anindya64 commited on
Commit
c9dcec5
·
verified ·
1 Parent(s): ce01506

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +14 -9
README.md CHANGED
@@ -64,12 +64,7 @@ configs:
64
 
65
  # UniProtKB Processed
66
 
67
- This repository contains two useful views of LiteFold/UniProtKB:
68
-
69
- - `default`: a compact JSONL file/table shard index that is easy to browse in the Hugging Face Dataset Viewer.
70
- - `sprot`, `sprot_varsplic`, and `trembl`: the full parsed UniProtKB protein-entry tables from the original repository.
71
-
72
- The `default` config does not duplicate all 203M protein rows. It indexes the repository files, table shards, source sets, source sizes, and split-level row counts so the dataset has a stable table preview while the full source-specific tables remain available through named configs.
73
 
74
  ## Dataset Summary
75
 
@@ -217,6 +212,16 @@ CC BY 4.0.
217
 
218
  ## Citation
219
 
220
- If you use the UniProtKB records, cite UniProt:
221
-
222
- The UniProt Consortium. UniProt: the Universal Protein Knowledgebase in 2023. Nucleic Acids Research, 51(D1):D523-D531, 2023.
 
 
 
 
 
 
 
 
 
 
 
64
 
65
  # UniProtKB Processed
66
 
67
+ The aim of the UniProt Knowledgebase (UniProtKB; https://www.uniprot.org/) is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this publication, we describe ongoing changes to our production pipeline to limit the sequences available in UniProtKB to high-quality, non-redundant reference proteomes. We continue to manually curate the scientific literature to add the latest functional data and use machine learning techniques. We also encourage community curation to ensure key publications are not missed. We provide an update on the automatic annotation methods used by UniProtKB to predict information for unreviewed entries describing unstudied proteins. Finally, updates to the UniProt website are described, including a new tab linking protein to genomic information. In recognition of its value to the scientific community, the UniProt database has been awarded Global Core Biodata Resource status.
 
 
 
 
 
68
 
69
  ## Dataset Summary
70
 
 
212
 
213
  ## Citation
214
 
215
+ ```
216
+ @article{uniprot2025,
217
+ title = {{UniProt}: the {Universal Protein Knowledgebase} in 2025},
218
+ author = {{The UniProt Consortium}},
219
+ journal = {Nucleic Acids Research},
220
+ volume = {53},
221
+ number = {D1},
222
+ pages = {D609--D617},
223
+ year = {2025},
224
+ publisher = {Oxford University Press},
225
+ doi = {10.1093/nar/gkae1010}
226
+ }
227
+ ```