"""Shared paths, schema helpers and the vLLM option-letter log-prob client for the full-item-pool screening run (exp/analysis/pool/TASK.md). Layout exp/results/pool/ small tabular outputs (csv/md) + parquet/duckdb pool_items_base.parquet pool_schema.py (all items, TASK schema) step0_kept.parquet step0_screen.py (dedup verdict per item) screen_counts_full.csv step0_screen.py step1/[.p].jsonl step1_blind.py (one row per item, append-only) step2/[.p].jsonl step2_single_frame.py step3/[.p].jsonl step3_v32_2b.py pool_items.parquet, pool.duckdb, pool_summary.md, run_accounting.csv (assemble/accounting) bench_exp/work/pool_items_cache/ per-bench enumeration cache (jsonl) for the 88 benchmarks without a T3 full-text export bench_exp/work/pool_embeddings/ bge-large-en-v1.5 cache per bench (ids.json + .npy), same layout as exp/data/embeddings/text bench_exp/work/pool_frames// frame_.jpg (448 px long side) + frames.json Item id = the pipeline qid (f"{bench}_{pool_index}", or the stage_b adapter qid for MVBench / LVBench / VideoMMMU). video_id = normalized content_hash, or "k:" + sha1(video_key)[:16] while the video is not yet normalized. """ import fcntl import hashlib import json import math import os import random import re import sys import time HERE = os.path.dirname(os.path.abspath(__file__)) # exp/analysis/pool EXP = os.path.abspath(os.path.join(HERE, "..", "..")) # exp REPO = os.path.dirname(EXP) PIPE = os.path.join(EXP, "pipeline") for p in (PIPE, os.path.join(EXP, "t3")): if p not in sys.path: sys.path.insert(0, p) os.environ.setdefault("FINEBENCH_ROUTE", "yt") # FineBench samples were drawn with the YouTube route # Off-cluster runs (exp/analysis/pool/REMOTE_README.md, HF dataset GMLRVigil/BenchCheck-Pool): POOL_BASE # replaces the cluster data root (the store / manifest / caches under it are optional for steps 1-3), # POOL_FRAMES_DIR points at the unpacked frame cache, POOL_RESULTS_ROOT at the items + step outputs. BASE = os.environ.get("POOL_BASE") or "/vast/projects/jgu32/lab/enxin/bench_exp" STORE = f"{BASE}/store" WORK = f"{BASE}/work" NORMALIZED = f"{STORE}/normalized" MANIFEST_JSONL = f"{BASE}/logs/manifest.jsonl" T3_FULL = f"{BASE}/t3_export_n1_fulltext/full" ITEMS_CACHE = f"{WORK}/pool_items_cache" EMB_DIR = f"{WORK}/pool_embeddings" FRAMES_DIR = os.environ.get("POOL_FRAMES_DIR") or f"{WORK}/pool_frames" LOG_DIR = f"{BASE}/logs" RESULTS = os.environ.get("POOL_RESULTS_ROOT") or os.path.join(EXP, "results", "pool") # override for smoke tests BASE_PARQUET = os.path.join(RESULTS, "pool_items_base.parquet") SCHEMA_MANIFEST = os.path.join(RESULTS, "pool_schema_manifest.csv") STEP0_KEPT = os.path.join(RESULTS, "step0_kept.parquet") STEP0_REMOVED = os.path.join(RESULTS, "step0_removed.jsonl") SCREEN_CSV = os.path.join(RESULTS, "screen_counts_full.csv") POOL_PARQUET = os.path.join(RESULTS, "pool_items.parquet") POOL_DUCKDB = os.path.join(RESULTS, "pool.duckdb") POOL_SUMMARY_MD = os.path.join(RESULTS, "pool_summary.md") POOL_SUMMARY_CSV = os.path.join(RESULTS, "pool_summary.csv") ACCOUNTING_CSV = os.path.join(RESULTS, "run_accounting.csv") VB_CSV = os.path.join(EXP, "video_benchmarks.csv") REGISTRY_CSV = os.path.join(REPO, "meta", "benchmark_registry.csv") SAMPLE_DIRS = [os.path.join(EXP, "data", "samples"), os.path.join(EXP, "data", "samples_n1")] HF_HUB = "/vast/projects/jgu32/lab/enxin/cache/hf/hub" MODELS = { # step -> (served model name, snapshot dir) "8b": ("Qwen/Qwen3-VL-8B-Instruct", f"{HF_HUB}/models--Qwen--Qwen3-VL-8B-Instruct/snapshots/0c351dd01ed87e9c1b53cbc748cba10e6187ff3b"), "2b": ("Qwen/Qwen3-VL-2B-Instruct", f"{HF_HUB}/models--Qwen--Qwen3-VL-2B-Instruct/snapshots/89644892e4d85e24eaac8bacfd4f463576704203"), } BGE_SNAPSHOT = f"{HF_HUB}/models--BAAI--bge-large-en-v1.5/snapshots/d4aa6901d3a41ba39fb536a557fa166f842b0e09" STEPS = {1: "blind", 2: "single_frame", 3: "v32_2b"} STEP_MODEL = {1: "8b", 2: "8b", 3: "2b"} STEP_DIR = {k: os.path.join(RESULTS, f"step{k}") for k in STEPS} SEED = 42 N_PERM = 4 LOG2 = math.log(2.0) LP_FLOOR = math.log(1e-6) # letter absent from the top-20 log-probs TOP_LOGPROBS = 20 MAX_OPTIONS = 26 # letters A..Z; more options -> format=open LETTERS = [chr(65 + i) for i in range(MAX_OPTIONS)] FRAME_LONG_SIDE = 448 N_FRAMES_V32 = 32 MID_POS = 16 # stage_p1_runner v_1: grid32[16] JPEG_QUALITY = 85 MAX_ERRORS_PER_ITEM = 3 # error rows before an item is treated as permanently failed # one prompt skeleton for all three steps (intro strings reused from stage_p1_runner) PROMPT = "{intro}\n\nQuestion: {q}\nOptions:\n{opts}\nAnswer with the option letter only." ASSISTANT_PREFIX = "Answer:" # continue_final_message -> the next token is the letter _TOKEN_LETTER = re.compile(r"^\s*[\(\[]?([A-Z])[\)\]\.:]?\s*$") def log(msg, tag="pool"): print(f"[{tag}] {time.strftime('%H:%M:%S')} {msg}", file=sys.stderr, flush=True) def ensure_dirs(): for d in (RESULTS, ITEMS_CACHE, EMB_DIR, FRAMES_DIR, LOG_DIR, *STEP_DIR.values()): os.makedirs(d, exist_ok=True) # ------------------------------------------------------------------ benches def bench_list(): """Stems of exp/data/samples/*.jsonl + exp/data/samples_n1/*.jsonl (139 onboarded).""" import glob names = set() for d in SAMPLE_DIRS: for p in glob.glob(os.path.join(d, "*.jsonl")): if os.path.exists(p): names.add(os.path.basename(p)[:-6]) return sorted(names) def sample_path(bench): for d in SAMPLE_DIRS: p = os.path.join(d, f"{bench}.jsonl") if os.path.exists(p): return p return None def read_jsonl(path): out = [] with open(path, encoding="utf-8") as f: for line in f: if line.strip(): try: out.append(json.loads(line)) except json.JSONDecodeError: continue # torn final line of a killed writer return out def key_of(ref): return f"{ref['repo']}::{ref.get('zip_path', '')}::{ref['member']}" def manifest_hashes(): """video_key -> content_hash for logs/manifest.jsonl status=done rows (last wins).""" m = {} if not os.path.exists(MANIFEST_JSONL): return m with open(MANIFEST_JSONL, encoding="utf-8") as f: for line in f: try: r = json.loads(line) except Exception: continue if r.get("status") == "done" and r.get("content_hash") and "::" in str(r.get("key", "")): m[r["key"]] = r["content_hash"] return m def key_video_id(key): return "k:" + hashlib.sha1(key.encode("utf-8")).hexdigest()[:16] def normalized_path(h): return f"{NORMALIZED}/{h}/video.mp4" def meta_of(h): try: return json.load(open(f"{NORMALIZED}/{h}/meta.json")) except Exception: return None # ------------------------------------------------------------------ options _SEQ_PREFIX = re.compile(r"^\s*[\(\[]?([A-Za-z])[\)\]\.:]\s*(.*)$", re.S) def strip_sequential_prefix(opts): """['A. x', 'B. y'] -> (['x', 'y'], True) when every option carries the letter of its position (A, B, C, ...); otherwise the list is returned unchanged.""" texts = [] for i, o in enumerate(opts): m = _SEQ_PREFIX.match(str(o)) if not m or m.group(1).upper() != chr(65 + i): return [str(o) for o in opts], False texts.append(m.group(2).strip()) return texts, True def render_options(texts): return "\n".join(f"{LETTERS[i]}. {t}" for i, t in enumerate(texts)) def item_text(question, options): """Text embedded for the near-duplicate check: question + options.""" q = " ".join(str(question or "").split()) if isinstance(options, list) and options: return q + "\n" + "\n".join(str(o) for o in options) return q def permutations_for(item_id, k, n_perm=N_PERM, seed=SEED): """TASK.md step 1: n_perm option shuffles, seed 42, per item. perm[j] = original option index shown at position j.""" rng = random.Random(f"{seed}|{item_id}") return [rng.sample(range(k), k) for _ in range(n_perm)] # ------------------------------------------------------------------ log-probs def letter_logprobs(top_logprobs, k): """top_logprobs: list of {token, logprob} for the first generated position. -> (lp list over the k presented letters, missing letters, matched variants). Tokenization variants ('A', ' A', '(A', 'A.') are merged by log-sum-exp.""" acc = {} variants = {} for e in top_logprobs or []: m = _TOKEN_LETTER.match(e.get("token") or "") if not m: continue L = m.group(1) if L not in acc: acc[L] = e["logprob"] else: a, b = acc[L], e["logprob"] acc[L] = max(a, b) + math.log1p(math.exp(-abs(a - b))) variants.setdefault(L, []).append(e.get("token")) lp, missing = [], [] for i in range(k): L = LETTERS[i] if L in acc: lp.append(float(acc[L])) else: lp.append(LP_FLOOR) missing.append(L) return lp, missing, variants def margin_of(lp, correct_pos): others = [v for i, v in enumerate(lp) if i != correct_pos] return lp[correct_pos] - (sum(others) / len(others) if others else 0.0) def argmax_pos(lp): best = max(lp) return lp.index(best) class ContextTooLong(Exception): pass def logprob_request(endpoint, model, prompt, images_b64=None, timeout=(10, 600)): """One forward: max_tokens=1, logprobs=true, top_logprobs=20; the assistant turn is prefilled with ASSISTANT_PREFIX (continue_final_message) so the next token is the letter. -> dict(top=[{token, logprob}], top1_token, prompt_tokens, latency_s).""" import requests content = [{"type": "image_url", "image_url": {"url": "data:image/jpeg;base64," + b}} for b in (images_b64 or [])] content.append({"type": "text", "text": prompt}) body = {"model": model, "temperature": 0.0, "max_tokens": 1, "logprobs": True, "top_logprobs": TOP_LOGPROBS, "messages": [{"role": "user", "content": content}, {"role": "assistant", "content": ASSISTANT_PREFIX}], "continue_final_message": True, "add_generation_prompt": False} t0 = time.time() r = requests.post(f"{endpoint}/chat/completions", json=body, timeout=timeout) if r.status_code == 400 and ("maximum" in r.text or "longer than" in r.text or "context length" in r.text): raise ContextTooLong(r.text[:200]) r.raise_for_status() d = r.json() ch = d["choices"][0] lpc = (ch.get("logprobs") or {}).get("content") or [] if not lpc: raise RuntimeError("no logprobs in response") top = [{"token": e.get("token"), "logprob": e.get("logprob")} for e in (lpc[0].get("top_logprobs") or [])] return dict(top=top, top1_token=lpc[0].get("token"), prompt_tokens=(d.get("usage") or {}).get("prompt_tokens", 0), latency_s=round(time.time() - t0, 4)) # ------------------------------------------------------------------ result files def bench_files(step, bench): """All jsonl files of a benchmark under step/ (part files included).""" d = STEP_DIR[step] if not os.path.isdir(d): return [] out = [] for f in os.listdir(d): if f == f"{bench}.jsonl" or (f.startswith(f"{bench}.p") and f.endswith(".jsonl") and f[len(bench) + 2:-6].isdigit()): out.append(os.path.join(d, f)) return sorted(out) def unit_file(step, bench, part, n_parts): return os.path.join(STEP_DIR[step], f"{bench}.jsonl" if n_parts == 1 else f"{bench}.p{part}.jsonl") def load_step_rows(step, benches=None): """item_id -> last successful row; plus item_id -> error count. Rows with status != ok are errors (never counted as done).""" ok, errs = {}, {} d = STEP_DIR[step] if not os.path.isdir(d): return ok, errs files = [] for f in sorted(os.listdir(d)): if not f.endswith(".jsonl"): continue if benches is not None: b = f[:-6] if "." in b and b.rsplit(".", 1)[1][1:].isdigit() and b.rsplit(".", 1)[1].startswith("p"): b = b.rsplit(".", 1)[0] if b not in benches: continue files.append(os.path.join(d, f)) for p in files: for r in read_jsonl(p): iid = r.get("item_id") if iid is None: continue if r.get("status", "ok") == "ok": ok[iid] = r else: errs[iid] = errs.get(iid, 0) + 1 return ok, errs def append_rows(path, rows): """Append json rows under an exclusive flock (several array tasks may touch a file across re-runs; the lock keeps rows whole).""" os.makedirs(os.path.dirname(path), exist_ok=True) data = "".join(json.dumps(r, ensure_ascii=False, default=str) + "\n" for r in rows) with open(path, "a", encoding="utf-8") as f: fcntl.flock(f, fcntl.LOCK_EX) try: f.write(data) f.flush() finally: fcntl.flock(f, fcntl.LOCK_UN) # ------------------------------------------------------------------ sharding def plan_units(work, max_unit=20000): """work: list of (bench, [item_ids sorted]) -> units [(bench, part, n_parts, ids)]. Big benchmarks are split into parts of <= max_unit items (deterministic by sorted item_id) so one array task never owns more than max_unit items of one file.""" units = [] for bench, ids in work: ids = sorted(ids) n_parts = max(1, math.ceil(len(ids) / max_unit)) if ids else 1 size = math.ceil(len(ids) / n_parts) if ids else 0 for part in range(n_parts): units.append((bench, part, n_parts, ids[part * size:(part + 1) * size])) return units def assign_units(units, n_tasks, task_id, weight=lambda u: len(u[3])): """Deterministic LPT (largest first to the least loaded task).""" loads = [0.0] * n_tasks mine = [] for u in sorted(units, key=lambda u: (-weight(u), u[0], u[1])): t = min(range(n_tasks), key=lambda i: (loads[i], i)) loads[t] += weight(u) if t == task_id: mine.append(u) return mine, loads def slurm_task(): """(task_id, n_tasks) from the Slurm array environment; (0, 1) outside Slurm.""" tid = int(os.environ.get("SLURM_ARRAY_TASK_ID", 0)) n = os.environ.get("SLURM_ARRAY_TASK_COUNT") if n is None: lo, hi = os.environ.get("SLURM_ARRAY_TASK_MIN"), os.environ.get("SLURM_ARRAY_TASK_MAX") n = int(hi) - int(lo) + 1 if lo is not None and hi is not None else 1 if lo is not None: tid -= int(lo) return tid, int(n)