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README.md
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# UniProtKB Processed
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- `default`: a compact JSONL file/table shard index that is easy to browse in the Hugging Face Dataset Viewer.
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- `sprot`, `sprot_varsplic`, and `trembl`: the full parsed UniProtKB protein-entry tables from the original repository.
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The `default` config does not duplicate all 203M protein rows. It indexes the repository files, table shards, source sets, source sizes, and split-level row counts so the dataset has a stable table preview while the full source-specific tables remain available through named configs.
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## Dataset Summary
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## Citation
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# UniProtKB Processed
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The aim of the UniProt Knowledgebase (UniProtKB; https://www.uniprot.org/) is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this publication, we describe ongoing changes to our production pipeline to limit the sequences available in UniProtKB to high-quality, non-redundant reference proteomes. We continue to manually curate the scientific literature to add the latest functional data and use machine learning techniques. We also encourage community curation to ensure key publications are not missed. We provide an update on the automatic annotation methods used by UniProtKB to predict information for unreviewed entries describing unstudied proteins. Finally, updates to the UniProt website are described, including a new tab linking protein to genomic information. In recognition of its value to the scientific community, the UniProt database has been awarded Global Core Biodata Resource status.
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## Dataset Summary
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## Citation
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```
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@article{uniprot2025,
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title = {{UniProt}: the {Universal Protein Knowledgebase} in 2025},
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author = {{The UniProt Consortium}},
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journal = {Nucleic Acids Research},
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volume = {53},
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number = {D1},
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pages = {D609--D617},
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year = {2025},
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publisher = {Oxford University Press},
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doi = {10.1093/nar/gkae1010}
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}
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```
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