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OpenAlex

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  2. README.md +334 -0
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+ extracted/authors/2025-12-25/part_0002.jsonl filter=lfs diff=lfs merge=lfs -text
418
+ extracted/authors/2026-01-13/part_0022.jsonl filter=lfs diff=lfs merge=lfs -text
419
+ extracted/authors/2026-01-13/part_0013.jsonl filter=lfs diff=lfs merge=lfs -text
420
+ extracted/authors/2026-01-13/part_0014.jsonl filter=lfs diff=lfs merge=lfs -text
421
+ extracted/authors/2026-01-08/part_0000.jsonl filter=lfs diff=lfs merge=lfs -text
422
+ extracted/authors/2026-01-14/part_0002.jsonl filter=lfs diff=lfs merge=lfs -text
423
+ extracted/authors/2026-01-14/part_0001.jsonl filter=lfs diff=lfs merge=lfs -text
424
+ extracted/authors/2026-01-14/part_0000.jsonl filter=lfs diff=lfs merge=lfs -text
README.md ADDED
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1
+ ---
2
+ configs:
3
+ - config_name: works
4
+ default: true
5
+ data_files:
6
+ - split: index
7
+ path: index/works/*.jsonl.gz
8
+ - config_name: authors
9
+ data_files:
10
+ - split: index
11
+ path: index/authors/*.jsonl.gz
12
+ - config_name: institutions
13
+ data_files:
14
+ - split: index
15
+ path: index/entities/institutions.jsonl.gz
16
+ - config_name: sources
17
+ data_files:
18
+ - split: index
19
+ path: index/entities/sources.jsonl.gz
20
+ - config_name: concepts
21
+ data_files:
22
+ - split: index
23
+ path: index/entities/concepts.jsonl.gz
24
+ - config_name: funders
25
+ data_files:
26
+ - split: index
27
+ path: index/entities/funders.jsonl.gz
28
+ - config_name: publishers
29
+ data_files:
30
+ - split: index
31
+ path: index/entities/publishers.jsonl.gz
32
+ - config_name: topics
33
+ data_files:
34
+ - split: index
35
+ path: index/entities/topics.jsonl.gz
36
+ - config_name: subfields
37
+ data_files:
38
+ - split: index
39
+ path: index/entities/subfields.jsonl.gz
40
+ - config_name: fields
41
+ data_files:
42
+ - split: index
43
+ path: index/entities/fields.jsonl.gz
44
+ - config_name: domains
45
+ data_files:
46
+ - split: index
47
+ path: index/entities/domains.jsonl.gz
48
+ - split: snapshot
49
+ path: snapshot/domains/*/*.jsonl.gz
50
+ - config_name: snapshot-works
51
+ data_files:
52
+ - split: train
53
+ path: snapshot/works/*/*.jsonl.gz
54
+ - config_name: snapshot-authors
55
+ data_files:
56
+ - split: train
57
+ path: snapshot/authors/*/*.jsonl.gz
58
+ - config_name: snapshot-institutions
59
+ data_files:
60
+ - split: train
61
+ path: snapshot/institutions/*/*.jsonl.gz
62
+ - config_name: snapshot-sources
63
+ data_files:
64
+ - split: train
65
+ path: snapshot/sources/*/*.jsonl.gz
66
+ - config_name: snapshot-concepts
67
+ data_files:
68
+ - split: train
69
+ path: snapshot/concepts/*/*.jsonl.gz
70
+ - config_name: snapshot-funders
71
+ data_files:
72
+ - split: train
73
+ path: snapshot/funders/*/*.jsonl.gz
74
+ - config_name: snapshot-publishers
75
+ data_files:
76
+ - split: train
77
+ path: snapshot/publishers/*/*.jsonl.gz
78
+ - config_name: snapshot-topics
79
+ data_files:
80
+ - split: train
81
+ path: snapshot/topics/*/*.jsonl.gz
82
+ - config_name: snapshot-subfields
83
+ data_files:
84
+ - split: train
85
+ path: snapshot/subfields/*/*.jsonl.gz
86
+ - config_name: snapshot-fields
87
+ data_files:
88
+ - split: train
89
+ path: snapshot/fields/*/*.jsonl.gz
90
+ - config_name: snapshot-domains
91
+ data_files:
92
+ - split: train
93
+ path: snapshot/domains/*/*.jsonl.gz
94
+ - config_name: search
95
+ data_files:
96
+ - split: train
97
+ path: index/search/*.jsonl.gz
98
+ - config_name: names
99
+ data_files:
100
+ - split: train
101
+ path: tiles/names/*.jsonl.gz
102
+ language:
103
+ - en
104
+ - multilingual
105
+ pretty_name: OpenAlex Graph Index & Tile Repository
106
+ size_categories:
107
+ - 100M<n<1B
108
+ tags:
109
+ - openalex
110
+ - scholarly-data
111
+ - citation-graph
112
+ - knowledge-graph
113
+ - graph-visualization
114
+ license: cc0-1.0
115
+ ---
116
+
117
+ # OpenAlex Graph Index & Tile Repository
118
+
119
+ A pre-built static index and tile repository derived from the [OpenAlex](https://openalex.org/) scholarly knowledge graph. Designed for efficient client-side graph exploration and visualization.
120
+
121
+ ## What is this?
122
+
123
+ This repository contains a **processed, indexed, and tiled** version of the OpenAlex snapshot, optimized for:
124
+
125
+ - **Static HTTP serving** — all files are pre-sharded binary or compressed JSONL, ready to serve from any CDN or file host
126
+ - **Client-side graph visualization** — spatial indices, LOD levels, and edge tiles enable progressive loading of a 500M+ node graph
127
+ - **Entity lookup** — compact ID mappings, name indices, and search indices for fast entity resolution
128
+
129
+ This repository includes both the **raw OpenAlex snapshot** (under `snapshot/`) and a **processed graph index and tile set** (under `index/`, `layout/`, `tiles/`) derived from it. The upstream snapshot is also available directly from [OpenAlex on S3](https://docs.openalex.org/download-all-data/openalex-snapshot).
130
+
131
+ ## About OpenAlex
132
+
133
+ [OpenAlex](https://openalex.org/) is a free, open catalogue of the global research system — scholarly works, authors, institutions, journals, and the connections between them. It is maintained by [OurResearch](https://ourresearch.org/) and available under a [CC0](https://creativecommons.org/publicdomain/zero/1.0/) public domain license.
134
+
135
+ The `snapshot/` directory in this repository is a mirror of the [OpenAlex S3 snapshot](https://docs.openalex.org/download-all-data/openalex-snapshot) ([AWS Open Data Registry](https://registry.opendata.aws/openalex/)). Records are gzip-compressed JSON Lines matching the [REST API schema](https://docs.openalex.org/api-entities), partitioned by date. The upstream snapshot is updated approximately monthly.
136
+
137
+ ### Citation
138
+
139
+ If you use this data, please cite OpenAlex:
140
+
141
+ > Priem, J., Piwowar, H., & Orr, R. (2022). OpenAlex: A fully-open index of scholarly works, authors, venues, institutions, and concepts. *ArXiv*. [https://arxiv.org/abs/2205.01833](https://arxiv.org/abs/2205.01833)
142
+
143
+ See also: [OpenAlex documentation](https://docs.openalex.org/) · [API](https://api.openalex.org/) · [GitHub](https://github.com/ourresearch/openalex-snapshot)
144
+
145
+ ## Dataset Viewer
146
+
147
+ Entity types are available as two sets of configs:
148
+
149
+ - **`works`**, **`authors`**, **`concepts`**, etc. — Compact entity index built by the pipeline
150
+ - **`snapshot-works`**, **`snapshot-authors`**, **`snapshot-concepts`**, etc. — Full OpenAlex API records from the raw S3 snapshot
151
+
152
+ ### Index configs schema
153
+
154
+ | Column | Type | Description |
155
+ |--------|------|-------------|
156
+ | `id` | `int64` | Compact integer ID (internal, not the OpenAlex ID) |
157
+ | `n` | `string` | Display name (author name, work title, etc.) |
158
+
159
+ ### Snapshot configs schema
160
+
161
+ Full OpenAlex JSON records matching the [REST API schema](https://docs.openalex.org/api-entities). Fields vary by entity type — see [OpenAlex docs](https://docs.openalex.org/) for details.
162
+
163
+ ### Additional configs
164
+
165
+ **`names`** — Tile display name shards:
166
+
167
+ | Column | Type | Description |
168
+ |--------|------|-------------|
169
+ | `id` | `int64` | Compact integer ID |
170
+ | `name` | `string` | Display name |
171
+
172
+ **`search`** — Inverted word index:
173
+
174
+ | Column | Type | Description |
175
+ |--------|------|-------------|
176
+ | `w` | `string` | Search word (lowercased token) |
177
+ | `ids` | `list[int64]` | Compact IDs of entities containing this word |
178
+
179
+ Binary files (mappings, coordinates, spatial indices, edge tiles) are not viewable — see [Repository Structure](#repository-structure) below.
180
+
181
+ ## Coverage
182
+
183
+ Derived from the OpenAlex snapshot (January 2026). Approximate entity counts:
184
+
185
+ | Entity | Count | Config |
186
+ |--------|-------|--------|
187
+ | Works | ~449M | `works` |
188
+ | Authors | ~108M | `authors` |
189
+ | Sources | 255,250 | `sources` |
190
+ | Institutions | 102,709 | `institutions` |
191
+ | Concepts | 65,026 | `concepts` |
192
+ | Funders | 32,437 | `funders` |
193
+ | Publishers | 10,703 | `publishers` |
194
+ | Topics | 4,516 | `topics` |
195
+ | Subfields | 252 | `subfields` |
196
+ | Fields | 26 | `fields` |
197
+ | Domains | 4 | `domains` |
198
+
199
+ ## Repository Structure
200
+
201
+ ```
202
+ snapshot/ # Raw OpenAlex snapshot (gzipped JSONL, date-partitioned)
203
+ ├── works/ # ~449M scholarly works (~750 GB compressed)
204
+ │ ├── manifest
205
+ │ └── YYYY-MM-DD/
206
+ │ └── part_NNNN.jsonl.gz
207
+ ├── authors/ # ~108M author profiles (~64 GB compressed)
208
+ ├── institutions/ # 103K institutions
209
+ ├── sources/ # 255K journals/repositories
210
+ ├── concepts/ # 65K subject concepts
211
+ ├── topics/ # 4.5K topics
212
+ ├── funders/ # 32K funders
213
+ ├── publishers/ # 11K publishers
214
+ ├── domains/ # 4 top-level domains
215
+ ├── fields/ # 26 fields
216
+ └── subfields/ # 252 subfields
217
+
218
+ index/
219
+ ├── entities/ # Small entity types (JSONL.gz: {id, n})
220
+ │ ├── concepts.jsonl.gz
221
+ │ ├── institutions.jsonl.gz
222
+ │ ├── sources.jsonl.gz
223
+ │ └── ... (9 files)
224
+ ├── mappings/ # Binary ID mappings (OpenAlex ID → compact ID)
225
+ │ ├── works.map.gz
226
+ │ ├── authors.map.gz
227
+ │ └── ... (5 files)
228
+ ├── authors/ # Author records (104 shards, JSONL.gz: {id, n})
229
+ ├── works/ # Work records (1,098 shards, JSONL.gz: {id, n})
230
+ ├── edges/ # Citation + collaboration edges (adjacency lists)
231
+ ├── adj/ # Compressed adjacency shards
232
+ └── search/ # Inverted word index for entity search
233
+
234
+ layout/
235
+ ├── coords-2d.bin # 2D force-directed layout coordinates (float32)
236
+ ├── coords-3d.bin # 3D force-directed layout coordinates (float32)
237
+ ├── layout-2d.json # Layout metadata
238
+ ├── layout-3d.json
239
+ └── density-2d.png # 4K density visualization
240
+
241
+ tiles/
242
+ ├── manifest.json
243
+ ├── lod/{dim}d/ # Level-of-detail with embedded coordinates
244
+ ├── nodes/ # Entity metadata by compact ID range
245
+ ├── coords/{dim}d/ # Position data by compact ID range
246
+ ├── spatial/{dim}d/ # Spatial index (Z-order curve tiles)
247
+ ├── edges/ # Edge tiles by source compact ID range
248
+ ├── lookup/ # Compact ID ↔ OpenAlex ID mapping
249
+ ├── names/ # Display name shards
250
+ ├── search/ # Symlinked from index/search
251
+ └── adj/ # Symlinked from index/adj
252
+ ```
253
+
254
+ ## File Formats
255
+
256
+ | Directory | Format | Description |
257
+ |-----------|--------|-------------|
258
+ | `index/entities/` | JSONL.gz | `{"id": <compact_id>, "n": "<display_name>"}` |
259
+ | `index/authors/` | JSONL.gz | `{"id": <compact_id>, "n": "<display_name>"}` |
260
+ | `index/works/` | JSONL.gz | `{"id": <compact_id>, "n": "<title>"}` |
261
+ | `index/mappings/` | Binary.gz | Sorted arrays of 8-byte integers (OpenAlex ID → compact ID) |
262
+ | `index/edges/` | Binary.gz | Adjacency lists (source → target compact IDs) |
263
+ | `tiles/nodes/` | Binary | Fixed-width entity metadata records |
264
+ | `tiles/coords/` | Binary | `float32[n × dim]` coordinate arrays |
265
+ | `tiles/spatial/` | Binary | Z-order spatial index (compact ID lists per tile) |
266
+ | `layout/coords-*.bin` | Binary | 32-byte header + `float32[n × dim]` |
267
+
268
+ ## Usage
269
+
270
+ These files are designed to be served statically over HTTP and consumed by a JavaScript client (e.g., [BibGraph](https://github.com/Mearman/BibGraph)). They are **not** intended for direct use via `datasets.load_dataset()`, though the JSONL entity indices can be loaded that way.
271
+
272
+ ### Load via datasets library
273
+
274
+ ```python
275
+ from datasets import load_dataset
276
+
277
+ # Load compact entity index
278
+ authors = load_dataset("Mearman/OpenAlex", "authors", split="index")
279
+ works = load_dataset("Mearman/OpenAlex", "works", split="index")
280
+
281
+ # Load full OpenAlex snapshot records
282
+ works_full = load_dataset("Mearman/OpenAlex", "snapshot-works", split="train")
283
+ topics_full = load_dataset("Mearman/OpenAlex", "snapshot-topics", split="train")
284
+
285
+ # Load search index
286
+ search = load_dataset("Mearman/OpenAlex", "search", split="train")
287
+ ```
288
+
289
+ ### Download specific directories
290
+
291
+ ```python
292
+ from huggingface_hub import snapshot_download
293
+
294
+ # Download just the entity index
295
+ snapshot_download(
296
+ "Mearman/OpenAlex",
297
+ repo_type="dataset",
298
+ allow_patterns="index/entities/*",
299
+ local_dir="./openalex",
300
+ )
301
+
302
+ # Download tiles for 2D visualization
303
+ snapshot_download(
304
+ "Mearman/OpenAlex",
305
+ repo_type="dataset",
306
+ allow_patterns=["tiles/manifest.json", "tiles/nodes/*", "tiles/coords/2d/*", "tiles/spatial/2d/*"],
307
+ local_dir="./openalex",
308
+ )
309
+ ```
310
+
311
+ ### Serve locally
312
+
313
+ ```bash
314
+ huggingface-cli download Mearman/OpenAlex --repo-type dataset --local-dir ./openalex
315
+ cd openalex && python3 -m http.server 8080
316
+ ```
317
+
318
+ ## Pipeline
319
+
320
+ Built using the OpenAlex Pipeline on [Supercomputing Wales](https://www.supercomputing.wales/) (Falcon cluster, 192-core AMD Genoa nodes) as part of PhD research at [Bangor University](https://www.bangor.ac.uk/):
321
+
322
+ 1. **Download** — S3 snapshot sync via rclone
323
+ 2. **Extract** — isal-accelerated gzip decompression
324
+ 3. **Index** — Parallel entity indexing, ID mapping, edge extraction, search index
325
+ 4. **Layout** — Multi-level coarsening + Barnes-Hut force-directed simulation (2D & 3D)
326
+ 5. **Tiles** — Dimension-agnostic spatial tiling for progressive client-side loading
327
+
328
+ ## License
329
+
330
+ The underlying OpenAlex data is [CC0 (public domain)](https://creativecommons.org/publicdomain/zero/1.0/). This processed derivative is released under the same license.
331
+
332
+ ## Status
333
+
334
+ 🚧 **In progress** — Raw snapshot and index (entities, mappings, authors, works) uploaded. Edges, search, layout, and tiles will be added as pipeline jobs complete.
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