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  1. configs/001_rm_bench_test/editable.txt +0 -0
  2. configs/001_rm_bench_test/env.yml +111 -0
  3. configs/001_rm_bench_test/explicit.txt +94 -0
  4. configs/001_rm_bench_test/meta.json +8 -0
  5. configs/001_rm_bench_test/pip-clean.txt +445 -0
  6. configs/001_rm_bench_test/pip-freeze.txt +457 -0
  7. configs/006_map_alignment_test/editable.txt +1 -0
  8. configs/006_map_alignment_test/env.yml +109 -0
  9. configs/006_map_alignment_test/explicit.txt +94 -0
  10. configs/006_map_alignment_test/meta.json +8 -0
  11. configs/006_map_alignment_test/pip-clean.txt +451 -0
  12. configs/006_map_alignment_test/pip-freeze.txt +463 -0
  13. configs/007_spa_test/editable.txt +0 -0
  14. configs/007_spa_test/env.yml +98 -0
  15. configs/007_spa_test/explicit.txt +94 -0
  16. configs/007_spa_test/meta.json +8 -0
  17. configs/007_spa_test/pip-clean.txt +444 -0
  18. configs/007_spa_test/pip-freeze.txt +456 -0
  19. configs/011_gp_hdbo_test/editable.txt +0 -0
  20. configs/011_gp_hdbo_test/env.yml +42 -0
  21. configs/011_gp_hdbo_test/explicit.txt +31 -0
  22. configs/011_gp_hdbo_test/meta.json +8 -0
  23. configs/011_gp_hdbo_test/pip-clean.txt +448 -0
  24. configs/011_gp_hdbo_test/pip-freeze.txt +448 -0
  25. configs/015_guidance_free_ar_generation_test/editable.txt +0 -0
  26. configs/015_guidance_free_ar_generation_test/env.yml +47 -0
  27. configs/015_guidance_free_ar_generation_test/explicit.txt +31 -0
  28. configs/015_guidance_free_ar_generation_test/meta.json +8 -0
  29. configs/015_guidance_free_ar_generation_test/pip-clean.txt +450 -0
  30. configs/015_guidance_free_ar_generation_test/pip-freeze.txt +450 -0
  31. configs/029_test/editable.txt +0 -0
  32. configs/029_test/env.yml +66 -0
  33. configs/029_test/explicit.txt +31 -0
  34. configs/029_test/meta.json +8 -0
  35. configs/029_test/pip-clean.txt +464 -0
  36. configs/029_test/pip-freeze.txt +464 -0
  37. configs/030_test/editable.txt +0 -0
  38. configs/030_test/env.yml +55 -0
  39. configs/030_test/explicit.txt +31 -0
  40. configs/030_test/meta.json +8 -0
  41. configs/030_test/pip-clean.txt +455 -0
  42. configs/030_test/pip-freeze.txt +455 -0
  43. configs/040_test/editable.txt +0 -0
  44. configs/040_test/env.yml +52 -0
  45. configs/040_test/explicit.txt +31 -0
  46. configs/040_test/meta.json +8 -0
  47. configs/040_test/pip-clean.txt +454 -0
  48. configs/040_test/pip-freeze.txt +454 -0
  49. configs/043_test/editable.txt +0 -0
  50. configs/043_test/env.yml +75 -0
configs/001_rm_bench_test/editable.txt ADDED
File without changes
configs/001_rm_bench_test/env.yml ADDED
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1
+ name: 001_rm_bench_test
2
+ channels:
3
+ - conda-forge
4
+ - defaults
5
+ dependencies:
6
+ - _libgcc_mutex=0.1
7
+ - _openmp_mutex=4.5
8
+ - blas=2.136
9
+ - blas-devel=3.9.0
10
+ - brotli-python=1.1.0
11
+ - bzip2=1.0.8
12
+ - ca-certificates=2026.4.22
13
+ - certifi=2024.2.2
14
+ - colorama=0.4.6
15
+ - cycler=0.12.1
16
+ - freetype=2.14.1
17
+ - idna=3.10
18
+ - joblib=1.4.2
19
+ - kiwisolver=1.4.4
20
+ - lcms2=2.17
21
+ - ld_impl_linux-64=2.44
22
+ - lerc=4.0.0
23
+ - libblas=3.9.0
24
+ - libcblas=3.9.0
25
+ - libdeflate=1.24
26
+ - libffi=3.4.6
27
+ - libfreetype=2.14.1
28
+ - libfreetype6=2.14.1
29
+ - libgcc=15.1.0
30
+ - libgcc-ng=15.1.0
31
+ - libgfortran=15.1.0
32
+ - libgfortran-ng=15.1.0
33
+ - libgfortran5=15.1.0
34
+ - libgomp=15.1.0
35
+ - libjpeg-turbo=3.1.0
36
+ - liblapack=3.9.0
37
+ - liblapacke=3.9.0
38
+ - liblzma=5.8.1
39
+ - liblzma-devel=5.8.1
40
+ - libnsl=2.0.1
41
+ - libopenblas=0.3.30
42
+ - libpng=1.6.50
43
+ - libsqlite=3.50.4
44
+ - libstdcxx=15.1.0
45
+ - libstdcxx-ng=15.1.0
46
+ - libtiff=4.7.1
47
+ - libuuid=2.41.2
48
+ - libwebp-base=1.6.0
49
+ - libxcb=1.17.0
50
+ - libxcrypt=4.4.36
51
+ - libzlib=1.3.1
52
+ - matplotlib-base=3.4.3
53
+ - ncurses=6.5
54
+ - networkx=2.8.8
55
+ - numpy=1.24.4
56
+ - openblas=0.3.30
57
+ - openjpeg=2.5.4
58
+ - openssl=3.6.2
59
+ - packaging=25.0
60
+ - pandas=2.0.3
61
+ - patsy=0.5.6
62
+ - pillow=10.4.0
63
+ - pip=22.1.2
64
+ - plotly=5.24.1
65
+ - pthread-stubs=0.4
66
+ - pyparsing=3.1.4
67
+ - pysocks=1.7.1
68
+ - python=3.8.20
69
+ - python-dateutil=2.8.2
70
+ - python-tzdata=2025.2
71
+ - python_abi=3.8
72
+ - pytz=2024.2
73
+ - readline=8.2
74
+ - scikit-learn=1.3.2
75
+ - scipy=1.9.3
76
+ - seaborn=0.13.2
77
+ - seaborn-base=0.13.2
78
+ - setuptools=70.3.0
79
+ - statsmodels=0.13.5
80
+ - tenacity=8.5.0
81
+ - threadpoolctl=3.3.0
82
+ - tk=8.6.13
83
+ - tornado=6.2
84
+ - tqdm=4.67.1
85
+ - wheel=0.45.1
86
+ - xorg-libxau=1.0.12
87
+ - xorg-libxdmcp=1.1.5
88
+ - xz=5.8.1
89
+ - xz-gpl-tools=5.8.1
90
+ - xz-tools=5.8.1
91
+ - zstd=1.5.7
92
+ - pip:
93
+ - attrs==25.3.0
94
+ - charset-normalizer==3.4.3
95
+ - dill==0.3.8
96
+ - filelock==3.16.1
97
+ - fsspec==2025.3.0
98
+ - jinja2==3.1.6
99
+ - markupsafe==2.1.5
100
+ - multiprocess==0.70.16
101
+ - pyarrow==17.0.0
102
+ - pyyaml==6.0.3
103
+ - requests==2.32.4
104
+ - six==1.17.0
105
+ - tokenizers==0.20.3
106
+ - torch==2.4.1+cpu
107
+ - transformers==4.46.3
108
+ - typing-extensions==4.13.2
109
+ - urllib3==2.2.3
110
+ - websockets==13.1
111
+ prefix: /home/lily/yz979/anaconda3/envs/001_rm_bench_test
configs/001_rm_bench_test/explicit.txt ADDED
@@ -0,0 +1,94 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # This file may be used to create an environment using:
2
+ # $ conda create --name <env> --file <this file>
3
+ # platform: linux-64
4
+ @EXPLICIT
5
+ https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
6
+ https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.4.22-hbd8a1cb_0.conda#e18ad67cf881dcadee8b8d9e2f8e5f73
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+ https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.44-ha97dd6f_2.conda#14bae321b8127b63cba276bd53fac237
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401
+ torchtext==0.4.0
402
+ tornado==6.4
403
+ tqdm==4.67.1
404
+ transformer-lens==2.16.1
405
+ transformers==4.46.3
406
+ transformers-stream-generator==0.0.5
407
+ typed-argument-parser==1.10.1
408
+ typeguard==4.4.0
409
+ typer==0.9.4
410
+ types-requests==2.31.0.20240406
411
+ typing-inspect==0.9.0
412
+ typing-utils==0.1.0
413
+ typing_extensions==4.13.2
414
+ tzdata==2024.1
415
+ tzlocal==5.2
416
+ umap-learn==0.5.7
417
+ Unidecode==1.3.2
418
+ unittest-xml-reporting==3.2.0
419
+ unstructured==0.11.0
420
+ unstructured-client==0.22.0
421
+ unstructured-inference==0.7.15
422
+ unstructured.pytesseract==0.3.12
423
+ uvicorn==0.29.0
424
+ uvloop==0.21.0
425
+ validators==0.28.1
426
+ vllm==0.2.7
427
+ vtk==9.3.1
428
+ wandb==0.22.0
429
+ watchdog==3.0.0
430
+ watchfiles==0.21.0
431
+ wavedrom==2.0.3.post3
432
+ weasel==0.3.4
433
+ websocket-client==1.8.0
434
+ websockets==13.1
435
+ Werkzeug==2.0.2
436
+ word2number==1.1
437
+ xlrd==2.0.1
438
+ XlsxWriter==3.0.2
439
+ xxhash==2.0.2
440
+ Yapsy==1.12.2
441
+ yarl==1.15.2
442
+ youtube-search==2.1.2
443
+ zipp==3.20.2
444
+ zope.event==4.5.0
445
+ zstandard==0.23.0
configs/001_rm_bench_test/pip-freeze.txt ADDED
@@ -0,0 +1,457 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ absl-py==2.3.1
2
+ accelerate==0.24.1
3
+ aiofiles==23.2.1
4
+ aiohappyeyeballs==2.4.4
5
+ aiohttp==3.10.11
6
+ aioprometheus==23.12.0
7
+ aiosignal==1.3.1
8
+ alabaster==0.7.12
9
+ allennlp==0.8.4
10
+ altair==5.3.0
11
+ annotated-types==0.6.0
12
+ anyio==3.7.1
13
+ APScheduler==3.11.2
14
+ arxiv==2.1.0
15
+ astunparse==1.6.3
16
+ async-timeout==4.0.3
17
+ attrs==25.3.0
18
+ autograd==1.7.0
19
+ autoray==0.6.12
20
+ awscli==1.32.93
21
+ azure-core==1.33.0
22
+ azure-identity==1.21.0
23
+ azure-storage-blob==12.26.0
24
+ Babel==2.9.1
25
+ backoff==2.2.1
26
+ backports.zoneinfo==0.2.1
27
+ bcrypt==4.1.2
28
+ beartype==0.14.1
29
+ better-abc==0.0.3
30
+ biopython==1.83
31
+ bitarray==2.5.1
32
+ bitsandbytes==0.43.1
33
+ blessed==1.20.0
34
+ blis==0.7.11
35
+ boto3==1.36.0
36
+ botocore==1.36.26
37
+ botorch==0.8.5
38
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39
+ Brotli==1.1.0
40
+ bs4==0.0.2
41
+ cachetools==4.2.4
42
+ certifi @ file:///home/conda/feedstock_root/build_artifacts/certifi_1707022139797/work/certifi
43
+ cffi==1.15.0
44
+ cftime==1.6.4.post1
45
+ chaospy==3.3.9
46
+ charset-normalizer==3.4.7
47
+ chex==0.1.7
48
+ chroma-hnswlib==0.7.3
49
+ chromadb==0.4.15
50
+ click==8.1.7
51
+ cloudpathlib==0.16.0
52
+ cobra==0.29.1
53
+ cohere==5.3.3
54
+ colorama @ file:///home/conda/feedstock_root/build_artifacts/colorama_1666700638685/work
55
+ coloredlogs==15.0.1
56
+ confection==0.1.4
57
+ ConfigArgParse==1.5.3
58
+ conllu==0.11
59
+ coverage==7.6.1
60
+ cpm-kernels==1.0.11
61
+ cryptography==42.0.5
62
+ cvxopt==1.3.2
63
+ cycler @ file:///home/conda/feedstock_root/build_artifacts/cycler_1696677705766/work
64
+ cymem==2.0.8
65
+ Cython==0.29.30
66
+ dataclasses==0.6
67
+ dataclasses-json==0.6.4
68
+ datasets==2.19.0
69
+ deepdiff==7.0.1
70
+ Deprecated==1.2.14
71
+ deprecation==2.1.0
72
+ dill==0.3.8
73
+ distro==1.9.0
74
+ dm-tree==0.1.8
75
+ dnspython==2.6.1
76
+ docstring_parser==0.17.0
77
+ docutils==0.15.2
78
+ dotenv==0.9.9
79
+ duckduckgo-search==3.9.9
80
+ editdistance==0.6.0
81
+ effdet==0.4.1
82
+ einops==0.7.0
83
+ email-validator==2.3.0
84
+ emoji==2.11.1
85
+ equinox==0.10.4
86
+ et-xmlfile==1.1.0
87
+ eval_type_backport==0.2.2
88
+ exceptiongroup==1.2.1
89
+ fairseq==0.10.2
90
+ faiss-cpu==1.7.4
91
+ faiss-gpu==1.7.2
92
+ fancy-einsum==0.0.3
93
+ fastapi==0.115.14
94
+ fastapi-sso==0.16.0
95
+ fastavro==1.9.4
96
+ fastuuid==0.13.5
97
+ fbpca==1.0
98
+ feedparser==6.0.10
99
+ ffmpy==0.3.2
100
+ filelock==3.16.1
101
+ filetype==1.2.0
102
+ finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
103
+ flaky==3.7.0
104
+ Flask-Cors==3.0.10
105
+ frozenlist==1.4.1
106
+ fschat==0.2.35
107
+ fsspec==2025.3.0
108
+ ftfy==6.0.3
109
+ future==0.18.2
110
+ fuzzywuzzy==0.18.0
111
+ gdown==5.2.0
112
+ geosketch==1.3
113
+ geotorch==0.3.0
114
+ get-annotations==0.1.2
115
+ gevent==21.12.0
116
+ gitdb==4.0.11
117
+ GitPython==3.1.43
118
+ google-pasta==0.2.0
119
+ googleapis-common-protos==1.63.0
120
+ gpustat==1.1.1
121
+ gpytorch==1.10
122
+ gradio_client==0.16.0
123
+ graphlib_backport==1.1.0
124
+ greenlet==1.1.2
125
+ gunicorn==23.0.0
126
+ h11==0.14.0
127
+ h2==4.1.0
128
+ hf-xet==1.2.0
129
+ hf_transfer==0.1.9
130
+ hpack==4.0.0
131
+ httpcore==1.0.5
132
+ httptools==0.6.1
133
+ httpx==0.28.1
134
+ httpx-sse==0.4.0
135
+ huggingface_hub==0.36.1
136
+ humanfriendly==10.0
137
+ hyperframe==6.0.1
138
+ icetk==0.0.4
139
+ idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1726459485162/work
140
+ igraph==0.11.8
141
+ imageio==2.35.1
142
+ imagesize==1.3.0
143
+ imgaug==0.4.0
144
+ importlib-metadata==7.0.0
145
+ importlib_resources==6.4.5
146
+ inequalipy==1.0.5
147
+ iniconfig==1.1.1
148
+ inquirerpy==0.3.4
149
+ iopath==0.1.10
150
+ isodate==0.7.2
151
+ itsdangerous==2.0.1
152
+ jax==0.4.13
153
+ jaxlib==0.4.13
154
+ jaxtyping==0.2.19
155
+ Jinja2==3.1.6
156
+ jiter==0.9.1
157
+ jmespath==0.10.0
158
+ joblib==1.4.2
159
+ jsonnet==0.17.0
160
+ jsonpatch==1.33
161
+ jsonpath-python==1.0.6
162
+ jsonpickle==2.0.0
163
+ jsonschema==4.23.0
164
+ jsonschema-specifications==2023.12.1
165
+ kaggle==1.7.4.5
166
+ Keras-Preprocessing==1.1.2
167
+ kiwisolver @ file:///croot/kiwisolver_1672387140495/work
168
+ kubernetes==29.0.0
169
+ langchain==0.1.16
170
+ langchain-community==0.0.34
171
+ langchain-core==0.1.46
172
+ langchain-experimental==0.0.57
173
+ langchain-text-splitters==0.0.1
174
+ langcodes==3.4.0
175
+ langdetect==1.0.9
176
+ langsmith==0.1.51
177
+ language_data==1.2.0
178
+ layoutparser==0.3.4
179
+ lazy_loader==0.4
180
+ leidenalg==0.10.2
181
+ Levenshtein==0.25.1
182
+ linear-operator==0.4.0
183
+ litellm==1.77.4
184
+ litellm-enterprise==0.1.20
185
+ litellm-proxy-extras==0.2.19
186
+ llama-index==0.9.35
187
+ llvmlite==0.41.1
188
+ lmdb==1.7.3
189
+ lxml==5.2.1
190
+ madoka==0.7.1
191
+ marisa-trie==1.1.0
192
+ Markdown==3.3.6
193
+ markdown-it-py==3.0.0
194
+ markdown2==2.4.13
195
+ markdownify==0.11.6
196
+ MarkupSafe==2.1.5
197
+ marshmallow==3.21.1
198
+ matplotlib @ file:///home/conda/feedstock_root/build_artifacts/matplotlib-suite_1632416634429/work
199
+ mdtex2html==1.3.0
200
+ mdurl==0.1.2
201
+ metaphor-python==0.1.23
202
+ ml-dtypes==0.2.0
203
+ monotonic==1.6
204
+ mrcfile==1.5.4
205
+ msal==1.36.0
206
+ msal-extensions==1.3.0
207
+ msg-parser==1.2.0
208
+ msgpack==1.0.8
209
+ msgpack-numpy==0.4.3.2
210
+ multidict==6.0.5
211
+ multipledispatch==1.0.0
212
+ multiprocess==0.70.16
213
+ murmurhash==1.0.10
214
+ mypy-extensions==1.0.0
215
+ narwhals==1.42.1
216
+ natsort==8.4.0
217
+ nest-asyncio==1.6.0
218
+ netCDF4==1.7.2
219
+ networkx @ file:///home/conda/feedstock_root/build_artifacts/networkx_1667391556261/work
220
+ neuroHarmonize==2.4.5
221
+ nh3==0.2.17
222
+ ninja==1.11.1.1
223
+ nltk==3.8.1
224
+ numba==0.58.1
225
+ numexpr==2.8.6
226
+ numpoly==1.0.6
227
+ numpy @ file:///home/conda/feedstock_root/build_artifacts/numpy_1687808301083/work
228
+ numpydoc==1.1.0
229
+ nvidia-ml-py==12.535.133
230
+ nvitop==1.3.2
231
+ oauthlib==3.2.2
232
+ onnx==1.16.0
233
+ onnxruntime==1.15.1
234
+ openai==1.101.0
235
+ openpyxl==3.0.9
236
+ opentelemetry-api==1.24.0
237
+ opentelemetry-exporter-otlp-proto-common==1.24.0
238
+ opentelemetry-exporter-otlp-proto-grpc==1.24.0
239
+ opentelemetry-proto==1.24.0
240
+ opentelemetry-sdk==1.24.0
241
+ opentelemetry-semantic-conventions==0.45b0
242
+ opt-einsum==3.3.0
243
+ optax==0.1.5
244
+ ordered-set==4.1.0
245
+ orjson==3.10.1
246
+ overrides==7.7.0
247
+ packaging==26.2
248
+ pandas==2.0.3
249
+ pandas-stubs==1.2.0.45
250
+ parsimonious==0.8.1
251
+ pathlib==1.0.1
252
+ patsy==1.0.1
253
+ pdf2image==1.17.0
254
+ pfzy==0.3.4
255
+ PICOS==2.6.1
256
+ pikepdf==8.4.1
257
+ pillow @ file:///home/conda/feedstock_root/build_artifacts/pillow_1719903565503/work
258
+ pip-search==0.0.12
259
+ pkgutil_resolve_name==1.3.10
260
+ plac==0.9.6
261
+ plotly==6.3.0
262
+ pluggy==1.5.0
263
+ ply==3.11
264
+ pondpond==1.4.1
265
+ pooch==1.8.2
266
+ portalocker==2.4.0
267
+ posthog==3.5.0
268
+ preshed==3.0.9
269
+ prettytable==3.11.0
270
+ primer3-py==2.2.0
271
+ prompt-toolkit==3.0.43
272
+ propcache==0.2.0
273
+ PuLP==3.1.1
274
+ pulsar-client==3.5.0
275
+ pyarrow==17.0.0
276
+ pyarrow-hotfix==0.6
277
+ pyclipper==1.3.0.post5
278
+ pycocotools==2.0.7
279
+ pycparser==2.21
280
+ pydantic==2.10.6
281
+ pydantic_core==2.27.2
282
+ pydeck==0.9.0b1
283
+ pyDOE2==1.3.0
284
+ pydub==0.25.1
285
+ pyfaidx==0.9.0.1
286
+ Pygments==2.19.2
287
+ PyJWT==2.8.0
288
+ pymodbus==3.6.9
289
+ PyMuPDF==1.23.16
290
+ PyMuPDFb==1.23.9
291
+ PyNaCl==1.6.2
292
+ pynndescent==0.5.13
293
+ Pyomo==6.8.2
294
+ pyOpenSSL==24.1.0
295
+ pypandoc==1.13
296
+ pyparsing @ file:///home/conda/feedstock_root/build_artifacts/pyparsing_1724616129934/work
297
+ pypdf==4.2.0
298
+ pypdfium2==4.29.0
299
+ PyPika==0.48.9
300
+ PyQt5==5.15.7
301
+ PyQt5-Qt5==5.15.17
302
+ PyQt5_sip==12.15.0
303
+ pyro-api==0.1.2
304
+ pyro-ppl==1.9.1
305
+ pysam==0.23.3
306
+ PySocks==1.7.1
307
+ pysqlite3-binary==0.5.2.post3
308
+ pystan==2.19.1.1
309
+ pytesseract==0.3.10
310
+ pytest-cov==5.0.0
311
+ python-dateutil==2.9.0.post0
312
+ python-decouple==3.8
313
+ python-docx==1.1.0
314
+ python-dotenv==1.0.1
315
+ python-iso639==2024.4.27
316
+ python-Levenshtein==0.25.1
317
+ python-multipart==0.0.18
318
+ python-pptx==0.6.23
319
+ python-slugify==8.0.4
320
+ pytorch-pretrained-bert==0.6.2
321
+ pytz==2025.2
322
+ pyvista==0.44.2
323
+ PyWavelets==1.4.1
324
+ PyYAML==6.0.3
325
+ quantile-python==1.1
326
+ rapidfuzz==3.8.1
327
+ rapidocr-onnxruntime==1.3.8
328
+ ray==2.10.0
329
+ rdkit==2024.3.5
330
+ redis==6.1.1
331
+ referencing==0.35.1
332
+ regex==2022.4.24
333
+ requests==2.32.4
334
+ requests-oauthlib==1.3.0
335
+ responses==0.16.0
336
+ rich==13.7.1
337
+ rouge-score==0.1.2
338
+ rpds-py==0.20.1
339
+ rq==2.3.3
340
+ rsa==4.7.2
341
+ ruff==0.4.2
342
+ rustworkx==0.15.1
343
+ s3transfer==0.11.3
344
+ sacrebleu==2.1.0
345
+ sacremoses==0.0.46
346
+ safetensors==0.4.3
347
+ scikit-learn @ file:///home/conda/feedstock_root/build_artifacts/scikit-learn_1701931997682/work
348
+ scipy==1.9.3
349
+ scooby==0.10.1
350
+ seaborn==0.13.2
351
+ semantic-version==2.10.0
352
+ sentence-transformers==2.2.2
353
+ sentencepiece==0.1.91
354
+ sentry-sdk==2.39.0
355
+ session_info==1.0.1
356
+ sgmllib3k==1.0.0
357
+ shapely==2.0.4
358
+ shellingham==1.5.4
359
+ shortuuid==1.0.13
360
+ six==1.17.0
361
+ smart-open==6.4.0
362
+ smmap==5.0.1
363
+ sniffio==1.3.1
364
+ snowballstemmer==2.2.0
365
+ sobol-seq==0.2.0
366
+ socksio==1.0.0
367
+ soupsieve==2.5
368
+ spacy-legacy==3.0.12
369
+ spacy-loggers==1.0.5
370
+ Sphinx==4.3.1
371
+ sphinxcontrib-applehelp==1.0.2
372
+ sphinxcontrib-devhelp==1.0.2
373
+ sphinxcontrib-htmlhelp==2.0.0
374
+ sphinxcontrib-jsmath==1.0.1
375
+ sphinxcontrib-qthelp==1.0.3
376
+ sphinxcontrib-serializinghtml==1.1.5
377
+ SQLAlchemy==2.0.19
378
+ sqlparse==0.4.2
379
+ sse-starlette==1.8.2
380
+ starlette==0.44.0
381
+ statsmodels==0.14.1
382
+ stdlib-list==0.10.0
383
+ streamlit==1.30.0
384
+ streamlit-aggrid==0.3.4.post3
385
+ streamlit-antd-components==0.3.1
386
+ streamlit-chatbox==1.1.11
387
+ streamlit-feedback==0.1.3
388
+ streamlit-modal==0.1.0
389
+ streamlit-option-menu==0.3.12
390
+ strsimpy==0.2.1
391
+ svgwrite==1.4.3
392
+ tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
393
+ tabulate==0.8.9
394
+ tenacity==8.2.3
395
+ tensorboard-plugin-wit==1.8.0
396
+ tensorboardX==2.4.1
397
+ text-unidecode==1.3
398
+ texttable==1.7.0
399
+ thefuzz==0.22.1
400
+ threadpoolctl==3.5.0
401
+ tifffile==2023.7.10
402
+ tiktoken==0.7.0
403
+ timm==0.9.16
404
+ tk==0.1.0
405
+ tokenizers==0.20.3
406
+ toml==0.10.2
407
+ tomlkit==0.12.0
408
+ toolz==0.12.1
409
+ torch==2.4.1+cpu
410
+ torch-geometric==2.6.1
411
+ torchaudio==2.1.2+cu118
412
+ torchtext==0.4.0
413
+ tornado==6.4
414
+ tqdm==4.67.1
415
+ transformer-lens==2.16.1
416
+ transformers==4.46.3
417
+ transformers-stream-generator==0.0.5
418
+ typed-argument-parser==1.10.1
419
+ typeguard==4.4.0
420
+ typer==0.9.4
421
+ types-requests==2.31.0.20240406
422
+ typing-inspect==0.9.0
423
+ typing-utils==0.1.0
424
+ typing_extensions==4.13.2
425
+ tzdata==2024.1
426
+ tzlocal==5.2
427
+ umap-learn==0.5.7
428
+ Unidecode==1.3.2
429
+ unittest-xml-reporting==3.2.0
430
+ unstructured==0.11.0
431
+ unstructured-client==0.22.0
432
+ unstructured-inference==0.7.15
433
+ unstructured.pytesseract==0.3.12
434
+ urllib3 @ file:///home/conda/feedstock_root/build_artifacts/urllib3_1708239446578/work
435
+ uvicorn==0.29.0
436
+ uvloop==0.21.0
437
+ validators==0.28.1
438
+ vllm==0.2.7
439
+ vtk==9.3.1
440
+ wandb==0.22.0
441
+ watchdog==3.0.0
442
+ watchfiles==0.21.0
443
+ wavedrom==2.0.3.post3
444
+ weasel==0.3.4
445
+ websocket-client==1.8.0
446
+ websockets==13.1
447
+ Werkzeug==2.0.2
448
+ word2number==1.1
449
+ xlrd==2.0.1
450
+ XlsxWriter==3.0.2
451
+ xxhash==2.0.2
452
+ Yapsy==1.12.2
453
+ yarl==1.15.2
454
+ youtube-search==2.1.2
455
+ zipp==3.20.2
456
+ zope.event==4.5.0
457
+ zstandard==0.23.0
configs/006_map_alignment_test/editable.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ alignmap.egg-link /data/lily/yz979/xx/MMSciCode/tmp_agentic/mmsci_6n2wjd1z/006_MAP_Multi-Human-Value_Alignment_Palette/code
configs/006_map_alignment_test/env.yml ADDED
@@ -0,0 +1,109 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ name: 006_map_alignment_test
2
+ channels:
3
+ - conda-forge
4
+ - defaults
5
+ dependencies:
6
+ - _libgcc_mutex=0.1
7
+ - _openmp_mutex=4.5
8
+ - blas=2.136
9
+ - blas-devel=3.9.0
10
+ - brotli-python=1.1.0
11
+ - bzip2=1.0.8
12
+ - ca-certificates=2025.8.3
13
+ - certifi=2024.2.2
14
+ - charset-normalizer=3.3.2
15
+ - colorama=0.4.6
16
+ - cycler=0.12.1
17
+ - freetype=2.14.1
18
+ - idna=3.10
19
+ - joblib=1.4.2
20
+ - kiwisolver=1.4.4
21
+ - lcms2=2.17
22
+ - ld_impl_linux-64=2.44
23
+ - lerc=4.0.0
24
+ - libblas=3.9.0
25
+ - libcblas=3.9.0
26
+ - libdeflate=1.24
27
+ - libffi=3.4.6
28
+ - libfreetype=2.14.1
29
+ - libfreetype6=2.14.1
30
+ - libgcc=15.1.0
31
+ - libgcc-ng=15.1.0
32
+ - libgfortran=15.1.0
33
+ - libgfortran-ng=15.1.0
34
+ - libgfortran5=15.1.0
35
+ - libgomp=15.1.0
36
+ - libjpeg-turbo=3.1.0
37
+ - liblapack=3.9.0
38
+ - liblapacke=3.9.0
39
+ - liblzma=5.8.1
40
+ - liblzma-devel=5.8.1
41
+ - libnsl=2.0.1
42
+ - libopenblas=0.3.30
43
+ - libpng=1.6.50
44
+ - libsqlite=3.50.4
45
+ - libstdcxx=15.1.0
46
+ - libstdcxx-ng=15.1.0
47
+ - libtiff=4.7.1
48
+ - libuuid=2.41.2
49
+ - libwebp-base=1.6.0
50
+ - libxcb=1.17.0
51
+ - libxcrypt=4.4.36
52
+ - libzlib=1.3.1
53
+ - matplotlib-base=3.4.3
54
+ - ncurses=6.5
55
+ - networkx=2.8.8
56
+ - numpy=1.24.4
57
+ - openblas=0.3.30
58
+ - openjpeg=2.5.4
59
+ - openssl=3.5.4
60
+ - packaging=25.0
61
+ - pandas=2.0.3
62
+ - patsy=0.5.6
63
+ - pillow=10.4.0
64
+ - pip=22.1.2
65
+ - plotly=5.24.1
66
+ - pthread-stubs=0.4
67
+ - pyparsing=3.1.4
68
+ - pysocks=1.7.1
69
+ - python=3.8.20
70
+ - python-dateutil=2.8.2
71
+ - python-tzdata=2025.2
72
+ - python_abi=3.8
73
+ - pytz=2024.2
74
+ - readline=8.2
75
+ - requests=2.32.3
76
+ - scikit-learn=1.3.2
77
+ - scipy=1.9.3
78
+ - seaborn=0.13.2
79
+ - seaborn-base=0.13.2
80
+ - setuptools=70.3.0
81
+ - statsmodels=0.13.5
82
+ - tenacity=8.5.0
83
+ - threadpoolctl=3.3.0
84
+ - tk=8.6.13
85
+ - tornado=6.2
86
+ - tqdm=4.67.1
87
+ - urllib3=2.2.1
88
+ - wheel=0.45.1
89
+ - xorg-libxau=1.0.12
90
+ - xorg-libxdmcp=1.1.5
91
+ - xz=5.8.1
92
+ - xz-gpl-tools=5.8.1
93
+ - xz-tools=5.8.1
94
+ - zstd=1.5.7
95
+ - pip:
96
+ - filelock==3.16.1
97
+ - fsspec==2024.3.1
98
+ - jinja2==3.1.6
99
+ - markupsafe==2.1.5
100
+ - mpmath==1.3.0
101
+ - psutil==7.2.2
102
+ - pytest==8.3.5
103
+ - pyyaml==6.0.3
104
+ - six==1.17.0
105
+ - sympy==1.13.3
106
+ - torch==2.4.1+cpu
107
+ - trl==0.11.4
108
+ - tyro==1.0.13
109
+ prefix: /home/lily/yz979/anaconda3/envs/006_map_alignment_test
configs/006_map_alignment_test/explicit.txt ADDED
@@ -0,0 +1,94 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # This file may be used to create an environment using:
2
+ # $ conda create --name <env> --file <this file>
3
+ # platform: linux-64
4
+ @EXPLICIT
5
+ https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
6
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7
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163
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188
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189
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303
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304
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312
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313
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314
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315
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317
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318
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319
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320
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321
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322
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323
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324
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325
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326
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327
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328
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330
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331
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336
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338
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344
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350
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353
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354
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355
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363
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364
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365
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366
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367
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368
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370
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373
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375
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376
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377
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378
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397
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399
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400
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401
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403
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407
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416
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418
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420
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421
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422
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423
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424
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425
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426
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427
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428
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429
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431
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432
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435
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450
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451
+ zstandard==0.23.0
configs/006_map_alignment_test/pip-freeze.txt ADDED
@@ -0,0 +1,463 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ absl-py==2.3.1
2
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3
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4
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5
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6
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7
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11
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13
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14
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15
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16
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17
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18
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19
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20
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21
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22
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23
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24
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25
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26
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27
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28
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29
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31
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32
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33
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34
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35
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36
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37
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38
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39
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40
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41
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42
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43
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44
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45
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46
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48
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49
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50
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51
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52
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53
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54
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55
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56
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57
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58
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59
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60
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61
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63
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64
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65
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66
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67
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68
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69
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70
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71
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72
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73
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74
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75
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76
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78
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79
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80
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81
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82
+ einops==0.7.0
83
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84
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85
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86
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87
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88
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89
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90
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91
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92
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93
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94
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95
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96
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97
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98
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99
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100
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101
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102
+ finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
103
+ flaky==3.7.0
104
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105
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106
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107
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108
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109
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110
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111
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112
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113
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114
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115
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116
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117
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118
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119
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120
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121
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122
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123
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124
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125
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126
+ h11==0.14.0
127
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128
+ hf-xet==1.2.0
129
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130
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131
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132
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133
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134
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135
+ huggingface_hub==0.36.1
136
+ humanfriendly==10.0
137
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138
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139
+ idna @ file:///home/conda/feedstock_root/build_artifacts/idna_1726459485162/work
140
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141
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142
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143
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144
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145
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146
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147
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148
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149
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150
+ isodate==0.7.2
151
+ itsdangerous==2.0.1
152
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153
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154
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155
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156
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157
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158
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159
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160
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161
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162
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163
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164
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165
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166
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167
+ kiwisolver @ file:///croot/kiwisolver_1672387140495/work
168
+ kubernetes==29.0.0
169
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170
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171
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172
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173
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174
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175
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176
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177
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178
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179
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180
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181
+ Levenshtein==0.25.1
182
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183
+ litellm==1.77.4
184
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185
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186
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187
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188
+ lmdb==1.7.3
189
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190
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191
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192
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193
+ markdown-it-py==3.0.0
194
+ markdown2==2.4.13
195
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196
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197
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198
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199
+ mdtex2html==1.3.0
200
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201
+ metaphor-python==0.1.23
202
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203
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204
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205
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206
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207
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208
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209
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210
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211
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212
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213
+ multiprocess==0.70.16
214
+ murmurhash==1.0.10
215
+ mypy-extensions==1.0.0
216
+ narwhals==1.42.1
217
+ natsort==8.4.0
218
+ nest-asyncio==1.6.0
219
+ netCDF4==1.7.2
220
+ networkx @ file:///home/conda/feedstock_root/build_artifacts/networkx_1667391556261/work
221
+ neuroHarmonize==2.4.5
222
+ nh3==0.2.17
223
+ ninja==1.11.1.1
224
+ nltk==3.8.1
225
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226
+ numexpr==2.8.6
227
+ numpoly==1.0.6
228
+ numpy @ file:///home/conda/feedstock_root/build_artifacts/numpy_1687808301083/work
229
+ numpydoc==1.1.0
230
+ nvidia-ml-py==12.535.133
231
+ nvitop==1.3.2
232
+ oauthlib==3.2.2
233
+ onnx==1.16.0
234
+ onnxruntime==1.15.1
235
+ openai==1.101.0
236
+ openpyxl==3.0.9
237
+ opentelemetry-api==1.24.0
238
+ opentelemetry-exporter-otlp-proto-common==1.24.0
239
+ opentelemetry-exporter-otlp-proto-grpc==1.24.0
240
+ opentelemetry-proto==1.24.0
241
+ opentelemetry-sdk==1.24.0
242
+ opentelemetry-semantic-conventions==0.45b0
243
+ opt-einsum==3.3.0
244
+ optax==0.1.5
245
+ ordered-set==4.1.0
246
+ orjson==3.10.1
247
+ overrides==7.7.0
248
+ packaging==26.2
249
+ pandas==2.0.3
250
+ pandas-stubs==1.2.0.45
251
+ parsimonious==0.8.1
252
+ pathlib==1.0.1
253
+ patsy==1.0.1
254
+ pdf2image==1.17.0
255
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256
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257
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258
+ pillow @ file:///home/conda/feedstock_root/build_artifacts/pillow_1719903565503/work
259
+ pip-search==0.0.12
260
+ pkgutil_resolve_name==1.3.10
261
+ plac==0.9.6
262
+ plotly==6.3.0
263
+ pluggy==1.5.0
264
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265
+ pondpond==1.4.1
266
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267
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268
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269
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270
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271
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272
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273
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274
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275
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276
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277
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278
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279
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280
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281
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282
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283
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284
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285
+ pyDOE2==1.3.0
286
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287
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288
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289
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290
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291
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292
+ PyMuPDFb==1.23.9
293
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294
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295
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296
+ pyOpenSSL==24.1.0
297
+ pypandoc==1.13
298
+ pyparsing @ file:///home/conda/feedstock_root/build_artifacts/pyparsing_1724616129934/work
299
+ pypdf==4.2.0
300
+ pypdfium2==4.29.0
301
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302
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303
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304
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305
+ pyro-api==0.1.2
306
+ pyro-ppl==1.9.1
307
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308
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309
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310
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311
+ pytesseract==0.3.10
312
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313
+ pytest-cov==5.0.0
314
+ python-dateutil==2.9.0.post0
315
+ python-decouple==3.8
316
+ python-docx==1.1.0
317
+ python-dotenv==1.0.1
318
+ python-iso639==2024.4.27
319
+ python-Levenshtein==0.25.1
320
+ python-multipart==0.0.18
321
+ python-pptx==0.6.23
322
+ python-slugify==8.0.4
323
+ pytorch-pretrained-bert==0.6.2
324
+ pytz==2025.2
325
+ pyvista==0.44.2
326
+ PyWavelets==1.4.1
327
+ PyYAML==6.0.3
328
+ quantile-python==1.1
329
+ rapidfuzz==3.8.1
330
+ rapidocr-onnxruntime==1.3.8
331
+ ray==2.10.0
332
+ rdkit==2024.3.5
333
+ redis==6.1.1
334
+ referencing==0.35.1
335
+ regex==2022.4.24
336
+ requests==2.32.4
337
+ requests-oauthlib==1.3.0
338
+ responses==0.16.0
339
+ rich==13.7.1
340
+ rouge-score==0.1.2
341
+ rpds-py==0.20.1
342
+ rq==2.3.3
343
+ rsa==4.7.2
344
+ ruff==0.4.2
345
+ rustworkx==0.15.1
346
+ s3transfer==0.11.3
347
+ sacrebleu==2.1.0
348
+ sacremoses==0.0.46
349
+ safetensors==0.4.3
350
+ scikit-learn @ file:///home/conda/feedstock_root/build_artifacts/scikit-learn_1701931997682/work
351
+ scipy==1.9.3
352
+ scooby==0.10.1
353
+ seaborn==0.13.2
354
+ semantic-version==2.10.0
355
+ sentence-transformers==2.2.2
356
+ sentencepiece==0.1.91
357
+ sentry-sdk==2.39.0
358
+ session_info==1.0.1
359
+ sgmllib3k==1.0.0
360
+ shapely==2.0.4
361
+ shellingham==1.5.4
362
+ shortuuid==1.0.13
363
+ six==1.17.0
364
+ smart-open==6.4.0
365
+ smmap==5.0.1
366
+ sniffio==1.3.1
367
+ snowballstemmer==2.2.0
368
+ sobol-seq==0.2.0
369
+ socksio==1.0.0
370
+ soupsieve==2.5
371
+ spacy-legacy==3.0.12
372
+ spacy-loggers==1.0.5
373
+ Sphinx==4.3.1
374
+ sphinxcontrib-applehelp==1.0.2
375
+ sphinxcontrib-devhelp==1.0.2
376
+ sphinxcontrib-htmlhelp==2.0.0
377
+ sphinxcontrib-jsmath==1.0.1
378
+ sphinxcontrib-qthelp==1.0.3
379
+ sphinxcontrib-serializinghtml==1.1.5
380
+ SQLAlchemy==2.0.19
381
+ sqlparse==0.4.2
382
+ sse-starlette==1.8.2
383
+ starlette==0.44.0
384
+ statsmodels==0.14.1
385
+ stdlib-list==0.10.0
386
+ streamlit==1.30.0
387
+ streamlit-aggrid==0.3.4.post3
388
+ streamlit-antd-components==0.3.1
389
+ streamlit-chatbox==1.1.11
390
+ streamlit-feedback==0.1.3
391
+ streamlit-modal==0.1.0
392
+ streamlit-option-menu==0.3.12
393
+ strsimpy==0.2.1
394
+ svgwrite==1.4.3
395
+ sympy==1.13.3
396
+ tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
397
+ tabulate==0.8.9
398
+ tenacity==8.2.3
399
+ tensorboard-plugin-wit==1.8.0
400
+ tensorboardX==2.4.1
401
+ text-unidecode==1.3
402
+ texttable==1.7.0
403
+ thefuzz==0.22.1
404
+ threadpoolctl==3.5.0
405
+ tifffile==2023.7.10
406
+ tiktoken==0.7.0
407
+ timm==0.9.16
408
+ tk==0.1.0
409
+ tokenizers==0.20.3
410
+ toml==0.10.2
411
+ tomlkit==0.12.0
412
+ toolz==0.12.1
413
+ torch==2.4.1+cpu
414
+ torch-geometric==2.6.1
415
+ torchaudio==2.1.2+cu118
416
+ torchtext==0.4.0
417
+ tornado==6.4
418
+ tqdm==4.67.1
419
+ transformer-lens==2.16.1
420
+ transformers==4.46.3
421
+ transformers-stream-generator==0.0.5
422
+ trl==0.11.4
423
+ typed-argument-parser==1.10.1
424
+ typeguard==4.4.0
425
+ typer==0.9.4
426
+ types-requests==2.31.0.20240406
427
+ typing-inspect==0.9.0
428
+ typing-utils==0.1.0
429
+ typing_extensions==4.13.2
430
+ tyro==1.0.13
431
+ tzdata==2024.1
432
+ tzlocal==5.2
433
+ umap-learn==0.5.7
434
+ Unidecode==1.3.2
435
+ unittest-xml-reporting==3.2.0
436
+ unstructured==0.11.0
437
+ unstructured-client==0.22.0
438
+ unstructured-inference==0.7.15
439
+ unstructured.pytesseract==0.3.12
440
+ urllib3 @ file:///home/conda/feedstock_root/build_artifacts/urllib3_1708239446578/work
441
+ uvicorn==0.29.0
442
+ uvloop==0.21.0
443
+ validators==0.28.1
444
+ vllm==0.2.7
445
+ vtk==9.3.1
446
+ wandb==0.22.0
447
+ watchdog==3.0.0
448
+ watchfiles==0.21.0
449
+ wavedrom==2.0.3.post3
450
+ weasel==0.3.4
451
+ websocket-client==1.8.0
452
+ websockets==13.1
453
+ Werkzeug==2.0.2
454
+ word2number==1.1
455
+ xlrd==2.0.1
456
+ XlsxWriter==3.0.2
457
+ xxhash==2.0.2
458
+ Yapsy==1.12.2
459
+ yarl==1.15.2
460
+ youtube-search==2.1.2
461
+ zipp==3.20.2
462
+ zope.event==4.5.0
463
+ zstandard==0.23.0
configs/007_spa_test/editable.txt ADDED
File without changes
configs/007_spa_test/env.yml ADDED
@@ -0,0 +1,98 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ name: 007_spa_test
2
+ channels:
3
+ - conda-forge
4
+ - defaults
5
+ dependencies:
6
+ - _libgcc_mutex=0.1
7
+ - _openmp_mutex=4.5
8
+ - blas=2.136
9
+ - blas-devel=3.9.0
10
+ - brotli-python=1.1.0
11
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+ - charset-normalizer=3.3.2
15
+ - colorama=0.4.6
16
+ - cycler=0.12.1
17
+ - freetype=2.14.1
18
+ - idna=3.10
19
+ - joblib=1.4.2
20
+ - kiwisolver=1.4.4
21
+ - lcms2=2.17
22
+ - ld_impl_linux-64=2.44
23
+ - lerc=4.0.0
24
+ - libblas=3.9.0
25
+ - libcblas=3.9.0
26
+ - libdeflate=1.24
27
+ - libffi=3.4.6
28
+ - libfreetype=2.14.1
29
+ - libfreetype6=2.14.1
30
+ - libgcc=15.1.0
31
+ - libgcc-ng=15.1.0
32
+ - libgfortran=15.1.0
33
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34
+ - libgfortran5=15.1.0
35
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36
+ - libjpeg-turbo=3.1.0
37
+ - liblapack=3.9.0
38
+ - liblapacke=3.9.0
39
+ - liblzma=5.8.1
40
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41
+ - libnsl=2.0.1
42
+ - libopenblas=0.3.30
43
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44
+ - libsqlite=3.50.4
45
+ - libstdcxx=15.1.0
46
+ - libstdcxx-ng=15.1.0
47
+ - libtiff=4.7.1
48
+ - libuuid=2.41.2
49
+ - libwebp-base=1.6.0
50
+ - libxcb=1.17.0
51
+ - libxcrypt=4.4.36
52
+ - libzlib=1.3.1
53
+ - matplotlib-base=3.4.3
54
+ - ncurses=6.5
55
+ - networkx=2.8.8
56
+ - numpy=1.24.4
57
+ - openblas=0.3.30
58
+ - openjpeg=2.5.4
59
+ - openssl=3.5.4
60
+ - packaging=25.0
61
+ - pandas=2.0.3
62
+ - patsy=0.5.6
63
+ - pillow=10.4.0
64
+ - pip=22.1.2
65
+ - plotly=5.24.1
66
+ - pthread-stubs=0.4
67
+ - pyparsing=3.1.4
68
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69
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70
+ - python-dateutil=2.8.2
71
+ - python-tzdata=2025.2
72
+ - python_abi=3.8
73
+ - pytz=2024.2
74
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75
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76
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77
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78
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79
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83
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84
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86
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88
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+ - zstd=1.5.7
95
+ - pip:
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+ - six==1.17.0
97
+ - torch==2.4.1+cpu
98
+ prefix: /home/lily/yz979/anaconda3/envs/007_spa_test
configs/007_spa_test/explicit.txt ADDED
@@ -0,0 +1,94 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # This file may be used to create an environment using:
2
+ # $ conda create --name <env> --file <this file>
3
+ # platform: linux-64
4
+ @EXPLICIT
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+ https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
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configs/007_spa_test/meta.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
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+ {
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+ "exported_at": "2026-05-17T04:03:12Z"
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+ }
configs/007_spa_test/pip-clean.txt ADDED
@@ -0,0 +1,444 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ absl-py==2.3.1
2
+ accelerate==0.24.1
3
+ aiofiles==23.2.1
4
+ aiohappyeyeballs==2.4.4
5
+ aiohttp==3.10.11
6
+ aioprometheus==23.12.0
7
+ aiosignal==1.3.1
8
+ alabaster==0.7.12
9
+ allennlp==0.8.4
10
+ altair==5.3.0
11
+ annotated-types==0.6.0
12
+ anyio==3.7.1
13
+ APScheduler==3.11.2
14
+ arxiv==2.1.0
15
+ astunparse==1.6.3
16
+ async-timeout==4.0.3
17
+ attrs==25.3.0
18
+ autograd==1.7.0
19
+ autoray==0.6.12
20
+ awscli==1.32.93
21
+ azure-core==1.33.0
22
+ azure-identity==1.21.0
23
+ azure-storage-blob==12.26.0
24
+ Babel==2.9.1
25
+ backoff==2.2.1
26
+ backports.zoneinfo==0.2.1
27
+ bcrypt==4.1.2
28
+ beartype==0.14.1
29
+ better-abc==0.0.3
30
+ biopython==1.83
31
+ bitarray==2.5.1
32
+ bitsandbytes==0.43.1
33
+ blessed==1.20.0
34
+ blis==0.7.11
35
+ boto3==1.36.0
36
+ botocore==1.36.26
37
+ botorch==0.8.5
38
+ bpl==0.1.1
39
+ Brotli==1.1.0
40
+ bs4==0.0.2
41
+ cachetools==4.2.4
42
+ cffi==1.15.0
43
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44
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45
+ charset-normalizer==3.4.7
46
+ chex==0.1.7
47
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48
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49
+ click==8.1.7
50
+ cloudpathlib==0.16.0
51
+ cobra==0.29.1
52
+ cohere==5.3.3
53
+ coloredlogs==15.0.1
54
+ confection==0.1.4
55
+ ConfigArgParse==1.5.3
56
+ conllu==0.11
57
+ coverage==7.6.1
58
+ cpm-kernels==1.0.11
59
+ cryptography==42.0.5
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61
+ cymem==2.0.8
62
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63
+ dataclasses==0.6
64
+ dataclasses-json==0.6.4
65
+ datasets==2.19.0
66
+ deepdiff==7.0.1
67
+ Deprecated==1.2.14
68
+ deprecation==2.1.0
69
+ dill==0.3.8
70
+ distro==1.9.0
71
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72
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73
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74
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75
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76
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77
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78
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79
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80
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81
+ emoji==2.11.1
82
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83
+ et-xmlfile==1.1.0
84
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+ exceptiongroup==1.2.1
86
+ fairseq==0.10.2
87
+ faiss-cpu==1.7.4
88
+ faiss-gpu==1.7.2
89
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90
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91
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92
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93
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94
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95
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96
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97
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98
+ finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
99
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100
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101
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102
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103
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104
+ ftfy==6.0.3
105
+ future==0.18.2
106
+ fuzzywuzzy==0.18.0
107
+ gdown==5.2.0
108
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109
+ geotorch==0.3.0
110
+ get-annotations==0.1.2
111
+ gevent==21.12.0
112
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113
+ GitPython==3.1.43
114
+ google-pasta==0.2.0
115
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116
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117
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118
+ gradio_client==0.16.0
119
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120
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121
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122
+ h11==0.14.0
123
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124
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125
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126
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127
+ httpcore==1.0.5
128
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129
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130
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131
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132
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133
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134
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135
+ igraph==0.11.8
136
+ imageio==2.35.1
137
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138
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139
+ importlib-metadata==7.0.0
140
+ importlib_resources==6.4.5
141
+ inequalipy==1.0.5
142
+ iniconfig==1.1.1
143
+ inquirerpy==0.3.4
144
+ iopath==0.1.10
145
+ isodate==0.7.2
146
+ itsdangerous==2.0.1
147
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148
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149
+ jaxtyping==0.2.19
150
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151
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152
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153
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154
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155
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156
+ jsonpath-python==1.0.6
157
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158
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159
+ jsonschema-specifications==2023.12.1
160
+ kaggle==1.7.4.5
161
+ Keras-Preprocessing==1.1.2
162
+ kubernetes==29.0.0
163
+ langchain==0.1.16
164
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165
+ langchain-core==0.1.46
166
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167
+ langchain-text-splitters==0.0.1
168
+ langcodes==3.4.0
169
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170
+ langsmith==0.1.51
171
+ language_data==1.2.0
172
+ layoutparser==0.3.4
173
+ lazy_loader==0.4
174
+ leidenalg==0.10.2
175
+ Levenshtein==0.25.1
176
+ linear-operator==0.4.0
177
+ litellm==1.77.4
178
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179
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180
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181
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182
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183
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184
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185
+ marisa-trie==1.1.0
186
+ Markdown==3.3.6
187
+ markdown-it-py==3.0.0
188
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189
+ markdownify==0.11.6
190
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191
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192
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193
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194
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195
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196
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197
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198
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199
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200
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201
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202
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203
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204
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205
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206
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207
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208
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209
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210
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211
+ netCDF4==1.7.2
212
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213
+ nh3==0.2.17
214
+ ninja==1.11.1.1
215
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216
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217
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218
+ numpoly==1.0.6
219
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220
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221
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222
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223
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224
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225
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226
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227
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228
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229
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230
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231
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232
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233
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234
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235
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236
+ orjson==3.10.1
237
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238
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239
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240
+ pandas-stubs==1.2.0.45
241
+ parsimonious==0.8.1
242
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243
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244
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245
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246
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247
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248
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249
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250
+ plac==0.9.6
251
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252
+ pluggy==1.5.0
253
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254
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255
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256
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257
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258
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259
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260
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261
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262
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263
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264
+ pulsar-client==3.5.0
265
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266
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267
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268
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269
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270
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271
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272
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273
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274
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275
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276
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277
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278
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279
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280
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282
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283
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284
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285
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286
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287
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288
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289
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290
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291
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292
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293
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294
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295
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296
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297
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298
+ pytesseract==0.3.10
299
+ pytest-cov==5.0.0
300
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301
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302
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303
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304
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305
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306
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307
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308
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309
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310
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311
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312
+ PyWavelets==1.4.1
313
+ PyYAML==6.0.3
314
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315
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316
+ rapidocr-onnxruntime==1.3.8
317
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318
+ rdkit==2024.3.5
319
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320
+ referencing==0.35.1
321
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322
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323
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324
+ responses==0.16.0
325
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326
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327
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328
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329
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330
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331
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332
+ s3transfer==0.11.3
333
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334
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335
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336
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337
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338
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339
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340
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341
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342
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343
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345
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346
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347
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348
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349
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350
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351
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352
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353
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354
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361
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362
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363
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364
+ sphinxcontrib-serializinghtml==1.1.5
365
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366
+ sqlparse==0.4.2
367
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368
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369
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370
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372
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+ tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
381
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382
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383
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384
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385
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386
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387
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388
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389
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391
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392
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393
+ tokenizers==0.20.3
394
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395
+ tomlkit==0.12.0
396
+ toolz==0.12.1
397
+ torch==2.4.1+cpu
398
+ torch-geometric==2.6.1
399
+ torchaudio==2.1.2+cu118
400
+ torchtext==0.4.0
401
+ tornado==6.4
402
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403
+ transformer-lens==2.16.1
404
+ transformers==4.46.3
405
+ transformers-stream-generator==0.0.5
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+ typeguard==4.4.0
408
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409
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410
+ typing-inspect==0.9.0
411
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412
+ typing_extensions==4.13.2
413
+ tzdata==2024.1
414
+ tzlocal==5.2
415
+ umap-learn==0.5.7
416
+ Unidecode==1.3.2
417
+ unittest-xml-reporting==3.2.0
418
+ unstructured==0.11.0
419
+ unstructured-client==0.22.0
420
+ unstructured-inference==0.7.15
421
+ unstructured.pytesseract==0.3.12
422
+ uvicorn==0.29.0
423
+ uvloop==0.21.0
424
+ validators==0.28.1
425
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426
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427
+ wandb==0.22.0
428
+ watchdog==3.0.0
429
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430
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431
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432
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433
+ websockets==13.1
434
+ Werkzeug==2.0.2
435
+ word2number==1.1
436
+ xlrd==2.0.1
437
+ XlsxWriter==3.0.2
438
+ xxhash==2.0.2
439
+ Yapsy==1.12.2
440
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441
+ youtube-search==2.1.2
442
+ zipp==3.20.2
443
+ zope.event==4.5.0
444
+ zstandard==0.23.0
configs/007_spa_test/pip-freeze.txt ADDED
@@ -0,0 +1,456 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ absl-py==2.3.1
2
+ accelerate==0.24.1
3
+ aiofiles==23.2.1
4
+ aiohappyeyeballs==2.4.4
5
+ aiohttp==3.10.11
6
+ aioprometheus==23.12.0
7
+ aiosignal==1.3.1
8
+ alabaster==0.7.12
9
+ allennlp==0.8.4
10
+ altair==5.3.0
11
+ annotated-types==0.6.0
12
+ anyio==3.7.1
13
+ APScheduler==3.11.2
14
+ arxiv==2.1.0
15
+ astunparse==1.6.3
16
+ async-timeout==4.0.3
17
+ attrs==25.3.0
18
+ autograd==1.7.0
19
+ autoray==0.6.12
20
+ awscli==1.32.93
21
+ azure-core==1.33.0
22
+ azure-identity==1.21.0
23
+ azure-storage-blob==12.26.0
24
+ Babel==2.9.1
25
+ backoff==2.2.1
26
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27
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28
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29
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30
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31
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32
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33
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34
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35
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36
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37
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38
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39
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40
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41
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42
+ certifi @ file:///home/conda/feedstock_root/build_artifacts/certifi_1707022139797/work/certifi
43
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44
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45
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46
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47
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48
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49
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50
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51
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52
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53
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54
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55
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56
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57
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58
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59
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60
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61
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62
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63
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64
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65
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66
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67
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68
+ datasets==2.19.0
69
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70
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71
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72
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73
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74
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75
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76
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77
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78
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79
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80
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81
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82
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83
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84
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85
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86
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87
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88
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89
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90
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91
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92
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93
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94
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95
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96
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97
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98
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99
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100
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101
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102
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103
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104
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105
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106
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107
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108
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109
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110
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111
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112
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113
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114
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115
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116
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117
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118
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119
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120
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121
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122
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123
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124
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125
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126
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127
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128
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129
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130
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131
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132
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133
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134
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135
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136
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137
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138
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139
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140
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141
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142
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143
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144
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145
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146
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147
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148
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149
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150
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151
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152
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153
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154
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155
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156
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157
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158
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159
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160
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161
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162
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163
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164
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165
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166
+ kiwisolver @ file:///croot/kiwisolver_1672387140495/work
167
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168
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169
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170
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171
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172
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173
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174
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175
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176
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177
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178
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179
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180
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181
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182
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183
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184
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185
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186
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187
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188
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189
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190
+ marisa-trie==1.1.0
191
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192
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193
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194
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195
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196
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197
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198
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199
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200
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201
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202
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203
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204
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205
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206
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207
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208
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209
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210
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211
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212
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213
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214
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215
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216
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217
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218
+ networkx @ file:///home/conda/feedstock_root/build_artifacts/networkx_1667391556261/work
219
+ neuroHarmonize==2.4.5
220
+ nh3==0.2.17
221
+ ninja==1.11.1.1
222
+ nltk==3.8.1
223
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224
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225
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226
+ numpy @ file:///home/conda/feedstock_root/build_artifacts/numpy_1687808301083/work
227
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228
+ nvidia-ml-py==12.535.133
229
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230
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231
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232
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233
+ openai==1.101.0
234
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235
+ opentelemetry-api==1.24.0
236
+ opentelemetry-exporter-otlp-proto-common==1.24.0
237
+ opentelemetry-exporter-otlp-proto-grpc==1.24.0
238
+ opentelemetry-proto==1.24.0
239
+ opentelemetry-sdk==1.24.0
240
+ opentelemetry-semantic-conventions==0.45b0
241
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242
+ optax==0.1.5
243
+ ordered-set==4.1.0
244
+ orjson==3.10.1
245
+ overrides==7.7.0
246
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247
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248
+ pandas-stubs==1.2.0.45
249
+ parsimonious==0.8.1
250
+ pathlib==1.0.1
251
+ patsy==1.0.1
252
+ pdf2image==1.17.0
253
+ pfzy==0.3.4
254
+ PICOS==2.6.1
255
+ pikepdf==8.4.1
256
+ pillow @ file:///home/conda/feedstock_root/build_artifacts/pillow_1719903565503/work
257
+ pip-search==0.0.12
258
+ pkgutil_resolve_name==1.3.10
259
+ plac==0.9.6
260
+ plotly==6.3.0
261
+ pluggy==1.5.0
262
+ ply==3.11
263
+ pondpond==1.4.1
264
+ pooch==1.8.2
265
+ portalocker==2.4.0
266
+ posthog==3.5.0
267
+ preshed==3.0.9
268
+ prettytable==3.11.0
269
+ primer3-py==2.2.0
270
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271
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272
+ PuLP==3.1.1
273
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274
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275
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276
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277
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278
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279
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280
+ pydantic_core==2.27.2
281
+ pydeck==0.9.0b1
282
+ pyDOE2==1.3.0
283
+ pydub==0.25.1
284
+ pyfaidx==0.9.0.1
285
+ Pygments==2.19.2
286
+ PyJWT==2.8.0
287
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288
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289
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290
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291
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292
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293
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294
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295
+ pyparsing @ file:///home/conda/feedstock_root/build_artifacts/pyparsing_1724616129934/work
296
+ pypdf==4.2.0
297
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298
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299
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300
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301
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302
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303
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304
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305
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306
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307
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308
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309
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310
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311
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312
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313
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314
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315
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316
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317
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318
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319
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320
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321
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322
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323
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324
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325
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326
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327
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328
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329
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330
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331
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332
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333
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334
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335
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336
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337
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338
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339
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340
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341
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342
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343
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344
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345
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346
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347
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348
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349
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350
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351
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352
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353
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354
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355
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356
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357
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358
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359
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360
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361
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362
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363
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364
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365
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366
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367
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368
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369
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370
+ sphinxcontrib-applehelp==1.0.2
371
+ sphinxcontrib-devhelp==1.0.2
372
+ sphinxcontrib-htmlhelp==2.0.0
373
+ sphinxcontrib-jsmath==1.0.1
374
+ sphinxcontrib-qthelp==1.0.3
375
+ sphinxcontrib-serializinghtml==1.1.5
376
+ SQLAlchemy==2.0.19
377
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378
+ sse-starlette==1.8.2
379
+ starlette==0.44.0
380
+ statsmodels==0.14.1
381
+ stdlib-list==0.10.0
382
+ streamlit==1.30.0
383
+ streamlit-aggrid==0.3.4.post3
384
+ streamlit-antd-components==0.3.1
385
+ streamlit-chatbox==1.1.11
386
+ streamlit-feedback==0.1.3
387
+ streamlit-modal==0.1.0
388
+ streamlit-option-menu==0.3.12
389
+ strsimpy==0.2.1
390
+ svgwrite==1.4.3
391
+ tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
392
+ tabulate==0.8.9
393
+ tenacity==8.2.3
394
+ tensorboard-plugin-wit==1.8.0
395
+ tensorboardX==2.4.1
396
+ text-unidecode==1.3
397
+ texttable==1.7.0
398
+ thefuzz==0.22.1
399
+ threadpoolctl==3.5.0
400
+ tifffile==2023.7.10
401
+ tiktoken==0.7.0
402
+ timm==0.9.16
403
+ tk==0.1.0
404
+ tokenizers==0.20.3
405
+ toml==0.10.2
406
+ tomlkit==0.12.0
407
+ toolz==0.12.1
408
+ torch==2.4.1+cpu
409
+ torch-geometric==2.6.1
410
+ torchaudio==2.1.2+cu118
411
+ torchtext==0.4.0
412
+ tornado==6.4
413
+ tqdm==4.67.1
414
+ transformer-lens==2.16.1
415
+ transformers==4.46.3
416
+ transformers-stream-generator==0.0.5
417
+ typed-argument-parser==1.10.1
418
+ typeguard==4.4.0
419
+ typer==0.9.4
420
+ types-requests==2.31.0.20240406
421
+ typing-inspect==0.9.0
422
+ typing-utils==0.1.0
423
+ typing_extensions==4.13.2
424
+ tzdata==2024.1
425
+ tzlocal==5.2
426
+ umap-learn==0.5.7
427
+ Unidecode==1.3.2
428
+ unittest-xml-reporting==3.2.0
429
+ unstructured==0.11.0
430
+ unstructured-client==0.22.0
431
+ unstructured-inference==0.7.15
432
+ unstructured.pytesseract==0.3.12
433
+ urllib3 @ file:///home/conda/feedstock_root/build_artifacts/urllib3_1708239446578/work
434
+ uvicorn==0.29.0
435
+ uvloop==0.21.0
436
+ validators==0.28.1
437
+ vllm==0.2.7
438
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439
+ wandb==0.22.0
440
+ watchdog==3.0.0
441
+ watchfiles==0.21.0
442
+ wavedrom==2.0.3.post3
443
+ weasel==0.3.4
444
+ websocket-client==1.8.0
445
+ websockets==13.1
446
+ Werkzeug==2.0.2
447
+ word2number==1.1
448
+ xlrd==2.0.1
449
+ XlsxWriter==3.0.2
450
+ xxhash==2.0.2
451
+ Yapsy==1.12.2
452
+ yarl==1.15.2
453
+ youtube-search==2.1.2
454
+ zipp==3.20.2
455
+ zope.event==4.5.0
456
+ zstandard==0.23.0
configs/011_gp_hdbo_test/editable.txt ADDED
File without changes
configs/011_gp_hdbo_test/env.yml ADDED
@@ -0,0 +1,42 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ name: 011_gp_hdbo_test
2
+ channels:
3
+ - conda-forge
4
+ - defaults
5
+ dependencies:
6
+ - _libgcc_mutex=0.1
7
+ - _openmp_mutex=4.5
8
+ - bzip2=1.0.8
9
+ - ca-certificates=2025.8.3
10
+ - ld_impl_linux-64=2.44
11
+ - libffi=3.4.6
12
+ - libgcc=15.1.0
13
+ - libgcc-ng=15.1.0
14
+ - libgomp=15.1.0
15
+ - liblzma=5.8.1
16
+ - liblzma-devel=5.8.1
17
+ - libnsl=2.0.1
18
+ - libsqlite=3.50.4
19
+ - libuuid=2.41.2
20
+ - libxcrypt=4.4.36
21
+ - libzlib=1.3.1
22
+ - ncurses=6.5
23
+ - openssl=3.5.3
24
+ - pip=22.1.2
25
+ - python=3.8.20
26
+ - readline=8.2
27
+ - setuptools=70.3.0
28
+ - tk=8.6.13
29
+ - wheel=0.45.1
30
+ - xz=5.8.1
31
+ - xz-gpl-tools=5.8.1
32
+ - xz-tools=5.8.1
33
+ - pip:
34
+ - mpmath==1.3.0
35
+ - numpy==1.24.4
36
+ - packaging==25.0
37
+ - scikit-learn==1.3.2
38
+ - scipy==1.10.1
39
+ - six==1.17.0
40
+ - sympy==1.13.3
41
+ - torch==2.1.2+cpu
42
+ prefix: /home/lily/yz979/anaconda3/envs/011_gp_hdbo_test
configs/011_gp_hdbo_test/explicit.txt ADDED
@@ -0,0 +1,31 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # This file may be used to create an environment using:
2
+ # $ conda create --name <env> --file <this file>
3
+ # platform: linux-64
4
+ @EXPLICIT
5
+ https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
6
+ https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.8.3-hbd8a1cb_0.conda#74784ee3d225fc3dca89edb635b4e5cc
7
+ https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.44-ha97dd6f_2.conda#14bae321b8127b63cba276bd53fac237
8
+ https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.1.0-h767d61c_5.conda#dcd5ff1940cd38f6df777cac86819d60
9
+ https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
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+ tifffile==2023.7.10
394
+ tiktoken==0.7.0
395
+ timm==0.9.16
396
+ tk==0.1.0
397
+ tokenizers==0.20.3
398
+ toml==0.10.2
399
+ tomlkit==0.12.0
400
+ toolz==0.12.1
401
+ torch==2.1.2+cpu
402
+ torch-geometric==2.6.1
403
+ torchaudio==2.1.2+cu118
404
+ torchtext==0.4.0
405
+ tornado==6.4
406
+ tqdm==4.67.1
407
+ transformer-lens==2.16.1
408
+ transformers==4.46.3
409
+ transformers-stream-generator==0.0.5
410
+ typed-argument-parser==1.10.1
411
+ typeguard==4.4.0
412
+ typer==0.9.4
413
+ types-requests==2.31.0.20240406
414
+ typing-inspect==0.9.0
415
+ typing-utils==0.1.0
416
+ typing_extensions==4.13.2
417
+ tzdata==2024.1
418
+ tzlocal==5.2
419
+ umap-learn==0.5.7
420
+ Unidecode==1.3.2
421
+ unittest-xml-reporting==3.2.0
422
+ unstructured==0.11.0
423
+ unstructured-client==0.22.0
424
+ unstructured-inference==0.7.15
425
+ unstructured.pytesseract==0.3.12
426
+ uvicorn==0.29.0
427
+ uvloop==0.21.0
428
+ validators==0.28.1
429
+ vllm==0.2.7
430
+ vtk==9.3.1
431
+ wandb==0.22.0
432
+ watchdog==3.0.0
433
+ watchfiles==0.21.0
434
+ wavedrom==2.0.3.post3
435
+ weasel==0.3.4
436
+ websocket-client==1.8.0
437
+ websockets==13.1
438
+ Werkzeug==2.0.2
439
+ word2number==1.1
440
+ xlrd==2.0.1
441
+ XlsxWriter==3.0.2
442
+ xxhash==2.0.2
443
+ Yapsy==1.12.2
444
+ yarl==1.15.2
445
+ youtube-search==2.1.2
446
+ zipp==3.20.2
447
+ zope.event==4.5.0
448
+ zstandard==0.23.0
configs/011_gp_hdbo_test/pip-freeze.txt ADDED
@@ -0,0 +1,448 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ absl-py==2.3.1
2
+ accelerate==0.24.1
3
+ aiofiles==23.2.1
4
+ aiohappyeyeballs==2.4.4
5
+ aiohttp==3.10.11
6
+ aioprometheus==23.12.0
7
+ aiosignal==1.3.1
8
+ alabaster==0.7.12
9
+ allennlp==0.8.4
10
+ altair==5.3.0
11
+ annotated-types==0.6.0
12
+ anyio==3.7.1
13
+ APScheduler==3.11.2
14
+ arxiv==2.1.0
15
+ astunparse==1.6.3
16
+ async-timeout==4.0.3
17
+ attrs==25.3.0
18
+ autograd==1.7.0
19
+ autoray==0.6.12
20
+ awscli==1.32.93
21
+ azure-core==1.33.0
22
+ azure-identity==1.21.0
23
+ azure-storage-blob==12.26.0
24
+ Babel==2.9.1
25
+ backoff==2.2.1
26
+ backports.zoneinfo==0.2.1
27
+ bcrypt==4.1.2
28
+ beartype==0.14.1
29
+ better-abc==0.0.3
30
+ biopython==1.83
31
+ bitarray==2.5.1
32
+ bitsandbytes==0.43.1
33
+ blessed==1.20.0
34
+ blis==0.7.11
35
+ boto3==1.36.0
36
+ botocore==1.36.26
37
+ botorch==0.8.5
38
+ bpl==0.1.1
39
+ Brotli==1.1.0
40
+ bs4==0.0.2
41
+ cachetools==4.2.4
42
+ cffi==1.15.0
43
+ cftime==1.6.4.post1
44
+ chaospy==3.3.9
45
+ charset-normalizer==3.4.7
46
+ chex==0.1.7
47
+ chroma-hnswlib==0.7.3
48
+ chromadb==0.4.15
49
+ click==8.1.7
50
+ cloudpathlib==0.16.0
51
+ cobra==0.29.1
52
+ cohere==5.3.3
53
+ coloredlogs==15.0.1
54
+ confection==0.1.4
55
+ ConfigArgParse==1.5.3
56
+ conllu==0.11
57
+ coverage==7.6.1
58
+ cpm-kernels==1.0.11
59
+ cryptography==42.0.5
60
+ cvxopt==1.3.2
61
+ cymem==2.0.8
62
+ Cython==0.29.30
63
+ dataclasses==0.6
64
+ dataclasses-json==0.6.4
65
+ datasets==2.19.0
66
+ deepdiff==7.0.1
67
+ Deprecated==1.2.14
68
+ deprecation==2.1.0
69
+ dill==0.3.8
70
+ distro==1.9.0
71
+ dm-tree==0.1.8
72
+ dnspython==2.6.1
73
+ docstring_parser==0.17.0
74
+ docutils==0.15.2
75
+ dotenv==0.9.9
76
+ duckduckgo-search==3.9.9
77
+ editdistance==0.6.0
78
+ effdet==0.4.1
79
+ einops==0.7.0
80
+ email-validator==2.3.0
81
+ emoji==2.11.1
82
+ equinox==0.10.4
83
+ et-xmlfile==1.1.0
84
+ eval_type_backport==0.2.2
85
+ exceptiongroup==1.2.1
86
+ fairseq==0.10.2
87
+ faiss-cpu==1.7.4
88
+ faiss-gpu==1.7.2
89
+ fancy-einsum==0.0.3
90
+ fastapi==0.115.14
91
+ fastapi-sso==0.16.0
92
+ fastavro==1.9.4
93
+ fastuuid==0.13.5
94
+ fbpca==1.0
95
+ feedparser==6.0.10
96
+ ffmpy==0.3.2
97
+ filetype==1.2.0
98
+ finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
99
+ flaky==3.7.0
100
+ Flask-Cors==3.0.10
101
+ frozenlist==1.4.1
102
+ fschat==0.2.35
103
+ fsspec==2025.3.0
104
+ ftfy==6.0.3
105
+ future==0.18.2
106
+ fuzzywuzzy==0.18.0
107
+ gdown==5.2.0
108
+ geosketch==1.3
109
+ geotorch==0.3.0
110
+ get-annotations==0.1.2
111
+ gevent==21.12.0
112
+ gitdb==4.0.11
113
+ GitPython==3.1.43
114
+ google-pasta==0.2.0
115
+ googleapis-common-protos==1.63.0
116
+ gpustat==1.1.1
117
+ gpytorch==1.10
118
+ gradio_client==0.16.0
119
+ graphlib_backport==1.1.0
120
+ greenlet==1.1.2
121
+ gunicorn==23.0.0
122
+ h11==0.14.0
123
+ h2==4.1.0
124
+ hf-xet==1.2.0
125
+ hf_transfer==0.1.9
126
+ hpack==4.0.0
127
+ httpcore==1.0.5
128
+ httptools==0.6.1
129
+ httpx==0.28.1
130
+ httpx-sse==0.4.0
131
+ huggingface_hub==0.36.1
132
+ humanfriendly==10.0
133
+ hyperframe==6.0.1
134
+ icetk==0.0.4
135
+ igraph==0.11.8
136
+ imageio==2.35.1
137
+ imagesize==1.3.0
138
+ imgaug==0.4.0
139
+ importlib-metadata==7.0.0
140
+ importlib_resources==6.4.5
141
+ inequalipy==1.0.5
142
+ iniconfig==1.1.1
143
+ inquirerpy==0.3.4
144
+ iopath==0.1.10
145
+ isodate==0.7.2
146
+ itsdangerous==2.0.1
147
+ jax==0.4.13
148
+ jaxlib==0.4.13
149
+ jaxtyping==0.2.19
150
+ Jinja2==3.1.6
151
+ jiter==0.9.1
152
+ jmespath==0.10.0
153
+ joblib==1.4.2
154
+ jsonnet==0.17.0
155
+ jsonpatch==1.33
156
+ jsonpath-python==1.0.6
157
+ jsonpickle==2.0.0
158
+ jsonschema==4.23.0
159
+ jsonschema-specifications==2023.12.1
160
+ kaggle==1.7.4.5
161
+ Keras-Preprocessing==1.1.2
162
+ kubernetes==29.0.0
163
+ langchain==0.1.16
164
+ langchain-community==0.0.34
165
+ langchain-core==0.1.46
166
+ langchain-experimental==0.0.57
167
+ langchain-text-splitters==0.0.1
168
+ langcodes==3.4.0
169
+ langdetect==1.0.9
170
+ langsmith==0.1.51
171
+ language_data==1.2.0
172
+ layoutparser==0.3.4
173
+ lazy_loader==0.4
174
+ leidenalg==0.10.2
175
+ Levenshtein==0.25.1
176
+ linear-operator==0.4.0
177
+ litellm==1.77.4
178
+ litellm-enterprise==0.1.20
179
+ litellm-proxy-extras==0.2.19
180
+ llama-index==0.9.35
181
+ llvmlite==0.41.1
182
+ lmdb==1.7.3
183
+ lxml==5.2.1
184
+ madoka==0.7.1
185
+ marisa-trie==1.1.0
186
+ Markdown==3.3.6
187
+ markdown-it-py==3.0.0
188
+ markdown2==2.4.13
189
+ markdownify==0.11.6
190
+ MarkupSafe==2.1.5
191
+ marshmallow==3.21.1
192
+ mdtex2html==1.3.0
193
+ mdurl==0.1.2
194
+ metaphor-python==0.1.23
195
+ ml-dtypes==0.2.0
196
+ monotonic==1.6
197
+ mpmath==1.3.0
198
+ mrcfile==1.5.4
199
+ msal==1.36.0
200
+ msal-extensions==1.3.0
201
+ msg-parser==1.2.0
202
+ msgpack==1.0.8
203
+ msgpack-numpy==0.4.3.2
204
+ multidict==6.0.5
205
+ multipledispatch==1.0.0
206
+ multiprocess==0.70.16
207
+ murmurhash==1.0.10
208
+ mypy-extensions==1.0.0
209
+ narwhals==1.42.1
210
+ natsort==8.4.0
211
+ nest-asyncio==1.6.0
212
+ netCDF4==1.7.2
213
+ neuroHarmonize==2.4.5
214
+ nh3==0.2.17
215
+ ninja==1.11.1.1
216
+ nltk==3.8.1
217
+ numba==0.58.1
218
+ numexpr==2.8.6
219
+ numpoly==1.0.6
220
+ numpy==1.24.4
221
+ numpydoc==1.1.0
222
+ nvidia-ml-py==12.535.133
223
+ nvitop==1.3.2
224
+ oauthlib==3.2.2
225
+ onnx==1.16.0
226
+ onnxruntime==1.15.1
227
+ openai==1.101.0
228
+ openpyxl==3.0.9
229
+ opentelemetry-api==1.24.0
230
+ opentelemetry-exporter-otlp-proto-common==1.24.0
231
+ opentelemetry-exporter-otlp-proto-grpc==1.24.0
232
+ opentelemetry-proto==1.24.0
233
+ opentelemetry-sdk==1.24.0
234
+ opentelemetry-semantic-conventions==0.45b0
235
+ opt-einsum==3.3.0
236
+ optax==0.1.5
237
+ ordered-set==4.1.0
238
+ orjson==3.10.1
239
+ overrides==7.7.0
240
+ packaging==26.2
241
+ pandas==2.0.3
242
+ pandas-stubs==1.2.0.45
243
+ parsimonious==0.8.1
244
+ pathlib==1.0.1
245
+ patsy==1.0.1
246
+ pdf2image==1.17.0
247
+ pfzy==0.3.4
248
+ PICOS==2.6.1
249
+ pikepdf==8.4.1
250
+ pip-search==0.0.12
251
+ pkgutil_resolve_name==1.3.10
252
+ plac==0.9.6
253
+ plotly==6.3.0
254
+ pluggy==1.5.0
255
+ ply==3.11
256
+ pondpond==1.4.1
257
+ pooch==1.8.2
258
+ portalocker==2.4.0
259
+ posthog==3.5.0
260
+ preshed==3.0.9
261
+ prettytable==3.11.0
262
+ primer3-py==2.2.0
263
+ prompt-toolkit==3.0.43
264
+ propcache==0.2.0
265
+ PuLP==3.1.1
266
+ pulsar-client==3.5.0
267
+ pyarrow==17.0.0
268
+ pyarrow-hotfix==0.6
269
+ pyclipper==1.3.0.post5
270
+ pycocotools==2.0.7
271
+ pycparser==2.21
272
+ pydantic==2.10.6
273
+ pydantic_core==2.27.2
274
+ pydeck==0.9.0b1
275
+ pyDOE2==1.3.0
276
+ pydub==0.25.1
277
+ pyfaidx==0.9.0.1
278
+ Pygments==2.19.2
279
+ PyJWT==2.8.0
280
+ pymodbus==3.6.9
281
+ PyMuPDF==1.23.16
282
+ PyMuPDFb==1.23.9
283
+ PyNaCl==1.6.2
284
+ pynndescent==0.5.13
285
+ Pyomo==6.8.2
286
+ pyOpenSSL==24.1.0
287
+ pypandoc==1.13
288
+ pypdf==4.2.0
289
+ pypdfium2==4.29.0
290
+ PyPika==0.48.9
291
+ PyQt5==5.15.7
292
+ PyQt5-Qt5==5.15.17
293
+ PyQt5_sip==12.15.0
294
+ pyro-api==0.1.2
295
+ pyro-ppl==1.9.1
296
+ pysam==0.23.3
297
+ PySocks==1.7.1
298
+ pysqlite3-binary==0.5.2.post3
299
+ pystan==2.19.1.1
300
+ pytesseract==0.3.10
301
+ pytest-cov==5.0.0
302
+ python-dateutil==2.9.0.post0
303
+ python-decouple==3.8
304
+ python-docx==1.1.0
305
+ python-dotenv==1.0.1
306
+ python-iso639==2024.4.27
307
+ python-Levenshtein==0.25.1
308
+ python-multipart==0.0.18
309
+ python-pptx==0.6.23
310
+ python-slugify==8.0.4
311
+ pytorch-pretrained-bert==0.6.2
312
+ pytz==2025.2
313
+ pyvista==0.44.2
314
+ PyWavelets==1.4.1
315
+ PyYAML==6.0.3
316
+ quantile-python==1.1
317
+ rapidfuzz==3.8.1
318
+ rapidocr-onnxruntime==1.3.8
319
+ ray==2.10.0
320
+ rdkit==2024.3.5
321
+ redis==6.1.1
322
+ referencing==0.35.1
323
+ regex==2022.4.24
324
+ requests==2.32.4
325
+ requests-oauthlib==1.3.0
326
+ responses==0.16.0
327
+ rich==13.7.1
328
+ rouge-score==0.1.2
329
+ rpds-py==0.20.1
330
+ rq==2.3.3
331
+ rsa==4.7.2
332
+ ruff==0.4.2
333
+ rustworkx==0.15.1
334
+ s3transfer==0.11.3
335
+ sacrebleu==2.1.0
336
+ sacremoses==0.0.46
337
+ safetensors==0.4.3
338
+ scikit-learn==1.3.2
339
+ scipy==1.10.1
340
+ scooby==0.10.1
341
+ seaborn==0.13.2
342
+ semantic-version==2.10.0
343
+ sentence-transformers==2.2.2
344
+ sentencepiece==0.1.91
345
+ sentry-sdk==2.39.0
346
+ session_info==1.0.1
347
+ sgmllib3k==1.0.0
348
+ shapely==2.0.4
349
+ shellingham==1.5.4
350
+ shortuuid==1.0.13
351
+ six==1.17.0
352
+ smart-open==6.4.0
353
+ smmap==5.0.1
354
+ sniffio==1.3.1
355
+ snowballstemmer==2.2.0
356
+ sobol-seq==0.2.0
357
+ socksio==1.0.0
358
+ soupsieve==2.5
359
+ spacy-legacy==3.0.12
360
+ spacy-loggers==1.0.5
361
+ Sphinx==4.3.1
362
+ sphinxcontrib-applehelp==1.0.2
363
+ sphinxcontrib-devhelp==1.0.2
364
+ sphinxcontrib-htmlhelp==2.0.0
365
+ sphinxcontrib-jsmath==1.0.1
366
+ sphinxcontrib-qthelp==1.0.3
367
+ sphinxcontrib-serializinghtml==1.1.5
368
+ SQLAlchemy==2.0.19
369
+ sqlparse==0.4.2
370
+ sse-starlette==1.8.2
371
+ starlette==0.44.0
372
+ statsmodels==0.14.1
373
+ stdlib-list==0.10.0
374
+ streamlit==1.30.0
375
+ streamlit-aggrid==0.3.4.post3
376
+ streamlit-antd-components==0.3.1
377
+ streamlit-chatbox==1.1.11
378
+ streamlit-feedback==0.1.3
379
+ streamlit-modal==0.1.0
380
+ streamlit-option-menu==0.3.12
381
+ strsimpy==0.2.1
382
+ svgwrite==1.4.3
383
+ sympy==1.13.3
384
+ tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
385
+ tabulate==0.8.9
386
+ tenacity==8.2.3
387
+ tensorboard-plugin-wit==1.8.0
388
+ tensorboardX==2.4.1
389
+ text-unidecode==1.3
390
+ texttable==1.7.0
391
+ thefuzz==0.22.1
392
+ threadpoolctl==3.5.0
393
+ tifffile==2023.7.10
394
+ tiktoken==0.7.0
395
+ timm==0.9.16
396
+ tk==0.1.0
397
+ tokenizers==0.20.3
398
+ toml==0.10.2
399
+ tomlkit==0.12.0
400
+ toolz==0.12.1
401
+ torch==2.1.2+cpu
402
+ torch-geometric==2.6.1
403
+ torchaudio==2.1.2+cu118
404
+ torchtext==0.4.0
405
+ tornado==6.4
406
+ tqdm==4.67.1
407
+ transformer-lens==2.16.1
408
+ transformers==4.46.3
409
+ transformers-stream-generator==0.0.5
410
+ typed-argument-parser==1.10.1
411
+ typeguard==4.4.0
412
+ typer==0.9.4
413
+ types-requests==2.31.0.20240406
414
+ typing-inspect==0.9.0
415
+ typing-utils==0.1.0
416
+ typing_extensions==4.13.2
417
+ tzdata==2024.1
418
+ tzlocal==5.2
419
+ umap-learn==0.5.7
420
+ Unidecode==1.3.2
421
+ unittest-xml-reporting==3.2.0
422
+ unstructured==0.11.0
423
+ unstructured-client==0.22.0
424
+ unstructured-inference==0.7.15
425
+ unstructured.pytesseract==0.3.12
426
+ uvicorn==0.29.0
427
+ uvloop==0.21.0
428
+ validators==0.28.1
429
+ vllm==0.2.7
430
+ vtk==9.3.1
431
+ wandb==0.22.0
432
+ watchdog==3.0.0
433
+ watchfiles==0.21.0
434
+ wavedrom==2.0.3.post3
435
+ weasel==0.3.4
436
+ websocket-client==1.8.0
437
+ websockets==13.1
438
+ Werkzeug==2.0.2
439
+ word2number==1.1
440
+ xlrd==2.0.1
441
+ XlsxWriter==3.0.2
442
+ xxhash==2.0.2
443
+ Yapsy==1.12.2
444
+ yarl==1.15.2
445
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446
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1
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+ python-decouple==3.8
308
+ python-docx==1.1.0
309
+ python-dotenv==1.0.1
310
+ python-iso639==2024.4.27
311
+ python-Levenshtein==0.25.1
312
+ python-multipart==0.0.18
313
+ python-pptx==0.6.23
314
+ python-slugify==8.0.4
315
+ pytorch-pretrained-bert==0.6.2
316
+ pytz==2025.2
317
+ pyvista==0.44.2
318
+ PyWavelets==1.4.1
319
+ PyYAML==6.0.3
320
+ quantile-python==1.1
321
+ rapidfuzz==3.8.1
322
+ rapidocr-onnxruntime==1.3.8
323
+ ray==2.10.0
324
+ rdkit==2024.3.5
325
+ redis==6.1.1
326
+ referencing==0.35.1
327
+ regex==2022.4.24
328
+ requests==2.32.4
329
+ requests-oauthlib==1.3.0
330
+ responses==0.16.0
331
+ rich==13.7.1
332
+ rouge-score==0.1.2
333
+ rpds-py==0.20.1
334
+ rq==2.3.3
335
+ rsa==4.7.2
336
+ ruff==0.4.2
337
+ rustworkx==0.15.1
338
+ s3transfer==0.11.3
339
+ sacrebleu==2.1.0
340
+ sacremoses==0.0.46
341
+ safetensors==0.4.3
342
+ scooby==0.10.1
343
+ seaborn==0.13.2
344
+ semantic-version==2.10.0
345
+ sentence-transformers==2.2.2
346
+ sentencepiece==0.1.91
347
+ sentry-sdk==2.39.0
348
+ session_info==1.0.1
349
+ sgmllib3k==1.0.0
350
+ shapely==2.0.4
351
+ shellingham==1.5.4
352
+ shortuuid==1.0.13
353
+ six==1.17.0
354
+ smart-open==6.4.0
355
+ smmap==5.0.1
356
+ sniffio==1.3.1
357
+ snowballstemmer==2.2.0
358
+ sobol-seq==0.2.0
359
+ socksio==1.0.0
360
+ soupsieve==2.5
361
+ spacy-legacy==3.0.12
362
+ spacy-loggers==1.0.5
363
+ Sphinx==4.3.1
364
+ sphinxcontrib-applehelp==1.0.2
365
+ sphinxcontrib-devhelp==1.0.2
366
+ sphinxcontrib-htmlhelp==2.0.0
367
+ sphinxcontrib-jsmath==1.0.1
368
+ sphinxcontrib-qthelp==1.0.3
369
+ sphinxcontrib-serializinghtml==1.1.5
370
+ SQLAlchemy==2.0.19
371
+ sqlparse==0.4.2
372
+ sse-starlette==1.8.2
373
+ starlette==0.44.0
374
+ statsmodels==0.14.1
375
+ stdlib-list==0.10.0
376
+ streamlit==1.30.0
377
+ streamlit-aggrid==0.3.4.post3
378
+ streamlit-antd-components==0.3.1
379
+ streamlit-chatbox==1.1.11
380
+ streamlit-feedback==0.1.3
381
+ streamlit-modal==0.1.0
382
+ streamlit-option-menu==0.3.12
383
+ strsimpy==0.2.1
384
+ svgwrite==1.4.3
385
+ tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
386
+ tabulate==0.8.9
387
+ tenacity==8.2.3
388
+ tensorboard-plugin-wit==1.8.0
389
+ tensorboardX==2.4.1
390
+ text-unidecode==1.3
391
+ texttable==1.7.0
392
+ thefuzz==0.22.1
393
+ threadpoolctl==3.5.0
394
+ tifffile==2023.7.10
395
+ tiktoken==0.7.0
396
+ timm==0.9.16
397
+ tk==0.1.0
398
+ tokenizers==0.20.3
399
+ toml==0.10.2
400
+ tomlkit==0.12.0
401
+ toolz==0.12.1
402
+ torch==2.4.1+cpu
403
+ torch-geometric==2.6.1
404
+ torchaudio==2.1.2+cu118
405
+ torchtext==0.4.0
406
+ tornado==6.4
407
+ tqdm==4.67.1
408
+ transformer-lens==2.16.1
409
+ transformers==4.46.3
410
+ transformers-stream-generator==0.0.5
411
+ typed-argument-parser==1.10.1
412
+ typeguard==4.4.0
413
+ typer==0.9.4
414
+ types-requests==2.31.0.20240406
415
+ typing-inspect==0.9.0
416
+ typing-utils==0.1.0
417
+ typing_extensions==4.13.2
418
+ tzdata==2024.1
419
+ tzlocal==5.2
420
+ umap-learn==0.5.7
421
+ Unidecode==1.3.2
422
+ unittest-xml-reporting==3.2.0
423
+ unstructured==0.11.0
424
+ unstructured-client==0.22.0
425
+ unstructured-inference==0.7.15
426
+ unstructured.pytesseract==0.3.12
427
+ urllib3==2.2.3
428
+ uvicorn==0.29.0
429
+ uvloop==0.21.0
430
+ validators==0.28.1
431
+ vllm==0.2.7
432
+ vtk==9.3.1
433
+ wandb==0.22.0
434
+ watchdog==3.0.0
435
+ watchfiles==0.21.0
436
+ wavedrom==2.0.3.post3
437
+ weasel==0.3.4
438
+ websocket-client==1.8.0
439
+ websockets==13.1
440
+ Werkzeug==2.0.2
441
+ word2number==1.1
442
+ xlrd==2.0.1
443
+ XlsxWriter==3.0.2
444
+ xxhash==2.0.2
445
+ Yapsy==1.12.2
446
+ yarl==1.15.2
447
+ youtube-search==2.1.2
448
+ zipp==3.20.2
449
+ zope.event==4.5.0
450
+ zstandard==0.23.0
configs/015_guidance_free_ar_generation_test/pip-freeze.txt ADDED
@@ -0,0 +1,450 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ absl-py==2.3.1
2
+ accelerate==0.24.1
3
+ aiofiles==23.2.1
4
+ aiohappyeyeballs==2.4.4
5
+ aiohttp==3.10.11
6
+ aioprometheus==23.12.0
7
+ aiosignal==1.3.1
8
+ alabaster==0.7.12
9
+ allennlp==0.8.4
10
+ altair==5.3.0
11
+ annotated-types==0.6.0
12
+ anyio==3.7.1
13
+ APScheduler==3.11.2
14
+ arxiv==2.1.0
15
+ astunparse==1.6.3
16
+ async-timeout==4.0.3
17
+ attrs==25.3.0
18
+ autograd==1.7.0
19
+ autoray==0.6.12
20
+ awscli==1.32.93
21
+ azure-core==1.33.0
22
+ azure-identity==1.21.0
23
+ azure-storage-blob==12.26.0
24
+ Babel==2.9.1
25
+ backoff==2.2.1
26
+ backports.zoneinfo==0.2.1
27
+ bcrypt==4.1.2
28
+ beartype==0.14.1
29
+ better-abc==0.0.3
30
+ biopython==1.83
31
+ bitarray==2.5.1
32
+ bitsandbytes==0.43.1
33
+ blessed==1.20.0
34
+ blis==0.7.11
35
+ boto3==1.36.0
36
+ botocore==1.36.26
37
+ botorch==0.8.5
38
+ bpl==0.1.1
39
+ Brotli==1.1.0
40
+ bs4==0.0.2
41
+ cachetools==4.2.4
42
+ certifi==2026.4.22
43
+ cffi==1.15.0
44
+ cftime==1.6.4.post1
45
+ chaospy==3.3.9
46
+ charset-normalizer==3.4.7
47
+ chex==0.1.7
48
+ chroma-hnswlib==0.7.3
49
+ chromadb==0.4.15
50
+ click==8.1.7
51
+ cloudpathlib==0.16.0
52
+ cobra==0.29.1
53
+ cohere==5.3.3
54
+ coloredlogs==15.0.1
55
+ confection==0.1.4
56
+ ConfigArgParse==1.5.3
57
+ conllu==0.11
58
+ coverage==7.6.1
59
+ cpm-kernels==1.0.11
60
+ cryptography==42.0.5
61
+ cvxopt==1.3.2
62
+ cymem==2.0.8
63
+ Cython==0.29.30
64
+ dataclasses==0.6
65
+ dataclasses-json==0.6.4
66
+ datasets==2.19.0
67
+ deepdiff==7.0.1
68
+ Deprecated==1.2.14
69
+ deprecation==2.1.0
70
+ diffusers==0.36.0
71
+ dill==0.3.8
72
+ distro==1.9.0
73
+ dm-tree==0.1.8
74
+ dnspython==2.6.1
75
+ docstring_parser==0.17.0
76
+ docutils==0.15.2
77
+ dotenv==0.9.9
78
+ duckduckgo-search==3.9.9
79
+ editdistance==0.6.0
80
+ effdet==0.4.1
81
+ einops==0.7.0
82
+ email-validator==2.3.0
83
+ emoji==2.11.1
84
+ equinox==0.10.4
85
+ et-xmlfile==1.1.0
86
+ eval_type_backport==0.2.2
87
+ exceptiongroup==1.2.1
88
+ fairseq==0.10.2
89
+ faiss-cpu==1.7.4
90
+ faiss-gpu==1.7.2
91
+ fancy-einsum==0.0.3
92
+ fastapi==0.115.14
93
+ fastapi-sso==0.16.0
94
+ fastavro==1.9.4
95
+ fastuuid==0.13.5
96
+ fbpca==1.0
97
+ feedparser==6.0.10
98
+ ffmpy==0.3.2
99
+ filelock==3.16.1
100
+ filetype==1.2.0
101
+ finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
102
+ flaky==3.7.0
103
+ Flask-Cors==3.0.10
104
+ frozenlist==1.4.1
105
+ fschat==0.2.35
106
+ fsspec==2025.3.0
107
+ ftfy==6.0.3
108
+ future==0.18.2
109
+ fuzzywuzzy==0.18.0
110
+ gdown==5.2.0
111
+ geosketch==1.3
112
+ geotorch==0.3.0
113
+ get-annotations==0.1.2
114
+ gevent==21.12.0
115
+ gitdb==4.0.11
116
+ GitPython==3.1.43
117
+ google-pasta==0.2.0
118
+ googleapis-common-protos==1.63.0
119
+ gpustat==1.1.1
120
+ gpytorch==1.10
121
+ gradio_client==0.16.0
122
+ graphlib_backport==1.1.0
123
+ greenlet==1.1.2
124
+ gunicorn==23.0.0
125
+ h11==0.14.0
126
+ h2==4.1.0
127
+ hf-xet==1.2.0
128
+ hf_transfer==0.1.9
129
+ hpack==4.0.0
130
+ httpcore==1.0.5
131
+ httptools==0.6.1
132
+ httpx==0.28.1
133
+ httpx-sse==0.4.0
134
+ huggingface_hub==0.36.1
135
+ humanfriendly==10.0
136
+ hyperframe==6.0.1
137
+ icetk==0.0.4
138
+ idna==3.13
139
+ igraph==0.11.8
140
+ imageio==2.35.1
141
+ imagesize==1.3.0
142
+ imgaug==0.4.0
143
+ importlib-metadata==7.0.0
144
+ importlib_resources==6.4.5
145
+ inequalipy==1.0.5
146
+ iniconfig==1.1.1
147
+ inquirerpy==0.3.4
148
+ iopath==0.1.10
149
+ isodate==0.7.2
150
+ itsdangerous==2.0.1
151
+ jax==0.4.13
152
+ jaxlib==0.4.13
153
+ jaxtyping==0.2.19
154
+ Jinja2==3.1.6
155
+ jiter==0.9.1
156
+ jmespath==0.10.0
157
+ joblib==1.4.2
158
+ jsonnet==0.17.0
159
+ jsonpatch==1.33
160
+ jsonpath-python==1.0.6
161
+ jsonpickle==2.0.0
162
+ jsonschema==4.23.0
163
+ jsonschema-specifications==2023.12.1
164
+ kaggle==1.7.4.5
165
+ Keras-Preprocessing==1.1.2
166
+ kubernetes==29.0.0
167
+ langchain==0.1.16
168
+ langchain-community==0.0.34
169
+ langchain-core==0.1.46
170
+ langchain-experimental==0.0.57
171
+ langchain-text-splitters==0.0.1
172
+ langcodes==3.4.0
173
+ langdetect==1.0.9
174
+ langsmith==0.1.51
175
+ language_data==1.2.0
176
+ layoutparser==0.3.4
177
+ lazy_loader==0.4
178
+ leidenalg==0.10.2
179
+ Levenshtein==0.25.1
180
+ linear-operator==0.4.0
181
+ litellm==1.77.4
182
+ litellm-enterprise==0.1.20
183
+ litellm-proxy-extras==0.2.19
184
+ llama-index==0.9.35
185
+ llvmlite==0.41.1
186
+ lmdb==1.7.3
187
+ lxml==5.2.1
188
+ madoka==0.7.1
189
+ marisa-trie==1.1.0
190
+ Markdown==3.3.6
191
+ markdown-it-py==3.0.0
192
+ markdown2==2.4.13
193
+ markdownify==0.11.6
194
+ MarkupSafe==2.1.5
195
+ marshmallow==3.21.1
196
+ mdtex2html==1.3.0
197
+ mdurl==0.1.2
198
+ metaphor-python==0.1.23
199
+ ml-dtypes==0.2.0
200
+ monotonic==1.6
201
+ mrcfile==1.5.4
202
+ msal==1.36.0
203
+ msal-extensions==1.3.0
204
+ msg-parser==1.2.0
205
+ msgpack==1.0.8
206
+ msgpack-numpy==0.4.3.2
207
+ multidict==6.0.5
208
+ multipledispatch==1.0.0
209
+ multiprocess==0.70.16
210
+ murmurhash==1.0.10
211
+ mypy-extensions==1.0.0
212
+ narwhals==1.42.1
213
+ natsort==8.4.0
214
+ nest-asyncio==1.6.0
215
+ netCDF4==1.7.2
216
+ neuroHarmonize==2.4.5
217
+ nh3==0.2.17
218
+ ninja==1.11.1.1
219
+ nltk==3.8.1
220
+ numba==0.58.1
221
+ numexpr==2.8.6
222
+ numpoly==1.0.6
223
+ numpy==1.24.4
224
+ numpydoc==1.1.0
225
+ nvidia-ml-py==12.535.133
226
+ nvitop==1.3.2
227
+ oauthlib==3.2.2
228
+ onnx==1.16.0
229
+ onnxruntime==1.15.1
230
+ openai==1.101.0
231
+ openpyxl==3.0.9
232
+ opentelemetry-api==1.24.0
233
+ opentelemetry-exporter-otlp-proto-common==1.24.0
234
+ opentelemetry-exporter-otlp-proto-grpc==1.24.0
235
+ opentelemetry-proto==1.24.0
236
+ opentelemetry-sdk==1.24.0
237
+ opentelemetry-semantic-conventions==0.45b0
238
+ opt-einsum==3.3.0
239
+ optax==0.1.5
240
+ ordered-set==4.1.0
241
+ orjson==3.10.1
242
+ overrides==7.7.0
243
+ packaging==26.2
244
+ pandas==2.0.3
245
+ pandas-stubs==1.2.0.45
246
+ parsimonious==0.8.1
247
+ pathlib==1.0.1
248
+ patsy==1.0.1
249
+ pdf2image==1.17.0
250
+ pfzy==0.3.4
251
+ PICOS==2.6.1
252
+ pikepdf==8.4.1
253
+ pillow==10.4.0
254
+ pip-search==0.0.12
255
+ pkgutil_resolve_name==1.3.10
256
+ plac==0.9.6
257
+ plotly==6.3.0
258
+ pluggy==1.5.0
259
+ ply==3.11
260
+ pondpond==1.4.1
261
+ pooch==1.8.2
262
+ portalocker==2.4.0
263
+ posthog==3.5.0
264
+ preshed==3.0.9
265
+ prettytable==3.11.0
266
+ primer3-py==2.2.0
267
+ prompt-toolkit==3.0.43
268
+ propcache==0.2.0
269
+ PuLP==3.1.1
270
+ pulsar-client==3.5.0
271
+ pyarrow==17.0.0
272
+ pyarrow-hotfix==0.6
273
+ pyclipper==1.3.0.post5
274
+ pycocotools==2.0.7
275
+ pycparser==2.21
276
+ pydantic==2.10.6
277
+ pydantic_core==2.27.2
278
+ pydeck==0.9.0b1
279
+ pyDOE2==1.3.0
280
+ pydub==0.25.1
281
+ pyfaidx==0.9.0.1
282
+ Pygments==2.19.2
283
+ PyJWT==2.8.0
284
+ pymodbus==3.6.9
285
+ PyMuPDF==1.23.16
286
+ PyMuPDFb==1.23.9
287
+ PyNaCl==1.6.2
288
+ pynndescent==0.5.13
289
+ Pyomo==6.8.2
290
+ pyOpenSSL==24.1.0
291
+ pypandoc==1.13
292
+ pypdf==4.2.0
293
+ pypdfium2==4.29.0
294
+ PyPika==0.48.9
295
+ PyQt5==5.15.7
296
+ PyQt5-Qt5==5.15.17
297
+ PyQt5_sip==12.15.0
298
+ pyro-api==0.1.2
299
+ pyro-ppl==1.9.1
300
+ pysam==0.23.3
301
+ PySocks==1.7.1
302
+ pysqlite3-binary==0.5.2.post3
303
+ pystan==2.19.1.1
304
+ pytesseract==0.3.10
305
+ pytest-cov==5.0.0
306
+ python-dateutil==2.9.0.post0
307
+ python-decouple==3.8
308
+ python-docx==1.1.0
309
+ python-dotenv==1.0.1
310
+ python-iso639==2024.4.27
311
+ python-Levenshtein==0.25.1
312
+ python-multipart==0.0.18
313
+ python-pptx==0.6.23
314
+ python-slugify==8.0.4
315
+ pytorch-pretrained-bert==0.6.2
316
+ pytz==2025.2
317
+ pyvista==0.44.2
318
+ PyWavelets==1.4.1
319
+ PyYAML==6.0.3
320
+ quantile-python==1.1
321
+ rapidfuzz==3.8.1
322
+ rapidocr-onnxruntime==1.3.8
323
+ ray==2.10.0
324
+ rdkit==2024.3.5
325
+ redis==6.1.1
326
+ referencing==0.35.1
327
+ regex==2022.4.24
328
+ requests==2.32.4
329
+ requests-oauthlib==1.3.0
330
+ responses==0.16.0
331
+ rich==13.7.1
332
+ rouge-score==0.1.2
333
+ rpds-py==0.20.1
334
+ rq==2.3.3
335
+ rsa==4.7.2
336
+ ruff==0.4.2
337
+ rustworkx==0.15.1
338
+ s3transfer==0.11.3
339
+ sacrebleu==2.1.0
340
+ sacremoses==0.0.46
341
+ safetensors==0.4.3
342
+ scooby==0.10.1
343
+ seaborn==0.13.2
344
+ semantic-version==2.10.0
345
+ sentence-transformers==2.2.2
346
+ sentencepiece==0.1.91
347
+ sentry-sdk==2.39.0
348
+ session_info==1.0.1
349
+ sgmllib3k==1.0.0
350
+ shapely==2.0.4
351
+ shellingham==1.5.4
352
+ shortuuid==1.0.13
353
+ six==1.17.0
354
+ smart-open==6.4.0
355
+ smmap==5.0.1
356
+ sniffio==1.3.1
357
+ snowballstemmer==2.2.0
358
+ sobol-seq==0.2.0
359
+ socksio==1.0.0
360
+ soupsieve==2.5
361
+ spacy-legacy==3.0.12
362
+ spacy-loggers==1.0.5
363
+ Sphinx==4.3.1
364
+ sphinxcontrib-applehelp==1.0.2
365
+ sphinxcontrib-devhelp==1.0.2
366
+ sphinxcontrib-htmlhelp==2.0.0
367
+ sphinxcontrib-jsmath==1.0.1
368
+ sphinxcontrib-qthelp==1.0.3
369
+ sphinxcontrib-serializinghtml==1.1.5
370
+ SQLAlchemy==2.0.19
371
+ sqlparse==0.4.2
372
+ sse-starlette==1.8.2
373
+ starlette==0.44.0
374
+ statsmodels==0.14.1
375
+ stdlib-list==0.10.0
376
+ streamlit==1.30.0
377
+ streamlit-aggrid==0.3.4.post3
378
+ streamlit-antd-components==0.3.1
379
+ streamlit-chatbox==1.1.11
380
+ streamlit-feedback==0.1.3
381
+ streamlit-modal==0.1.0
382
+ streamlit-option-menu==0.3.12
383
+ strsimpy==0.2.1
384
+ svgwrite==1.4.3
385
+ tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
386
+ tabulate==0.8.9
387
+ tenacity==8.2.3
388
+ tensorboard-plugin-wit==1.8.0
389
+ tensorboardX==2.4.1
390
+ text-unidecode==1.3
391
+ texttable==1.7.0
392
+ thefuzz==0.22.1
393
+ threadpoolctl==3.5.0
394
+ tifffile==2023.7.10
395
+ tiktoken==0.7.0
396
+ timm==0.9.16
397
+ tk==0.1.0
398
+ tokenizers==0.20.3
399
+ toml==0.10.2
400
+ tomlkit==0.12.0
401
+ toolz==0.12.1
402
+ torch==2.4.1+cpu
403
+ torch-geometric==2.6.1
404
+ torchaudio==2.1.2+cu118
405
+ torchtext==0.4.0
406
+ tornado==6.4
407
+ tqdm==4.67.1
408
+ transformer-lens==2.16.1
409
+ transformers==4.46.3
410
+ transformers-stream-generator==0.0.5
411
+ typed-argument-parser==1.10.1
412
+ typeguard==4.4.0
413
+ typer==0.9.4
414
+ types-requests==2.31.0.20240406
415
+ typing-inspect==0.9.0
416
+ typing-utils==0.1.0
417
+ typing_extensions==4.13.2
418
+ tzdata==2024.1
419
+ tzlocal==5.2
420
+ umap-learn==0.5.7
421
+ Unidecode==1.3.2
422
+ unittest-xml-reporting==3.2.0
423
+ unstructured==0.11.0
424
+ unstructured-client==0.22.0
425
+ unstructured-inference==0.7.15
426
+ unstructured.pytesseract==0.3.12
427
+ urllib3==2.2.3
428
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429
+ uvloop==0.21.0
430
+ validators==0.28.1
431
+ vllm==0.2.7
432
+ vtk==9.3.1
433
+ wandb==0.22.0
434
+ watchdog==3.0.0
435
+ watchfiles==0.21.0
436
+ wavedrom==2.0.3.post3
437
+ weasel==0.3.4
438
+ websocket-client==1.8.0
439
+ websockets==13.1
440
+ Werkzeug==2.0.2
441
+ word2number==1.1
442
+ xlrd==2.0.1
443
+ XlsxWriter==3.0.2
444
+ xxhash==2.0.2
445
+ Yapsy==1.12.2
446
+ yarl==1.15.2
447
+ youtube-search==2.1.2
448
+ zipp==3.20.2
449
+ zope.event==4.5.0
450
+ zstandard==0.23.0
configs/029_test/editable.txt ADDED
File without changes
configs/029_test/env.yml ADDED
@@ -0,0 +1,66 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ name: 029_test
2
+ channels:
3
+ - conda-forge
4
+ - defaults
5
+ dependencies:
6
+ - _libgcc_mutex=0.1
7
+ - _openmp_mutex=4.5
8
+ - bzip2=1.0.8
9
+ - ca-certificates=2025.8.3
10
+ - ld_impl_linux-64=2.44
11
+ - libffi=3.4.6
12
+ - libgcc=15.1.0
13
+ - libgcc-ng=15.1.0
14
+ - libgomp=15.1.0
15
+ - liblzma=5.8.1
16
+ - liblzma-devel=5.8.1
17
+ - libnsl=2.0.1
18
+ - libsqlite=3.50.4
19
+ - libuuid=2.41.2
20
+ - libxcrypt=4.4.36
21
+ - libzlib=1.3.1
22
+ - ncurses=6.5
23
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24
+ - pip=22.1.2
25
+ - python=3.8.20
26
+ - readline=8.2
27
+ - setuptools=70.3.0
28
+ - tk=8.6.13
29
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30
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31
+ - xz-gpl-tools=5.8.1
32
+ - xz-tools=5.8.1
33
+ - pip:
34
+ - appdirs==1.4.4
35
+ - certifi==2026.2.25
36
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37
+ - cycler==0.12.1
38
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39
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40
+ - fsspec==2025.3.0
41
+ - httpx==0.28.1
42
+ - idna==3.10
43
+ - importlib-resources==6.4.5
44
+ - inflate64==1.0.0
45
+ - jinja2==3.1.6
46
+ - kiwisolver==1.4.7
47
+ - markupsafe==2.1.5
48
+ - matplotlib==3.7.5
49
+ - multivolumefile==0.2.3
50
+ - numpy==1.24.4
51
+ - packaging==25.0
52
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53
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54
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55
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56
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57
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58
+ - pyppmd==1.1.0
59
+ - pyyaml==6.0.3
60
+ - pyzstd==0.18.0
61
+ - requests==2.32.4
62
+ - scipy==1.10.1
63
+ - six==1.17.0
64
+ - typing-extensions==4.13.2
65
+ - urllib3==2.2.3
66
+ prefix: /home/lily/yz979/anaconda3/envs/029_test
configs/029_test/explicit.txt ADDED
@@ -0,0 +1,31 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # This file may be used to create an environment using:
2
+ # $ conda create --name <env> --file <this file>
3
+ # platform: linux-64
4
+ @EXPLICIT
5
+ https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
6
+ https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.8.3-hbd8a1cb_0.conda#74784ee3d225fc3dca89edb635b4e5cc
7
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8
+ https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.1.0-h767d61c_5.conda#dcd5ff1940cd38f6df777cac86819d60
9
+ https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
10
+ https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.1.0-h767d61c_5.conda#264fbfba7fb20acf3b29cde153e345ce
11
+ https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_8.conda#51a19bba1b8ebfb60df25cde030b7ebc
12
+ https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_1.conda#ede4673863426c0883c0063d853bbd85
13
+ https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.1.0-h69a702a_5.conda#069afdf8ea72504e48d23ae1171d951c
14
+ https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.1-hb9d3cd8_2.conda#1a580f7796c7bf6393fddb8bbbde58dc
15
+ https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda#d864d34357c3b65a4b731f78c0801dc4
16
+ https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.41.2-he9a06e4_0.conda#80c07c68d2f6870250959dcc95b209d1
17
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18
+ https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
19
+ https://conda.anaconda.org/conda-forge/linux-64/openssl-3.5.3-h26f9b46_1.conda#4fc6c4c88da64c0219c0c6c0408cedd4
20
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21
+ https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.50.4-h0c1763c_0.conda#0b367fad34931cb79e0d6b7e5c06bb1c
22
+ https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
23
+ https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8c095d6_2.conda#283b96675859b20a825f8fa30f311446
24
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25
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26
+ https://conda.anaconda.org/conda-forge/linux-64/xz-tools-5.8.1-hb9d3cd8_2.conda#1bad2995c8f1c8075c6c331bf96e46fb
27
+ https://conda.anaconda.org/conda-forge/linux-64/xz-5.8.1-hbcc6ac9_2.conda#68eae977d7d1196d32b636a026dc015d
28
+ https://conda.anaconda.org/conda-forge/linux-64/python-3.8.20-h4a871b0_2_cpython.conda#05ffff2f44ad60b94ecb53d029c6bdf7
29
+ https://conda.anaconda.org/conda-forge/noarch/setuptools-70.3.0-pyhd8ed1ab_0.conda#693bb57e8f92120caa956898065f3627
30
+ https://conda.anaconda.org/conda-forge/noarch/wheel-0.45.1-pyhd8ed1ab_0.conda#bdb2f437ce62fd2f1fef9119a37a12d9
31
+ https://conda.anaconda.org/conda-forge/noarch/pip-22.1.2-pyhd8ed1ab_0.tar.bz2#d29185c662a424f8bea1103270b85c96
configs/029_test/meta.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "env": "029_test",
3
+ "python_version": "3.8.20",
4
+ "has_cuda_hint": false,
5
+ "editable_count": 0,
6
+ "source_prefix": "/home/lily/yz979/anaconda3/envs/029_test",
7
+ "exported_at": "2026-05-17T04:03:34Z"
8
+ }
configs/029_test/pip-clean.txt ADDED
@@ -0,0 +1,464 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ absl-py==2.3.1
2
+ accelerate==0.24.1
3
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4
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5
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7
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8
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10
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11
+ annotated-types==0.6.0
12
+ anyio==3.7.1
13
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14
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15
+ arxiv==2.1.0
16
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17
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18
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19
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20
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21
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22
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23
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24
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25
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26
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27
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28
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29
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30
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31
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32
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33
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34
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35
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38
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40
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41
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42
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43
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44
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53
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54
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55
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56
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57
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58
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59
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62
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63
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64
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65
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66
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67
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68
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69
+ datasets==2.19.0
70
+ deepdiff==7.0.1
71
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72
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73
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74
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75
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76
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78
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80
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83
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84
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85
+ email-validator==2.3.0
86
+ emoji==2.11.1
87
+ equinox==0.10.4
88
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89
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90
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91
+ fairseq==0.10.2
92
+ faiss-cpu==1.7.4
93
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94
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95
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96
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97
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98
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99
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100
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101
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102
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103
+ finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
104
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105
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106
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107
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108
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109
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110
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111
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112
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113
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114
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115
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118
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119
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120
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121
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122
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123
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124
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125
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128
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130
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131
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132
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133
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134
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135
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136
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137
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138
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139
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140
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141
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142
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143
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144
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145
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146
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147
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148
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149
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151
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152
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153
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154
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155
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156
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157
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158
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159
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160
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161
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162
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163
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164
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165
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166
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167
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168
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169
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170
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171
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172
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173
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174
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175
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177
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178
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181
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182
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183
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184
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185
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186
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187
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188
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189
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190
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191
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192
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193
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194
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195
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196
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197
+ markdown2==2.4.13
198
+ markdownify==0.11.6
199
+ MarkupSafe==2.1.5
200
+ marshmallow==3.21.1
201
+ matplotlib==3.7.5
202
+ mdtex2html==1.3.0
203
+ mdurl==0.1.2
204
+ metaphor-python==0.1.23
205
+ ml-dtypes==0.2.0
206
+ monotonic==1.6
207
+ mrcfile==1.5.4
208
+ msal==1.36.0
209
+ msal-extensions==1.3.0
210
+ msg-parser==1.2.0
211
+ msgpack==1.0.8
212
+ msgpack-numpy==0.4.3.2
213
+ multidict==6.0.5
214
+ multipledispatch==1.0.0
215
+ multiprocess==0.70.16
216
+ multivolumefile==0.2.3
217
+ murmurhash==1.0.10
218
+ mypy-extensions==1.0.0
219
+ narwhals==1.42.1
220
+ natsort==8.4.0
221
+ nest-asyncio==1.6.0
222
+ netCDF4==1.7.2
223
+ neuroHarmonize==2.4.5
224
+ nh3==0.2.17
225
+ ninja==1.11.1.1
226
+ nltk==3.8.1
227
+ numba==0.58.1
228
+ numexpr==2.8.6
229
+ numpoly==1.0.6
230
+ numpy==1.24.4
231
+ numpydoc==1.1.0
232
+ nvidia-ml-py==12.535.133
233
+ nvitop==1.3.2
234
+ oauthlib==3.2.2
235
+ onnx==1.16.0
236
+ onnxruntime==1.15.1
237
+ openai==1.101.0
238
+ openpyxl==3.0.9
239
+ opentelemetry-api==1.24.0
240
+ opentelemetry-exporter-otlp-proto-common==1.24.0
241
+ opentelemetry-exporter-otlp-proto-grpc==1.24.0
242
+ opentelemetry-proto==1.24.0
243
+ opentelemetry-sdk==1.24.0
244
+ opentelemetry-semantic-conventions==0.45b0
245
+ opt-einsum==3.3.0
246
+ optax==0.1.5
247
+ ordered-set==4.1.0
248
+ orjson==3.10.1
249
+ overrides==7.7.0
250
+ packaging==26.2
251
+ pandas==2.0.3
252
+ pandas-stubs==1.2.0.45
253
+ parsimonious==0.8.1
254
+ pathlib==1.0.1
255
+ patsy==1.0.1
256
+ pdf2image==1.17.0
257
+ pfzy==0.3.4
258
+ PICOS==2.6.1
259
+ pikepdf==8.4.1
260
+ pillow==10.4.0
261
+ pip-search==0.0.12
262
+ pkgutil_resolve_name==1.3.10
263
+ plac==0.9.6
264
+ plotly==6.3.0
265
+ pluggy==1.5.0
266
+ ply==3.11
267
+ pondpond==1.4.1
268
+ pooch==1.8.2
269
+ portalocker==2.4.0
270
+ posthog==3.5.0
271
+ preshed==3.0.9
272
+ prettytable==3.11.0
273
+ primer3-py==2.2.0
274
+ prompt-toolkit==3.0.43
275
+ propcache==0.2.0
276
+ psutil==7.2.2
277
+ PuLP==3.1.1
278
+ pulsar-client==3.5.0
279
+ py7zr==0.22.0
280
+ pyarrow==17.0.0
281
+ pyarrow-hotfix==0.6
282
+ pybcj==1.0.2
283
+ pyclipper==1.3.0.post5
284
+ pycocotools==2.0.7
285
+ pycparser==2.21
286
+ pycryptodomex==3.23.0
287
+ pydantic==2.10.6
288
+ pydantic_core==2.27.2
289
+ pydeck==0.9.0b1
290
+ pyDOE2==1.3.0
291
+ pydub==0.25.1
292
+ pyfaidx==0.9.0.1
293
+ Pygments==2.19.2
294
+ PyJWT==2.8.0
295
+ pymodbus==3.6.9
296
+ PyMuPDF==1.23.16
297
+ PyMuPDFb==1.23.9
298
+ PyNaCl==1.6.2
299
+ pynndescent==0.5.13
300
+ Pyomo==6.8.2
301
+ pyOpenSSL==24.1.0
302
+ pypandoc==1.13
303
+ pyparsing==3.1.4
304
+ pypdf==4.2.0
305
+ pypdfium2==4.29.0
306
+ PyPika==0.48.9
307
+ pyppmd==1.1.0
308
+ PyQt5==5.15.7
309
+ PyQt5-Qt5==5.15.17
310
+ PyQt5_sip==12.15.0
311
+ pyro-api==0.1.2
312
+ pyro-ppl==1.9.1
313
+ pysam==0.23.3
314
+ PySocks==1.7.1
315
+ pysqlite3-binary==0.5.2.post3
316
+ pystan==2.19.1.1
317
+ pytesseract==0.3.10
318
+ pytest-cov==5.0.0
319
+ python-dateutil==2.9.0.post0
320
+ python-decouple==3.8
321
+ python-docx==1.1.0
322
+ python-dotenv==1.0.1
323
+ python-iso639==2024.4.27
324
+ python-Levenshtein==0.25.1
325
+ python-multipart==0.0.18
326
+ python-pptx==0.6.23
327
+ python-slugify==8.0.4
328
+ pytorch-pretrained-bert==0.6.2
329
+ pytz==2025.2
330
+ pyvista==0.44.2
331
+ PyWavelets==1.4.1
332
+ PyYAML==6.0.3
333
+ pyzstd==0.18.0
334
+ quantile-python==1.1
335
+ rapidfuzz==3.8.1
336
+ rapidocr-onnxruntime==1.3.8
337
+ ray==2.10.0
338
+ rdkit==2024.3.5
339
+ redis==6.1.1
340
+ referencing==0.35.1
341
+ regex==2022.4.24
342
+ requests==2.32.4
343
+ requests-oauthlib==1.3.0
344
+ responses==0.16.0
345
+ rich==13.7.1
346
+ rouge-score==0.1.2
347
+ rpds-py==0.20.1
348
+ rq==2.3.3
349
+ rsa==4.7.2
350
+ ruff==0.4.2
351
+ rustworkx==0.15.1
352
+ s3transfer==0.11.3
353
+ sacrebleu==2.1.0
354
+ sacremoses==0.0.46
355
+ safetensors==0.4.3
356
+ scipy==1.10.1
357
+ scooby==0.10.1
358
+ seaborn==0.13.2
359
+ semantic-version==2.10.0
360
+ sentence-transformers==2.2.2
361
+ sentencepiece==0.1.91
362
+ sentry-sdk==2.39.0
363
+ session_info==1.0.1
364
+ sgmllib3k==1.0.0
365
+ shapely==2.0.4
366
+ shellingham==1.5.4
367
+ shortuuid==1.0.13
368
+ six==1.17.0
369
+ smart-open==6.4.0
370
+ smmap==5.0.1
371
+ sniffio==1.3.1
372
+ snowballstemmer==2.2.0
373
+ sobol-seq==0.2.0
374
+ socksio==1.0.0
375
+ soupsieve==2.5
376
+ spacy-legacy==3.0.12
377
+ spacy-loggers==1.0.5
378
+ Sphinx==4.3.1
379
+ sphinxcontrib-applehelp==1.0.2
380
+ sphinxcontrib-devhelp==1.0.2
381
+ sphinxcontrib-htmlhelp==2.0.0
382
+ sphinxcontrib-jsmath==1.0.1
383
+ sphinxcontrib-qthelp==1.0.3
384
+ sphinxcontrib-serializinghtml==1.1.5
385
+ SQLAlchemy==2.0.19
386
+ sqlparse==0.4.2
387
+ sse-starlette==1.8.2
388
+ starlette==0.44.0
389
+ statsmodels==0.14.1
390
+ stdlib-list==0.10.0
391
+ streamlit==1.30.0
392
+ streamlit-aggrid==0.3.4.post3
393
+ streamlit-antd-components==0.3.1
394
+ streamlit-chatbox==1.1.11
395
+ streamlit-feedback==0.1.3
396
+ streamlit-modal==0.1.0
397
+ streamlit-option-menu==0.3.12
398
+ strsimpy==0.2.1
399
+ svgwrite==1.4.3
400
+ tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
401
+ tabulate==0.8.9
402
+ tenacity==8.2.3
403
+ tensorboard-plugin-wit==1.8.0
404
+ tensorboardX==2.4.1
405
+ text-unidecode==1.3
406
+ texttable==1.7.0
407
+ thefuzz==0.22.1
408
+ threadpoolctl==3.5.0
409
+ tifffile==2023.7.10
410
+ tiktoken==0.7.0
411
+ timm==0.9.16
412
+ tk==0.1.0
413
+ tokenizers==0.20.3
414
+ toml==0.10.2
415
+ tomlkit==0.12.0
416
+ toolz==0.12.1
417
+ torch-geometric==2.6.1
418
+ torchaudio==2.1.2+cu118
419
+ torchtext==0.4.0
420
+ tornado==6.4
421
+ tqdm==4.67.1
422
+ transformer-lens==2.16.1
423
+ transformers==4.46.3
424
+ transformers-stream-generator==0.0.5
425
+ typed-argument-parser==1.10.1
426
+ typeguard==4.4.0
427
+ typer==0.9.4
428
+ types-requests==2.31.0.20240406
429
+ typing-inspect==0.9.0
430
+ typing-utils==0.1.0
431
+ typing_extensions==4.13.2
432
+ tzdata==2024.1
433
+ tzlocal==5.2
434
+ umap-learn==0.5.7
435
+ Unidecode==1.3.2
436
+ unittest-xml-reporting==3.2.0
437
+ unstructured==0.11.0
438
+ unstructured-client==0.22.0
439
+ unstructured-inference==0.7.15
440
+ unstructured.pytesseract==0.3.12
441
+ urllib3==2.2.3
442
+ uvicorn==0.29.0
443
+ uvloop==0.21.0
444
+ validators==0.28.1
445
+ vllm==0.2.7
446
+ vtk==9.3.1
447
+ wandb==0.22.0
448
+ watchdog==3.0.0
449
+ watchfiles==0.21.0
450
+ wavedrom==2.0.3.post3
451
+ weasel==0.3.4
452
+ websocket-client==1.8.0
453
+ websockets==13.1
454
+ Werkzeug==2.0.2
455
+ word2number==1.1
456
+ xlrd==2.0.1
457
+ XlsxWriter==3.0.2
458
+ xxhash==2.0.2
459
+ Yapsy==1.12.2
460
+ yarl==1.15.2
461
+ youtube-search==2.1.2
462
+ zipp==3.20.2
463
+ zope.event==4.5.0
464
+ zstandard==0.23.0
configs/029_test/pip-freeze.txt ADDED
@@ -0,0 +1,464 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ absl-py==2.3.1
2
+ accelerate==0.24.1
3
+ aiofiles==23.2.1
4
+ aiohappyeyeballs==2.4.4
5
+ aiohttp==3.10.11
6
+ aioprometheus==23.12.0
7
+ aiosignal==1.3.1
8
+ alabaster==0.7.12
9
+ allennlp==0.8.4
10
+ altair==5.3.0
11
+ annotated-types==0.6.0
12
+ anyio==3.7.1
13
+ appdirs==1.4.4
14
+ APScheduler==3.11.2
15
+ arxiv==2.1.0
16
+ astunparse==1.6.3
17
+ async-timeout==4.0.3
18
+ attrs==25.3.0
19
+ autograd==1.7.0
20
+ autoray==0.6.12
21
+ awscli==1.32.93
22
+ azure-core==1.33.0
23
+ azure-identity==1.21.0
24
+ azure-storage-blob==12.26.0
25
+ Babel==2.9.1
26
+ backoff==2.2.1
27
+ backports.zoneinfo==0.2.1
28
+ bcrypt==4.1.2
29
+ beartype==0.14.1
30
+ better-abc==0.0.3
31
+ biopython==1.83
32
+ bitarray==2.5.1
33
+ bitsandbytes==0.43.1
34
+ blessed==1.20.0
35
+ blis==0.7.11
36
+ boto3==1.36.0
37
+ botocore==1.36.26
38
+ botorch==0.8.5
39
+ bpl==0.1.1
40
+ Brotli==1.1.0
41
+ bs4==0.0.2
42
+ cachetools==4.2.4
43
+ certifi==2026.2.25
44
+ cffi==1.15.0
45
+ cftime==1.6.4.post1
46
+ chaospy==3.3.9
47
+ charset-normalizer==3.4.7
48
+ chex==0.1.7
49
+ chroma-hnswlib==0.7.3
50
+ chromadb==0.4.15
51
+ click==8.1.7
52
+ cloudpathlib==0.16.0
53
+ cobra==0.29.1
54
+ cohere==5.3.3
55
+ coloredlogs==15.0.1
56
+ confection==0.1.4
57
+ ConfigArgParse==1.5.3
58
+ conllu==0.11
59
+ contourpy==1.1.1
60
+ coverage==7.6.1
61
+ cpm-kernels==1.0.11
62
+ cryptography==42.0.5
63
+ cvxopt==1.3.2
64
+ cycler==0.12.1
65
+ cymem==2.0.8
66
+ Cython==0.29.30
67
+ dataclasses==0.6
68
+ dataclasses-json==0.6.4
69
+ datasets==2.19.0
70
+ deepdiff==7.0.1
71
+ Deprecated==1.2.14
72
+ deprecation==2.1.0
73
+ dill==0.3.8
74
+ diskcache==5.6.3
75
+ distro==1.9.0
76
+ dm-tree==0.1.8
77
+ dnspython==2.6.1
78
+ docstring_parser==0.17.0
79
+ docutils==0.15.2
80
+ dotenv==0.9.9
81
+ duckduckgo-search==3.9.9
82
+ editdistance==0.6.0
83
+ effdet==0.4.1
84
+ einops==0.7.0
85
+ email-validator==2.3.0
86
+ emoji==2.11.1
87
+ equinox==0.10.4
88
+ et-xmlfile==1.1.0
89
+ eval_type_backport==0.2.2
90
+ exceptiongroup==1.2.1
91
+ fairseq==0.10.2
92
+ faiss-cpu==1.7.4
93
+ faiss-gpu==1.7.2
94
+ fancy-einsum==0.0.3
95
+ fastapi==0.115.14
96
+ fastapi-sso==0.16.0
97
+ fastavro==1.9.4
98
+ fastuuid==0.13.5
99
+ fbpca==1.0
100
+ feedparser==6.0.10
101
+ ffmpy==0.3.2
102
+ filetype==1.2.0
103
+ finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
104
+ flaky==3.7.0
105
+ Flask-Cors==3.0.10
106
+ fonttools==4.57.0
107
+ frozenlist==1.4.1
108
+ fschat==0.2.35
109
+ fsspec==2025.3.0
110
+ ftfy==6.0.3
111
+ future==0.18.2
112
+ fuzzywuzzy==0.18.0
113
+ gdown==5.2.0
114
+ geosketch==1.3
115
+ geotorch==0.3.0
116
+ get-annotations==0.1.2
117
+ gevent==21.12.0
118
+ gitdb==4.0.11
119
+ GitPython==3.1.43
120
+ google-pasta==0.2.0
121
+ googleapis-common-protos==1.63.0
122
+ gpustat==1.1.1
123
+ gpytorch==1.10
124
+ gradio_client==0.16.0
125
+ graphlib_backport==1.1.0
126
+ greenlet==1.1.2
127
+ gunicorn==23.0.0
128
+ h11==0.14.0
129
+ h2==4.1.0
130
+ hf-xet==1.2.0
131
+ hf_transfer==0.1.9
132
+ hpack==4.0.0
133
+ httpcore==1.0.5
134
+ httptools==0.6.1
135
+ httpx==0.28.1
136
+ httpx-sse==0.4.0
137
+ huggingface_hub==0.36.1
138
+ humanfriendly==10.0
139
+ hyperframe==6.0.1
140
+ icetk==0.0.4
141
+ idna==3.10
142
+ igraph==0.11.8
143
+ imageio==2.35.1
144
+ imagesize==1.3.0
145
+ imgaug==0.4.0
146
+ importlib-metadata==7.0.0
147
+ importlib_resources==6.4.5
148
+ inequalipy==1.0.5
149
+ inflate64==1.0.0
150
+ iniconfig==1.1.1
151
+ inquirerpy==0.3.4
152
+ iopath==0.1.10
153
+ isodate==0.7.2
154
+ itsdangerous==2.0.1
155
+ jax==0.4.13
156
+ jaxlib==0.4.13
157
+ jaxtyping==0.2.19
158
+ Jinja2==3.1.6
159
+ jiter==0.9.1
160
+ jmespath==0.10.0
161
+ joblib==1.4.2
162
+ jsonnet==0.17.0
163
+ jsonpatch==1.33
164
+ jsonpath-python==1.0.6
165
+ jsonpickle==2.0.0
166
+ jsonschema==4.23.0
167
+ jsonschema-specifications==2023.12.1
168
+ kaggle==1.7.4.5
169
+ Keras-Preprocessing==1.1.2
170
+ kiwisolver==1.4.7
171
+ kubernetes==29.0.0
172
+ langchain==0.1.16
173
+ langchain-community==0.0.34
174
+ langchain-core==0.1.46
175
+ langchain-experimental==0.0.57
176
+ langchain-text-splitters==0.0.1
177
+ langcodes==3.4.0
178
+ langdetect==1.0.9
179
+ langsmith==0.1.51
180
+ language_data==1.2.0
181
+ layoutparser==0.3.4
182
+ lazy_loader==0.4
183
+ leidenalg==0.10.2
184
+ Levenshtein==0.25.1
185
+ linear-operator==0.4.0
186
+ litellm==1.77.4
187
+ litellm-enterprise==0.1.20
188
+ litellm-proxy-extras==0.2.19
189
+ llama-index==0.9.35
190
+ llvmlite==0.41.1
191
+ lmdb==1.7.3
192
+ lxml==5.2.1
193
+ madoka==0.7.1
194
+ marisa-trie==1.1.0
195
+ Markdown==3.3.6
196
+ markdown-it-py==3.0.0
197
+ markdown2==2.4.13
198
+ markdownify==0.11.6
199
+ MarkupSafe==2.1.5
200
+ marshmallow==3.21.1
201
+ matplotlib==3.7.5
202
+ mdtex2html==1.3.0
203
+ mdurl==0.1.2
204
+ metaphor-python==0.1.23
205
+ ml-dtypes==0.2.0
206
+ monotonic==1.6
207
+ mrcfile==1.5.4
208
+ msal==1.36.0
209
+ msal-extensions==1.3.0
210
+ msg-parser==1.2.0
211
+ msgpack==1.0.8
212
+ msgpack-numpy==0.4.3.2
213
+ multidict==6.0.5
214
+ multipledispatch==1.0.0
215
+ multiprocess==0.70.16
216
+ multivolumefile==0.2.3
217
+ murmurhash==1.0.10
218
+ mypy-extensions==1.0.0
219
+ narwhals==1.42.1
220
+ natsort==8.4.0
221
+ nest-asyncio==1.6.0
222
+ netCDF4==1.7.2
223
+ neuroHarmonize==2.4.5
224
+ nh3==0.2.17
225
+ ninja==1.11.1.1
226
+ nltk==3.8.1
227
+ numba==0.58.1
228
+ numexpr==2.8.6
229
+ numpoly==1.0.6
230
+ numpy==1.24.4
231
+ numpydoc==1.1.0
232
+ nvidia-ml-py==12.535.133
233
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234
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235
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236
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237
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238
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252
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253
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260
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261
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268
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436
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437
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configs/030_test/editable.txt ADDED
File without changes
configs/030_test/env.yml ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ name: 030_test
2
+ channels:
3
+ - conda-forge
4
+ - defaults
5
+ dependencies:
6
+ - _libgcc_mutex=0.1
7
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8
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9
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11
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13
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14
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15
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16
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17
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18
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19
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20
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25
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28
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33
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34
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35
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36
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37
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43
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45
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49
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50
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51
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52
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53
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54
+ - urllib3==2.2.3
55
+ prefix: /home/lily/yz979/anaconda3/envs/030_test
configs/030_test/explicit.txt ADDED
@@ -0,0 +1,31 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # This file may be used to create an environment using:
2
+ # $ conda create --name <env> --file <this file>
3
+ # platform: linux-64
4
+ @EXPLICIT
5
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15
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configs/030_test/meta.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ {
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+ "editable_count": 0,
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+ "source_prefix": "/home/lily/yz979/anaconda3/envs/030_test",
7
+ "exported_at": "2026-05-17T04:03:40Z"
8
+ }
configs/030_test/pip-clean.txt ADDED
@@ -0,0 +1,455 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
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73
+ dnspython==2.6.1
74
+ docstring_parser==0.17.0
75
+ docutils==0.15.2
76
+ dotenv==0.9.9
77
+ duckduckgo-search==3.9.9
78
+ editdistance==0.6.0
79
+ effdet==0.4.1
80
+ einops==0.7.0
81
+ email-validator==2.3.0
82
+ emoji==2.11.1
83
+ equinox==0.10.4
84
+ et-xmlfile==1.1.0
85
+ eval_type_backport==0.2.2
86
+ exceptiongroup==1.2.1
87
+ fairseq==0.10.2
88
+ faiss-cpu==1.7.4
89
+ faiss-gpu==1.7.2
90
+ fancy-einsum==0.0.3
91
+ fastapi==0.115.14
92
+ fastapi-sso==0.16.0
93
+ fastavro==1.9.4
94
+ fastuuid==0.13.5
95
+ fbpca==1.0
96
+ feedparser==6.0.10
97
+ ffmpy==0.3.2
98
+ filelock==3.13.1
99
+ filetype==1.2.0
100
+ finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
101
+ flaky==3.7.0
102
+ Flask-Cors==3.0.10
103
+ frozenlist==1.4.1
104
+ fschat==0.2.35
105
+ fsspec==2025.3.0
106
+ ftfy==6.0.3
107
+ future==0.18.2
108
+ fuzzywuzzy==0.18.0
109
+ gdown==5.2.0
110
+ geosketch==1.3
111
+ geotorch==0.3.0
112
+ get-annotations==0.1.2
113
+ gevent==21.12.0
114
+ gitdb==4.0.11
115
+ GitPython==3.1.43
116
+ google-pasta==0.2.0
117
+ googleapis-common-protos==1.63.0
118
+ gpustat==1.1.1
119
+ gpytorch==1.10
120
+ gradio_client==0.16.0
121
+ graphlib_backport==1.1.0
122
+ greenlet==1.1.2
123
+ gunicorn==23.0.0
124
+ h11==0.14.0
125
+ h2==4.1.0
126
+ hf-xet==1.2.0
127
+ hf_transfer==0.1.9
128
+ hpack==4.0.0
129
+ httpcore==1.0.5
130
+ httptools==0.6.1
131
+ httpx==0.28.1
132
+ httpx-sse==0.4.0
133
+ huggingface_hub==0.36.1
134
+ humanfriendly==10.0
135
+ hyperframe==6.0.1
136
+ icetk==0.0.4
137
+ idna==3.10
138
+ igraph==0.11.8
139
+ imageio==2.35.1
140
+ imagesize==1.3.0
141
+ imgaug==0.4.0
142
+ importlib-metadata==7.0.0
143
+ importlib_resources==6.4.5
144
+ inequalipy==1.0.5
145
+ iniconfig==1.1.1
146
+ inquirerpy==0.3.4
147
+ iopath==0.1.10
148
+ isodate==0.7.2
149
+ itsdangerous==2.0.1
150
+ jax==0.4.13
151
+ jaxlib==0.4.13
152
+ jaxtyping==0.2.19
153
+ Jinja2==3.1.6
154
+ jiter==0.9.1
155
+ jmespath==0.10.0
156
+ joblib==1.4.2
157
+ jsonnet==0.17.0
158
+ jsonpatch==1.33
159
+ jsonpath-python==1.0.6
160
+ jsonpickle==2.0.0
161
+ jsonschema==4.23.0
162
+ jsonschema-specifications==2023.12.1
163
+ kaggle==1.7.4.5
164
+ Keras-Preprocessing==1.1.2
165
+ kubernetes==29.0.0
166
+ langchain==0.1.16
167
+ langchain-community==0.0.34
168
+ langchain-core==0.1.46
169
+ langchain-experimental==0.0.57
170
+ langchain-text-splitters==0.0.1
171
+ langcodes==3.4.0
172
+ langdetect==1.0.9
173
+ langsmith==0.1.51
174
+ language_data==1.2.0
175
+ layoutparser==0.3.4
176
+ lazy_loader==0.4
177
+ leidenalg==0.10.2
178
+ Levenshtein==0.25.1
179
+ linear-operator==0.4.0
180
+ litellm==1.77.4
181
+ litellm-enterprise==0.1.20
182
+ litellm-proxy-extras==0.2.19
183
+ llama-index==0.9.35
184
+ llvmlite==0.41.1
185
+ lmdb==1.7.3
186
+ lxml==5.2.1
187
+ madoka==0.7.1
188
+ marisa-trie==1.1.0
189
+ Markdown==3.3.6
190
+ markdown-it-py==3.0.0
191
+ markdown2==2.4.13
192
+ markdownify==0.11.6
193
+ MarkupSafe==2.1.5
194
+ marshmallow==3.21.1
195
+ mdtex2html==1.3.0
196
+ mdurl==0.1.2
197
+ metaphor-python==0.1.23
198
+ ml-dtypes==0.2.0
199
+ monotonic==1.6
200
+ mpmath==1.3.0
201
+ mrcfile==1.5.4
202
+ msal==1.36.0
203
+ msal-extensions==1.3.0
204
+ msg-parser==1.2.0
205
+ msgpack==1.0.8
206
+ msgpack-numpy==0.4.3.2
207
+ multidict==6.0.5
208
+ multipledispatch==1.0.0
209
+ multiprocess==0.70.16
210
+ murmurhash==1.0.10
211
+ mypy-extensions==1.0.0
212
+ narwhals==1.42.1
213
+ natsort==8.4.0
214
+ nest-asyncio==1.6.0
215
+ netCDF4==1.7.2
216
+ networkx==3.0
217
+ neuroHarmonize==2.4.5
218
+ nh3==0.2.17
219
+ ninja==1.11.1.1
220
+ nltk==3.8.1
221
+ numba==0.58.1
222
+ numexpr==2.8.6
223
+ numpoly==1.0.6
224
+ numpy==1.24.4
225
+ numpydoc==1.1.0
226
+ nvidia-ml-py==12.535.133
227
+ nvitop==1.3.2
228
+ oauthlib==3.2.2
229
+ onnx==1.16.0
230
+ onnxruntime==1.15.1
231
+ openai==1.101.0
232
+ openpyxl==3.0.9
233
+ opentelemetry-api==1.24.0
234
+ opentelemetry-exporter-otlp-proto-common==1.24.0
235
+ opentelemetry-exporter-otlp-proto-grpc==1.24.0
236
+ opentelemetry-proto==1.24.0
237
+ opentelemetry-sdk==1.24.0
238
+ opentelemetry-semantic-conventions==0.45b0
239
+ opt-einsum==3.3.0
240
+ optax==0.1.5
241
+ ordered-set==4.1.0
242
+ orjson==3.10.1
243
+ overrides==7.7.0
244
+ packaging==26.2
245
+ pandas==2.0.3
246
+ pandas-stubs==1.2.0.45
247
+ parsimonious==0.8.1
248
+ pathlib==1.0.1
249
+ patsy==1.0.1
250
+ pdf2image==1.17.0
251
+ pfzy==0.3.4
252
+ PICOS==2.6.1
253
+ pikepdf==8.4.1
254
+ pip-search==0.0.12
255
+ pkgutil_resolve_name==1.3.10
256
+ plac==0.9.6
257
+ plotly==6.3.0
258
+ pluggy==1.5.0
259
+ ply==3.11
260
+ pondpond==1.4.1
261
+ pooch==1.8.2
262
+ portalocker==2.4.0
263
+ posthog==3.5.0
264
+ preshed==3.0.9
265
+ prettytable==3.11.0
266
+ primer3-py==2.2.0
267
+ prompt-toolkit==3.0.43
268
+ propcache==0.2.0
269
+ psutil==7.2.2
270
+ PuLP==3.1.1
271
+ pulsar-client==3.5.0
272
+ pyarrow==17.0.0
273
+ pyarrow-hotfix==0.6
274
+ pyclipper==1.3.0.post5
275
+ pycocotools==2.0.7
276
+ pycparser==2.21
277
+ pydantic==2.10.6
278
+ pydantic_core==2.27.2
279
+ pydeck==0.9.0b1
280
+ pyDOE2==1.3.0
281
+ pydub==0.25.1
282
+ pyfaidx==0.9.0.1
283
+ Pygments==2.19.2
284
+ PyJWT==2.8.0
285
+ pymodbus==3.6.9
286
+ PyMuPDF==1.23.16
287
+ PyMuPDFb==1.23.9
288
+ PyNaCl==1.6.2
289
+ pynndescent==0.5.13
290
+ Pyomo==6.8.2
291
+ pyOpenSSL==24.1.0
292
+ pypandoc==1.13
293
+ pypdf==4.2.0
294
+ pypdfium2==4.29.0
295
+ PyPika==0.48.9
296
+ PyQt5==5.15.7
297
+ PyQt5-Qt5==5.15.17
298
+ PyQt5_sip==12.15.0
299
+ pyro-api==0.1.2
300
+ pyro-ppl==1.9.1
301
+ pysam==0.23.3
302
+ PySocks==1.7.1
303
+ pysqlite3-binary==0.5.2.post3
304
+ pystan==2.19.1.1
305
+ pytesseract==0.3.10
306
+ pytest-cov==5.0.0
307
+ python-dateutil==2.9.0.post0
308
+ python-decouple==3.8
309
+ python-docx==1.1.0
310
+ python-dotenv==1.0.1
311
+ python-iso639==2024.4.27
312
+ python-Levenshtein==0.25.1
313
+ python-multipart==0.0.18
314
+ python-pptx==0.6.23
315
+ python-slugify==8.0.4
316
+ pytorch-pretrained-bert==0.6.2
317
+ pytz==2025.2
318
+ pyvista==0.44.2
319
+ PyWavelets==1.4.1
320
+ PyYAML==6.0.3
321
+ quantile-python==1.1
322
+ rapidfuzz==3.8.1
323
+ rapidocr-onnxruntime==1.3.8
324
+ ray==2.10.0
325
+ rdkit==2024.3.5
326
+ redis==6.1.1
327
+ referencing==0.35.1
328
+ regex==2022.4.24
329
+ requests==2.32.4
330
+ requests-oauthlib==1.3.0
331
+ responses==0.16.0
332
+ rich==13.7.1
333
+ rouge-score==0.1.2
334
+ rpds-py==0.20.1
335
+ rq==2.3.3
336
+ rsa==4.7.2
337
+ ruff==0.4.2
338
+ rustworkx==0.15.1
339
+ s3transfer==0.11.3
340
+ sacrebleu==2.1.0
341
+ sacremoses==0.0.46
342
+ safetensors==0.4.3
343
+ scipy==1.10.1
344
+ scooby==0.10.1
345
+ seaborn==0.13.2
346
+ semantic-version==2.10.0
347
+ sentence-transformers==2.2.2
348
+ sentencepiece==0.1.91
349
+ sentry-sdk==2.39.0
350
+ session_info==1.0.1
351
+ sgmllib3k==1.0.0
352
+ shapely==2.0.4
353
+ shellingham==1.5.4
354
+ shortuuid==1.0.13
355
+ six==1.17.0
356
+ smart-open==6.4.0
357
+ smmap==5.0.1
358
+ sniffio==1.3.1
359
+ snowballstemmer==2.2.0
360
+ sobol-seq==0.2.0
361
+ socksio==1.0.0
362
+ soupsieve==2.5
363
+ spacy-legacy==3.0.12
364
+ spacy-loggers==1.0.5
365
+ Sphinx==4.3.1
366
+ sphinxcontrib-applehelp==1.0.2
367
+ sphinxcontrib-devhelp==1.0.2
368
+ sphinxcontrib-htmlhelp==2.0.0
369
+ sphinxcontrib-jsmath==1.0.1
370
+ sphinxcontrib-qthelp==1.0.3
371
+ sphinxcontrib-serializinghtml==1.1.5
372
+ SQLAlchemy==2.0.19
373
+ sqlparse==0.4.2
374
+ sse-starlette==1.8.2
375
+ starlette==0.44.0
376
+ statsmodels==0.14.1
377
+ stdlib-list==0.10.0
378
+ streamlit==1.30.0
379
+ streamlit-aggrid==0.3.4.post3
380
+ streamlit-antd-components==0.3.1
381
+ streamlit-chatbox==1.1.11
382
+ streamlit-feedback==0.1.3
383
+ streamlit-modal==0.1.0
384
+ streamlit-option-menu==0.3.12
385
+ strsimpy==0.2.1
386
+ svgwrite==1.4.3
387
+ sympy==1.13.3
388
+ tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
389
+ tabulate==0.8.9
390
+ tenacity==8.2.3
391
+ tensorboard-plugin-wit==1.8.0
392
+ tensorboardX==2.4.1
393
+ text-unidecode==1.3
394
+ texttable==1.7.0
395
+ thefuzz==0.22.1
396
+ threadpoolctl==3.5.0
397
+ tifffile==2023.7.10
398
+ tiktoken==0.7.0
399
+ timm==0.9.16
400
+ tk==0.1.0
401
+ tokenizers==0.20.3
402
+ toml==0.10.2
403
+ tomlkit==0.12.0
404
+ toolz==0.12.1
405
+ torch==2.4.1+cpu
406
+ torch-geometric==2.6.1
407
+ torch_scatter==2.1.2+pt24cpu
408
+ torch_sparse==0.6.18+pt24cpu
409
+ torchaudio==2.1.2+cu118
410
+ torchtext==0.4.0
411
+ tornado==6.4
412
+ tqdm==4.67.1
413
+ transformer-lens==2.16.1
414
+ transformers==4.46.3
415
+ transformers-stream-generator==0.0.5
416
+ typed-argument-parser==1.10.1
417
+ typeguard==4.4.0
418
+ typer==0.9.4
419
+ types-requests==2.31.0.20240406
420
+ typing-inspect==0.9.0
421
+ typing-utils==0.1.0
422
+ typing_extensions==4.13.2
423
+ tzdata==2024.1
424
+ tzlocal==5.2
425
+ umap-learn==0.5.7
426
+ Unidecode==1.3.2
427
+ unittest-xml-reporting==3.2.0
428
+ unstructured==0.11.0
429
+ unstructured-client==0.22.0
430
+ unstructured-inference==0.7.15
431
+ unstructured.pytesseract==0.3.12
432
+ urllib3==2.2.3
433
+ uvicorn==0.29.0
434
+ uvloop==0.21.0
435
+ validators==0.28.1
436
+ vllm==0.2.7
437
+ vtk==9.3.1
438
+ wandb==0.22.0
439
+ watchdog==3.0.0
440
+ watchfiles==0.21.0
441
+ wavedrom==2.0.3.post3
442
+ weasel==0.3.4
443
+ websocket-client==1.8.0
444
+ websockets==13.1
445
+ Werkzeug==2.0.2
446
+ word2number==1.1
447
+ xlrd==2.0.1
448
+ XlsxWriter==3.0.2
449
+ xxhash==2.0.2
450
+ Yapsy==1.12.2
451
+ yarl==1.15.2
452
+ youtube-search==2.1.2
453
+ zipp==3.20.2
454
+ zope.event==4.5.0
455
+ zstandard==0.23.0
configs/030_test/pip-freeze.txt ADDED
@@ -0,0 +1,455 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ absl-py==2.3.1
2
+ accelerate==0.24.1
3
+ aiofiles==23.2.1
4
+ aiohappyeyeballs==2.4.4
5
+ aiohttp==3.10.11
6
+ aioprometheus==23.12.0
7
+ aiosignal==1.3.1
8
+ alabaster==0.7.12
9
+ allennlp==0.8.4
10
+ altair==5.3.0
11
+ annotated-types==0.6.0
12
+ anyio==3.7.1
13
+ APScheduler==3.11.2
14
+ arxiv==2.1.0
15
+ astunparse==1.6.3
16
+ async-timeout==4.0.3
17
+ attrs==25.3.0
18
+ autograd==1.7.0
19
+ autoray==0.6.12
20
+ awscli==1.32.93
21
+ azure-core==1.33.0
22
+ azure-identity==1.21.0
23
+ azure-storage-blob==12.26.0
24
+ Babel==2.9.1
25
+ backoff==2.2.1
26
+ backports.zoneinfo==0.2.1
27
+ bcrypt==4.1.2
28
+ beartype==0.14.1
29
+ better-abc==0.0.3
30
+ biopython==1.83
31
+ bitarray==2.5.1
32
+ bitsandbytes==0.43.1
33
+ blessed==1.20.0
34
+ blis==0.7.11
35
+ boto3==1.36.0
36
+ botocore==1.36.26
37
+ botorch==0.8.5
38
+ bpl==0.1.1
39
+ Brotli==1.1.0
40
+ bs4==0.0.2
41
+ cachetools==4.2.4
42
+ certifi==2026.4.22
43
+ cffi==1.15.0
44
+ cftime==1.6.4.post1
45
+ chaospy==3.3.9
46
+ charset-normalizer==3.4.7
47
+ chex==0.1.7
48
+ chroma-hnswlib==0.7.3
49
+ chromadb==0.4.15
50
+ click==8.1.7
51
+ cloudpathlib==0.16.0
52
+ cobra==0.29.1
53
+ cohere==5.3.3
54
+ coloredlogs==15.0.1
55
+ confection==0.1.4
56
+ ConfigArgParse==1.5.3
57
+ conllu==0.11
58
+ coverage==7.6.1
59
+ cpm-kernels==1.0.11
60
+ cryptography==42.0.5
61
+ cvxopt==1.3.2
62
+ cymem==2.0.8
63
+ Cython==0.29.30
64
+ dataclasses==0.6
65
+ dataclasses-json==0.6.4
66
+ datasets==2.19.0
67
+ deepdiff==7.0.1
68
+ Deprecated==1.2.14
69
+ deprecation==2.1.0
70
+ dill==0.3.8
71
+ distro==1.9.0
72
+ dm-tree==0.1.8
73
+ dnspython==2.6.1
74
+ docstring_parser==0.17.0
75
+ docutils==0.15.2
76
+ dotenv==0.9.9
77
+ duckduckgo-search==3.9.9
78
+ editdistance==0.6.0
79
+ effdet==0.4.1
80
+ einops==0.7.0
81
+ email-validator==2.3.0
82
+ emoji==2.11.1
83
+ equinox==0.10.4
84
+ et-xmlfile==1.1.0
85
+ eval_type_backport==0.2.2
86
+ exceptiongroup==1.2.1
87
+ fairseq==0.10.2
88
+ faiss-cpu==1.7.4
89
+ faiss-gpu==1.7.2
90
+ fancy-einsum==0.0.3
91
+ fastapi==0.115.14
92
+ fastapi-sso==0.16.0
93
+ fastavro==1.9.4
94
+ fastuuid==0.13.5
95
+ fbpca==1.0
96
+ feedparser==6.0.10
97
+ ffmpy==0.3.2
98
+ filelock==3.13.1
99
+ filetype==1.2.0
100
+ finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
101
+ flaky==3.7.0
102
+ Flask-Cors==3.0.10
103
+ frozenlist==1.4.1
104
+ fschat==0.2.35
105
+ fsspec==2025.3.0
106
+ ftfy==6.0.3
107
+ future==0.18.2
108
+ fuzzywuzzy==0.18.0
109
+ gdown==5.2.0
110
+ geosketch==1.3
111
+ geotorch==0.3.0
112
+ get-annotations==0.1.2
113
+ gevent==21.12.0
114
+ gitdb==4.0.11
115
+ GitPython==3.1.43
116
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117
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118
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119
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120
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125
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126
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127
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133
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134
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135
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136
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137
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138
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139
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140
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141
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142
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143
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144
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146
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148
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149
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150
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151
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152
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153
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154
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155
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157
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158
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161
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162
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163
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164
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165
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166
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167
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168
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169
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170
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171
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172
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173
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174
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175
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176
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177
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178
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179
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180
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181
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182
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183
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184
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185
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186
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187
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188
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189
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190
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191
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192
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193
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194
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195
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196
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197
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198
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199
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200
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201
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202
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203
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204
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205
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206
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207
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208
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209
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210
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211
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212
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213
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214
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215
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216
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217
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218
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219
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220
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221
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222
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223
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224
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225
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226
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227
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228
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229
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230
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231
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232
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233
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234
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235
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236
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237
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238
+ opentelemetry-semantic-conventions==0.45b0
239
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240
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241
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242
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243
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244
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245
+ pandas==2.0.3
246
+ pandas-stubs==1.2.0.45
247
+ parsimonious==0.8.1
248
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249
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250
+ pdf2image==1.17.0
251
+ pfzy==0.3.4
252
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253
+ pikepdf==8.4.1
254
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255
+ pkgutil_resolve_name==1.3.10
256
+ plac==0.9.6
257
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258
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259
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260
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261
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262
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263
+ posthog==3.5.0
264
+ preshed==3.0.9
265
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266
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267
+ prompt-toolkit==3.0.43
268
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269
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270
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271
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272
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273
+ pyarrow-hotfix==0.6
274
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275
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276
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277
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278
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279
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280
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281
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282
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283
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284
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285
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286
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287
+ PyMuPDFb==1.23.9
288
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289
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290
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291
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292
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293
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294
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295
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296
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297
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298
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299
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300
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301
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302
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303
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304
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305
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306
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307
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308
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309
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310
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311
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312
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313
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314
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315
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316
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317
+ pytz==2025.2
318
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319
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320
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321
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322
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323
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324
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325
+ rdkit==2024.3.5
326
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327
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328
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329
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330
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331
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332
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333
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334
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335
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336
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337
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338
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339
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340
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341
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342
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343
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344
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345
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346
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347
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348
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349
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350
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351
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352
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353
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354
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355
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356
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357
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358
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359
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360
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361
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362
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363
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364
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365
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366
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367
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368
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369
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370
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371
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372
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373
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374
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375
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376
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377
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378
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379
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380
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381
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382
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383
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384
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385
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386
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387
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388
+ tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
389
+ tabulate==0.8.9
390
+ tenacity==8.2.3
391
+ tensorboard-plugin-wit==1.8.0
392
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393
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394
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395
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396
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397
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398
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399
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400
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401
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402
+ toml==0.10.2
403
+ tomlkit==0.12.0
404
+ toolz==0.12.1
405
+ torch==2.4.1+cpu
406
+ torch-geometric==2.6.1
407
+ torch_scatter==2.1.2+pt24cpu
408
+ torch_sparse==0.6.18+pt24cpu
409
+ torchaudio==2.1.2+cu118
410
+ torchtext==0.4.0
411
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412
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413
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414
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415
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416
+ typed-argument-parser==1.10.1
417
+ typeguard==4.4.0
418
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419
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420
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421
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422
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423
+ tzdata==2024.1
424
+ tzlocal==5.2
425
+ umap-learn==0.5.7
426
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427
+ unittest-xml-reporting==3.2.0
428
+ unstructured==0.11.0
429
+ unstructured-client==0.22.0
430
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431
+ unstructured.pytesseract==0.3.12
432
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433
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434
+ uvloop==0.21.0
435
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436
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437
+ vtk==9.3.1
438
+ wandb==0.22.0
439
+ watchdog==3.0.0
440
+ watchfiles==0.21.0
441
+ wavedrom==2.0.3.post3
442
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443
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444
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445
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446
+ word2number==1.1
447
+ xlrd==2.0.1
448
+ XlsxWriter==3.0.2
449
+ xxhash==2.0.2
450
+ Yapsy==1.12.2
451
+ yarl==1.15.2
452
+ youtube-search==2.1.2
453
+ zipp==3.20.2
454
+ zope.event==4.5.0
455
+ zstandard==0.23.0
configs/040_test/editable.txt ADDED
File without changes
configs/040_test/env.yml ADDED
@@ -0,0 +1,52 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ name: 040_test
2
+ channels:
3
+ - conda-forge
4
+ - defaults
5
+ dependencies:
6
+ - _libgcc_mutex=0.1
7
+ - _openmp_mutex=4.5
8
+ - bzip2=1.0.8
9
+ - ca-certificates=2025.8.3
10
+ - ld_impl_linux-64=2.44
11
+ - libffi=3.4.6
12
+ - libgcc=15.1.0
13
+ - libgcc-ng=15.1.0
14
+ - libgomp=15.1.0
15
+ - liblzma=5.8.1
16
+ - liblzma-devel=5.8.1
17
+ - libnsl=2.0.1
18
+ - libsqlite=3.50.4
19
+ - libuuid=2.41.2
20
+ - libxcrypt=4.4.36
21
+ - libzlib=1.3.1
22
+ - ncurses=6.5
23
+ - openssl=3.5.3
24
+ - pip=22.1.2
25
+ - python=3.8.20
26
+ - readline=8.2
27
+ - setuptools=70.3.0
28
+ - tk=8.6.13
29
+ - wheel=0.45.1
30
+ - xz=5.8.1
31
+ - xz-gpl-tools=5.8.1
32
+ - xz-tools=5.8.1
33
+ - pip:
34
+ - easydict==1.13
35
+ - filelock==3.13.1
36
+ - fsspec==2024.6.1
37
+ - jinja2==3.1.4
38
+ - markupsafe==2.1.5
39
+ - mpmath==1.3.0
40
+ - networkx==3.0
41
+ - numpy==1.24.4
42
+ - nvidia-cublas-cu11==11.10.3.66
43
+ - nvidia-cuda-nvrtc-cu11==11.7.99
44
+ - nvidia-cuda-runtime-cu11==11.7.99
45
+ - nvidia-cudnn-cu11==8.5.0.96
46
+ - packaging==25.0
47
+ - scipy==1.10.1
48
+ - six==1.17.0
49
+ - sympy==1.13.3
50
+ - torch==2.4.1+cpu
51
+ - typing-extensions==4.13.2
52
+ prefix: /home/lily/yz979/anaconda3/envs/040_test
configs/040_test/explicit.txt ADDED
@@ -0,0 +1,31 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # This file may be used to create an environment using:
2
+ # $ conda create --name <env> --file <this file>
3
+ # platform: linux-64
4
+ @EXPLICIT
5
+ https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
6
+ https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2025.8.3-hbd8a1cb_0.conda#74784ee3d225fc3dca89edb635b4e5cc
7
+ https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.44-ha97dd6f_2.conda#14bae321b8127b63cba276bd53fac237
8
+ https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.1.0-h767d61c_5.conda#dcd5ff1940cd38f6df777cac86819d60
9
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10
+ https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.1.0-h767d61c_5.conda#264fbfba7fb20acf3b29cde153e345ce
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+ https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.6-h2dba641_1.conda#ede4673863426c0883c0063d853bbd85
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14
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15
+ https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hb9d3cd8_1.conda#d864d34357c3b65a4b731f78c0801dc4
16
+ https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.41.2-he9a06e4_0.conda#80c07c68d2f6870250959dcc95b209d1
17
+ https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
18
+ https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
19
+ https://conda.anaconda.org/conda-forge/linux-64/openssl-3.5.3-h26f9b46_1.conda#4fc6c4c88da64c0219c0c6c0408cedd4
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21
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+ https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8c095d6_2.conda#283b96675859b20a825f8fa30f311446
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+ https://conda.anaconda.org/conda-forge/linux-64/xz-gpl-tools-5.8.1-hbcc6ac9_2.conda#bf627c16aa26231720af037a2709ab09
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+ https://conda.anaconda.org/conda-forge/linux-64/xz-tools-5.8.1-hb9d3cd8_2.conda#1bad2995c8f1c8075c6c331bf96e46fb
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+ https://conda.anaconda.org/conda-forge/linux-64/xz-5.8.1-hbcc6ac9_2.conda#68eae977d7d1196d32b636a026dc015d
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+ https://conda.anaconda.org/conda-forge/noarch/wheel-0.45.1-pyhd8ed1ab_0.conda#bdb2f437ce62fd2f1fef9119a37a12d9
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+ https://conda.anaconda.org/conda-forge/noarch/pip-22.1.2-pyhd8ed1ab_0.tar.bz2#d29185c662a424f8bea1103270b85c96
configs/040_test/meta.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ {
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+ "env": "040_test",
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configs/040_test/pip-clean.txt ADDED
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+ zope.event==4.5.0
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+ zstandard==0.23.0
configs/040_test/pip-freeze.txt ADDED
@@ -0,0 +1,454 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ absl-py==2.3.1
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9
+ allennlp==0.8.4
10
+ altair==5.3.0
11
+ annotated-types==0.6.0
12
+ anyio==3.7.1
13
+ APScheduler==3.11.2
14
+ arxiv==2.1.0
15
+ astunparse==1.6.3
16
+ async-timeout==4.0.3
17
+ attrs==25.3.0
18
+ autograd==1.7.0
19
+ autoray==0.6.12
20
+ awscli==1.32.93
21
+ azure-core==1.33.0
22
+ azure-identity==1.21.0
23
+ azure-storage-blob==12.26.0
24
+ Babel==2.9.1
25
+ backoff==2.2.1
26
+ backports.zoneinfo==0.2.1
27
+ bcrypt==4.1.2
28
+ beartype==0.14.1
29
+ better-abc==0.0.3
30
+ biopython==1.83
31
+ bitarray==2.5.1
32
+ bitsandbytes==0.43.1
33
+ blessed==1.20.0
34
+ blis==0.7.11
35
+ boto3==1.36.0
36
+ botocore==1.36.26
37
+ botorch==0.8.5
38
+ bpl==0.1.1
39
+ Brotli==1.1.0
40
+ bs4==0.0.2
41
+ cachetools==4.2.4
42
+ cffi==1.15.0
43
+ cftime==1.6.4.post1
44
+ chaospy==3.3.9
45
+ charset-normalizer==3.4.7
46
+ chex==0.1.7
47
+ chroma-hnswlib==0.7.3
48
+ chromadb==0.4.15
49
+ click==8.1.7
50
+ cloudpathlib==0.16.0
51
+ cobra==0.29.1
52
+ cohere==5.3.3
53
+ coloredlogs==15.0.1
54
+ confection==0.1.4
55
+ ConfigArgParse==1.5.3
56
+ conllu==0.11
57
+ coverage==7.6.1
58
+ cpm-kernels==1.0.11
59
+ cryptography==42.0.5
60
+ cvxopt==1.3.2
61
+ cymem==2.0.8
62
+ Cython==0.29.30
63
+ dataclasses==0.6
64
+ dataclasses-json==0.6.4
65
+ datasets==2.19.0
66
+ deepdiff==7.0.1
67
+ Deprecated==1.2.14
68
+ deprecation==2.1.0
69
+ dill==0.3.8
70
+ distro==1.9.0
71
+ dm-tree==0.1.8
72
+ dnspython==2.6.1
73
+ docstring_parser==0.17.0
74
+ docutils==0.15.2
75
+ dotenv==0.9.9
76
+ duckduckgo-search==3.9.9
77
+ easydict==1.13
78
+ editdistance==0.6.0
79
+ effdet==0.4.1
80
+ einops==0.7.0
81
+ email-validator==2.3.0
82
+ emoji==2.11.1
83
+ equinox==0.10.4
84
+ et-xmlfile==1.1.0
85
+ eval_type_backport==0.2.2
86
+ exceptiongroup==1.2.1
87
+ fairseq==0.10.2
88
+ faiss-cpu==1.7.4
89
+ faiss-gpu==1.7.2
90
+ fancy-einsum==0.0.3
91
+ fastapi==0.115.14
92
+ fastapi-sso==0.16.0
93
+ fastavro==1.9.4
94
+ fastuuid==0.13.5
95
+ fbpca==1.0
96
+ feedparser==6.0.10
97
+ ffmpy==0.3.2
98
+ filelock==3.13.1
99
+ filetype==1.2.0
100
+ finch-clust @ git+https://github.com/ssarfraz/FINCH-Clustering.git@b18166999af5f93c66edba8bdbae096f8795e82c
101
+ flaky==3.7.0
102
+ Flask-Cors==3.0.10
103
+ frozenlist==1.4.1
104
+ fschat==0.2.35
105
+ fsspec==2025.3.0
106
+ ftfy==6.0.3
107
+ future==0.18.2
108
+ fuzzywuzzy==0.18.0
109
+ gdown==5.2.0
110
+ geosketch==1.3
111
+ geotorch==0.3.0
112
+ get-annotations==0.1.2
113
+ gevent==21.12.0
114
+ gitdb==4.0.11
115
+ GitPython==3.1.43
116
+ google-pasta==0.2.0
117
+ googleapis-common-protos==1.63.0
118
+ gpustat==1.1.1
119
+ gpytorch==1.10
120
+ gradio_client==0.16.0
121
+ graphlib_backport==1.1.0
122
+ greenlet==1.1.2
123
+ gunicorn==23.0.0
124
+ h11==0.14.0
125
+ h2==4.1.0
126
+ hf-xet==1.2.0
127
+ hf_transfer==0.1.9
128
+ hpack==4.0.0
129
+ httpcore==1.0.5
130
+ httptools==0.6.1
131
+ httpx==0.28.1
132
+ httpx-sse==0.4.0
133
+ huggingface_hub==0.36.1
134
+ humanfriendly==10.0
135
+ hyperframe==6.0.1
136
+ icetk==0.0.4
137
+ igraph==0.11.8
138
+ imageio==2.35.1
139
+ imagesize==1.3.0
140
+ imgaug==0.4.0
141
+ importlib-metadata==7.0.0
142
+ importlib_resources==6.4.5
143
+ inequalipy==1.0.5
144
+ iniconfig==1.1.1
145
+ inquirerpy==0.3.4
146
+ iopath==0.1.10
147
+ isodate==0.7.2
148
+ itsdangerous==2.0.1
149
+ jax==0.4.13
150
+ jaxlib==0.4.13
151
+ jaxtyping==0.2.19
152
+ Jinja2==3.1.6
153
+ jiter==0.9.1
154
+ jmespath==0.10.0
155
+ joblib==1.4.2
156
+ jsonnet==0.17.0
157
+ jsonpatch==1.33
158
+ jsonpath-python==1.0.6
159
+ jsonpickle==2.0.0
160
+ jsonschema==4.23.0
161
+ jsonschema-specifications==2023.12.1
162
+ kaggle==1.7.4.5
163
+ Keras-Preprocessing==1.1.2
164
+ kubernetes==29.0.0
165
+ langchain==0.1.16
166
+ langchain-community==0.0.34
167
+ langchain-core==0.1.46
168
+ langchain-experimental==0.0.57
169
+ langchain-text-splitters==0.0.1
170
+ langcodes==3.4.0
171
+ langdetect==1.0.9
172
+ langsmith==0.1.51
173
+ language_data==1.2.0
174
+ layoutparser==0.3.4
175
+ lazy_loader==0.4
176
+ leidenalg==0.10.2
177
+ Levenshtein==0.25.1
178
+ linear-operator==0.4.0
179
+ litellm==1.77.4
180
+ litellm-enterprise==0.1.20
181
+ litellm-proxy-extras==0.2.19
182
+ llama-index==0.9.35
183
+ llvmlite==0.41.1
184
+ lmdb==1.7.3
185
+ lxml==5.2.1
186
+ madoka==0.7.1
187
+ marisa-trie==1.1.0
188
+ Markdown==3.3.6
189
+ markdown-it-py==3.0.0
190
+ markdown2==2.4.13
191
+ markdownify==0.11.6
192
+ MarkupSafe==2.1.5
193
+ marshmallow==3.21.1
194
+ mdtex2html==1.3.0
195
+ mdurl==0.1.2
196
+ metaphor-python==0.1.23
197
+ ml-dtypes==0.2.0
198
+ monotonic==1.6
199
+ mpmath==1.3.0
200
+ mrcfile==1.5.4
201
+ msal==1.36.0
202
+ msal-extensions==1.3.0
203
+ msg-parser==1.2.0
204
+ msgpack==1.0.8
205
+ msgpack-numpy==0.4.3.2
206
+ multidict==6.0.5
207
+ multipledispatch==1.0.0
208
+ multiprocess==0.70.16
209
+ murmurhash==1.0.10
210
+ mypy-extensions==1.0.0
211
+ narwhals==1.42.1
212
+ natsort==8.4.0
213
+ nest-asyncio==1.6.0
214
+ netCDF4==1.7.2
215
+ networkx==3.0
216
+ neuroHarmonize==2.4.5
217
+ nh3==0.2.17
218
+ ninja==1.11.1.1
219
+ nltk==3.8.1
220
+ numba==0.58.1
221
+ numexpr==2.8.6
222
+ numpoly==1.0.6
223
+ numpy==1.24.4
224
+ numpydoc==1.1.0
225
+ nvidia-cublas-cu11==11.10.3.66
226
+ nvidia-cuda-nvrtc-cu11==11.7.99
227
+ nvidia-cuda-runtime-cu11==11.7.99
228
+ nvidia-cudnn-cu11==8.5.0.96
229
+ nvidia-ml-py==12.535.133
230
+ nvitop==1.3.2
231
+ oauthlib==3.2.2
232
+ onnx==1.16.0
233
+ onnxruntime==1.15.1
234
+ openai==1.101.0
235
+ openpyxl==3.0.9
236
+ opentelemetry-api==1.24.0
237
+ opentelemetry-exporter-otlp-proto-common==1.24.0
238
+ opentelemetry-exporter-otlp-proto-grpc==1.24.0
239
+ opentelemetry-proto==1.24.0
240
+ opentelemetry-sdk==1.24.0
241
+ opentelemetry-semantic-conventions==0.45b0
242
+ opt-einsum==3.3.0
243
+ optax==0.1.5
244
+ ordered-set==4.1.0
245
+ orjson==3.10.1
246
+ overrides==7.7.0
247
+ packaging==26.2
248
+ pandas==2.0.3
249
+ pandas-stubs==1.2.0.45
250
+ parsimonious==0.8.1
251
+ pathlib==1.0.1
252
+ patsy==1.0.1
253
+ pdf2image==1.17.0
254
+ pfzy==0.3.4
255
+ PICOS==2.6.1
256
+ pikepdf==8.4.1
257
+ pip-search==0.0.12
258
+ pkgutil_resolve_name==1.3.10
259
+ plac==0.9.6
260
+ plotly==6.3.0
261
+ pluggy==1.5.0
262
+ ply==3.11
263
+ pondpond==1.4.1
264
+ pooch==1.8.2
265
+ portalocker==2.4.0
266
+ posthog==3.5.0
267
+ preshed==3.0.9
268
+ prettytable==3.11.0
269
+ primer3-py==2.2.0
270
+ prompt-toolkit==3.0.43
271
+ propcache==0.2.0
272
+ PuLP==3.1.1
273
+ pulsar-client==3.5.0
274
+ pyarrow==17.0.0
275
+ pyarrow-hotfix==0.6
276
+ pyclipper==1.3.0.post5
277
+ pycocotools==2.0.7
278
+ pycparser==2.21
279
+ pydantic==2.10.6
280
+ pydantic_core==2.27.2
281
+ pydeck==0.9.0b1
282
+ pyDOE2==1.3.0
283
+ pydub==0.25.1
284
+ pyfaidx==0.9.0.1
285
+ Pygments==2.19.2
286
+ PyJWT==2.8.0
287
+ pymodbus==3.6.9
288
+ PyMuPDF==1.23.16
289
+ PyMuPDFb==1.23.9
290
+ PyNaCl==1.6.2
291
+ pynndescent==0.5.13
292
+ Pyomo==6.8.2
293
+ pyOpenSSL==24.1.0
294
+ pypandoc==1.13
295
+ pypdf==4.2.0
296
+ pypdfium2==4.29.0
297
+ PyPika==0.48.9
298
+ PyQt5==5.15.7
299
+ PyQt5-Qt5==5.15.17
300
+ PyQt5_sip==12.15.0
301
+ pyro-api==0.1.2
302
+ pyro-ppl==1.9.1
303
+ pysam==0.23.3
304
+ PySocks==1.7.1
305
+ pysqlite3-binary==0.5.2.post3
306
+ pystan==2.19.1.1
307
+ pytesseract==0.3.10
308
+ pytest-cov==5.0.0
309
+ python-dateutil==2.9.0.post0
310
+ python-decouple==3.8
311
+ python-docx==1.1.0
312
+ python-dotenv==1.0.1
313
+ python-iso639==2024.4.27
314
+ python-Levenshtein==0.25.1
315
+ python-multipart==0.0.18
316
+ python-pptx==0.6.23
317
+ python-slugify==8.0.4
318
+ pytorch-pretrained-bert==0.6.2
319
+ pytz==2025.2
320
+ pyvista==0.44.2
321
+ PyWavelets==1.4.1
322
+ PyYAML==6.0.3
323
+ quantile-python==1.1
324
+ rapidfuzz==3.8.1
325
+ rapidocr-onnxruntime==1.3.8
326
+ ray==2.10.0
327
+ rdkit==2024.3.5
328
+ redis==6.1.1
329
+ referencing==0.35.1
330
+ regex==2022.4.24
331
+ requests==2.32.4
332
+ requests-oauthlib==1.3.0
333
+ responses==0.16.0
334
+ rich==13.7.1
335
+ rouge-score==0.1.2
336
+ rpds-py==0.20.1
337
+ rq==2.3.3
338
+ rsa==4.7.2
339
+ ruff==0.4.2
340
+ rustworkx==0.15.1
341
+ s3transfer==0.11.3
342
+ sacrebleu==2.1.0
343
+ sacremoses==0.0.46
344
+ safetensors==0.4.3
345
+ scipy==1.10.1
346
+ scooby==0.10.1
347
+ seaborn==0.13.2
348
+ semantic-version==2.10.0
349
+ sentence-transformers==2.2.2
350
+ sentencepiece==0.1.91
351
+ sentry-sdk==2.39.0
352
+ session_info==1.0.1
353
+ sgmllib3k==1.0.0
354
+ shapely==2.0.4
355
+ shellingham==1.5.4
356
+ shortuuid==1.0.13
357
+ six==1.17.0
358
+ smart-open==6.4.0
359
+ smmap==5.0.1
360
+ sniffio==1.3.1
361
+ snowballstemmer==2.2.0
362
+ sobol-seq==0.2.0
363
+ socksio==1.0.0
364
+ soupsieve==2.5
365
+ spacy-legacy==3.0.12
366
+ spacy-loggers==1.0.5
367
+ Sphinx==4.3.1
368
+ sphinxcontrib-applehelp==1.0.2
369
+ sphinxcontrib-devhelp==1.0.2
370
+ sphinxcontrib-htmlhelp==2.0.0
371
+ sphinxcontrib-jsmath==1.0.1
372
+ sphinxcontrib-qthelp==1.0.3
373
+ sphinxcontrib-serializinghtml==1.1.5
374
+ SQLAlchemy==2.0.19
375
+ sqlparse==0.4.2
376
+ sse-starlette==1.8.2
377
+ starlette==0.44.0
378
+ statsmodels==0.14.1
379
+ stdlib-list==0.10.0
380
+ streamlit==1.30.0
381
+ streamlit-aggrid==0.3.4.post3
382
+ streamlit-antd-components==0.3.1
383
+ streamlit-chatbox==1.1.11
384
+ streamlit-feedback==0.1.3
385
+ streamlit-modal==0.1.0
386
+ streamlit-option-menu==0.3.12
387
+ strsimpy==0.2.1
388
+ svgwrite==1.4.3
389
+ sympy==1.13.3
390
+ tabnet @ git+https://github.com/titu1994/tf-TabNet.git@53b144b4dd47184c3ee891501dcd90fb37683ab7
391
+ tabulate==0.8.9
392
+ tenacity==8.2.3
393
+ tensorboard-plugin-wit==1.8.0
394
+ tensorboardX==2.4.1
395
+ text-unidecode==1.3
396
+ texttable==1.7.0
397
+ thefuzz==0.22.1
398
+ threadpoolctl==3.5.0
399
+ tifffile==2023.7.10
400
+ tiktoken==0.7.0
401
+ timm==0.9.16
402
+ tk==0.1.0
403
+ tokenizers==0.20.3
404
+ toml==0.10.2
405
+ tomlkit==0.12.0
406
+ toolz==0.12.1
407
+ torch==2.4.1+cpu
408
+ torch-geometric==2.6.1
409
+ torchaudio==2.1.2+cu118
410
+ torchtext==0.4.0
411
+ tornado==6.4
412
+ tqdm==4.67.1
413
+ transformer-lens==2.16.1
414
+ transformers==4.46.3
415
+ transformers-stream-generator==0.0.5
416
+ typed-argument-parser==1.10.1
417
+ typeguard==4.4.0
418
+ typer==0.9.4
419
+ types-requests==2.31.0.20240406
420
+ typing-inspect==0.9.0
421
+ typing-utils==0.1.0
422
+ typing_extensions==4.13.2
423
+ tzdata==2024.1
424
+ tzlocal==5.2
425
+ umap-learn==0.5.7
426
+ Unidecode==1.3.2
427
+ unittest-xml-reporting==3.2.0
428
+ unstructured==0.11.0
429
+ unstructured-client==0.22.0
430
+ unstructured-inference==0.7.15
431
+ unstructured.pytesseract==0.3.12
432
+ uvicorn==0.29.0
433
+ uvloop==0.21.0
434
+ validators==0.28.1
435
+ vllm==0.2.7
436
+ vtk==9.3.1
437
+ wandb==0.22.0
438
+ watchdog==3.0.0
439
+ watchfiles==0.21.0
440
+ wavedrom==2.0.3.post3
441
+ weasel==0.3.4
442
+ websocket-client==1.8.0
443
+ websockets==13.1
444
+ Werkzeug==2.0.2
445
+ word2number==1.1
446
+ xlrd==2.0.1
447
+ XlsxWriter==3.0.2
448
+ xxhash==2.0.2
449
+ Yapsy==1.12.2
450
+ yarl==1.15.2
451
+ youtube-search==2.1.2
452
+ zipp==3.20.2
453
+ zope.event==4.5.0
454
+ zstandard==0.23.0
configs/043_test/editable.txt ADDED
File without changes
configs/043_test/env.yml ADDED
@@ -0,0 +1,75 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ name: 043_test
2
+ channels:
3
+ - conda-forge
4
+ - defaults
5
+ dependencies:
6
+ - _libgcc_mutex=0.1
7
+ - _openmp_mutex=4.5
8
+ - bzip2=1.0.8
9
+ - ca-certificates=2025.8.3
10
+ - ld_impl_linux-64=2.44
11
+ - libffi=3.4.6
12
+ - libgcc=15.1.0
13
+ - libgcc-ng=15.1.0
14
+ - libgomp=15.1.0
15
+ - liblzma=5.8.1
16
+ - liblzma-devel=5.8.1
17
+ - libnsl=2.0.1
18
+ - libsqlite=3.50.4
19
+ - libuuid=2.41.2
20
+ - libxcrypt=4.4.36
21
+ - libzlib=1.3.1
22
+ - ncurses=6.5
23
+ - openssl=3.5.3
24
+ - pip=22.1.2
25
+ - python=3.8.20
26
+ - readline=8.2
27
+ - setuptools=70.3.0
28
+ - tk=8.6.13
29
+ - wheel=0.45.1
30
+ - xz=5.8.1
31
+ - xz-gpl-tools=5.8.1
32
+ - xz-tools=5.8.1
33
+ - pip:
34
+ - certifi==2026.4.22
35
+ - filelock==3.16.1
36
+ - fsspec==2025.3.0
37
+ - idna==3.10
38
+ - jinja2==3.1.6
39
+ - markupsafe==2.1.5
40
+ - mpmath==1.3.0
41
+ - networkx==3.1
42
+ - numpy==1.24.4
43
+ - nvidia-cublas-cu11==11.10.3.66
44
+ - nvidia-cublas-cu12==12.9.2.10
45
+ - nvidia-cuda-cupti-cu12==12.9.79
46
+ - nvidia-cuda-nvrtc-cu11==11.7.99
47
+ - nvidia-cuda-nvrtc-cu12==12.9.86
48
+ - nvidia-cuda-runtime-cu11==11.7.99
49
+ - nvidia-cuda-runtime-cu12==12.9.79
50
+ - nvidia-cudnn-cu11==8.5.0.96
51
+ - nvidia-cudnn-cu12==8.9.2.26
52
+ - nvidia-cufft-cu12==11.4.1.4
53
+ - nvidia-curand-cu12==10.3.10.19
54
+ - nvidia-cusparse-cu12==12.5.10.65
55
+ - nvidia-nccl-cu12==2.18.1
56
+ - nvidia-nvjitlink-cu12==12.9.86
57
+ - nvidia-nvtx-cu12==12.9.79
58
+ - opencv-python==4.13.0.92
59
+ - packaging==20.9
60
+ - pillow==10.4.0
61
+ - pyyaml==6.0.3
62
+ - randaugment==1.0.2
63
+ - requests==2.32.4
64
+ - scikit-learn==1.3.2
65
+ - scipy==1.10.1
66
+ - six==1.17.0
67
+ - sympy==1.13.3
68
+ - torch==2.1.2
69
+ - torchsample==0.1.0
70
+ - torchvision==0.16.2
71
+ - triton==2.1.0
72
+ - typing-extensions==4.13.2
73
+ - urllib3==2.2.3
74
+ - wcwidth==0.2.14
75
+ prefix: /home/lily/yz979/anaconda3/envs/043_test