metabolic model metadata

metabolic_models/models.json

@@ -0,0 +1,145 @@
+{
+  "breast_cancer": {
+    "metabolic_filename": "Breast_Cancer.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 6561,
+    "number of metabolites": 2919,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Genome-scale metabolic model of human breast cancer metabolism."
+  },
+  "colon_adenocarcinoma": {
+    "metabolic_filename": "Colon_Adenocarcinoma.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 6646,
+    "number of metabolites": 2872,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Genome-scale metabolic model of human colon adenocarcinoma metabolism."
+  },
+  "glioblastoma": {
+    "metabolic_filename": "Glioblastoma.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 6102,
+    "number of metabolites": 2460,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Genome-scale metabolic model of human glioblastoma metabolism."
+  },
+  "low_grade_glioma": {
+    "metabolic_filename": "Low_Grade_Glioma.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 5940,
+    "number of metabolites": 2460,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Genome-scale metabolic model of human low grade glioma metabolism."
+  },
+  "lung_adenocarcinoma": {
+    "metabolic_filename": "Lung_Adenocarcinoma.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 6145,
+    "number of metabolites": 2660,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Genome-scale metabolic model of human lung adenocarcinoma metabolism."
+  },
+  "lung_squamous_cell_carcinoma": {
+    "metabolic_filename": "Lung_Squamous_Cell_Carcinoma.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 6170,
+    "number of metabolites": 2606,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Genome-scale metabolic model of human lung squamous cell carcinoma metabolism."
+  },
+  "ovarian_cancer": {
+    "metabolic_filename": "Ovarian_Cancer.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 5668,
+    "number of metabolites": 2323,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Genome-scale metabolic model of human ovarian cancer metabolism."
+  },
+  "pancreatic_adenocarcinoma": {
+    "metabolic_filename": "Pancreatic_Adenocarcinoma.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 6129,
+    "number of metabolites": 2594,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Genome-scale metabolic model of human pancreatic adenocarcinoma metabolism."
+  },
+  "prostate_cancer": {
+    "metabolic_filename": "Prostate_Cancer.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 7541,
+    "number of metabolites": 3460,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Genome-scale metabolic model of human prostate cancer metabolism."
+  },
+  "skin_cutaneous_melanoma": {
+    "metabolic_filename": "Skin_Cutaneous_Melanoma.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 6342,
+    "number of metabolites": 2712,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Genome-scale metabolic model of human skin cutaneous melanoma metabolism."
+  },
+  "kidney_renal_clear_cell_carcinoma": {
+    "metabolic_filename": "Kidney_Renal_Clear_Cell_Carcinoma.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 7002,
+    "number of metabolites": 3043,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Genome-scale metabolic model of human kidney_renal_clear_cell_carcinoma metabolism."
+  },
+  "human_model": {
+    "metabolic_filename": "Generic_Human.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "human",
+    "organism": "Homo sapiens",
+    "number of reactions": 7002,
+    "number of metabolites": 2993,
+    "gene identifier type": "Ensemble gene id",
+    "description": "Curated generic human metabolic model."
+  },
+  "mouse_model": {
+    "metabolic_filename": "Mouse_model.mat",
+    "version": "1.1",
+    "format": "mat",
+    "repo_dir": "mouse",
+    "organism": "Mus musculus",
+    "number of reactions": 6942,
+    "number of metabolites": 2759,
+    "gene identifier type": "mouse gene symbols",
+    "description": "Genome-scale metabolic model of mouse metabolism."
+  }
+}