| |
|
| |
|
| | |
| | source("product/MPI/src/summarize_map.R") |
| |
|
| |
|
| | check_function_prediction_pivot <- function(dataset_tag, verbose = FALSE) { |
| |
|
| | if (verbose) { |
| | "Checking function prediction pivot for dataset ", dataset_tag, "\n", sep = "") |
| | } |
| | dataset_long <- arrow::read_parquet( |
| | paste0("intermediate/", dataset_tag, "_function_predictions.parquet")) |
| |
|
| | dataset_wide <- dataset_long |> |
| | dplyr::select(-term_name) |> |
| | tidyr::pivot_wider( |
| | id_cols = id, |
| | names_from = term_id, |
| | values_from = Y_hat) |
| |
|
| | sum(is.na(dataset_wide)) |
| | } |
| |
|
| | check_function_prediction_pivot("rosetta_high_quality") |
| | check_function_prediction_pivot("rosetta_low_quality") |
| | check_function_prediction_pivot("dmpfold_high_quality") |
| | check_function_prediction_pivot("dmpfold_low_quality") |
| |
|
| |
|
| |
|
| | check_id_consistency <- function(dataset_tag, verbose = FALSE) { |
| | if (verbose) { |
| | cat("Loading model ids...\n") |
| | } |
| | ids_model <- arrow::read_parquet( |
| | paste0("intermediate/", dataset_tag, "_models.parquet"), |
| | col_select = "id") |
| |
|
| | if (verbose) { |
| | cat("Loading function prediction ids...\n") |
| | } |
| | ids_anno <- arrow::read_parquet( |
| | paste0("intermediate/", dataset_tag, "_function_predictions.parquet"), |
| | col_select = "id") |> |
| | dplyr::distinct(id) |
| |
|
| | problems <- dplyr::full_join( |
| | ids_model |> |
| | dplyr::mutate(model_id = id), |
| | ids_anno |> |
| | dplyr::mutate(anno_id = id), |
| | by = "id") |> |
| | summarize_map( |
| | x_cols = model_id, |
| | y_cols = anno_id, |
| | verbose = verbose) |
| | problems |
| | } |
| |
|
| | check_id_consistency("rosetta_high_quality") |
| | check_id_consistency("rosetta_low_quality") |
| | check_id_consistency("dmpfold_high_quality") |
| | check_id_consistency("dmpfold_low_quality") |
| |
|
