| { |
| "evaluation_sequences": 4096, |
| "expected_masked_residues": 140009, |
| "expected_source_counts": { |
| "mgnify": 1393, |
| "omg_img": 1378, |
| "uniref90": 1325 |
| }, |
| "historical_results": "Results measured with another sample count retain their original settings; this contract does not relabel them.", |
| "masking": { |
| "corruption": "replace every selected token with <mask>", |
| "eligible": "canonical amino-acid tokens only", |
| "minimum_targets": "one per protein when any eligible residue exists", |
| "probability": 0.15, |
| "rng": "PyTorch CUDA generator seeded with 20260821", |
| "runtime": "PyTorch 2.13.0; fixed batch shape 4 x 512" |
| }, |
| "protocol": "heldout-cluster-representative-mlm-v1", |
| "reduction": "mean over proteins of the mean masked-token negative log-likelihood per protein", |
| "sampling": { |
| "batch_grouping_fixed": true, |
| "crop": "random contiguous crop up to 510 residues, followed by BOS/EOS framing", |
| "mixture": { |
| "mgnify": 1.0, |
| "omg_img": 1.0, |
| "uniref90": 1.0 |
| }, |
| "source_choice": "NumPy default_rng; uniform mixture; source names sorted", |
| "source_rows": "source-specific shuffled rows without replacement within this sample" |
| }, |
| "schema_version": 1, |
| "settings": { |
| "batch_size": 4, |
| "batches": 1024, |
| "context_length": 512, |
| "sampling_seed": 20260821 |
| }, |
| "validation_pool": { |
| "manifest_sha256": "fe1ac0657085ab19fe6f56786006e9eb004ca66bc6c5b81dfd8e6bc3dcfda6ff", |
| "repo_id": "LuminScience/LuminBench-Nano-ESMC", |
| "revision": "bd38448d50d8f426d7b9bd4410b53159ea001259", |
| "sources": { |
| "mgnify": { |
| "bytes": 578470, |
| "maximum_sequence_sha256": "0000d08aea015e75fe4a484cf6f66c2d1d70d164bb0aa38389b22960983d53a2", |
| "minimum_sequence_sha256": "00000003d38602453faede027bc38ed844fb4416607527c22ff799f0d67654f7", |
| "path": "validation/mgnify/shard-00000.parquet", |
| "records": 4096, |
| "residues": 761606, |
| "sha256": "d9532c1e8490059dfb7178d261b85c31fa7306cd186c0348ee6e3e6ce563fb32" |
| }, |
| "omg_img": { |
| "bytes": 724943, |
| "maximum_sequence_sha256": "00010284808cc5f62cf36bdf8e9f8888f86f9ffd6964ca1a836b9dadef48a742", |
| "minimum_sequence_sha256": "0000000e7eb16834d3220c994cf1aeb688780a24f5af085705774d0e94d52b7b", |
| "path": "validation/omg_img/shard-00000.parquet", |
| "records": 4096, |
| "residues": 1027103, |
| "sha256": "a32797838c3338266c62aa61112263cea4515a4a9b977035f88de9cefda08444" |
| }, |
| "uniref90": { |
| "bytes": 926829, |
| "maximum_sequence_sha256": "0003b7ff4ff70e7b21ec32fae89f0792f0d4f86a489346af4877ef8fbad8126b", |
| "minimum_sequence_sha256": "0000000db96f3a7c2cf445eb4fe4c632a9e047d131200e43131695c51dc2ebdd", |
| "path": "validation/uniref90/shard-00000.parquet", |
| "records": 4096, |
| "residues": 1393942, |
| "sha256": "f059d9793eb8c7fc929764a37473205d4819652d41baed0e07799bde1055a0fa" |
| } |
| }, |
| "total_sequences": 12288 |
| } |
| } |
|
|
