data/processing_summary.json

{
  "compression": "zstd",
  "link_min_combined_score": null,
  "max_rows_per_table": null,
  "num_proc": 32,
  "output_dir": "data",
  "raw_dir": "v12.0",
  "rows_per_chunk": 100000,
  "split_ratios": {
    "test": 0.01,
    "train": 0.98,
    "validation": 0.01
  },
  "split_seed": "string-v12.0",
  "stats": {
    "protein_aliases": {
      "parser": {
        "bad_rows": 0,
        "chunks": 6281,
        "filtered_rows": 0,
        "parsed_rows": 628096921
      },
      "rows": {
        "test": 6279523,
        "train": 615533987,
        "validation": 6283411
      },
      "shards": {
        "test": 6281,
        "train": 6281,
        "validation": 6281
      }
    },
    "protein_info": {
      "parser": {
        "bad_rows": 0,
        "chunks": 594,
        "filtered_rows": 0,
        "parsed_rows": 59309604
      },
      "rows": {
        "test": 593633,
        "train": 58123200,
        "validation": 592771
      },
      "shards": {
        "test": 594,
        "train": 594,
        "validation": 594
      }
    },
    "protein_links": {
      "parser": {
        "bad_rows": 0,
        "chunks": 275414,
        "filtered_rows": 0,
        "parsed_rows": 27541372832
      },
      "rows": {
        "test": 275437468,
        "train": 26990522006,
        "validation": 275413358
      },
      "shards": {
        "test": 275414,
        "train": 275414,
        "validation": 275414
      }
    },
    "protein_sequences": {
      "parser": {
        "bad_rows": 0,
        "chunks": 594,
        "filtered_rows": 0,
        "parsed_rows": 59309604
      },
      "rows": {
        "test": 593633,
        "train": 58123200,
        "validation": 592771
      },
      "shards": {
        "test": 594,
        "train": 594,
        "validation": 594
      }
    },
    "species": {
      "parser": {
        "bad_rows": 0,
        "chunks": 1,
        "filtered_rows": 0,
        "parsed_rows": 12535
      },
      "rows": {
        "test": 157,
        "train": 12261,
        "validation": 117
      },
      "shards": {
        "test": 1,
        "train": 1,
        "validation": 1
      }
    }
  },
  "tables": [
    "species",
    "protein_info",
    "protein_aliases",
    "protein_sequences",
    "protein_links"
  ]
}