Replace dataset with positive, negative, and unknown splits
Browse files- README.md +187 -0
- data/negative-00000-of-00001.parquet +3 -0
- data/positive-00000-of-00001.parquet +3 -0
- data/unknown-00000-of-00005.parquet +3 -0
- data/unknown-00001-of-00005.parquet +3 -0
- data/unknown-00002-of-00005.parquet +3 -0
- data/unknown-00003-of-00005.parquet +3 -0
- data/unknown-00004-of-00005.parquet +3 -0
README.md
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| 1 |
+
---
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| 2 |
+
dataset_info:
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| 3 |
+
features:
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| 4 |
+
- name: SNOOPPI_final_label
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| 5 |
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dtype: string
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| 6 |
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- name: MI0915_final_label
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| 7 |
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dtype: string
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| 8 |
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- name: SNOOPPI_Partner_A_ID
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| 9 |
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dtype: string
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| 10 |
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- name: SNOOPPI_Partner_B_ID
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| 11 |
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dtype: string
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| 12 |
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- name: SNOOPPI_Pair_ID
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| 13 |
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dtype: string
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| 14 |
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- name: SNOOPPI_Labeled_Pair_ID
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| 15 |
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dtype: string
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| 16 |
+
- name: seq_sort
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| 17 |
+
dtype: string
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| 18 |
+
- name: unique_interaction_mi_terms
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| 19 |
+
dtype: string
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| 20 |
+
- name: partner_A_sequence
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| 21 |
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dtype: string
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| 22 |
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- name: partner_B_sequence
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| 23 |
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dtype: string
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| 24 |
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- name: partner_A_length
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| 25 |
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dtype: string
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| 26 |
+
- name: partner_B_length
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| 27 |
+
dtype: string
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| 28 |
+
- name: partner_A_mol_type
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| 29 |
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dtype: string
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| 30 |
+
- name: partner_B_mol_type
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| 31 |
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dtype: string
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| 32 |
+
- name: intact_interaction_ids
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| 33 |
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dtype: string
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| 34 |
+
- name: n_intact_interaction_ids
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| 35 |
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dtype: string
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| 36 |
+
- name: partner_A_intact_interactor_ids
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| 37 |
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dtype: string
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| 38 |
+
- name: partner_B_intact_interactor_ids
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| 39 |
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dtype: string
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| 40 |
+
- name: partner_A_n_intact_interactor_ids
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| 41 |
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dtype: string
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| 42 |
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- name: partner_B_n_intact_interactor_ids
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| 43 |
+
dtype: string
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| 44 |
+
- name: partner_A_uniprot_ids
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| 45 |
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dtype: string
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| 46 |
+
- name: partner_B_uniprot_ids
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| 47 |
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dtype: string
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| 48 |
+
- name: partner_A_gene_names
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| 49 |
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dtype: string
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| 50 |
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- name: partner_B_gene_names
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| 51 |
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dtype: string
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| 52 |
+
- name: partner_A_species
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| 53 |
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dtype: string
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| 54 |
+
- name: partner_B_species
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| 55 |
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dtype: string
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| 56 |
+
- name: mi_scores_all
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| 57 |
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dtype: string
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| 58 |
+
- name: mi_score_mean
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| 59 |
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dtype: string
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| 60 |
+
- name: mi_score_min
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| 61 |
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dtype: string
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| 62 |
+
- name: mi_score_max
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| 63 |
+
dtype: string
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| 64 |
+
- name: assays_unique
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| 65 |
+
dtype: string
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| 66 |
+
- name: n_assays_unique
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| 67 |
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dtype: string
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| 68 |
+
- name: n_papers
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| 69 |
+
dtype: string
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| 70 |
+
- name: pubmed_ids
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| 71 |
+
dtype: string
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| 72 |
+
- name: publication_years_all
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| 73 |
+
dtype: string
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| 74 |
+
- name: publication_year_min
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| 75 |
+
dtype: string
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| 76 |
+
- name: publication_year_max
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| 77 |
+
dtype: string
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| 78 |
+
- name: feature_relationship_types
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| 79 |
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dtype: string
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| 80 |
+
- name: feature_relationship_summary
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| 81 |
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dtype: string
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| 82 |
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- name: has_mutation_relationship
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| 83 |
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dtype: string
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| 84 |
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- name: has_ptm_relationship
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| 85 |
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dtype: string
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| 86 |
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- name: has_binding_site_relationship
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| 87 |
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dtype: string
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| 88 |
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- name: partner_A_wildtype_sequence_if_feature_modified
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| 89 |
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dtype: string
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| 90 |
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- name: partner_B_wildtype_sequence_if_feature_modified
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| 91 |
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dtype: string
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| 92 |
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- name: wildtype_seq_sort_if_feature_modified
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| 93 |
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dtype: string
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| 94 |
+
- name: wildtype_SNOOPPI_final_label
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| 95 |
+
dtype: string
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| 96 |
+
- name: wildtype_MI0915_final_label
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| 97 |
+
dtype: string
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| 98 |
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- name: exact_sequence_pair_intact_label_summary
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| 99 |
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dtype: string
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| 100 |
+
- name: snooppi_label_transition_from_intact
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| 101 |
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dtype: string
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| 102 |
+
- name: seq_sort_origin_categories
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| 103 |
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dtype: string
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| 104 |
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- name: unique_expansions
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| 105 |
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dtype: string
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| 106 |
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- name: partner_A_go_terms
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| 107 |
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dtype: string
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| 108 |
+
- name: partner_B_go_terms
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| 109 |
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dtype: string
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| 110 |
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- name: partner_A_dip
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| 111 |
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dtype: string
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| 112 |
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- name: partner_B_dip
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| 113 |
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dtype: string
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| 114 |
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- name: partner_A_ensg
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| 115 |
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dtype: string
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| 116 |
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- name: partner_B_ensg
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| 117 |
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dtype: string
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| 118 |
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- name: partner_A_ense
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| 119 |
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dtype: string
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| 120 |
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- name: partner_B_ense
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| 121 |
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dtype: string
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| 122 |
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- name: partner_A_enst
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| 123 |
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dtype: string
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| 124 |
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- name: partner_B_enst
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| 125 |
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dtype: string
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| 126 |
+
- name: partner_A_interpro
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| 127 |
+
dtype: string
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| 128 |
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- name: partner_B_interpro
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| 129 |
+
dtype: string
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| 130 |
+
- name: partner_A_rcsb_pdb
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| 131 |
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dtype: string
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| 132 |
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- name: partner_B_rcsb_pdb
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| 133 |
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dtype: string
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| 134 |
+
- name: partner_A_reactome
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| 135 |
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dtype: string
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| 136 |
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- name: partner_B_reactome
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| 137 |
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dtype: string
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| 138 |
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- name: partner_A_host_context
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| 139 |
+
dtype: string
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| 140 |
+
- name: partner_B_host_context
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| 141 |
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dtype: string
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| 142 |
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- name: partner_A_sequence_snooppi_degree_by_label
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| 143 |
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dtype: string
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| 144 |
+
- name: partner_B_sequence_snooppi_degree_by_label
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| 145 |
+
dtype: string
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| 146 |
+
- name: partner_A_sequence_modified_role_counts
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| 147 |
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dtype: string
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| 148 |
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- name: partner_B_sequence_modified_role_counts
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| 149 |
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dtype: string
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| 150 |
+
- name: partner_A_sequence_partner_modified_role_counts
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| 151 |
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dtype: string
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| 152 |
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- name: partner_B_sequence_partner_modified_role_counts
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| 153 |
+
dtype: string
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| 154 |
+
- name: partner_A_gene_snooppi_degree_by_label
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| 155 |
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dtype: string
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| 156 |
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- name: partner_B_gene_snooppi_degree_by_label
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| 157 |
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dtype: string
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| 158 |
+
- name: partner_A_gene_modified_role_counts
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| 159 |
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dtype: string
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| 160 |
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- name: partner_B_gene_modified_role_counts
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| 161 |
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dtype: string
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| 162 |
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- name: partner_A_gene_partner_modified_role_counts
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| 163 |
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dtype: string
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| 164 |
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- name: partner_B_gene_partner_modified_role_counts
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| 165 |
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dtype: string
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| 166 |
+
splits:
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| 167 |
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- name: positive
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| 168 |
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num_bytes: 153392772
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| 169 |
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num_examples: 33625
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| 170 |
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- name: negative
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| 171 |
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num_bytes: 34725795
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| 172 |
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num_examples: 5378
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| 173 |
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- name: unknown
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| 174 |
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num_bytes: 4648675404
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| 175 |
+
num_examples: 835084
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| 176 |
+
download_size: 1460575565
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| 177 |
+
dataset_size: 4836793971
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| 178 |
+
configs:
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| 179 |
+
- config_name: default
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| 180 |
+
data_files:
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| 181 |
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- split: positive
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| 182 |
+
path: data/positive-*
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| 183 |
+
- split: negative
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| 184 |
+
path: data/negative-*
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| 185 |
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- split: unknown
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| 186 |
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path: data/unknown-*
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| 187 |
+
---
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data/negative-00000-of-00001.parquet
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:21694672c721c592b42af2b464c02c04cd16dce1027d8953b07f33f12f79f5bb
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| 3 |
+
size 11899042
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data/positive-00000-of-00001.parquet
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:5dbea543d4e425d25df99fa69650f1ba50c918f84a9a9d1b8bd7ce18cd7bbf7d
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| 3 |
+
size 64709871
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data/unknown-00000-of-00005.parquet
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:deacd1516abb0c8ee5ce131234e571118955b0f0528cd70df53e5411879aaef4
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| 3 |
+
size 369426927
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data/unknown-00001-of-00005.parquet
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:2b47adc7593d3e93b4d496497af506a412d7995f7b1ee9d768807b551a5b488c
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| 3 |
+
size 246086091
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data/unknown-00002-of-00005.parquet
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:0e8719362ac027bdd0ef64220adc7eeb69b62ee3e20e046fa53ea7585666bc58
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| 3 |
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size 238609777
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data/unknown-00003-of-00005.parquet
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version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:8c381d2a502afdb1fe43d4649f0de2ea25d3d7bad539049b082bdfc772905b07
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| 3 |
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size 241558926
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data/unknown-00004-of-00005.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:1e30255ecbdd3b4fc4495b7400dd4c8ab69c71de51e37c2c1b66950223d48bf0
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| 3 |
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size 288284931
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