{ "environment": { "distributions": { "biopython": "1.88", "datasets": "5.0.1", "esm": "3.4.0", "huggingface_hub": "0.36.2", "numpy": "2.2.6", "pandas": "3.0.5", "pyarrow": "25.0.1", "scikit_learn": "1.9.0", "scipy": "1.18.1", "statsmodels": "0.14.6", "torch": "2.11.0+cu128", "transformers": "4.57.6", "wandb": "0.28.2" }, "platform": { "description": "Linux-6.8.0-1046-nvidia-64k-aarch64-with-glibc2.35", "machine": "aarch64", "release": "6.8.0-1046-nvidia-64k", "system": "Linux" }, "python": { "compiler": "Clang 22.1.3 ", "implementation": "CPython", "version": "3.12.14" } }, "lock": { "bundled_path": "software/requirements-analysis-py312-cu128.lock.txt", "sha256": "11c3ced98a8d7c16d7884961c8246671b3faebd66e9925029a246fcfbdfd8fe1", "size_bytes": 3216, "source_path": "requirements-analysis-py312-cu128.lock.txt" }, "project": { "distribution": "annotation-vocabulary", "installed_version": "0.1.0", "version": "0.1.0" }, "schema": "annotation-vocabulary-software-v1", "source": { "archive": { "bundled_path": "software/source_snapshot.tar.gz", "format": "tar.gz-normalized-v1", "sha256": "46be750e5f4a41a64ba0a0a7fc7599dedfc131d3dfff0e3f867c997321de694d", "size_bytes": 214525 }, "git": { "commit": null, "fallback_reason": "not_a_git_repository", "software_tree_clean": null }, "identity": { "kind": "source_tree_sha256", "value": "da8c070252a22dbf3b55b8d9acbd155d01ffe434150b776aff6276fd446debcf" }, "tree": { "algorithm": "sha256-canonical-json-v1", "file_count": 71, "files": [ { "path": "LICENSE", "sha256": "67274289cf985e244efb80ef006d642a15b397abe5c59ec763ac79de045f370b", "size_bytes": 1091 }, { "path": "MANIFEST.in", "sha256": "71314f8e1dd2984c2af01c518da1c318396a8f634ef0a92c68a7990ac7062707", "size_bytes": 242 }, { "path": "README.md", "sha256": "0cf194a7595d130025098073d03ec79703a9a096933f16c25574ecfc8dc33660", "size_bytes": 7683 }, { "path": "config/source_pins_2026_02.json", "sha256": "743d4022ce44906d2b33df488a3b183c4062c85bb4526ce70651c826cd3541a3", "size_bytes": 3335 }, { "path": "pyproject.toml", "sha256": "9210ee93e4977aa55a83470aa67f0765f92cc6163a7e639e654312b1491d6976", "size_bytes": 1305 }, { "path": "requirements-analysis-py312-cu128.lock.txt", "sha256": "11c3ced98a8d7c16d7884961c8246671b3faebd66e9925029a246fcfbdfd8fe1", "size_bytes": 3216 }, { "path": "scripts/analyze_gene3d_interpro.py", "sha256": "10a88e67b6b4f174b789b34336cb35bbca3cc2900709bfdff7c334ac291abe3b", "size_bytes": 200 }, { "path": "scripts/audit_go_unresolved.py", "sha256": "4083e9167a204555a64a54bbae61866403cbd8ff8964bac2470c2e8d2e1c6ac8", "size_bytes": 2743 }, { "path": "scripts/audit_legacy_migration.py", "sha256": "14f232a1d5b0626accb10bfd24b10ec246cbe58db7ea806cec74dfc2886e988c", "size_bytes": 8434 }, { "path": "scripts/manifest_existing_mmseqs_run.py", "sha256": "40143009193b58c8c815ef66bbc5cd64cf9c73461630323b3e1a6157e8e47ebc", "size_bytes": 12464 }, { "path": "src/annotation_vocabulary/__init__.py", "sha256": "d255b9bf91ad7d8f36421736d462c6f1ff7f34a5a92215271868563b5a0dee9b", "size_bytes": 372 }, { "path": "src/annotation_vocabulary/analysis/__init__.py", "sha256": "41e82cc9acca3659fed8bd618b8340236801e0d29bd56fa5691f5d0b3b10ba77", "size_bytes": 256 }, { "path": "src/annotation_vocabulary/analysis/association.py", "sha256": "3ec1931868e754c9d753488cccb1e6efd9b7e55767a4b8d2bfe1e67fd24eca70", "size_bytes": 14630 }, { "path": "src/annotation_vocabulary/analysis/biohub.py", "sha256": "45e8ffc8e6b3a9d10c6b50eadf001cd38b80ed3cdad08673c2d3cc939a62e559", "size_bytes": 11296 }, { "path": "src/annotation_vocabulary/analysis/extraction.py", "sha256": "3e24a39c60b05319070b8c3699b61d652a66c85bf2a2c069dcf454f2dea3c651", "size_bytes": 14885 }, { "path": "src/annotation_vocabulary/analysis/gene3d_interpro.py", "sha256": "3d8dedb4e91fc33f74b397459d895b3f8a1fce3d41e133a9a95af741fc5a7932", "size_bytes": 56667 }, { "path": "src/annotation_vocabulary/analysis/pipeline.py", "sha256": "9959161cc195566139f7c080d48f208698dd13a5f0aad9dd0b571c5be8c76d9e", "size_bytes": 16203 }, { "path": "src/annotation_vocabulary/artifacts.py", "sha256": "7d144a32af0568ebd2d925427df4ac2356d1dc558feeeb64dfed391fa278b210", "size_bytes": 8132 }, { "path": "src/annotation_vocabulary/card.py", "sha256": "c31bff4a539e774be60c55f10271ab2c0f39bb58952eb02b56cefe836b186bbc", "size_bytes": 29759 }, { "path": "src/annotation_vocabulary/cli.py", "sha256": "2a68816fdea94217a7417c9360ac83c4fff4140c2763e377f0df0abf1fe0a397", "size_bytes": 14070 }, { "path": "src/annotation_vocabulary/enrichment.py", "sha256": "9f5f6a5ffba8f0f333b27352e71cfb576f99071c4e4f23ddc33a322ad225ce37", "size_bytes": 24518 }, { "path": "src/annotation_vocabulary/grammar.py", "sha256": "aa5d5ce33fccdc4a898926fd14661d6e43c517a8659940f32a686a6af4e3a92a", "size_bytes": 5080 }, { "path": "src/annotation_vocabulary/hub.py", "sha256": "02412b14f674f2c324af5db63ab73a0ea5411c0e209ddef64160da15493259ab", "size_bytes": 13629 }, { "path": "src/annotation_vocabulary/hub_release.py", "sha256": "5ac21d7494a703bf9c1a85c6ddeaa955e9ad9a73c9a019602a2e75fef6806ea5", "size_bytes": 31810 }, { "path": "src/annotation_vocabulary/legacy_release.py", "sha256": "841171b47283a276cdd473c79414e072b187c69c8851601b2425cbe93711336b", "size_bytes": 9771 }, { "path": "src/annotation_vocabulary/migration.py", "sha256": "9a1e39a16858cbaedb85be8799ec4abb8b2708ba5f593a4b7ef723186f4683ff", "size_bytes": 27073 }, { "path": "src/annotation_vocabulary/mmseqs.py", "sha256": "a1d9ed82f2cf8dde70849622288b0edd33ede3991c743c68da8f498df1213b32", "size_bytes": 42874 }, { "path": "src/annotation_vocabulary/pipeline.py", "sha256": "42af02b22382aab52850d828deefd598df0c4c885fb1219a03fe14bab4b54219", "size_bytes": 37619 }, { "path": "src/annotation_vocabulary/release.py", "sha256": "50a5b9c1c4ba3a50e61452fa82bda5566b27bebe5fc64febc6e5b3b7a2181f2f", "size_bytes": 51618 }, { "path": "src/annotation_vocabulary/replacement_rules.py", "sha256": "8254e6360bf0101e527934d62b54501be114183499fa6c700e339355d699c426", "size_bytes": 24744 }, { "path": "src/annotation_vocabulary/schema.py", "sha256": "925ba5cc41ce05ed189a999851e2422f256ed75d23c2daf91d322fb6d0436d74", "size_bytes": 5053 }, { "path": "src/annotation_vocabulary/software_manifest.py", "sha256": "f7b6eaddbf0f4446f5b5d42b2f33944a05056a209565d3ec7f72534d2d2a9203", "size_bytes": 23885 }, { "path": "src/annotation_vocabulary/source_pins.py", "sha256": "1fbdc689d5d18f1956f8a68d21dc45521819a7529c2a76a4da060056643026c0", "size_bytes": 10771 }, { "path": "src/annotation_vocabulary/sources/__init__.py", "sha256": "a59d758568d0b453d5f9281a36e54e401314aa1d4088108952e9e593244c605f", "size_bytes": 1048 }, { "path": "src/annotation_vocabulary/sources/acquisition.py", "sha256": "ea609dd706856abee47b15c679a017bb8b2a986c0730697307fdfe47ff1cd575", "size_bytes": 9646 }, { "path": "src/annotation_vocabulary/sources/interpro.py", "sha256": "719bce8f1b3210a4441f56eb46e0e1ce2bb2bda24b0bd3e91df79482a8464723", "size_bytes": 11149 }, { "path": "src/annotation_vocabulary/sources/obo.py", "sha256": "fe11fed9060e1d6853eb0216a3dba1a7a735e6e76d6437d791ae67952b362bc9", "size_bytes": 4779 }, { "path": "src/annotation_vocabulary/sources/taxonomy.py", "sha256": "45ae697f19359b42840e3c1def9b052a87cde3348c325f349db6df9f39af1117", "size_bytes": 6929 }, { "path": "src/annotation_vocabulary/sources/uniprot.py", "sha256": "0bdec0dcc6477517e0401fcdc192c9f4ab126897e1d5f393cff10bfd1ab14a79", "size_bytes": 23076 }, { "path": "src/annotation_vocabulary/sources/uniprot_vocab.py", "sha256": "e6d32e2d810387093b97c544b21b9d5da161e238ad5c5a009a7e1c62e0601695", "size_bytes": 12512 }, { "path": "src/annotation_vocabulary/splitting.py", "sha256": "ef36137ce83e2dc741885a4c8962e370c83f42e30d7813e1600da263f81ca754", "size_bytes": 14993 }, { "path": "src/annotation_vocabulary/validation.py", "sha256": "5f54da1a29ae2849e2864c87cb88b579ea13676fcca84e7017a3948090560d64", "size_bytes": 60523 }, { "path": "src/annotation_vocabulary/vocabulary.py", "sha256": "7f2fe006d8a8e3961405c2bf5c0f76a5970191d7186897f82a595e9f3aac0357", "size_bytes": 30895 }, { "path": "tests/fixtures/uniprot_source_record.dat", "sha256": "9a89cd1833a0ff5c214a8c769b95416795ab74d2bbefcac62fc49ce7b668bc21", "size_bytes": 2341 }, { "path": "tests/test_acquisition.py", "sha256": "676fade7297a455c02657d01028516cc7628a219f25911741272cee2de671cdc", "size_bytes": 4517 }, { "path": "tests/test_artifacts.py", "sha256": "f3ec4f5fcbfc6606c81c70bbb3cd90dbe59f570e19021f8590ff651f0966a822", "size_bytes": 2793 }, { "path": "tests/test_association.py", "sha256": "e975c781c0a65e83df3897b690105a0334632c7d9072416133dc90c5997dab65", "size_bytes": 6819 }, { "path": "tests/test_card.py", "sha256": "0ec1e8353b97f99d6891762e8619313db1ea0833dd753a95ccd661a5a9b8328f", "size_bytes": 8043 }, { "path": "tests/test_cli.py", "sha256": "a7f6b856175e95c95c165062ef200b9e1aa91a86ae7bdec238a00c1bb63244c2", "size_bytes": 13962 }, { "path": "tests/test_enrichment.py", "sha256": "74c1f6311d8acacb9aca932f3a836fc6ad0e72d2f0f55a3877bcb218b15a0aa8", "size_bytes": 21916 }, { "path": "tests/test_gene3d_interpro.py", "sha256": "16c679d4009dcd202fc872d844342373684c578027347d84ef757b9c8dfda300", "size_bytes": 20575 }, { "path": "tests/test_hub.py", "sha256": "03901b254136d7da12989abe8f5064b25efd1b4e7a88944c73cb2a67b844d4e4", "size_bytes": 8929 }, { "path": "tests/test_hub_release.py", "sha256": "7363deb902693ae63475918b04cabffa68327c3eb3311b1fb9729244ba1d0dcd", "size_bytes": 37322 }, { "path": "tests/test_interpro.py", "sha256": "3b17e925427344300a7b283b4896e0238858605ac5375582ffdcf5d612c76896", "size_bytes": 9387 }, { "path": "tests/test_legacy_release.py", "sha256": "d58703f70777ca4e81accf70726063dee3b5f83915e9f21fcc6aea2cd270f4c0", "size_bytes": 10700 }, { "path": "tests/test_manifest_existing_mmseqs_run.py", "sha256": "35159a23ff39eff032451b1918b2146d646359e44c29de47be6a94f96d1fe472", "size_bytes": 7066 }, { "path": "tests/test_migration.py", "sha256": "7a15474760eb3de22a85f7b42f670e892cf961068782c5b22862bb72a898f6a6", "size_bytes": 15400 }, { "path": "tests/test_mmseqs.py", "sha256": "fb059b4bd57e66e23e7f616d3f43ce4abecba5ab3177266e3c6159de1e4c4980", "size_bytes": 15890 }, { "path": "tests/test_obo.py", "sha256": "d5de7af870cd961e0ac32cd59aa8e2b50f36e3f7c41b5f0d61af0b8c103ec075", "size_bytes": 2451 }, { "path": "tests/test_pipeline.py", "sha256": "9cb5e206137f3556523edb606e51f877dc5b2c48ccd0f86a8fc297e014c48d33", "size_bytes": 18180 }, { "path": "tests/test_release.py", "sha256": "38784a88c83155a9e8a48c5b109e0e6e8aaa29c8ad57af0555f72ca572f623b7", "size_bytes": 32747 }, { "path": "tests/test_replacement_rules.py", "sha256": "939b6e77e506099f30bf3afb06731556a6c8862f5ac3c05d1f4bfec3a3f2592f", "size_bytes": 20848 }, { "path": "tests/test_schema_and_grammar.py", "sha256": "ce76faf1cd919cd8f898ab422d4df961cd2a6a14ebe5e4e50a205bc5a3c06040", "size_bytes": 4708 }, { "path": "tests/test_software_manifest.py", "sha256": "283ca06d48d45c20236377fdb7c51efc108905e85a25c90f6b483cf3ea81855b", "size_bytes": 13143 }, { "path": "tests/test_source_pins.py", "sha256": "4af2d35950a3471f794f085c5e83040c99e9719ab2f273aa571a42cdeac84b94", "size_bytes": 4747 }, { "path": "tests/test_splitting.py", "sha256": "91d80d6c16abd37f7fc2b899e2cfb5338b326f5d2b311547e46d169e35876017", "size_bytes": 3718 }, { "path": "tests/test_taxonomy.py", "sha256": "e9da2fe00ac09af5e426f34cacc6c37298b85da8d1b9f813a1264079f22c592b", "size_bytes": 2672 }, { "path": "tests/test_uniprot_source.py", "sha256": "986aac9737c8d47fe1fdf4d33ccfe36106518a4c436475587f2f153d128c2eb9", "size_bytes": 5622 }, { "path": "tests/test_uniprot_vocab.py", "sha256": "b026f51a8abf9cf56c8f6fc8a84f5e54ee548d00fcd5ef97bb3579f33e633950", "size_bytes": 6069 }, { "path": "tests/test_validation.py", "sha256": "c61af9afa49d4e1d0afaad7970f0f5a2f3df7ca99cc0268dc2ddaa47125eb220", "size_bytes": 23251 }, { "path": "tests/test_vocabulary.py", "sha256": "1239df27afeff48e5804773a3e7d41e2b001b33779234780206ff7a024047ef4", "size_bytes": 10724 } ], "sha256": "da8c070252a22dbf3b55b8d9acbd155d01ffe434150b776aff6276fd446debcf" } } }