#!/usr/bin/env python3 import collections import math import random import os import logging import json import signal from contextlib import contextmanager from functools import wraps import altair import torch import wandb import numpy as np from omegaconf import DictConfig, OmegaConf, open_dict from tqdm import tqdm PAD = 0 BOS = 1 EOS = 2 POSITIVE = ord(';') NEGATIVE = ord('$') EMPTY = '\x03' def count_parameters(model): return sum(math.prod(p.shape) for p in model.parameters()) def format_parameter_count(model): n = count_parameters(model) if n < 1000: return str(n) if n < 10**6: return f'{n // 10**3}K' if n < 10**9: return f'{n / 10**6:.1f}M' return f'{n / 10**6:.1f}B' def encode_batch(b: list[str], device: torch.device, bos=True, eos=True) -> torch.LongTensor: if not b: return torch.tensor([], dtype=torch.long, device=device) max_len = max(map(len, b)) return torch.tensor([[BOS] * bos + list(map(ord, o)) + [EOS] * eos + [PAD] * (max_len - len(o)) for o in b], dtype=torch.long, device=device) def decode_batch(b: torch.LongTensor) -> list[str]: return [''.join(chr(c) for c in row if c > EOS) for row in b] def sample_batch(examples: list[str], batch_size: int, trim_len: int = 500) -> list[str]: 'Samples a batch of examples with a bounded total number of characters' batch = [] max_size = 0 while True: example = random.choice(examples) example_len = min(len(example), trim_len) max_size = max(max_size, example_len) if max_size * (1 + len(batch)) > batch_size: break batch.append(example) return batch def batch_strings(s: list[str], batch_size: int) -> list[str]: '''Batches a list of strings into small batches with a bounded total number of characters in each.''' batches = [] stack = s[::-1] while stack: batch = [] max_size = 0 while stack: example = stack.pop() max_size = max(max_size, len(example)) if batch and max_size * (1 + len(batch)) > batch_size: stack.append(example) break batch.append(example) batches.append(batch) return batches def log(x): 'Safe version of log' return math.log(1e-50 + max(0, x)) def softmax(logits: torch.Tensor, temperature = 1.0): s = logits.exp() / temperature return s / s.sum() def pop_max(l: list, key) -> (object, list): if not l: return None, l i_max = max(range(len(l)), key=lambda i: key(l[i])) l[-1], l[i_max] = l[i_max], l[-1] return l[-1], l[:-1] def shuffle_state(s: str) -> str: 'Perform data augmentation for Peano states by shuffling e-classes and e-nodes' eclasses = s.split('; ') random.shuffle(eclasses) for i in range(len(eclasses)): enodes, dtype = eclasses[i].split(' : ') # Strip '{' and '}' enodes = enodes.lstrip('{').rstrip('}').split('=') random.shuffle(enodes) eclasses[i] = f'{{{"=".join(enodes)}}} : {dtype}' return '; '.join(eclasses) def parse_sexp(s: str, ptr: int = 0) -> (object, int): while ptr < len(s) and s[ptr] == ' ': ptr += 1 if s[ptr] == '(': # Read list ptr += 1 # Consume ( l = [] while s[ptr] != ')': elem, ptr = parse_sexp(s, ptr) l.append(elem) ptr += 1 # Consume ) return l, ptr else: # Read atom before = ptr while ptr < len(s) and s[ptr] not in ' ()': ptr += 1 return s[before:ptr], ptr def randomize_atoms(sexp, criteria, sample, mapping): if isinstance(sexp, str): if sexp in mapping: return mapping[sexp] if criteria(sexp): v = str(sample()) mapping[sexp] = v return v return sexp return [randomize_atoms(s, criteria, sample, mapping) for s in sexp] def format_sexp(sexp, level=0, indent=0): if isinstance(sexp, str): return level * indent * ' ' + sexp sep = ' ' if not indent else '\n ' return ((level * indent * ' ') + '(' + sep.join(map(lambda e: format_sexp(e, level + 1, indent), sexp)) + ')') def toggle_infix(sexp): if isinstance(sexp, str): return sexp children = list(map(toggle_infix, sexp)) if len(children) == 3: return [children[1], children[0], children[2]] return children def randomly_mask_atoms(sexp, probability): if isinstance(sexp, str): if random.random() < probability: return '?' return sexp return list(map(lambda elem: randomly_mask_atoms(elem, probability), sexp)) def randomly_mask_goal_terms(goal: str, probability=0.1) -> str: 'Perform data augmentation for Peano goals by masking some sub-terms' sexp, _ = parse_sexp(goal) sexp = randomly_mask_atoms(sexp, probability) return format_sexp(sexp) def get_device(cfg): if cfg is None: return torch.device('cpu') if isinstance(cfg, int): return torch.device(cfg) if cfg.get('gpu') is not None: return torch.device(cfg.gpu) return torch.device('cpu') def choose_from_list(prompt, l, to_str=str): print(prompt) for i, e in enumerate(l): print(f'{i:2d} - ', to_str(e)) return l[int(input('> '))] def setup_wandb(cfg: DictConfig): if cfg.job.get("wandb_project"): with open_dict(cfg.job): cfg.job.cwd = os.getcwd() wandb.init( project=cfg.job.wandb_project, resume=cfg.job.get('resume', False), config=OmegaConf.to_container(cfg, resolve=True, throw_on_missing=True)) for key in logging.Logger.manager.loggerDict.keys(): if key.startswith('wandb'): logging.getLogger(key).setLevel(logging.WARNING) else: # Disable wandb (i.e., make log() a no-op). wandb.log = lambda *args, **kwargs: None def count_inversions(l: list): '''Counts the number of inversions in a list. Complexity: O(nk), where n = len(l) and k = len(set(l)); thus, works well if k is small. ''' counts = collections.defaultdict(int) inversions = 0 for i, val in enumerate(l): for key, cnt in counts.items(): if key > val: inversions += cnt counts[val] += 1 return inversions def plot_vegalite(template: str, data: list, output_path: str, translations={}): with open(f'vega-lite/{template}.json') as f: spec = json.load(f) spec['data'] = {'values': data} spec = translate_object(spec, translations) with open(output_path + '.json', 'w') as f: json.dump(spec, f) # altair.Chart.from_dict(spec).save(output_path) # , scale_factor=5) def bootstrap_mean_ci(trials, confidence): estimates = [] for i in range(5000): estimates.append(np.mean(random.choices(trials, k=len(trials)))) bounds = ((1 - confidence) / 2, 1 - (1 - confidence) / 2) return np.mean(estimates), tuple(np.quantile(estimates, bounds, method='nearest')) def format_blocks_with_indent(content, level=0, indent=4, header=1, suffix=1): if isinstance(content, str): return ' ' * (level * indent) + content assert isinstance(content, list) pieces = [] for i, l in enumerate(content): pieces.append(format_blocks_with_indent(l, level + (i >= header and i < len(content) - suffix), indent, header)) return '\n'.join(pieces) def value_color(value: float) -> str: 'Given a node value estimate between 0 and 1, returns a color for its node in GraphViz.' import coloraide BAD = coloraide.Color('#ff837a') GOOD = coloraide.Color('#1c7d13') c = BAD.mix(GOOD, value).convert('srgb') return c.to_string(hex=True) # Adapted from https://stackoverflow.com/questions/366682/how-to-limit-execution-time-of-a-function-call @contextmanager def time_limit(seconds): def signal_handler(signum, frame): raise TimeoutError("Timed out") signal.signal(signal.SIGALRM, signal_handler) signal.alarm(seconds) try: yield finally: signal.alarm(0) def save_json(obj, path): with open(path, 'w') as f: json.dump(obj, f) def replace(l: tuple, i: int, x: object): return l[:i] + (x,) + l[i+1:] def batch_inference(batch_size: int = 10000, arg_index=0): def batch_decorator(method): @wraps(method) def batched_method(self, *args, **kwargs): l = args[arg_index] batch, batch_current_size = [], 0 result = [] for i in range(len(l) + 1): if i < len(l): batch.append(l[i]) batch_current_size += len(l[i]) if (i == len(l) and batch) or batch_current_size >= batch_size: result.extend(method(self, *replace(args, arg_index, batch), **kwargs)) batch, batch_current_size = [], 0 return result return batched_method return batch_decorator def tqdm_if(verbose): return tqdm if verbose else lambda x: x def translate_object(obj, translations): if isinstance(obj, dict): new_obj = {} for key, value in obj.items(): if key in translations: new_obj[translations[key]] = translate_object(value, translations) else: new_obj[key] = translate_object(value, translations) return new_obj elif isinstance(obj, list): return [translate_object(item, translations) for item in obj] elif isinstance(obj, str): return translations.get(obj, obj) else: return obj