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README.md
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## 📚 Dataset Citation
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}
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---
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license:
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---
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---
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license: apache-2.0
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language:
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- en
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---
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# NeuroBOLT EEG-fMRI ROI Dataset
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**Short name:** `neurobolt-rest`
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**Modalities:** EEG (simultaneous with fMRI), fMRI ROI time series
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**Setting:** Resting-state (eyes closed)
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**Subjects / Scans:** 22 participants, 29 fMRI scans (7 participants with two scans)
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<!-- **Contact for extended data (task-condition or higher-res ROIs):** yamin.li@vanderbilt.edu
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-->
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---
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## 🧠 Overview
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This dataset provides synchronized resting-state **EEG** and **BOLD fMRI ROI time series** collected **simultaneously** from healthy adults. It is intended for research on **NeuroAI, cross-modal modeling (EEG-fMRI), multimodal fusion, and hemodynamic modeling**.
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We release:
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- Preprocessed **fMRI ROI time series** (DiFuMo parcellation, n=64).
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- Preprocessed and resampled **EEG** time series aligned to fMRI.
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*For **task-condition data**, **higher-resolution DiFuMo ROIs** (>64), or any inquiries, please contact **yamin.li@vanderbilt.edu**.*
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## 📖 Data Collection Summary
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- **Participants:** 22 healthy volunteers.
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- **Sessions:** Two 20-minute resting sessions per participant (eyes closed); final dataset contains **29 scans** after artifact exclusion.
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- **Ethics:** Written informed consent obtained. Procedures approved by the Institutional Review Board (IRB).
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### fMRI
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- **Scanner:** 3T
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- **Sequence:** Multi-echo gradient-echo EPI
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- **TR:** 2100 ms
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- **Condition:** Rest (eyes closed)
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### EEG
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- **System:** MR-compatible, 32-channel (10–20), **FCz** reference (BrainAmps MR, Brain Products GmbH)
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- **Sampling rate:** 5 kHz, synchronized to the **scanner’s 10 MHz clock** (facilitates MR gradient artifact reduction)
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---
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## 🔩 Preprocessing Summary
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### fMRI → ROI time series
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- **Parcellation:** DiFuMo (n = 64) with **2 additional global signals**
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- *global signal clean (cleaned whole-brain average signal, with confounds regressed)*
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- *global signal raw (unprocessed whole-brain average signal)*
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- **Confound regression:** Motion regressors removed
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- **Temporal filtering:** Low-pass filter applied at < 0.15 Hz
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- **Normalization:** Demeaned and scaled by the **95th percentile** of the absolute amplitude (per ROI)
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In the paper we evaluated **7 representative ROIs** spanning diverse spatial and functional domains:
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- **Primary sensory:** *Cuneus*, *Heschl’s gyrus*
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- **High-level cognitive:** *Precuneus anterior*, *Middle frontal gyrus anterior*
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- **Subcortical:** *Putamen*, *Thalamus*
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- **Global:** *global signal clean*
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### EEG
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- Channels: ECG/EOG/EMG **removed** → remaining **26 scalp channels**
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- Resampling: **5 kHz → 200 Hz** (retains <100 Hz content, improves efficiency)
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- Alignment: synchronized to fMRI acquisition for one-to-one pairing with BOLD time points
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- Model input convention (if used): **16-second EEG windows** preceding each fMRI TR (covers HRF peak and variance)
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*Detailed acquisition and artifact-reduction procedures are documented in the [NeuroBOLT paper’s Appendix D](https://openreview.net/pdf?id=y6qhVtFG77).*
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---
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## ⛳ Model Checkpoints
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- Model checkpoints for selected brain regions are available for reproducing our results:
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👉 [**Hugging Face Repository**](https://huggingface.co/ssssssup/NeuroBOLT/tree/main)
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- A step-by-step tutorial can be found here:
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📘 [**Google Colab Notebook**](https://colab.research.google.com/drive/1e7mfxQqth4mcfqlhTypgB5Q0gYPNbT-y?usp=sharing)
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## 📚 Dataset Citation
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}
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---
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license: Apache-2.0
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---
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