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Upload Phase1_run_cfa.py with huggingface_hub
Browse files- Phase1_run_cfa.py +42 -0
Phase1_run_cfa.py
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import pandas as pd
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from semopy import Model, Optimizer
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# Load dataset
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df = pd.read_csv("phase1_clean.csv")
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# Extract all column names
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cols = df.columns.tolist()
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# Identify operator prefixes (everything before the underscore)
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operators = sorted(list(set([c.split("_")[0] for c in cols])))
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# Build CFA model dynamically
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model_lines = []
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for op in operators:
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items = sorted([c for c in cols if c.startswith(op + "_")])
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if len(items) > 0:
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line = f"{op.capitalize()} =~ " + " + ".join(items)
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model_lines.append(line)
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model_desc = "\n".join(model_lines)
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# Build model
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model = Model(model_desc)
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# IMPORTANT FOR OLD SEMOPY: load dataset BEFORE optimizer
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model.load_dataset(df)
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# Fit model
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opt = Optimizer(model)
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opt.optimize()
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# Extract loadings from parameter table (old semopy)
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params = model.parameters
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loadings = params[params["op"] == "~"]
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loadings.to_csv("cfa_loadings.csv", index=False)
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# Fit indices
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stats = model.calc_stats()
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pd.DataFrame([stats]).to_csv("cfa_fit_indices.csv", index=False)
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print("CFA completed successfully.")
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