FireProtDB / dataset_summary.json
anindya64's picture
Replace nested FireProtDB rows with flat Parquet train/test table
ed1616a verified
{
"source": "LiteFold/FireProtDB",
"source_sha": "79354b4f8754e21c3eb41aaf3dd63ba34ae750cd",
"source_table": "tables/labeled_fireprotdb_fireprotdb_search_all.jsonl.jsonl",
"source_table_rows": 5465660,
"source_table_bytes": 8466920603,
"viewer_table_scope": "flat FireProtDB experiment/mutation rows",
"data_format": "parquet",
"rows": 5465660,
"splits": {
"test": 546499,
"train": 4919161
},
"subject_type_counts": {
"mutant": 5453252,
"sequence": 12408
},
"experiment_dataset_counts": {
"Domainome DDG": 4071188,
"MegaScale": 775235,
"Domainome FITNESS": 591671,
"ProTherm": 27406,
"COZYME": 160
},
"measurement_type_counts": {
"DOMAINOME_DDG": 4071188,
"DOMAINOME_DDG_STD": 4071188,
"DG": 780672,
"TRYPSIN_ML": 769050,
"CHYMOTRYPSIN_ML": 768452,
"DDG": 613208,
"DOMAINOME_FITNESS": 591671,
"DOMAINOME_FITNESS_STD": 591671,
"STABILIZING": 580091,
"REVERSIBILITY": 26618,
"TM": 13640,
"CM": 7134,
"M": 6910,
"DTM": 5995,
"STATE": 5362,
"DHVH": 4866,
"DH": 4632,
"DCP": 2923
},
"annotation_type_counts": {
"METHOD": 27552,
"PH": 27499,
"MEASURE": 27351,
"BUFFER": 27139,
"BUFFER_CONC": 25232,
"_PDB_CHAIN_MUTATION": 17064,
"EXP_TEMPERATURE": 13590,
"ION": 11599,
"ION_CONC": 11528
},
"feature_type_counts": {
"CONSERVATION": 5141973,
"BINDING_SITE": 17238,
"ACTIVE_SITE": 240
},
"mutation_event_counts": {
"deletions": 54296,
"insertions": 50613,
"substitutions": 5543778
},
"columns": [
"row_id",
"dataset_id",
"source_dataset",
"source_file",
"source_table",
"source_sha",
"row_index",
"split",
"subject_type",
"entry_id",
"sequence_id",
"target_sequence_id",
"source_sequence_length",
"target_sequence_length",
"protein_id",
"protein_name",
"organism",
"isoform",
"protein_ids",
"protein_names",
"organisms",
"isoforms",
"uniprot_accessions",
"interpro_accessions",
"ec_numbers",
"megascale_ids",
"other_references",
"mutations",
"substitutions",
"deletions",
"insertions",
"mutation_count",
"substitution_count",
"deletion_count",
"insertion_count",
"first_position",
"first_source_aa",
"first_target_aa",
"conservation",
"feature_types",
"pdb_ids",
"afdb_ids",
"structure_ids",
"structure_methods",
"structure_resolution_min",
"residue_positions",
"residue_chain_names",
"residue_secondary_structures",
"residue_in_pocket_any",
"residue_in_tunnel_any",
"residue_asa_mean",
"residue_bfactor_mean",
"experiment_id",
"experiment_dataset",
"ph",
"measure",
"method",
"buffer",
"buffer_conc",
"exp_temperature",
"ion",
"ion_conc",
"pdb_chain_mutation",
"tm",
"dtm",
"dg",
"dg_text",
"ddg",
"dh",
"dcp",
"dhvh",
"cm",
"m_value",
"trypsin_ml",
"chymotrypsin_ml",
"stabilizing",
"stabilizing_text",
"domainome_fitness",
"domainome_fitness_std",
"domainome_ddg",
"domainome_ddg_std",
"reversibility",
"state",
"measurement_types",
"measurement_datasets",
"annotation_types",
"publication_id",
"publication_type",
"publication_title",
"publication_year",
"publication_doi",
"publication_pmid",
"publication_journal",
"publication_url",
"publication_author_count",
"publication_authors",
"annotations_json",
"measurements_json",
"features_json"
],
"files": {
"train": "data/train-00000-of-00001.parquet",
"test": "data/test-00000-of-00001.parquet"
}
}