lambda x: x == _CONFIG_NONE, None))
|
| 89 |
+
return config
|
| 90 |
+
|
| 91 |
+
|
| 92 |
+
def pack_config(config: RawConfig) -> RawConfig:
|
| 93 |
+
config = cast(RawConfig, _replace(config, lambda x: x is None, _CONFIG_NONE))
|
| 94 |
+
return config
|
| 95 |
+
|
| 96 |
+
|
| 97 |
+
def load_config(path: Union[Path, str]) -> Any:
|
| 98 |
+
with open(path, 'rb') as f:
|
| 99 |
+
return unpack_config(tomli.load(f))
|
| 100 |
+
|
| 101 |
+
|
| 102 |
+
def dump_config(config: Any, path: Union[Path, str]) -> None:
|
| 103 |
+
with open(path, 'wb') as f:
|
| 104 |
+
tomli_w.dump(pack_config(config), f)
|
| 105 |
+
# check that there are no bugs in all these "pack/unpack" things
|
| 106 |
+
assert config == load_config(path)
|
| 107 |
+
|
| 108 |
+
|
| 109 |
+
def load_json(path: Union[Path, str], **kwargs) -> Any:
|
| 110 |
+
return json.loads(Path(path).read_text(), **kwargs)
|
| 111 |
+
|
| 112 |
+
|
| 113 |
+
def dump_json(x: Any, path: Union[Path, str], **kwargs) -> None:
|
| 114 |
+
kwargs.setdefault('indent', 4)
|
| 115 |
+
Path(path).write_text(json.dumps(x, **kwargs) + '\n')
|
| 116 |
+
|
| 117 |
+
|
| 118 |
+
def load_pickle(path: Union[Path, str], **kwargs) -> Any:
|
| 119 |
+
return pickle.loads(Path(path).read_bytes(), **kwargs)
|
| 120 |
+
|
| 121 |
+
|
| 122 |
+
def dump_pickle(x: Any, path: Union[Path, str], **kwargs) -> None:
|
| 123 |
+
Path(path).write_bytes(pickle.dumps(x, **kwargs))
|
| 124 |
+
|
| 125 |
+
|
| 126 |
+
def load(path: Union[Path, str], **kwargs) -> Any:
|
| 127 |
+
return globals()[f'load_{Path(path).suffix[1:]}'](Path(path), **kwargs)
|
| 128 |
+
|
| 129 |
+
|
| 130 |
+
def dump(x: Any, path: Union[Path, str], **kwargs) -> Any:
|
| 131 |
+
return globals()[f'dump_{Path(path).suffix[1:]}'](x, Path(path), **kwargs)
|
| 132 |
+
|
| 133 |
+
|
| 134 |
+
def _get_output_item_path(
|
| 135 |
+
path: Union[str, Path], filename: str, must_exist: bool
|
| 136 |
+
) -> Path:
|
| 137 |
+
path = env.get_path(path)
|
| 138 |
+
if path.suffix == '.toml':
|
| 139 |
+
path = path.with_suffix('')
|
| 140 |
+
if path.is_dir():
|
| 141 |
+
path = path / filename
|
| 142 |
+
else:
|
| 143 |
+
assert path.name == filename
|
| 144 |
+
assert path.parent.exists()
|
| 145 |
+
if must_exist:
|
| 146 |
+
assert path.exists()
|
| 147 |
+
return path
|
| 148 |
+
|
| 149 |
+
|
| 150 |
+
def load_report(path: Path) -> Report:
|
| 151 |
+
return load_json(_get_output_item_path(path, 'report.json', True))
|
| 152 |
+
|
| 153 |
+
|
| 154 |
+
def dump_report(report: dict, path: Path) -> None:
|
| 155 |
+
dump_json(report, _get_output_item_path(path, 'report.json', False))
|
| 156 |
+
|
| 157 |
+
|
| 158 |
+
def load_predictions(path: Path) -> Dict[str, np.ndarray]:
|
| 159 |
+
with np.load(_get_output_item_path(path, 'predictions.npz', True)) as predictions:
|
| 160 |
+
return {x: predictions[x] for x in predictions}
|
| 161 |
+
|
| 162 |
+
|
| 163 |
+
def dump_predictions(predictions: Dict[str, np.ndarray], path: Path) -> None:
|
| 164 |
+
np.savez(_get_output_item_path(path, 'predictions.npz', False), **predictions)
|
| 165 |
+
|
| 166 |
+
|
| 167 |
+
def dump_metrics(metrics: Dict[str, Any], path: Path) -> None:
|
| 168 |
+
dump_json(metrics, _get_output_item_path(path, 'metrics.json', False))
|
| 169 |
+
|
| 170 |
+
|
| 171 |
+
def load_checkpoint(path: Path, *args, **kwargs) -> Dict[str, np.ndarray]:
|
| 172 |
+
return torch.load(
|
| 173 |
+
_get_output_item_path(path, 'checkpoint.pt', True), *args, **kwargs
|
| 174 |
+
)
|
| 175 |
+
|
| 176 |
+
|
| 177 |
+
def get_device() -> torch.device:
|
| 178 |
+
if torch.cuda.is_available():
|
| 179 |
+
assert os.environ.get('CUDA_VISIBLE_DEVICES') is not None
|
| 180 |
+
return torch.device('cuda:0')
|
| 181 |
+
else:
|
| 182 |
+
return torch.device('cpu')
|
| 183 |
+
|
| 184 |
+
|
| 185 |
+
def _print_sep(c, size=100):
|
| 186 |
+
print(c * size)
|
| 187 |
+
|
| 188 |
+
|
| 189 |
+
_LAST_SNAPSHOT_TIME = None
|
| 190 |
+
|
| 191 |
+
|
| 192 |
+
def backup_output(output_dir: Path) -> None:
|
| 193 |
+
backup_dir = os.environ.get('TMP_OUTPUT_PATH')
|
| 194 |
+
snapshot_dir = os.environ.get('SNAPSHOT_PATH')
|
| 195 |
+
if backup_dir is None:
|
| 196 |
+
assert snapshot_dir is None
|
| 197 |
+
return
|
| 198 |
+
assert snapshot_dir is not None
|
| 199 |
+
|
| 200 |
+
try:
|
| 201 |
+
relative_output_dir = output_dir.relative_to(env.PROJ)
|
| 202 |
+
except ValueError:
|
| 203 |
+
return
|
| 204 |
+
|
| 205 |
+
for dir_ in [backup_dir, snapshot_dir]:
|
| 206 |
+
new_output_dir = dir_ / relative_output_dir
|
| 207 |
+
prev_backup_output_dir = new_output_dir.with_name(new_output_dir.name + '_prev')
|
| 208 |
+
new_output_dir.parent.mkdir(exist_ok=True, parents=True)
|
| 209 |
+
if new_output_dir.exists():
|
| 210 |
+
new_output_dir.rename(prev_backup_output_dir)
|
| 211 |
+
shutil.copytree(output_dir, new_output_dir)
|
| 212 |
+
# the case for evaluate.py which automatically creates configs
|
| 213 |
+
if output_dir.with_suffix('.toml').exists():
|
| 214 |
+
shutil.copyfile(
|
| 215 |
+
output_dir.with_suffix('.toml'), new_output_dir.with_suffix('.toml')
|
| 216 |
+
)
|
| 217 |
+
if prev_backup_output_dir.exists():
|
| 218 |
+
shutil.rmtree(prev_backup_output_dir)
|
| 219 |
+
|
| 220 |
+
global _LAST_SNAPSHOT_TIME
|
| 221 |
+
if _LAST_SNAPSHOT_TIME is None or time.time() - _LAST_SNAPSHOT_TIME > 10 * 60:
|
| 222 |
+
import nirvana_dl.snapshot # type: ignore[code]
|
| 223 |
+
|
| 224 |
+
nirvana_dl.snapshot.dump_snapshot()
|
| 225 |
+
_LAST_SNAPSHOT_TIME = time.time()
|
| 226 |
+
print('The snapshot was saved!')
|
| 227 |
+
|
| 228 |
+
|
| 229 |
+
def _get_scores(metrics: Dict[str, Dict[str, Any]]) -> Optional[Dict[str, float]]:
|
| 230 |
+
return (
|
| 231 |
+
{k: v['score'] for k, v in metrics.items()}
|
| 232 |
+
if 'score' in next(iter(metrics.values()))
|
| 233 |
+
else None
|
| 234 |
+
)
|
| 235 |
+
|
| 236 |
+
|
| 237 |
+
def format_scores(metrics: Dict[str, Dict[str, Any]]) -> str:
|
| 238 |
+
return ' '.join(
|
| 239 |
+
f"[{x}] {metrics[x]['score']:.3f}"
|
| 240 |
+
for x in ['test', 'val', 'train']
|
| 241 |
+
if x in metrics
|
| 242 |
+
)
|
| 243 |
+
|
| 244 |
+
|
| 245 |
+
def finish(output_dir: Path, report: dict) -> None:
|
| 246 |
+
print()
|
| 247 |
+
_print_sep('=')
|
| 248 |
+
|
| 249 |
+
metrics = report.get('metrics')
|
| 250 |
+
if metrics is not None:
|
| 251 |
+
scores = _get_scores(metrics)
|
| 252 |
+
if scores is not None:
|
| 253 |
+
dump_json(scores, output_dir / 'scores.json')
|
| 254 |
+
print(format_scores(metrics))
|
| 255 |
+
_print_sep('-')
|
| 256 |
+
|
| 257 |
+
dump_report(report, output_dir)
|
| 258 |
+
json_output_path = os.environ.get('JSON_OUTPUT_FILE')
|
| 259 |
+
if json_output_path:
|
| 260 |
+
try:
|
| 261 |
+
key = str(output_dir.relative_to(env.PROJ))
|
| 262 |
+
except ValueError:
|
| 263 |
+
pass
|
| 264 |
+
else:
|
| 265 |
+
json_output_path = Path(json_output_path)
|
| 266 |
+
try:
|
| 267 |
+
json_data = json.loads(json_output_path.read_text())
|
| 268 |
+
except (FileNotFoundError, json.decoder.JSONDecodeError):
|
| 269 |
+
json_data = {}
|
| 270 |
+
json_data[key] = load_json(output_dir / 'report.json')
|
| 271 |
+
json_output_path.write_text(json.dumps(json_data, indent=4))
|
| 272 |
+
shutil.copyfile(
|
| 273 |
+
json_output_path,
|
| 274 |
+
os.path.join(os.environ['SNAPSHOT_PATH'], 'json_output.json'),
|
| 275 |
+
)
|
| 276 |
+
|
| 277 |
+
output_dir.joinpath('DONE').touch()
|
| 278 |
+
backup_output(output_dir)
|
| 279 |
+
print(f'Done! | {report.get("time")} | {output_dir}')
|
| 280 |
+
_print_sep('=')
|
| 281 |
+
print()
|
| 282 |
+
|
| 283 |
+
|
| 284 |
+
def from_dict(datacls: Type[T], data: dict) -> T:
|
| 285 |
+
assert is_dataclass(datacls)
|
| 286 |
+
data = deepcopy(data)
|
| 287 |
+
for field in fields(datacls):
|
| 288 |
+
if field.name not in data:
|
| 289 |
+
continue
|
| 290 |
+
if is_dataclass(field.type):
|
| 291 |
+
data[field.name] = from_dict(field.type, data[field.name])
|
| 292 |
+
elif (
|
| 293 |
+
get_origin(field.type) is Union
|
| 294 |
+
and len(get_args(field.type)) == 2
|
| 295 |
+
and get_args(field.type)[1] is type(None)
|
| 296 |
+
and is_dataclass(get_args(field.type)[0])
|
| 297 |
+
):
|
| 298 |
+
if data[field.name] is not None:
|
| 299 |
+
data[field.name] = from_dict(get_args(field.type)[0], data[field.name])
|
| 300 |
+
return datacls(**data)
|
| 301 |
+
|
| 302 |
+
|
| 303 |
+
def replace_factor_with_value(
|
| 304 |
+
config: RawConfig,
|
| 305 |
+
key: str,
|
| 306 |
+
reference_value: int,
|
| 307 |
+
bounds: Tuple[float, float],
|
| 308 |
+
) -> None:
|
| 309 |
+
factor_key = key + '_factor'
|
| 310 |
+
if factor_key not in config:
|
| 311 |
+
assert key in config
|
| 312 |
+
else:
|
| 313 |
+
assert key not in config
|
| 314 |
+
factor = config.pop(factor_key)
|
| 315 |
+
assert bounds[0] <= factor <= bounds[1]
|
| 316 |
+
config[key] = int(factor * reference_value)
|
| 317 |
+
|
| 318 |
+
|
| 319 |
+
def get_temporary_copy(path: Union[str, Path]) -> Path:
|
| 320 |
+
path = env.get_path(path)
|
| 321 |
+
assert not path.is_dir() and not path.is_symlink()
|
| 322 |
+
tmp_path = path.with_name(
|
| 323 |
+
path.stem + '___' + str(uuid.uuid4()).replace('-', '') + path.suffix
|
| 324 |
+
)
|
| 325 |
+
shutil.copyfile(path, tmp_path)
|
| 326 |
+
atexit.register(lambda: tmp_path.unlink())
|
| 327 |
+
return tmp_path
|
| 328 |
+
|
| 329 |
+
|
| 330 |
+
def get_python():
|
| 331 |
+
python = Path('python3.9')
|
| 332 |
+
return str(python) if python.exists() else 'python'
|
| 333 |
+
|
| 334 |
+
def get_catboost_config(real_data_path, is_cv=False):
|
| 335 |
+
ds_name = Path(real_data_path).name
|
| 336 |
+
C = load_json(f'tuned_models/catboost/{ds_name}_cv.json')
|
| 337 |
+
return C
|
| 338 |
+
|
| 339 |
+
def get_categories(X_train_cat):
|
| 340 |
+
return (
|
| 341 |
+
None
|
| 342 |
+
if X_train_cat is None
|
| 343 |
+
else [
|
| 344 |
+
len(set(X_train_cat[:, i]))
|
| 345 |
+
for i in range(X_train_cat.shape[1])
|
| 346 |
+
]
|
| 347 |
+
)
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/synthcity.yaml
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
name: synthcity
|
| 2 |
+
channels:
|
| 3 |
+
- pytorch
|
| 4 |
+
- nvidia
|
| 5 |
+
- defaults
|
| 6 |
+
dependencies:
|
| 7 |
+
- python=3.10
|
| 8 |
+
- pip
|
| 9 |
+
- pip:
|
| 10 |
+
- synthcity
|
| 11 |
+
- category_encoders
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/synthetic/pipeline_c19/real.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:092346325db7f445db2c00d2f5dd9a8397ecc33eaba7b2b14d9d48d92659fcfc
|
| 3 |
+
size 51459027
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/synthetic/pipeline_c19/test.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:fd9c98343a92c7b1afe63b402f07b9a55013adbfcc60ec1e17d5e026385eeec8
|
| 3 |
+
size 6304860
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/synthetic/pipeline_c19/val.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:69c75639e81916d3b4f2a28db38d7e15c78e442748aa5bf9fed2eb3784912a70
|
| 3 |
+
size 6331589
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff.yaml
ADDED
|
@@ -0,0 +1,35 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
name: tabdiff
|
| 2 |
+
channels:
|
| 3 |
+
- pytorch
|
| 4 |
+
- nvidia
|
| 5 |
+
- defaults
|
| 6 |
+
dependencies:
|
| 7 |
+
- python=3.10
|
| 8 |
+
- pytorch=2.0.1
|
| 9 |
+
- torchvision==0.15.2
|
| 10 |
+
- torchaudio==2.0.2
|
| 11 |
+
- pytorch-cuda=11.7
|
| 12 |
+
- numpy<2
|
| 13 |
+
- pip
|
| 14 |
+
- pip:
|
| 15 |
+
- pandas
|
| 16 |
+
- scikit-learn
|
| 17 |
+
- scipy
|
| 18 |
+
- icecream
|
| 19 |
+
- xlrd
|
| 20 |
+
- tomli-w
|
| 21 |
+
- tomli==2.0.1
|
| 22 |
+
- category_encoders
|
| 23 |
+
- imbalanced-learn
|
| 24 |
+
- kaggle
|
| 25 |
+
- transformers
|
| 26 |
+
- datasets
|
| 27 |
+
- peft==0.9.0
|
| 28 |
+
- ml_collections
|
| 29 |
+
- sdmetrics
|
| 30 |
+
- prdc
|
| 31 |
+
- rdt
|
| 32 |
+
- openpyxl
|
| 33 |
+
- xgboost
|
| 34 |
+
- wandb==0.17.3
|
| 35 |
+
- kaleido
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff/ckpt/pipeline_c19/adapter_learnable/config.pkl
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:0c2187811b2ca3b6157a99c23d4030ba5acfae5e78a8b37010dc2108fdde8b58
|
| 3 |
+
size 1447
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff/ckpt/pipeline_c19/adapter_learnable/ema_model_200.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:1036982df1bab02f1ce920a737ffbca53f92c8d4fb99bbafa007707400696793
|
| 3 |
+
size 44012991
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff/ckpt/pipeline_c19/adapter_learnable/model_200.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:293c33dfcf0042cd083ef5e0f4a5737bda8e4f4027d7fe7b67103e0314d28f17
|
| 3 |
+
size 44013323
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff/configs/tabdiff_configs.toml
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:38eff74ecb572c9baafc5e912f8b5421cae686ddb4df6e3bc2a9b69c6ec69cd6
|
| 3 |
+
size 1234
|
SynthData0523/main/c19/tabdiff/tabdiff-c19-20260512_231303/_tabdiff_runtime/tabdiff/main.py
ADDED
|
@@ -0,0 +1,331 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
+
import glob
|
| 2 |
+
import json
|
| 3 |
+
import os
|
| 4 |
+
import pickle
|
| 5 |
+
import random
|
| 6 |
+
|
| 7 |
+
import numpy as np
|
| 8 |
+
from tabdiff.metrics import TabMetrics
|
| 9 |
+
from tabdiff.modules.main_modules import UniModMLP
|
| 10 |
+
from tabdiff.modules.main_modules import Model
|
| 11 |
+
from tabdiff.models.unified_ctime_diffusion import UnifiedCtimeDiffusion
|
| 12 |
+
from tabdiff.trainer import Trainer
|
| 13 |
+
import src
|
| 14 |
+
import torch
|
| 15 |
+
|
| 16 |
+
from torch.utils.data import DataLoader
|
| 17 |
+
import argparse
|
| 18 |
+
import warnings
|
| 19 |
+
|
| 20 |
+
import wandb
|
| 21 |
+
|
| 22 |
+
from copy import deepcopy
|
| 23 |
+
|
| 24 |
+
from utils_train import TabDiffDataset
|
| 25 |
+
|
| 26 |
+
warnings.filterwarnings('ignore')
|
| 27 |
+
|
| 28 |
+
|
| 29 |
+
def main(args):
|
| 30 |
+
device = args.device
|
| 31 |
+
|
| 32 |
+
## Disable scientific numerical format
|
| 33 |
+
np.set_printoptions(suppress=True)
|
| 34 |
+
torch.set_printoptions(sci_mode=False)
|
| 35 |
+
|
| 36 |
+
## Get data info
|
| 37 |
+
dataname = args.dataname
|
| 38 |
+
data_dir = f'data/{dataname}'
|
| 39 |
+
info_path = f'data/{dataname}/info.json'
|
| 40 |
+
with open(info_path, 'r') as f:
|
| 41 |
+
info = json.load(f)
|
| 42 |
+
|
| 43 |
+
## Set up flags
|
| 44 |
+
is_dcr = 'dcr' in dataname
|
| 45 |
+
|
| 46 |
+
## Set experiment name
|
| 47 |
+
exp_name = args.exp_name
|
| 48 |
+
if args.exp_name is None:
|
| 49 |
+
exp_name = 'non_learnable_schedule' if args.non_learnable_schedule else 'learnable_schedule'
|
| 50 |
+
exp_name += '_y_only' if args.y_only else ''
|
| 51 |
+
|
| 52 |
+
## Load configs
|
| 53 |
+
curr_dir = os.path.dirname(os.path.abspath(__file__))
|
| 54 |
+
config_path = f'{curr_dir}/configs/tabdiff_configs.toml'
|
| 55 |
+
raw_config = src.load_config(config_path)
|
| 56 |
+
|
| 57 |
+
print(f"{args.mode.capitalize()} Mode is Enabled")
|
| 58 |
+
num_samples_to_generate = None
|
| 59 |
+
ckpt_path = None
|
| 60 |
+
if args.mode == 'train':
|
| 61 |
+
print("NEW training is started")
|
| 62 |
+
elif args.mode == 'test':
|
| 63 |
+
num_samples_to_generate = args.num_samples_to_generate
|
| 64 |
+
ckpt_path = args.ckpt_path
|
| 65 |
+
if ckpt_path is None:
|
| 66 |
+
ckpt_parent_path = f"{curr_dir}/ckpt/{dataname}/{exp_name}"
|
| 67 |
+
ckpt_path_arr = glob.glob(f"{ckpt_parent_path}/best_ema_model*")
|
| 68 |
+
assert ckpt_path_arr, f"Cannot not infer ckpt_path from {ckpt_parent_path}, please make sure that you first train a model before testing!"
|
| 69 |
+
ckpt_path = ckpt_path_arr[0]
|
| 70 |
+
config_path = os.path.join(os.path.dirname(ckpt_path), 'config.pkl')
|
| 71 |
+
if os.path.exists(config_path):
|
| 72 |
+
with open(config_path, 'rb') as f:
|
| 73 |
+
cached_raw_config = pickle.load(f)
|
| 74 |
+
print(f"Found cached config at {config_path}")
|
| 75 |
+
raw_config = cached_raw_config
|
| 76 |
+
|
| 77 |
+
|
| 78 |
+
## Creat model_save and result paths
|
| 79 |
+
model_save_path, result_save_path = None, None
|
| 80 |
+
if args.mode == 'train':
|
| 81 |
+
model_save_path = 'debug/ckpt' if args.debug else f'{curr_dir}/ckpt/{dataname}/{exp_name}'
|
| 82 |
+
result_save_path = model_save_path.replace('ckpt', 'result') #i.e., f'{curr_dir}/results/{dataname}/{exp_name}'
|
| 83 |
+
elif args.mode == 'test':
|
| 84 |
+
if args.report:
|
| 85 |
+
result_save_path = f"eval/report_runs/{exp_name}/{dataname}"
|
| 86 |
+
else:
|
| 87 |
+
result_save_path = os.path.dirname(ckpt_path).replace('ckpt', 'result') # infer the exp_name from the ckpt_name
|
| 88 |
+
raw_config['model_save_path'] = model_save_path
|
| 89 |
+
raw_config['result_save_path'] = result_save_path
|
| 90 |
+
if model_save_path is not None:
|
| 91 |
+
if not os.path.exists(model_save_path):
|
| 92 |
+
os.makedirs(model_save_path)
|
| 93 |
+
if result_save_path is not None:
|
| 94 |
+
if not os.path.exists(result_save_path):
|
| 95 |
+
os.makedirs(result_save_path)
|
| 96 |
+
|
| 97 |
+
## Make everything determinstic if needed
|
| 98 |
+
raw_config['deterministic'] = args.deterministic
|
| 99 |
+
if args.deterministic:
|
| 100 |
+
print("DETERMINISTIC MODE is enabled!!!")
|
| 101 |
+
## Set global random seeds
|
| 102 |
+
torch.manual_seed(0)
|
| 103 |
+
random.seed(0)
|
| 104 |
+
np.random.seed(0)
|
| 105 |
+
|
| 106 |
+
## Ensure deterministic CUDA operations
|
| 107 |
+
os.environ['PYTHONHASHSEED'] = '0'
|
| 108 |
+
os.environ['CUBLAS_WORKSPACE_CONFIG'] = ':4096:8' # or ':16:8'
|
| 109 |
+
torch.use_deterministic_algorithms(True)
|
| 110 |
+
if torch.cuda.is_available():
|
| 111 |
+
torch.cuda.manual_seed(0)
|
| 112 |
+
torch.cuda.manual_seed_all(0)
|
| 113 |
+
torch.backends.cudnn.deterministic = True
|
| 114 |
+
torch.backends.cudnn.benchmark = False
|
| 115 |
+
|
| 116 |
+
## Set debug mode parameters
|
| 117 |
+
if args.debug: # fast eval for DEBUG mode
|
| 118 |
+
raw_config['train']['main']['check_val_every'] = 2
|
| 119 |
+
raw_config['diffusion_params']['num_timesteps'] = 4
|
| 120 |
+
raw_config['train']['main']['batch_size'] = 4096
|
| 121 |
+
raw_config['sample']['batch_size'] = 10000
|
| 122 |
+
|
| 123 |
+
# CI /镜像冒烟:覆盖训练步数(默认不设置)
|
| 124 |
+
_smoke_steps = os.environ.get("TABDIFF_SMOKE_STEPS", "").strip()
|
| 125 |
+
if _smoke_steps and args.mode == "train":
|
| 126 |
+
n = max(1, int(_smoke_steps))
|
| 127 |
+
raw_config["train"]["main"]["steps"] = n
|
| 128 |
+
raw_config["train"]["main"]["check_val_every"] = max(1, min(n, raw_config["train"]["main"]["check_val_every"]))
|
| 129 |
+
# Pipeline 适配器:避免小步数训练时在中途频繁做生成评测;仅在最后一轮 checkpoint
|
| 130 |
+
if os.environ.get("TABDIFF_ADAPTER_TRAIN", "").strip() and args.mode == "train":
|
| 131 |
+
raw_config["train"]["main"]["check_val_every"] = int(raw_config["train"]["main"]["steps"])
|
| 132 |
+
|
| 133 |
+
## Load training data
|
| 134 |
+
batch_size = raw_config['train']['main']['batch_size']
|
| 135 |
+
|
| 136 |
+
train_data = TabDiffDataset(dataname, data_dir, info, y_only=args.y_only, isTrain=True, dequant_dist=raw_config['data']['dequant_dist'], int_dequant_factor=raw_config['data']['int_dequant_factor'])
|
| 137 |
+
train_loader = DataLoader(
|
| 138 |
+
train_data,
|
| 139 |
+
batch_size = batch_size,
|
| 140 |
+
shuffle = True,
|
| 141 |
+
num_workers = 4,
|
| 142 |
+
)
|
| 143 |
+
d_numerical, categories = train_data.d_numerical, train_data.categories
|
| 144 |
+
|
| 145 |
+
val_data = TabDiffDataset(dataname, data_dir, info, y_only=args.y_only, isTrain=False, dequant_dist=raw_config['data']['dequant_dist'], int_dequant_factor=raw_config['data']['int_dequant_factor'])
|
| 146 |
+
|
| 147 |
+
## Load Metrics
|
| 148 |
+
real_data_path = f'synthetic/{dataname}/real.csv'
|
| 149 |
+
test_data_path = f'synthetic/{dataname}/test.csv'
|
| 150 |
+
val_data_path = f'synthetic/{dataname}/val.csv'
|
| 151 |
+
if not os.path.exists(val_data_path):
|
| 152 |
+
print(f"{args.dataname} does not have its validation set. During MLE evaluation, a validation set will be splitted from the training set!")
|
| 153 |
+
val_data_path = None
|
| 154 |
+
if args.mode == 'train':
|
| 155 |
+
metric_list = ["density"]
|
| 156 |
+
else:
|
| 157 |
+
if is_dcr:
|
| 158 |
+
metric_list = ["dcr"]
|
| 159 |
+
else:
|
| 160 |
+
metric_list = [
|
| 161 |
+
"density",
|
| 162 |
+
"mle",
|
| 163 |
+
"c2st",
|
| 164 |
+
]
|
| 165 |
+
metrics = TabMetrics(real_data_path, test_data_path, val_data_path, info, device, metric_list=metric_list)
|
| 166 |
+
|
| 167 |
+
## Load the module and models
|
| 168 |
+
raw_config['unimodmlp_params']['d_numerical'] = d_numerical
|
| 169 |
+
raw_config['unimodmlp_params']['categories'] = (categories+1).tolist() # add one for the mask category
|
| 170 |
+
if args.y_only:
|
| 171 |
+
raw_config['unimodmlp_params']['use_mlp'] = False # drop the mlp when training the unconditional model
|
| 172 |
+
raw_config['unimodmlp_params']['dim_t'] = 128 #reduce the size of the mlp
|
| 173 |
+
main_model_path = args.ckpt_path
|
| 174 |
+
if main_model_path is None:
|
| 175 |
+
main_model_parent_path = f"{curr_dir}/ckpt/{dataname}/{exp_name.replace('_y_only', '')}"
|
| 176 |
+
main_model_path_arr = glob.glob(f"{main_model_parent_path}/best_ema_model*")
|
| 177 |
+
assert main_model_path_arr, f"Cannot not infer the main model's ckpt_path from {main_model_parent_path}, please make sure that you first train a main model before training the y_only model!"
|
| 178 |
+
main_model_path = main_model_path_arr[0]
|
| 179 |
+
main_model_configs = pickle.load(open(os.path.join(os.path.dirname(main_model_path), 'config.pkl'), 'rb'))
|
| 180 |
+
if main_model_configs['diffusion_params']['scheduler'] == "power_mean_per_column": # if learnable schedule is enabled in the main model, we need to infer noise params of the target column from the main model ckpt and train the y_only model with those params
|
| 181 |
+
from tabdiff.models.noise_schedule import PowerMeanNoise_PerColumn, LogLinearNoise_PerColumn
|
| 182 |
+
if info['task_type'] == 'regression':
|
| 183 |
+
noise_schedule = PowerMeanNoise_PerColumn(
|
| 184 |
+
num_numerical=main_model_configs['unimodmlp_params']['d_numerical'],
|
| 185 |
+
**main_model_configs['diffusion_params']['noise_schedule_params']
|
| 186 |
+
)
|
| 187 |
+
raw_config['diffusion_params']['noise_schedule_params']['rho'] = noise_schedule.rho()[0].item() # the target col is placed at the first position
|
| 188 |
+
else:
|
| 189 |
+
noise_schedule = LogLinearNoise_PerColumn(
|
| 190 |
+
num_categories=len(main_model_configs['unimodmlp_params']['categories']),
|
| 191 |
+
**main_model_configs['diffusion_params']['noise_schedule_params']
|
| 192 |
+
)
|
| 193 |
+
raw_config['diffusion_params']['noise_schedule_params']['k'] = noise_schedule.k()[0].item() # the target col is placed at the first position
|
| 194 |
+
|
| 195 |
+
backbone = UniModMLP(
|
| 196 |
+
**raw_config['unimodmlp_params']
|
| 197 |
+
)
|
| 198 |
+
model = Model(backbone, **raw_config['diffusion_params']['edm_params'])
|
| 199 |
+
model.to(device)
|
| 200 |
+
|
| 201 |
+
## Create and load y_only_model for imputation
|
| 202 |
+
y_only_model = None
|
| 203 |
+
if args.impute:
|
| 204 |
+
y_only_model_path = args.y_only_model_path
|
| 205 |
+
if y_only_model_path is None:
|
| 206 |
+
y_only_model_parent_path = f"{curr_dir}/ckpt/{dataname}/{exp_name}_y_only"
|
| 207 |
+
y_only_model_path_arr = glob.glob(f"{y_only_model_parent_path}/best_ema_model*")
|
| 208 |
+
assert y_only_model_path_arr, f"Cannot not infer y_only model's ckpt_path from {y_only_model_parent_path}, please make sure that you first train a y_only model before testing imputation!"
|
| 209 |
+
y_only_model_path = y_only_model_path_arr[0]
|
| 210 |
+
y_only_model_config_path = os.path.join(os.path.dirname(y_only_model_path), 'config.pkl')
|
| 211 |
+
with open(y_only_model_config_path, 'rb') as f:
|
| 212 |
+
y_only_model_config = pickle.load(f)
|
| 213 |
+
y_only_model = UniModMLP(
|
| 214 |
+
**y_only_model_config['unimodmlp_params']
|
| 215 |
+
)
|
| 216 |
+
y_only_model = Model(y_only_model, **y_only_model_config['diffusion_params']['edm_params'])
|
| 217 |
+
y_only_model.to(device)
|
| 218 |
+
# load weights
|
| 219 |
+
state_dicts = torch.load(y_only_model_path, map_location=device)
|
| 220 |
+
y_only_model.load_state_dict(state_dicts['denoise_fn'])
|
| 221 |
+
|
| 222 |
+
if not args.y_only and not args.non_learnable_schedule:
|
| 223 |
+
raw_config['diffusion_params']['scheduler'] = 'power_mean_per_column'
|
| 224 |
+
raw_config['diffusion_params']['cat_scheduler'] = 'log_linear_per_column'
|
| 225 |
+
diffusion = UnifiedCtimeDiffusion(
|
| 226 |
+
num_classes=categories,
|
| 227 |
+
num_numerical_features=d_numerical,
|
| 228 |
+
denoise_fn=model,
|
| 229 |
+
y_only_model=y_only_model,
|
| 230 |
+
**raw_config['diffusion_params'],
|
| 231 |
+
device=device,
|
| 232 |
+
)
|
| 233 |
+
num_params = sum(p.numel() for p in diffusion.parameters())
|
| 234 |
+
print("The number of parameters = ", num_params)
|
| 235 |
+
diffusion.to(device)
|
| 236 |
+
diffusion.train()
|
| 237 |
+
|
| 238 |
+
## Print the configs
|
| 239 |
+
printed_configs = json.dumps(raw_config, default=lambda x: int(x) if isinstance(x, np.int64) else x, indent=4)
|
| 240 |
+
print(f"The config of the current run is : \n {printed_configs}")
|
| 241 |
+
|
| 242 |
+
## Enable Wandb
|
| 243 |
+
project_name = f"tabdiff_{dataname}"
|
| 244 |
+
raw_config['project_name'] = project_name
|
| 245 |
+
logger = wandb.init(
|
| 246 |
+
project=raw_config['project_name'],
|
| 247 |
+
name=exp_name,
|
| 248 |
+
config=raw_config,
|
| 249 |
+
mode='disabled' if args.debug or args.no_wandb else 'online',
|
| 250 |
+
)
|
| 251 |
+
|
| 252 |
+
## Load Trainer
|
| 253 |
+
sample_batch_size = raw_config['sample']['batch_size']
|
| 254 |
+
trainer = Trainer(
|
| 255 |
+
diffusion,
|
| 256 |
+
train_loader,
|
| 257 |
+
train_data,
|
| 258 |
+
val_data,
|
| 259 |
+
metrics,
|
| 260 |
+
logger,
|
| 261 |
+
**raw_config['train']['main'],
|
| 262 |
+
sample_batch_size=sample_batch_size,
|
| 263 |
+
num_samples_to_generate=num_samples_to_generate,
|
| 264 |
+
model_save_path=raw_config['model_save_path'],
|
| 265 |
+
result_save_path=raw_config['result_save_path'],
|
| 266 |
+
device=device,
|
| 267 |
+
ckpt_path=ckpt_path,
|
| 268 |
+
y_only=args.y_only
|
| 269 |
+
)
|
| 270 |
+
if args.mode == 'test':
|
| 271 |
+
if args.report:
|
| 272 |
+
if is_dcr:
|
| 273 |
+
trainer.report_test_dcr(args.num_runs)
|
| 274 |
+
else:
|
| 275 |
+
trainer.report_test(args.num_runs)
|
| 276 |
+
elif args.impute:
|
| 277 |
+
imputed_sample_save_dir = f"impute/{dataname}/{exp_name}"
|
| 278 |
+
trainer.test_impute(
|
| 279 |
+
args.trial_start, args.trial_size,
|
| 280 |
+
args.resample_rounds,
|
| 281 |
+
args.impute_condition,
|
| 282 |
+
imputed_sample_save_dir,
|
| 283 |
+
args.w_num,
|
| 284 |
+
args.w_cat,
|
| 285 |
+
)
|
| 286 |
+
else:
|
| 287 |
+
trainer.test()
|
| 288 |
+
else:
|
| 289 |
+
## Save config
|
| 290 |
+
config_save_path = raw_config['model_save_path']
|
| 291 |
+
with open (os.path.join(config_save_path, 'config.pkl'), 'wb') as f:
|
| 292 |
+
pickle.dump(raw_config, f)
|
| 293 |
+
trainer.run_loop()
|
| 294 |
+
|
| 295 |
+
|
| 296 |
+
|
| 297 |
+
if __name__ == '__main__':
|
| 298 |
+
|
| 299 |
+
parser = argparse.ArgumentParser(description='Training of TabDiff')
|
| 300 |
+
|
| 301 |
+
parser.add_argument('--dataname', type=str, default='adult', help='Name of dataset.')
|
| 302 |
+
parser.add_argument('--gpu', type=int, default=0, help='GPU index.')
|
| 303 |
+
parser.add_argument('--mode', type=str, default='train', choices=['train', 'test'])
|
| 304 |
+
parser.add_argument('--debug', action='store_true')
|
| 305 |
+
parser.add_argument('--no_wandb', action='store_true')
|
| 306 |
+
parser.add_argument('--deterministic', action='store_true')
|
| 307 |
+
parser.add_argument('--exp_name', type=str, default=None)
|
| 308 |
+
parser.add_argument('--non_learnable_schedule', action='store_true')
|
| 309 |
+
parser.add_argument('--y_only', action='store_true')
|
| 310 |
+
parser.add_argument('--ckpt_path', type=str, default=None)
|
| 311 |
+
parser.add_argument('--num_samples_to_generate', type=int, default=None)
|
| 312 |
+
parser.add_argument('--report', action='store_true')
|
| 313 |
+
parser.add_argument('--num_runs', type=int, default=20)
|
| 314 |
+
parser.add_argument('--impute', action='store_true')
|
| 315 |
+
parser.add_argument('--trial_start', type=int, default=0)
|
| 316 |
+
parser.add_argument('--trial_size', type=int, default=100)
|
| 317 |
+
parser.add_argument('--resample_rounds', type=int, default=1)
|
| 318 |
+
parser.add_argument('--impute_condition', type=str, default='')
|
| 319 |
+
parser.add_argument('--w_num', type=float, default=1.0)
|
| 320 |
+
parser.add_argument('--w_cat', type=float, default=1.0)
|
| 321 |
+
parser.add_argument('--y_only_model_path', type=str, default=None)
|
| 322 |
+
|
| 323 |
+
args = parser.parse_args()
|
| 324 |
+
|
| 325 |
+
# check cuda
|
| 326 |
+
if args.gpu != -1 and torch.cuda.is_available():
|
| 327 |
+
args.device = f'cuda:{args.gpu}'
|
| 328 |
+
else:
|
| 329 |
+
args.device = 'cpu'
|
| 330 |
+
|
| 331 |
+
main(args)
|