Update README.md

README.md

@@ -40,33 +40,47 @@ human protein pairs interact directly or indirectly.
 
 ## Description of dataset files
   |-- **full**
-    |-- **humap3_full_feature_matrix_20220625.csv.gz**
+  
+    |-- humap3_full_feature_matrix_20220625.csv.gz
+    
       This is the full feature matrix that contains all 26 million proteins pairs that DirectContacts2 makes 
       predictions on and the 324 features from >25,000 proteomic mass spectrometry experiments. The feature 
       matrix was originally developed in hu.MAP3.0.
+      
   |-- **reference_interactions**
-    |-- **benchmark_test_INTRAandINTER_complex_NegativePairs_20250619.csv**
+  
+    |-- benchmark_test_INTRAandINTER_complex_NegativePairs_20250619.csv
+    
       These are the test set negatives that contains both intra- and inter-complex negative pairs. The file
       contains a pair of proteins (defined by UniProt acession) per line. The set of structures (PDBs) these
       interactions come from all have at least 5 subunits.
-    |-- **benchmark_test_IntraComplex_NegativePairs_pdbsize5_20240326.txt**
+      
+    |-- benchmark_test_IntraComplex_NegativePairs_pdbsize5_20240326.txt
+    
       These are the test set negatives that contain only intra-complex negative pairs and are the negatives used
       in the test feature matrix provided when reading in the test feature matrix using the *datasets* package.
       The other feature matrix is provided under this same directory (*reference_interactions). All PDBs that
       these interactions come from have at least 5 protein subunits. The file is structured with one pair of 
       proteins (defined by UniProt acession) per line.
-    |-- **benchmark_test_IntraComplex_PositivePairs_pdbsize5_20240326.txt**
+      
+    |-- benchmark_test_IntraComplex_PositivePairs_pdbsize5_20240326.txt
+    
       These are the test set positives, which are only intra-complex pairs. The PDB structures from which the 
       interactions are derived all have at least 5 subunits. The file is structured with one pair of 
       proteins (defined by UniProt acession) per line.
-    |-- **benchmark_train_INTERandINTRA_complex_NegativePairs_pdbsize3_20240326.txt**
+      
+    |-- benchmark_train_INTERandINTRA_complex_NegativePairs_pdbsize3_20240326.txt
+    
       These are the training set negatives, which contain both inter- and intra-complex pairs. The set of 
       structures (PDBs) these interactions come from all have at least 3 subunits. The file is structured with 
       one pair of proteins (defined by UniProt acession) per line.
-    |-- **benchmark_train_IntraComplex_PositivePairs_pdbsize3_20240326.txt**
+      
+    |-- benchmark_train_IntraComplex_PositivePairs_pdbsize3_20240326.txt
+    
       These are the test set positives, which are only intra-complex pairs. The PDB structures from which the 
       interactions are derived all have at least 3 subunits. The file is structured with one pair of 
       proteins (defined by UniProt acession) per line.
+      
   |-- **test**
     |-- **test_FeatureMatrix_pdbsize5_only_INTRA_complex_NegativePairs_20240326.csv.gz**
       This is the feature matrix for the test set of interactions.