"""Step C. GPU retrieval for one channel and one query shard. CUDA_VISIBLE_DEVICES=0 nice -n 19 ionice -c3 python scripts/03_retrieve.py \ --split test --channel e5_small --k 100 --shard 0 --nshards 2 Two GPUs run the same command with --shard 0 and --shard 1. They share nothing, so either shard can be re-run alone after a failure without redoing the other. The channel matrices are expected at BERX_EMB//_{s1,pool}.npy, fp16, L2 normalised, in source row order. `--verify` checks the shapes against ids.json before spending an hour on a matrix that turns out to be the wrong model - the two 1024-d channels are interchangeable by shape and not by content, so shape alone will not catch a mix-up. """ from __future__ import annotations import argparse import json import os import sys import time import numpy as np import pandas as pd sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) from berx import paths as P # noqa: E402 from berx import retrieve as R # noqa: E402 def verify_ids(channel: str, split: str, which: str, prep: str, parquet: str, n_check=200_000): """Check the embedding's ids.txt against the prepared source, row by row. Only the first and last `n_check` rows are compared in full: reading 10M ids takes longer than the check is worth, and any offset introduced mid-file shifts every subsequent row, so the tail catches it. """ ids_path = P.emb_ids(channel, split, which) if not os.path.exists(ids_path): print(f" ! no ids.txt for {channel}/{split}_{which}; row order UNVERIFIED") return want = pd.read_parquet(os.path.join(prep, parquet), columns=["entity_id"])["entity_id"] with open(ids_path) as fh: got = [ln.strip() for ln in fh] assert len(got) == len(want), \ f"{ids_path}: {len(got):,} ids but the prepared {parquet} has {len(want):,} rows" k = min(n_check, len(want)) head_bad = [i for i in range(k) if got[i] != want.iloc[i]] tail_bad = [i for i in range(len(want) - k, len(want)) if got[i] != want.iloc[i]] assert not head_bad and not tail_bad, ( f"{ids_path}: row order does not match {parquet}. " f"First mismatch at row {(head_bad or tail_bad)[0]:,}. " f"Every candidate index from there on would be wrong.") print(f" ids verified: {channel}/{split}_{which} {len(got):,} rows, " f"head+tail {k:,} each match") def main(): ap = argparse.ArgumentParser() ap.add_argument("--split", default="test") ap.add_argument("--channel", required=True, help="a configured channel, or an ad-hoc one built by 08_embed.py " "(nameonly / addronly)") ap.add_argument("--k", type=int, default=100) ap.add_argument("--shard", type=int, default=0) ap.add_argument("--nshards", type=int, default=1) ap.add_argument("--device", default="cuda:0") ap.add_argument("--qchunk", type=int, default=4096) ap.add_argument("--pblock", type=int, default=262_144) ap.add_argument("--resident", default="auto", choices=["auto", "yes", "no"]) ap.add_argument("--max-queries", type=int, default=0, help="debug: cap queries per country. Verifies the whole path on a busy " "box in seconds instead of hours. Never use for a real run.") ap.add_argument("--verify-only", action="store_true", help="check shapes, normalisation and row order, then exit") a = ap.parse_args() prep = os.path.dirname(P.work("prep", a.split, "_")) meta = json.load(open(os.path.join(prep, "ids.json"))) qc = np.load(os.path.join(prep, "country_s1.npy")) pc = np.load(os.path.join(prep, "country_pool.npy")) qp = P.emb(a.channel, a.split, "s1") pp = P.emb(a.channel, a.split, "pool") for p in (qp, pp): assert os.path.exists(p), f"missing embedding matrix: {p}" Q, Pm = np.load(qp, mmap_mode="r"), np.load(pp, mmap_mode="r") # channel_cfg, not CHANNELS: the rescue channels (nameonly, addronly) are built on demand # by 08_embed.py and have no declared entry. want_dim = P.channel_cfg(a.channel)["dim"] assert Q.shape == (meta["n_s1"], want_dim), \ f"{qp} is {Q.shape}, expected ({meta['n_s1']}, {want_dim})" assert Pm.shape[1] == want_dim, f"{pp} is {Pm.shape[1]}-d, expected {want_dim}" # A SUBSET pool (F4 covers only the address-less records) carries rows.npy mapping its # rows back to rows of the FULL pool. Everything downstream indexes the full pool, so # without this remap candidate index i means row i of a 265k subset while the fuse step # reads it as row i of a 10M pool - wrong, and with nothing to signal it. rows_path = P.emb_rows(a.channel, a.split, "pool") prow = np.load(rows_path) if os.path.exists(rows_path) else None if prow is not None and len(prow) != meta["n_pool"]: assert len(prow) == Pm.shape[0], \ f"rows.npy has {len(prow):,} entries but the matrix has {Pm.shape[0]:,} rows" print(f" subset pool: {Pm.shape[0]:,} of {meta['n_pool']:,} rows; " f"candidate indices remapped through rows.npy") pc = pc[prow] else: prow = None assert Pm.shape[0] == meta["n_pool"], \ f"{pp} has {Pm.shape[0]:,} rows, expected {meta['n_pool']:,}" nrm = np.linalg.norm(np.asarray(Q[:256], dtype=np.float32), axis=1) assert abs(float(nrm.mean()) - 1.0) < 0.02, \ f"query rows are not L2-normalised (mean norm {nrm.mean():.4f}); cosine would be wrong" # Verify row order by ENTITY ID, not by row count. A matrix with the right number of rows # in the wrong order produces candidate indices that are wrong for every row after the # first disturbance, and nothing downstream - not the validator, not the F0.5 - reports # anything other than a mediocre score. verify_ids(a.channel, a.split, "s1", prep, "source1.parquet") if prow is None: verify_ids(a.channel, a.split, "pool", prep, "pool.parquet") if a.verify_only: print("verify-only: shapes, normalisation and row order all check out.") return print(f"channel {a.channel} k={a.k} shard {a.shard}/{a.nshards} {a.device}") t0 = time.time() res = R.run_channel(qp, pp, qc, pc, a.k, a.device, a.shard, a.nshards, qchunk=a.qchunk, pblock=a.pblock, resident=a.resident, max_queries=a.max_queries or None) if prow is not None: res["c"] = prow[res["c"]].astype(np.int32) # subset row -> full pool row df = pd.DataFrame(res) out = P.work("retr", f"{a.split}_{a.channel}_s{a.shard}of{a.nshards}.parquet") df.to_parquet(out, index=False) el = time.time() - t0 print(f"wrote {out} {len(df):,} pairs {el/60:.1f} min " f"({len(df)/max(el,1e-9):,.0f} pairs/s)") if __name__ == "__main__": main()