#!/usr/bin/env bash # Detects the two failure modes the retry loop inside run_all.sh cannot see. # # (setsid nohup bash scripts/watchdog.sh > work/logs/watchdog.log 2>&1 < /dev/null &) # # WHAT THE RETRY LOOP ALREADY HANDLES: a step that exits non-zero. It retries three times. # # WHAT IT CANNOT HANDLE, AND WHY THIS EXISTS: # 1. A DEAD TRACK. When retr_F4 failed three times, its track function returned and the # track simply stopped - silently, with the other track still running and the status # file showing nothing new. Nothing noticed for seven minutes. This restarts a track # whose steps are unfinished but whose process is gone. Restarting is safe because # every step skips work whose output already exists. # 2. A HUNG STEP. A process that is alive but has written nothing for a long time is # worse than a crash: the retry loop waits on it forever. CUDA deadlocks and NFS # stalls both look like this. After STALL_S with no log growth the step is killed, and # run_all's own retry then restarts it from its checkpoint. # # It never touches anyone else's processes: every kill is matched on our own script paths # under this directory, checked against the command line, never on a bare name. set -uo pipefail cd "$(dirname "$0")/.." ROOT=$(pwd) W="${BERX_WORK:-$ROOT/work}" L="$W/logs" STALL_S="${STALL_S:-1500}" # 25 min with no log growth = hung POLL_S="${POLL_S:-60}" mkdir -p "$L" log() { echo "[$(date '+%H:%M:%S')] $*"; } track_alive() { # $1 = 1 or 2 # Per-track pidfile written by run_all.sh. Counting run_all.sh processes cannot distinguish # the tracks - with either one running the count is identical - so a dead track hid behind # a live one. That is the bug this watchdog exists to catch, so it must not repeat it. local pf="$L/track$1.pid" [ -f "$pf" ] || return 1 local pid; pid=$(cat "$pf" 2>/dev/null) [ -n "$pid" ] && [ -d "/proc/$pid" ] } track_done() { # track 1 is done once the submission exists; track 2 once shards exist case "$1" in 1) [ -f "$W/output_v2/matching_results.tsv" ] || grep -q '"pass": false' \ "$W/rescore/gate.json" 2>/dev/null ;; 2) [ -f "$W/shards/test_manifest.json" ] ;; esac } restart_track() { local t="$1" log "TRACK $t appears dead with work outstanding - restarting (steps with outputs skip)" ( cd "$ROOT" && TRACKS="$t" setsid nohup bash scripts/run_all.sh \ > "$L/run_track${t}_restart_$(date +%H%M%S).log" 2>&1 < /dev/null & ) } log "watchdog up. stall=${STALL_S}s poll=${POLL_S}s work=$W" while true; do sleep "$POLL_S" # ---- 1. hung stage, judged by CPU TIME, not by log mtime. # # A log that has not grown does NOT mean the job is stuck: Python block-buffers stdout to # a file, so a stage started without -u writes nothing for its entire run. t1_fit.log sat # at 0 bytes while the fit burned 198% CPU. Killing on log mtime alone would have # destroyed a healthy 40-minute job. # # A process that is genuinely wedged - CUDA deadlock, NFS stall - stops accumulating CPU # time. That is the signal. The log is only used as a secondary confirmation. for pid in $(pgrep -u "$USER" -f "scripts/[0-9][0-9]_.*\.py" 2>/dev/null); do cmd=$(tr '\0' ' ' < "/proc/$pid/cmdline" 2>/dev/null) # Only ever our own scripts, under our own root. Other users run their own pipelines on # this box and one of them is a scripts/run_p4_verifier.py. case "$cmd" in *"$ROOT/scripts/"*|*" scripts/0"*|*" scripts/1"*) ;; *) continue ;; esac # utime+stime in clock ticks, fields 14 and 15 of /proc//stat cpu=$(awk '{print $14+$15}' "/proc/$pid/stat" 2>/dev/null) || continue seen="$L/.cpu_$pid" if [ -f "$seen" ]; then read -r oldcpu oldts < "$seen" if [ "$cpu" -gt "$oldcpu" ]; then echo "$cpu $(date +%s)" > "$seen" # progressing else idle=$(( $(date +%s) - oldts )) if [ "$idle" -ge "$STALL_S" ]; then log "STALL pid $pid used no CPU for ${idle}s: $cmd" log " killing it so run_all retries the step from its checkpoint" kill -TERM "$pid" 2>/dev/null; sleep 10; kill -KILL "$pid" 2>/dev/null rm -f "$seen" fi fi else echo "$cpu $(date +%s)" > "$seen" fi done # forget bookkeeping for processes that have exited for f in "$L"/.cpu_*; do [ -f "$f" ] || continue p=${f##*/.cpu_} [ -d "/proc/$p" ] || rm -f "$f" done # ---- 2. dead track with work outstanding for t in 1 2; do track_done "$t" && continue if ! track_alive "$t"; then # confirm over two polls so a momentary gap between steps is not mistaken for death sleep 15 track_alive "$t" && continue restart_track "$t" sleep 30 fi done # ---- 3. announce the milestones, so the log alone tells the story if [ -f "$W/rescore/gate.json" ] && [ ! -f "$L/.announced_gate" ]; then log "GATE A: $(tr -d '\n ' < "$W/rescore/gate.json")"; touch "$L/.announced_gate" fi if [ -f "$W/shards/test_manifest.json" ] && [ ! -f "$L/.announced_shards" ]; then log "CE SHARDS READY - Colab lanes can start"; touch "$L/.announced_shards" fi if [ -f "$W/output_v2/matching_results.tsv" ] && [ ! -f "$L/.announced_sub" ]; then log "SUBMISSION WRITTEN: $W/output_v2/matching_results.tsv"; touch "$L/.announced_sub" fi done