SWE-bench-Science / tools /run_batch.py
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Fix baseline patch capture before verifier (part 4)
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#!/usr/bin/env python3
"""Pull prebuilt task images and run an explicit local selection with Pier."""
from __future__ import annotations
import argparse
import hashlib
import json
import os
import shlex
import subprocess
import sys
from pathlib import Path
try:
from .provider_config import parse_dotenv, render_codex_config, resolve_codex_profile
except ImportError: # Direct execution: python3 scripts/run_batch.py
from provider_config import parse_dotenv, render_codex_config, resolve_codex_profile
try:
from .summarize_results import write_summary
except ImportError: # Direct execution: python3 scripts/run_batch.py
from summarize_results import write_summary
try:
import tomllib
except ModuleNotFoundError: # Python 3.10 and earlier
try:
import tomli as tomllib
except ModuleNotFoundError as exc: # pragma: no cover - depends on host Python
raise SystemExit(
"run_batch.py requires Python 3.11+ or the backport: "
"python3 -m pip install tomli"
) from exc
def task_dirs(root: Path) -> list[Path]:
if root.name.startswith("task_") and (root / "task.toml").is_file():
return [root]
return sorted(
(path for path in root.glob("task_*") if path.is_dir()),
key=lambda path: path.name,
)
def validate_artifact_hooks(task_dirs_: list[Path]) -> None:
missing = [
task_dir.name
for task_dir in task_dirs_
if not (task_dir / "pre_artifacts.sh").is_file()
]
if missing:
raise ValueError(
"task bundles are missing pre_artifacts.sh; rematerialize them with "
"the current release tools: " + ", ".join(missing)
)
def load_image_refs(task_dir: Path) -> list[str]:
config = tomllib.loads((task_dir / "task.toml").read_text(encoding="utf-8"))
refs = [
config.get("environment", {}).get("docker_image", ""),
config.get("verifier", {}).get("environment", {}).get("docker_image", ""),
]
missing = [ref for ref in refs if not ref or "pending" in ref]
if missing:
raise ValueError(f"{task_dir.name} has unpublished image references")
return list(dict.fromkeys(refs))
def pull_images(task_dirs_: list[Path], *, platform: str) -> list[str]:
refs: list[str] = []
for task_dir in task_dirs_:
refs.extend(load_image_refs(task_dir))
refs = list(dict.fromkeys(refs))
for ref in refs:
command = ["docker", "pull", "--platform", platform, ref]
print("+ " + shlex.join(command), flush=True)
subprocess.run(command, check=True)
return refs
def selection_payload(root: Path, dirs: list[Path]) -> dict[str, object]:
selection_file = root / "selection.json"
if selection_file.is_file():
payload = json.loads(selection_file.read_text(encoding="utf-8"))
task_ids = [str(value) for value in payload.get("task_ids", [])]
else:
task_ids = [path.name.removeprefix("task_") for path in dirs]
payload = {
"allow_restricted_licenses": None,
"task_ids": task_ids,
}
canonical = json.dumps({"task_ids": task_ids}, sort_keys=True).encode("utf-8")
payload["task_ids"] = task_ids
payload["selection_sha256"] = hashlib.sha256(canonical).hexdigest()
return payload
def redacted_command(command: list[str]) -> str:
redacted: list[str] = []
index = 0
while index < len(command):
value = command[index]
if value == "--agent-env" and index + 1 < len(command):
redacted.extend([value, "<redacted>"])
index += 2
continue
if (
value == "--agent-kwarg"
and index + 1 < len(command)
and command[index + 1].startswith("config_toml=")
):
redacted.extend([value, "config_toml=<provider-config>"])
index += 2
continue
if "=" in value:
key = value.split("=", 1)[0].lower()
if any(marker in key for marker in ("key", "token", "secret", "password", "authorization")):
redacted.append(key + "=<redacted>")
index += 1
continue
redacted.append(value)
index += 1
return shlex.join(redacted)
def pier_version(pier_bin: str) -> str | None:
try:
completed = subprocess.run(
[pier_bin, "--version"], capture_output=True, text=True, check=False
)
except OSError:
return None
value = (completed.stdout or completed.stderr).strip()
return value or None
def main() -> int:
parser = argparse.ArgumentParser(
description=__doc__,
epilog="Use docs/run-batch.md for provider profiles, gateway routing, and result paths.",
)
parser.add_argument("--path", type=Path, required=True, help="Materialized task directory")
parser.add_argument("--agent", default="nop", help="Pier harness, for example codex, claude-code, mini-swe-agent, or nop")
parser.add_argument("--env", default="docker", help="Pier environment backend")
parser.add_argument("--env-file", type=Path, help="Provider/harness dotenv file")
parser.add_argument("--model", action="append", default=[], help="Model route; repeatable")
parser.add_argument("--agent-env", action="append", default=[], help="Extra harness environment KEY=VALUE; repeatable")
parser.add_argument("--agent-kwarg", action="append", default=[], help="Extra Pier agent keyword KEY=VALUE; repeatable")
parser.add_argument("--n-concurrent", type=int, default=1, help="Simultaneous tasks (default: 1)")
parser.add_argument("--n-attempts", type=int, default=1, help="Attempts per task (default: 1)")
parser.add_argument("--max-retries", type=int, default=0, help="Retries after attempt-level failure (default: 0)")
parser.add_argument("--agent-timeout-multiplier", type=float, help="Multiplier for the agent-stage timeout")
parser.add_argument("--verifier-timeout-multiplier", type=float, help="Multiplier for verifier/build timeouts")
parser.add_argument("--jobs-dir", type=Path, default=Path("jobs"), help="Pier jobs and summary directory")
parser.add_argument("--job-name", help="Stable name used in result paths")
parser.add_argument("--platform", default="linux/amd64", help="Docker platform (default: linux/amd64)")
parser.add_argument("--pier-bin", default="pier", help="Pier executable or absolute path")
parser.add_argument("--agent-import-path", help="Explicit Pier agent import path")
parser.add_argument("--skip-pull", action="store_true", help="Skip Docker pulls for refs already present locally")
parser.add_argument(
"--no-auto-provider",
action="store_true",
help="Do not translate CODEX_* values from --env-file into native Pier kwargs",
)
parser.add_argument(
"--no-auto-agent-adapter",
action="store_true",
help="Use Pier's built-in agent class instead of the runtime-only Codex adapter",
)
parser.add_argument("--dry-run", action="store_true", help="Validate, pull, and record metadata without invoking Pier")
args = parser.parse_args()
root = args.path.resolve()
dirs = task_dirs(root)
if not dirs:
raise ValueError(f"no task_NNN directories found under {root}")
validate_artifact_hooks(dirs)
selection = selection_payload(root, dirs)
image_refs: list[str] = []
for task_dir in dirs:
image_refs.extend(load_image_refs(task_dir))
image_refs = list(dict.fromkeys(image_refs))
if not args.skip_pull:
pull_images(dirs, platform=args.platform)
models = list(args.model)
agent_kwargs = list(args.agent_kwarg)
agent_import_path = args.agent_import_path
if args.agent == "codex" and not args.no_auto_agent_adapter and not agent_import_path:
package = Path(__file__).resolve().parent.name
agent_import_path = f"{package}.pier_adapters:ScienceBenchCodex"
provider_metadata: dict[str, object] | None = None
if args.agent == "codex" and not args.no_auto_provider:
profile_env = dict(os.environ)
if args.env_file:
profile_env.update(parse_dotenv(args.env_file))
profile = resolve_codex_profile(profile_env)
if not models:
models.append(profile.model)
if not any(value.startswith(("config_toml=", "config_toml_file=")) for value in agent_kwargs):
agent_kwargs.append("config_toml=" + render_codex_config(profile))
# Pier normally strips a provider prefix before invoking Codex. Gateways
# may use that prefix for routing, so preserve the exact model identifier
# unless the caller supplied an explicit command override.
if not any(value.startswith("command_model_name=") for value in agent_kwargs):
agent_kwargs.append("command_model_name=" + profile.model)
if profile.version and not any(value.startswith("version=") for value in agent_kwargs):
agent_kwargs.append("version=" + profile.version)
if profile.reasoning_effort and not any(
value.startswith("reasoning_effort=") for value in agent_kwargs
):
agent_kwargs.append("reasoning_effort=" + profile.reasoning_effort)
provider_metadata = {
"protocol": profile.wire_api,
"base_url": profile.safe_base_url,
"credential_env": "OPENAI_API_KEY",
}
command = [
args.pier_bin, "run", "--path", str(root), "--agent", args.agent, "--env", args.env,
"--n-concurrent", str(args.n_concurrent), "--n-attempts", str(args.n_attempts),
"--max-retries", str(args.max_retries), "--no-force-build", "--no-delete", "--yes",
]
if args.agent_timeout_multiplier is not None:
command.extend(["--agent-timeout-multiplier", str(args.agent_timeout_multiplier)])
if args.verifier_timeout_multiplier is not None:
command.extend(["--verifier-timeout-multiplier", str(args.verifier_timeout_multiplier)])
if args.env_file:
command.extend(["--env-file", str(args.env_file)])
if agent_import_path:
command.extend(["--agent-import-path", agent_import_path])
for model in models:
command.extend(["--model", model])
for value in args.agent_env:
command.extend(["--agent-env", value])
for value in agent_kwargs:
command.extend(["--agent-kwarg", value])
if args.jobs_dir:
command.extend(["--jobs-dir", str(args.jobs_dir)])
if args.job_name:
command.extend(["--job-name", args.job_name])
metadata = {
"task_ids": selection["task_ids"],
"allow_restricted_licenses": selection.get("allow_restricted_licenses"),
"selection_sha256": selection["selection_sha256"],
"image_refs": image_refs,
"platform": args.platform,
"agent": args.agent,
"models": models,
"n_concurrent": args.n_concurrent,
"n_attempts": args.n_attempts,
"max_retries": args.max_retries,
"pier_version": pier_version(args.pier_bin),
"pier_command": redacted_command(command),
"agent_import_path": agent_import_path,
"provider": provider_metadata,
}
metadata_path = root / "batch-run.json"
metadata_path.write_text(json.dumps(metadata, indent=2) + "\n", encoding="utf-8")
print(json.dumps(metadata, indent=2, sort_keys=True))
if args.dry_run:
return 0
pier_environment = os.environ.copy()
# Pier may build an ephemeral environment+agent image. Keep that derived
# build on the same architecture as the prebuilt task images.
pier_environment["DOCKER_DEFAULT_PLATFORM"] = args.platform
tool_root = str(Path(__file__).resolve().parent.parent)
existing_pythonpath = pier_environment.get("PYTHONPATH", "")
pier_environment["PYTHONPATH"] = os.pathsep.join(
value for value in (tool_root, existing_pythonpath) if value
)
returncode = subprocess.run(command, check=False, env=pier_environment).returncode
try:
summary_json, summary_csv = write_summary(args.jobs_dir)
print(json.dumps({"summary_json": str(summary_json), "summary_csv": str(summary_csv)}, indent=2))
except (OSError, ValueError) as exc:
print(f"warning: unable to write result summary: {exc}", file=sys.stderr)
return returncode
if __name__ == "__main__":
try:
raise SystemExit(main())
except (FileNotFoundError, ValueError, tomllib.TOMLDecodeError) as exc:
print(f"error: {exc}", file=sys.stderr)
raise SystemExit(2)