# Server initial-data upload scope

Source: `/root/autodl-tmp/bio/` on `connect.cqa1.seetacloud.com`.

This package contains the server-side initial/source resources that were not
already present in the GraphResidual dataset repository:

- top-level ClinVar, Reactome, UniProt, PTM, GTEx, MC3, and final ClinVar tables;
- `brca_tcga_pan_can_atlas_2018/` source molecular and clinical tables;
- `clinvar_strict_rebuild_v1/` graph inputs, nodes, edges, mappings, splits,
  provenance tables, and removal ledgers;
- `clinvar_strict_rebuild_audit/` source manifests and audit tables;
- `inductive_graph_residual_extension/` inductive graph datasets, splits,
  feature inventories, and contracts;
- retained raw-download copies under `data_raw_download/`,
  `data_raw_partial/`, and `data_raw_scp/`.

Excluded from this upload: images and figures, logs, caches, Python bytecode,
code snapshots, model checkpoints, embeddings, predictions, and experiment-
only output directories. Empty disease-specific directories were not created
in the repository because they contain no files.