Hugging Face's logo

Datasets:
Marcochris
/
GraphResidual-data

Modalities:
Text
Tags:
graph-residual
protein
mutation
ptm
biomedical
License:
Dataset card Data Studio Files
xet
 Community
Marcochris commited on
Commit
892ca45
·
verified ·
1 Parent(s): ad7521e

Add files using upload-large-folder tool

Browse files
Files changed (44) hide show
  1. .gitattributes +36 -0
  2. data_benchmark/audit/mutation_ptm_direct_evidence.tsv +3 -0
  3. data_benchmark/clinvar_pathogenicity/excluded_records.tsv +3 -0
  4. data_benchmark/mutation_ptm/direct_positives.tsv +3 -0
  5. data_benchmark/mutation_ptm/silver_positives.tsv +3 -0
  6. data_benchmark/mutation_ptm/unlabeled_candidates.tsv +3 -0
  7. data_processed/edges_mutation_protein.tsv +3 -0
  8. data_processed/edges_protein_ptm.tsv +3 -0
  9. data_processed/labels/mutation_labels.tsv +3 -0
  10. data_processed/labels/ptm_labels.tsv +3 -0
  11. data_processed_clean/edges_disease_mutation.tsv +3 -0
  12. data_processed_clean/edges_disease_protein.tsv +3 -0
  13. data_processed_clean/edges_disease_ptm.tsv +3 -0
  14. data_processed_clean/edges_mutation_protein.tsv +3 -0
  15. data_processed_clean/edges_protein_ptm.tsv +3 -0
  16. data_processed_clean/labels/mutation_labels.tsv +3 -0
  17. data_processed_clean/labels/ptm_labels.tsv +3 -0
  18. data_processed_clean/nodes_mutation.tsv +3 -0
  19. data_processed_clean/nodes_ptm.tsv +3 -0
  20. data_processed_core/candidates/mutation_ptm_candidates.tsv +3 -0
  21. data_processed_core/edges_disease_mutation.tsv +3 -0
  22. data_processed_core/edges_disease_protein.tsv +3 -0
  23. data_processed_core/edges_disease_ptm.tsv +3 -0
  24. data_processed_core/edges_mutation_protein.tsv +3 -0
  25. data_processed_core/edges_protein_ptm.tsv +3 -0
  26. data_processed_core/labels/mutation_labels.tsv +3 -0
  27. data_processed_core/labels/ptm_labels.tsv +3 -0
  28. data_processed_core/nodes_mutation.tsv +3 -0
  29. data_processed_core/nodes_ptm.tsv +3 -0
  30. work/graph_core/edges/disease__has_mutation__mutation.tsv.gz +3 -0
  31. work/graph_core/edges/disease__has_protein__protein.tsv.gz +3 -0
  32. work/graph_core/edges/disease__has_ptm__ptm.tsv.gz +3 -0
  33. work/graph_core/edges/mutation__on_protein__protein.tsv.gz +3 -0
  34. work/graph_core/edges/protein__has_ptm__ptm.tsv.gz +3 -0
  35. work/graph_core/edges/protein__in_pathway__pathway.tsv.gz +3 -0
  36. work/graph_core/graph.pt +3 -0
  37. work/graph_core/node_mappings/mutation.tsv +3 -0
  38. work/graph_core/node_mappings/ptm.tsv +3 -0
  39. work/graph_full/edges/disease__has_mutation__mutation.tsv +3 -0
  40. work/graph_full/edges/mutation__in_gene__gene.tsv +3 -0
  41. work/graph_full/edges/mutation__on_protein__protein.tsv +3 -0
  42. work/graph_full/edges/protein__has_ptm__ptm.tsv +3 -0
  43. work/graph_full/nodes/mutation.tsv +3 -0
  44. work/graph_full/nodes/ptm.tsv +3 -0
.gitattributes CHANGED
@@ -67,3 +67,39 @@ data_processed/edges_disease_mutation.tsv filter=lfs diff=lfs merge=lfs -text
67
  data_processed/nodes_ptm.tsv filter=lfs diff=lfs merge=lfs -text
68
  data_processed/edges_disease_ptm.tsv filter=lfs diff=lfs merge=lfs -text
69
  data_processed/nodes_mutation.tsv filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
67
  data_processed/nodes_ptm.tsv filter=lfs diff=lfs merge=lfs -text
68
  data_processed/edges_disease_ptm.tsv filter=lfs diff=lfs merge=lfs -text
69
  data_processed/nodes_mutation.tsv filter=lfs diff=lfs merge=lfs -text
70
+ data_processed/edges_protein_ptm.tsv filter=lfs diff=lfs merge=lfs -text
71
+ data_processed/edges_mutation_protein.tsv filter=lfs diff=lfs merge=lfs -text
72
+ data_processed_clean/edges_disease_mutation.tsv filter=lfs diff=lfs merge=lfs -text
73
+ data_processed_clean/edges_disease_protein.tsv filter=lfs diff=lfs merge=lfs -text
74
+ data_processed_clean/nodes_mutation.tsv filter=lfs diff=lfs merge=lfs -text
75
+ data_processed_clean/nodes_ptm.tsv filter=lfs diff=lfs merge=lfs -text
76
+ data_processed_clean/edges_mutation_protein.tsv filter=lfs diff=lfs merge=lfs -text
77
+ data_processed_clean/edges_protein_ptm.tsv filter=lfs diff=lfs merge=lfs -text
78
+ data_processed_clean/edges_disease_ptm.tsv filter=lfs diff=lfs merge=lfs -text
79
+ data_processed_core/edges_disease_protein.tsv filter=lfs diff=lfs merge=lfs -text
80
+ data_processed_core/edges_disease_mutation.tsv filter=lfs diff=lfs merge=lfs -text
81
+ data_processed_core/nodes_ptm.tsv filter=lfs diff=lfs merge=lfs -text
82
+ data_processed_core/edges_disease_ptm.tsv filter=lfs diff=lfs merge=lfs -text
83
+ data_processed_core/nodes_mutation.tsv filter=lfs diff=lfs merge=lfs -text
84
+ data_processed_core/edges_protein_ptm.tsv filter=lfs diff=lfs merge=lfs -text
85
+ data_processed_core/edges_mutation_protein.tsv filter=lfs diff=lfs merge=lfs -text
86
+ data_benchmark/clinvar_pathogenicity/excluded_records.tsv filter=lfs diff=lfs merge=lfs -text
87
+ data_benchmark/audit/mutation_ptm_direct_evidence.tsv filter=lfs diff=lfs merge=lfs -text
88
+ data_benchmark/mutation_ptm/silver_positives.tsv filter=lfs diff=lfs merge=lfs -text
89
+ data_benchmark/mutation_ptm/direct_positives.tsv filter=lfs diff=lfs merge=lfs -text
90
+ data_benchmark/mutation_ptm/unlabeled_candidates.tsv filter=lfs diff=lfs merge=lfs -text
91
+ data_processed_core/labels/ptm_labels.tsv filter=lfs diff=lfs merge=lfs -text
92
+ data_processed_core/labels/mutation_labels.tsv filter=lfs diff=lfs merge=lfs -text
93
+ data_processed_core/candidates/mutation_ptm_candidates.tsv filter=lfs diff=lfs merge=lfs -text
94
+ work/graph_core/node_mappings/ptm.tsv filter=lfs diff=lfs merge=lfs -text
95
+ work/graph_core/node_mappings/mutation.tsv filter=lfs diff=lfs merge=lfs -text
96
+ work/graph_full/nodes/ptm.tsv filter=lfs diff=lfs merge=lfs -text
97
+ work/graph_full/nodes/mutation.tsv filter=lfs diff=lfs merge=lfs -text
98
+ work/graph_full/edges/mutation__on_protein__protein.tsv filter=lfs diff=lfs merge=lfs -text
99
+ work/graph_full/edges/protein__has_ptm__ptm.tsv filter=lfs diff=lfs merge=lfs -text
100
+ work/graph_full/edges/disease__has_mutation__mutation.tsv filter=lfs diff=lfs merge=lfs -text
101
+ work/graph_full/edges/mutation__in_gene__gene.tsv filter=lfs diff=lfs merge=lfs -text
102
+ data_processed_clean/labels/ptm_labels.tsv filter=lfs diff=lfs merge=lfs -text
103
+ data_processed/labels/ptm_labels.tsv filter=lfs diff=lfs merge=lfs -text
104
+ data_processed_clean/labels/mutation_labels.tsv filter=lfs diff=lfs merge=lfs -text
105
+ data_processed/labels/mutation_labels.tsv filter=lfs diff=lfs merge=lfs -text
data_benchmark/audit/mutation_ptm_direct_evidence.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:474daa3efb95700f8bb97f755778365741387f2ae78a553fa1f4842282024970
3
+ size 91718241
data_benchmark/clinvar_pathogenicity/excluded_records.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6b9384e77959b78c2f91cd57306966ced7bcbbf43d6011b7eda0103be9918b82
3
+ size 66611856
data_benchmark/mutation_ptm/direct_positives.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:cd29d98eabff705f1ec73ecb8d592c43c36d74d70dabeb04c9c200a6ff0b8628
3
+ size 104323497
data_benchmark/mutation_ptm/silver_positives.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9893b12ce2b181d90039828bb7d64e6f7804de2520754e1e3a31d0cc426f8a2b
3
+ size 101780131
data_benchmark/mutation_ptm/unlabeled_candidates.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a3f1fcf9415e4e020a4561b21a6cca7358c92e5468d642e5936423d88c514f7f
3
+ size 183890732
data_processed/edges_mutation_protein.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f3e7fc53bd63a11324d69c9d187595bd5ecc94ab2822f69a79a7407f01a8fe0d
3
+ size 302763621
data_processed/edges_protein_ptm.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e2ad3aa2302bdaf2f4c4af61afaced36126037235af25e5b0478479ee476172c
3
+ size 15334385
data_processed/labels/mutation_labels.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:22275a6823a10e11a97659d87572ff80f5c527b12463f98bcc330da23c921175
3
+ size 293649972
data_processed/labels/ptm_labels.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c172f8ac589b4919aa052022ce3e03073866d291cffff5e5363992d1add8baff
3
+ size 29391066
data_processed_clean/edges_disease_mutation.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5548e2f0b583a7fa445c473db8a22432b5382e02c1f29fb2c37ead385d3f2c56
3
+ size 221765340
data_processed_clean/edges_disease_protein.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:84e37046a86fc44f6d89b1c3934c2cd689d62bbbcb3d407e062bd6c43bfa1f65
3
+ size 28005310
data_processed_clean/edges_disease_ptm.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6657dab5d71500dd2d39b99d9890d6341db57f11038d494a03246ca57969e39c
3
+ size 28683461
data_processed_clean/edges_mutation_protein.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f3e7fc53bd63a11324d69c9d187595bd5ecc94ab2822f69a79a7407f01a8fe0d
3
+ size 302763621
data_processed_clean/edges_protein_ptm.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e2ad3aa2302bdaf2f4c4af61afaced36126037235af25e5b0478479ee476172c
3
+ size 15334385
data_processed_clean/labels/mutation_labels.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:22275a6823a10e11a97659d87572ff80f5c527b12463f98bcc330da23c921175
3
+ size 293649972
data_processed_clean/labels/ptm_labels.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c172f8ac589b4919aa052022ce3e03073866d291cffff5e5363992d1add8baff
3
+ size 29391066
data_processed_clean/nodes_mutation.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f2e791e20d83876a084ecca0f96fb8518b75d8573b12bd1d0cadc767ea8c1916
3
+ size 369185068
data_processed_clean/nodes_ptm.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7bb9a52ceea0f3388b18e2ff4dee5ce51a540280c4a2ec84ea002e3e26e6526e
3
+ size 14748172
data_processed_core/candidates/mutation_ptm_candidates.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:eb0a93db160adba42a9807ce7a7cf8f3b4a2883cb0e6fa93a2ece875cf917931
3
+ size 169991599
data_processed_core/edges_disease_mutation.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1df00629565f774144ac8b76f06222372084835bdf724c6a1b268a95ba96e251
3
+ size 104814976
data_processed_core/edges_disease_protein.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:008d1b700529d01ade75cef78a3bb298309ce2ec6d6a745b8f6676897ce4db18
3
+ size 24200151
data_processed_core/edges_disease_ptm.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4ef788938b822c48262853ad85ed96cd859ed8ebe9d725c73048e612cc603b71
3
+ size 28496417
data_processed_core/edges_mutation_protein.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5e7f41c14224e6943b78c5c95a073949d1d57c3ef21664cb7c6911f7ed64f6b1
3
+ size 69453890
data_processed_core/edges_protein_ptm.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d0da3c70da1d60bb36c52231657853fa7c1862c3f5f7c80beedf7cc1f1dc2932
3
+ size 13642013
data_processed_core/labels/mutation_labels.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ccbe557641b6cc066cd007f496c3139e3a24db7eef04a1697d1f6a54ba4c46c3
3
+ size 63360371
data_processed_core/labels/ptm_labels.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:376f0cc1f497011eb36ed3cc3f0e049f870be4b6fdb906791510896b35d461cd
3
+ size 29346747
data_processed_core/nodes_mutation.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:48e33f572b4663d8f9e90a91784feb35b44d372188b0cc9c12090023d60be9ba
3
+ size 131158839
data_processed_core/nodes_ptm.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d079895b62c2203c0ef00306ec876593bdcceb34cf8b6188c12008bbbb908546
3
+ size 17540938
work/graph_core/edges/disease__has_mutation__mutation.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9c77a6fb958aa915c4b81307465d033d35b9b098edb960385ba47a4397cd6476
3
+ size 3394221
work/graph_core/edges/disease__has_protein__protein.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ace23f41bfc15a97c40df13e3b6442811fb245b606754827f886b5b545cbc023
3
+ size 804862
work/graph_core/edges/disease__has_ptm__ptm.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8aa1f73e6b115160f577bd5dc65f3528123ab3681e3d5cce1e033a631f130e1f
3
+ size 793738
work/graph_core/edges/mutation__on_protein__protein.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3efd32ce2d52189f3364752bf0ba32fbf0e1d2df363a6b21ab6d3c995b9fb5ca
3
+ size 2220755
work/graph_core/edges/protein__has_ptm__ptm.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0239069d4a7cdf519a9768c7a5b22a9cb8224677bf53af035e12cf252a3806d8
3
+ size 306577
work/graph_core/edges/protein__in_pathway__pathway.tsv.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d5b92cb308ee685d57791fa85917d1cd69f66074c8587c1146fe1524f71bdbf1
3
+ size 320567
work/graph_core/graph.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:531696e85ecc1ae250eeae95fda2e4de2bf784ea34f6ec023ad44ca22d3305dc
3
+ size 103326482
work/graph_core/node_mappings/mutation.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7cb1323ade1ec8e1cb6eb55119491b80cbf0dce7da7b3539942358712a70f99f
3
+ size 117688486
work/graph_core/node_mappings/ptm.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e9e74aa901af97d0f8796d613c2eb348015bf348b6a3c04c369ce7a5cac99486
3
+ size 18593855
work/graph_full/edges/disease__has_mutation__mutation.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a167fbc38350e86ed13e9665457be062246df5580459d75d1cf63982c6b5fb8c
3
+ size 26040889
work/graph_full/edges/mutation__in_gene__gene.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f98cd89fbe9f135103ff82919d52c3fe661bd9b9b8616933d949a9d5e5268c21
3
+ size 26926912
work/graph_full/edges/mutation__on_protein__protein.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8455ececde06859af5dabde89a55d68d1b0c93c4ae3b4b98bfbdb6ee24a58955
3
+ size 26017817
work/graph_full/edges/protein__has_ptm__ptm.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8c066a06ddc92c73f7d02265fe8e3df29c7717b70620db8c2d793d07a15b1c84
3
+ size 20045680
work/graph_full/nodes/mutation.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a002c60592e47f3450a3047da990f49fb16ffe21b0855f82ec7fe7decc475bcf
3
+ size 63749987
work/graph_full/nodes/ptm.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5569562c51905b6b01ba54b92f40ba669b1a8c373500ca31e3c4ccccff5b4a3c
3
+ size 38211324