Upload folder using huggingface_hub

.gitattributes

@@ -324,3 +324,4 @@ rfnet23_fold5/wandb/offline-run-20260724_131408-u6vlhkc8/run-u6vlhkc8.wandb filt
 uhved23_fold1/wandb/offline-run-20260724_125829-c7kfm1k2/run-c7kfm1k2.wandb filter=lfs diff=lfs merge=lfs -text
 uhved23_fold3/wandb/offline-run-20260724_125829-pbrx65eq/run-pbrx65eq.wandb filter=lfs diff=lfs merge=lfs -text
 uhved23_fold5/wandb/offline-run-20260724_125858-of3h2ako/run-of3h2ako.wandb filter=lfs diff=lfs merge=lfs -text
+ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/run-0ov9gtnf.wandb filter=lfs diff=lfs merge=lfs -text

ims2trans23_fold1/checkpoints/best.pth

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:76ff477e6e7fa7619300e0baa8e9a852ffd34fcf0b34248b62dc2b35048b3a1e
+oid sha256:9609b171641d6790078a5f338188d81e517fa30c3b4dbfce2b8aa913e51accf4
 size 211106433

ims2trans23_fold1/checkpoints/final_weights_only.safetensors

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4f02c4b59d107d8614c7899a9d9d21183e792ab63a8e4c2946c8853d3c49f99b
+size 52718856

ims2trans23_fold1/checkpoints/model_last.pth

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:fe581aa945b076a4ac8660ff8495698a3bcca135092c63beec1e73615b61809f
+oid sha256:bd9efe530f74bbebe92560cee39b765da40b27667b2e4ea0ed91f6b37d20c331
 size 211171915

ims2trans23_fold1/wandb/debug-internal.log

@@ -1,11 +1,16 @@
-{"time":"2026-07-23T11:13:23.164130572+02:00","level":"INFO","msg":"wandb-core"}
-{"time":"2026-07-23T11:13:23.164308742+02:00","level":"INFO","msg":"stream: starting","core version":"0.26.1"}
-{"time":"2026-07-23T11:13:23.287551792+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
-{"time":"2026-07-23T11:13:23.287599499+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
-{"time":"2026-07-23T11:13:23.287642962+02:00","level":"INFO","msg":"stream: created new stream","id":"0ov9gtnf"}
-{"time":"2026-07-23T11:13:23.287926543+02:00","level":"INFO","msg":"handler: started"}
-{"time":"2026-07-23T11:13:23.288607366+02:00","level":"INFO","msg":"stream: started"}
-{"time":"2026-07-23T11:13:23.288624193+02:00","level":"INFO","msg":"writer: started","stream_id":"0ov9gtnf"}
-{"time":"2026-07-23T11:13:23.288695377+02:00","level":"INFO","msg":"sender: started"}
-{"time":"2026-07-23T11:13:23.321105485+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
-{"time":"2026-07-23T11:13:23.321134518+02:00","level":"WARN","msg":"runupserter: server does not expand metric globs but the x_server_side_expand_glob_metrics setting is set; ignoring"}
+{"time":"2026-07-24T11:23:55.742790718+02:00","level":"INFO","msg":"wandb-core"}
+{"time":"2026-07-24T11:23:55.744597123+02:00","level":"INFO","msg":"stream: starting","core version":"0.26.1"}
+{"time":"2026-07-24T11:23:55.863712094+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
+{"time":"2026-07-24T11:23:55.863744917+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
+{"time":"2026-07-24T11:23:55.863784721+02:00","level":"INFO","msg":"stream: created new stream","id":"0ov9gtnf"}
+{"time":"2026-07-24T11:23:55.863823527+02:00","level":"INFO","msg":"handler: started"}
+{"time":"2026-07-24T11:23:55.865788879+02:00","level":"INFO","msg":"stream: started"}
+{"time":"2026-07-24T11:23:55.865796652+02:00","level":"INFO","msg":"writer: started","stream_id":"0ov9gtnf"}
+{"time":"2026-07-24T11:23:55.865808625+02:00","level":"INFO","msg":"sender: started"}
+{"time":"2026-07-24T11:23:55.889479594+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
+{"time":"2026-07-24T11:23:55.889508255+02:00","level":"WARN","msg":"runupserter: server does not expand metric globs but the x_server_side_expand_glob_metrics setting is set; ignoring"}
+{"time":"2026-07-24T21:00:59.29461666+02:00","level":"INFO","msg":"handler: operation stats","stats":{}}
+{"time":"2026-07-24T21:00:59.333002631+02:00","level":"INFO","msg":"stream: finishing up"}
+{"time":"2026-07-24T21:00:59.333053705+02:00","level":"INFO","msg":"handler: closed"}
+{"time":"2026-07-24T21:00:59.3384269+02:00","level":"INFO","msg":"sender: closed"}
+{"time":"2026-07-24T21:00:59.338464117+02:00","level":"INFO","msg":"stream: all finished"}

ims2trans23_fold1/wandb/debug.log

@@ -1,19 +1,23 @@
-2026-07-23 11:13:22,891 INFO    MainThread:3931415 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
-2026-07-23 11:13:22,892 INFO    MainThread:3931415 [wandb_setup.py:_flush():81] Configure stats pid to 3931415
-2026-07-23 11:13:22,892 INFO    MainThread:3931415 [wandb_setup.py:_flush():81] Loading settings from environment variables
-2026-07-23 11:13:22,892 INFO    MainThread:3931415 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug.log
-2026-07-23 11:13:22,892 INFO    MainThread:3931415 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/logs/debug-internal.log
-2026-07-23 11:13:22,892 INFO    MainThread:3931415 [wandb_init.py:init():850] calling init triggers
-2026-07-23 11:13:22,892 INFO    MainThread:3931415 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_setup.py:_flush():81] Configure stats pid to 3963085
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_setup.py:_flush():81] Loading settings from environment variables
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/logs/debug.log
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/logs/debug-internal.log
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_init.py:init():850] calling init triggers
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
 config: {'input_dir': '/leonardo_scratch/large/userexternal/ocarpent/mimose/ims2trans-preprocessed', 'output_dir': '/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'IMS2Trans', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0016, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'IMS2TransLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'prm_weight': 1.0, 'dis_weight': 0.1, 'dis_temperature': 0.5, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
-2026-07-23 11:13:22,892 INFO    MainThread:3931415 [wandb_init.py:init():898] starting backend
-2026-07-23 11:13:23,153 INFO    MainThread:3931415 [wandb_init.py:init():913] sending inform_init request
-2026-07-23 11:13:23,289 INFO    MainThread:3931415 [wandb_init.py:init():918] backend started and connected
-2026-07-23 11:13:23,290 INFO    MainThread:3931415 [wandb_init.py:init():988] updated telemetry
-2026-07-23 11:13:23,318 INFO    MainThread:3931415 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
-2026-07-23 11:13:23,322 INFO    MainThread:3931415 [wandb_init.py:init():1056] starting run threads in backend
-2026-07-23 11:13:23,474 INFO    MainThread:3931415 [wandb_run.py:_console_start():2554] atexit reg
-2026-07-23 11:13:23,474 INFO    MainThread:3931415 [wandb_run.py:_redirect():2403] redirect: wrap_raw
-2026-07-23 11:13:23,474 INFO    MainThread:3931415 [wandb_run.py:_redirect():2472] Wrapping output streams.
-2026-07-23 11:13:23,474 INFO    MainThread:3931415 [wandb_run.py:_redirect():2495] Redirects installed.
-2026-07-23 11:13:23,478 INFO    MainThread:3931415 [wandb_init.py:init():1094] run started, returning control to user process
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_init.py:init():898] starting backend
+2026-07-24 11:23:55,734 INFO    MainThread:3963085 [wandb_init.py:init():913] sending inform_init request
+2026-07-24 11:23:55,867 INFO    MainThread:3963085 [wandb_init.py:init():918] backend started and connected
+2026-07-24 11:23:55,868 INFO    MainThread:3963085 [wandb_init.py:init():988] updated telemetry
+2026-07-24 11:23:55,887 INFO    MainThread:3963085 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
+2026-07-24 11:23:55,890 INFO    MainThread:3963085 [wandb_init.py:init():1056] starting run threads in backend
+2026-07-24 11:23:56,042 INFO    MainThread:3963085 [wandb_run.py:_console_start():2554] atexit reg
+2026-07-24 11:23:56,042 INFO    MainThread:3963085 [wandb_run.py:_redirect():2403] redirect: wrap_raw
+2026-07-24 11:23:56,042 INFO    MainThread:3963085 [wandb_run.py:_redirect():2472] Wrapping output streams.
+2026-07-24 11:23:56,042 INFO    MainThread:3963085 [wandb_run.py:_redirect():2495] Redirects installed.
+2026-07-24 11:23:56,046 INFO    MainThread:3963085 [wandb_init.py:init():1094] run started, returning control to user process
+2026-07-24 21:00:59,207 INFO    MainThread:3963085 [wandb_run.py:_finish():2321] finishing run MiMoSe/0ov9gtnf
+2026-07-24 21:00:59,289 INFO    MainThread:3963085 [wandb_run.py:_atexit_cleanup():2520] got exitcode: 0
+2026-07-24 21:00:59,290 INFO    MainThread:3963085 [wandb_run.py:_restore():2502] restore
+2026-07-24 21:00:59,290 INFO    MainThread:3963085 [wandb_run.py:_restore():2508] restore done

ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/files/config.yaml

@@ -68,45 +68,45 @@ _wandb:
           uuid: GPU-ac9db05a-cc5c-dd0a-c77e-9b7984ed1e2c
         cuda_version: '12.2'
         slurm:
-          job_user: ocarpent
-          nodeid: '0'
-          nodelist: lrdn0066
-          ntasks: '1'
-          cpus_on_node: '8'
-          mem_per_node: '102400'
           tres_per_task: cpu:8
-          localid: '0'
+          gpus_on_node: '1'
+          script_context: prolog_task
+          task_pid: '347066'
+          job_uid: '130158'
+          job_name: IMS2TRANS23_FOLD_1
           submit_host: login01.leonardo.local
-          job_id: '50016060'
-          cpus_per_task: '8'
-          procid: '0'
-          job_gpus: '0'
-          job_cpus_per_node: '8'
+          prio_process: '0'
+          localid: '0'
           cluster_name: leonardo
-          job_start_time: '1784623898'
+          procid: '0'
           job_nodelist: lrdn0066
-          conf: /var/spool/slurmd/conf-cache/slurm.conf
-          job_dependency: singleton
-          task_pid: '347066'
-          job_name: IMS2TRANS23_FOLD_1
-          job_gid: '25200'
-          script_context: prolog_task
           gtids: '0'
-          gpus_on_node: '1'
-          topology_addr: HeadSwitche.isw-L2-CELLG1.isw10300.lrdn0066
-          nnodes: '1'
-          job_end_time: '1784710304'
-          tasks_per_node: '1'
           submit_dir: /leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb
-          nprocs: '1'
-          jobid: '50016060'
-          job_num_nodes: '1'
-          job_account: iscrb_medsyn
-          job_uid: '130158'
+          mem_per_node: '102400'
           topology_addr_pattern: switch.switch.switch.node
-          prio_process: '0'
           job_qos: normal
+          cpus_per_task: '8'
+          jobid: '50016060'
+          job_num_nodes: '1'
+          tasks_per_node: '1'
+          conf: /var/spool/slurmd/conf-cache/slurm.conf
+          job_dependency: singleton
+          nodelist: lrdn0066
           job_partition: boost_usr_prod
+          nprocs: '1'
+          nodeid: '0'
+          job_cpus_per_node: '8'
+          job_gpus: '0'
+          nnodes: '1'
+          job_id: '50016060'
+          job_start_time: '1784623898'
+          job_user: ocarpent
+          ntasks: '1'
+          cpus_on_node: '8'
+          topology_addr: HeadSwitche.isw-L2-CELLG1.isw10300.lrdn0066
+          job_account: iscrb_medsyn
+          job_gid: '25200'
+          job_end_time: '1784710304'
         writer_id: r12yvidge2to62diqvzqg5k9bavtx9rl
 input_dir:
   desc: null

ims2trans23_fold1/wandb/offline-run-20260721_105202-0ov9gtnf/files/wandb-metadata.json

@@ -1 +1 @@
-{"os": "Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28", "python": "CPython 3.12.13", "started_at": "2026-07-21T08:52:02.086938Z", "args": ["train", "--config", "ims2trans_23.yaml", "--fold", "1", "--run-suffix", "fold1", "--seed", "0", "--try-resume"], "program": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose", "code_path": ".venv/bin/mimose", "code_path_local": ".venv/bin/mimose", "git": {"remote_url": "https://github.com/AImageLab-zip/MiMoSe", "commit": "5d9e40a5b68c8a3bc487255d683a15ad2d5836a1"}, "root": "/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1", "host": "lrdn0066.leonardo.local", "executable": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python", "cpu_count": 32, "cpu_count_logical": 32, "gpu_type": "NVIDIA A100-SXM-64GB", "gpu_count": 1, "disk": {"/": {"total": "12573614080", "used": "11914510336"}}, "memory": {"total": "539998437376"}, "gpu_nvidia": [{"name": "NVIDIA A100-SXM-64GB", "memory_total": "68719476736", "cuda_cores": 7936, "architecture": "Ampere", "uuid": "GPU-ac9db05a-cc5c-dd0a-c77e-9b7984ed1e2c"}], "cuda_version": "12.2", "slurm": {"job_user": "ocarpent", "nodeid": "0", "nodelist": "lrdn0066", "ntasks": "1", "cpus_on_node": "8", "mem_per_node": "102400", "tres_per_task": "cpu:8", "localid": "0", "submit_host": "login01.leonardo.local", "job_id": "50016060", "cpus_per_task": "8", "procid": "0", "job_gpus": "0", "job_cpus_per_node": "8", "cluster_name": "leonardo", "job_start_time": "1784623898", "job_nodelist": "lrdn0066", "conf": "/var/spool/slurmd/conf-cache/slurm.conf", "job_dependency": "singleton", "task_pid": "347066", "job_name": "IMS2TRANS23_FOLD_1", "job_gid": "25200", "script_context": "prolog_task", "gtids": "0", "gpus_on_node": "1", "topology_addr": "HeadSwitche.isw-L2-CELLG1.isw10300.lrdn0066", "nnodes": "1", "job_end_time": "1784710304", "tasks_per_node": "1", "submit_dir": "/leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb", "nprocs": "1", "jobid": "50016060", "job_num_nodes": "1", "job_account": "iscrb_medsyn", "job_uid": "130158", "topology_addr_pattern": "switch.switch.switch.node", "prio_process": "0", "job_qos": "normal", "job_partition": "boost_usr_prod"}, "writer_id": "r12yvidge2to62diqvzqg5k9bavtx9rl"}
+{"os": "Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28", "python": "CPython 3.12.13", "started_at": "2026-07-21T08:52:02.086938Z", "args": ["train", "--config", "ims2trans_23.yaml", "--fold", "1", "--run-suffix", "fold1", "--seed", "0", "--try-resume"], "program": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose", "code_path": ".venv/bin/mimose", "code_path_local": ".venv/bin/mimose", "git": {"remote_url": "https://github.com/AImageLab-zip/MiMoSe", "commit": "5d9e40a5b68c8a3bc487255d683a15ad2d5836a1"}, "root": "/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1", "host": "lrdn0066.leonardo.local", "executable": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python", "cpu_count": 32, "cpu_count_logical": 32, "gpu_type": "NVIDIA A100-SXM-64GB", "gpu_count": 1, "disk": {"/": {"total": "12573614080", "used": "11914510336"}}, "memory": {"total": "539998437376"}, "gpu_nvidia": [{"name": "NVIDIA A100-SXM-64GB", "memory_total": "68719476736", "cuda_cores": 7936, "architecture": "Ampere", "uuid": "GPU-ac9db05a-cc5c-dd0a-c77e-9b7984ed1e2c"}], "cuda_version": "12.2", "slurm": {"tres_per_task": "cpu:8", "gpus_on_node": "1", "script_context": "prolog_task", "task_pid": "347066", "job_uid": "130158", "job_name": "IMS2TRANS23_FOLD_1", "submit_host": "login01.leonardo.local", "prio_process": "0", "localid": "0", "cluster_name": "leonardo", "procid": "0", "job_nodelist": "lrdn0066", "gtids": "0", "submit_dir": "/leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb", "mem_per_node": "102400", "topology_addr_pattern": "switch.switch.switch.node", "job_qos": "normal", "cpus_per_task": "8", "jobid": "50016060", "job_num_nodes": "1", "tasks_per_node": "1", "conf": "/var/spool/slurmd/conf-cache/slurm.conf", "job_dependency": "singleton", "nodelist": "lrdn0066", "job_partition": "boost_usr_prod", "nprocs": "1", "nodeid": "0", "job_cpus_per_node": "8", "job_gpus": "0", "nnodes": "1", "job_id": "50016060", "job_start_time": "1784623898", "job_user": "ocarpent", "ntasks": "1", "cpus_on_node": "8", "topology_addr": "HeadSwitche.isw-L2-CELLG1.isw10300.lrdn0066", "job_account": "iscrb_medsyn", "job_gid": "25200", "job_end_time": "1784710304"}, "writer_id": "r12yvidge2to62diqvzqg5k9bavtx9rl"}

ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/files/config.yaml

@@ -69,45 +69,45 @@ _wandb:
           uuid: GPU-ac9db05a-cc5c-dd0a-c77e-9b7984ed1e2c
         cuda_version: '12.2'
         slurm:
-          job_user: ocarpent
-          nodeid: '0'
-          nodelist: lrdn0066
-          ntasks: '1'
-          cpus_on_node: '8'
           tres_per_task: cpu:8
-          mem_per_node: '102400'
-          localid: '0'
+          gpus_on_node: '1'
+          script_context: prolog_task
+          task_pid: '382260'
+          job_uid: '130158'
           procid: '0'
-          job_id: '50016068'
-          cpus_per_task: '8'
           submit_host: login01.leonardo.local
-          job_gpus: '0'
-          job_cpus_per_node: '8'
+          prio_process: '0'
+          localid: '0'
           cluster_name: leonardo
-          job_start_time: '1784710951'
-          conf: /var/spool/slurmd/conf-cache/slurm.conf
+          job_name: IMS2TRANS23_FOLD_1
           job_nodelist: lrdn0066
-          task_pid: '382260'
-          job_dependency: singleton
-          topology_addr: HeadSwitche.isw-L2-CELLG1.isw10300.lrdn0066
           gtids: '0'
-          script_context: prolog_task
-          gpus_on_node: '1'
-          job_name: IMS2TRANS23_FOLD_1
-          job_gid: '25200'
-          nnodes: '1'
-          job_end_time: '1784797354'
-          tasks_per_node: '1'
           submit_dir: /leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb
-          job_uid: '130158'
-          jobid: '50016068'
-          job_num_nodes: '1'
-          job_account: iscrb_medsyn
-          nprocs: '1'
-          prio_process: '0'
+          mem_per_node: '102400'
           topology_addr_pattern: switch.switch.switch.node
           job_qos: normal
+          cpus_per_task: '8'
+          jobid: '50016068'
+          job_num_nodes: '1'
+          tasks_per_node: '1'
+          nodelist: lrdn0066
+          job_dependency: singleton
+          conf: /var/spool/slurmd/conf-cache/slurm.conf
           job_partition: boost_usr_prod
+          job_cpus_per_node: '8'
+          nodeid: '0'
+          job_gpus: '0'
+          nprocs: '1'
+          nnodes: '1'
+          job_id: '50016068'
+          ntasks: '1'
+          job_user: ocarpent
+          job_start_time: '1784710951'
+          cpus_on_node: '8'
+          topology_addr: HeadSwitche.isw-L2-CELLG1.isw10300.lrdn0066
+          job_account: iscrb_medsyn
+          job_gid: '25200'
+          job_end_time: '1784797354'
         writer_id: lfpwvv74t2x10vhqaoxi2qwri4lo76mm
 input_dir:
   desc: null

ims2trans23_fold1/wandb/offline-run-20260722_110248-0ov9gtnf/files/wandb-metadata.json

@@ -1 +1 @@
-{"os": "Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28", "python": "CPython 3.12.13", "started_at": "2026-07-22T09:02:48.224690Z", "args": ["train", "--config", "ims2trans_23.yaml", "--fold", "1", "--run-suffix", "fold1", "--seed", "0", "--try-resume"], "program": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose", "code_path": ".venv/bin/mimose", "code_path_local": ".venv/bin/mimose", "git": {"remote_url": "https://github.com/AImageLab-zip/MiMoSe", "commit": "5d9e40a5b68c8a3bc487255d683a15ad2d5836a1"}, "root": "/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1", "host": "lrdn0066.leonardo.local", "executable": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python", "cpu_count": 32, "cpu_count_logical": 32, "gpu_type": "NVIDIA A100-SXM-64GB", "gpu_count": 1, "disk": {"/": {"total": "12573614080", "used": "11915567104"}}, "memory": {"total": "539998437376"}, "gpu_nvidia": [{"name": "NVIDIA A100-SXM-64GB", "memory_total": "68719476736", "cuda_cores": 7936, "architecture": "Ampere", "uuid": "GPU-ac9db05a-cc5c-dd0a-c77e-9b7984ed1e2c"}], "cuda_version": "12.2", "slurm": {"job_user": "ocarpent", "nodeid": "0", "nodelist": "lrdn0066", "ntasks": "1", "cpus_on_node": "8", "tres_per_task": "cpu:8", "mem_per_node": "102400", "localid": "0", "procid": "0", "job_id": "50016068", "cpus_per_task": "8", "submit_host": "login01.leonardo.local", "job_gpus": "0", "job_cpus_per_node": "8", "cluster_name": "leonardo", "job_start_time": "1784710951", "conf": "/var/spool/slurmd/conf-cache/slurm.conf", "job_nodelist": "lrdn0066", "task_pid": "382260", "job_dependency": "singleton", "topology_addr": "HeadSwitche.isw-L2-CELLG1.isw10300.lrdn0066", "gtids": "0", "script_context": "prolog_task", "gpus_on_node": "1", "job_name": "IMS2TRANS23_FOLD_1", "job_gid": "25200", "nnodes": "1", "job_end_time": "1784797354", "tasks_per_node": "1", "submit_dir": "/leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb", "job_uid": "130158", "jobid": "50016068", "job_num_nodes": "1", "job_account": "iscrb_medsyn", "nprocs": "1", "prio_process": "0", "topology_addr_pattern": "switch.switch.switch.node", "job_qos": "normal", "job_partition": "boost_usr_prod"}, "writer_id": "lfpwvv74t2x10vhqaoxi2qwri4lo76mm"}
+{"os": "Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28", "python": "CPython 3.12.13", "started_at": "2026-07-22T09:02:48.224690Z", "args": ["train", "--config", "ims2trans_23.yaml", "--fold", "1", "--run-suffix", "fold1", "--seed", "0", "--try-resume"], "program": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose", "code_path": ".venv/bin/mimose", "code_path_local": ".venv/bin/mimose", "git": {"remote_url": "https://github.com/AImageLab-zip/MiMoSe", "commit": "5d9e40a5b68c8a3bc487255d683a15ad2d5836a1"}, "root": "/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1", "host": "lrdn0066.leonardo.local", "executable": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python", "cpu_count": 32, "cpu_count_logical": 32, "gpu_type": "NVIDIA A100-SXM-64GB", "gpu_count": 1, "disk": {"/": {"total": "12573614080", "used": "11915567104"}}, "memory": {"total": "539998437376"}, "gpu_nvidia": [{"name": "NVIDIA A100-SXM-64GB", "memory_total": "68719476736", "cuda_cores": 7936, "architecture": "Ampere", "uuid": "GPU-ac9db05a-cc5c-dd0a-c77e-9b7984ed1e2c"}], "cuda_version": "12.2", "slurm": {"tres_per_task": "cpu:8", "gpus_on_node": "1", "script_context": "prolog_task", "task_pid": "382260", "job_uid": "130158", "procid": "0", "submit_host": "login01.leonardo.local", "prio_process": "0", "localid": "0", "cluster_name": "leonardo", "job_name": "IMS2TRANS23_FOLD_1", "job_nodelist": "lrdn0066", "gtids": "0", "submit_dir": "/leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb", "mem_per_node": "102400", "topology_addr_pattern": "switch.switch.switch.node", "job_qos": "normal", "cpus_per_task": "8", "jobid": "50016068", "job_num_nodes": "1", "tasks_per_node": "1", "nodelist": "lrdn0066", "job_dependency": "singleton", "conf": "/var/spool/slurmd/conf-cache/slurm.conf", "job_partition": "boost_usr_prod", "job_cpus_per_node": "8", "nodeid": "0", "job_gpus": "0", "nprocs": "1", "nnodes": "1", "job_id": "50016068", "ntasks": "1", "job_user": "ocarpent", "job_start_time": "1784710951", "cpus_on_node": "8", "topology_addr": "HeadSwitche.isw-L2-CELLG1.isw10300.lrdn0066", "job_account": "iscrb_medsyn", "job_gid": "25200", "job_end_time": "1784797354"}, "writer_id": "lfpwvv74t2x10vhqaoxi2qwri4lo76mm"}

ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/files/config.yaml

@@ -69,45 +69,45 @@ _wandb:
           uuid: GPU-6f2506a5-47f5-4d74-fc6f-3852ca681480
         cuda_version: '12.2'
         slurm:
-          job_user: ocarpent
-          nodeid: '0'
-          nodelist: lrdn0022
-          ntasks: '1'
-          cpus_on_node: '8'
           tres_per_task: cpu:8
-          mem_per_node: '102400'
+          gpus_on_node: '1'
+          script_context: prolog_task
+          task_pid: '3931410'
           localid: '0'
           procid: '0'
-          job_id: '50016069'
-          cpus_per_task: '8'
           submit_host: login01.leonardo.local
-          job_gpus: '2'
-          job_cpus_per_node: '8'
+          prio_process: '0'
+          submit_dir: /leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb
           cluster_name: leonardo
-          job_start_time: '1784797986'
-          conf: /var/spool/slurmd/conf-cache/slurm.conf
+          job_name: IMS2TRANS23_FOLD_1
           job_nodelist: lrdn0022
-          task_pid: '3931410'
-          job_dependency: singleton
-          topology_addr: HeadSwitche.isw-L2-CELLG1.isw10102.lrdn0022
           gtids: '0'
-          script_context: prolog_task
-          gpus_on_node: '1'
-          job_name: IMS2TRANS23_FOLD_1
-          job_gid: '25200'
-          nnodes: '1'
-          submit_dir: /leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb
-          tasks_per_node: '1'
-          job_end_time: '1784884388'
-          nprocs: '1'
-          jobid: '50016069'
-          job_num_nodes: '1'
           job_uid: '130158'
-          job_account: iscrb_medsyn
-          prio_process: '0'
+          mem_per_node: '102400'
           topology_addr_pattern: switch.switch.switch.node
           job_qos: normal
+          cpus_per_task: '8'
+          jobid: '50016069'
+          job_num_nodes: '1'
+          tasks_per_node: '1'
+          nodelist: lrdn0022
+          job_dependency: singleton
+          conf: /var/spool/slurmd/conf-cache/slurm.conf
           job_partition: boost_usr_prod
+          job_cpus_per_node: '8'
+          nodeid: '0'
+          nprocs: '1'
+          job_gpus: '2'
+          nnodes: '1'
+          job_id: '50016069'
+          job_start_time: '1784797986'
+          job_user: ocarpent
+          ntasks: '1'
+          cpus_on_node: '8'
+          topology_addr: HeadSwitche.isw-L2-CELLG1.isw10102.lrdn0022
+          job_account: iscrb_medsyn
+          job_gid: '25200'
+          job_end_time: '1784884388'
         writer_id: cnlu83fp02d7rf1aufxq7jla5zpe3x25
 input_dir:
   desc: null

ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/files/wandb-metadata.json

@@ -1 +1 @@
-{"os": "Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28", "python": "CPython 3.12.13", "started_at": "2026-07-23T09:13:22.884453Z", "args": ["train", "--config", "ims2trans_23.yaml", "--fold", "1", "--run-suffix", "fold1", "--seed", "0", "--try-resume"], "program": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose", "code_path": ".venv/bin/mimose", "code_path_local": ".venv/bin/mimose", "git": {"remote_url": "https://github.com/AImageLab-zip/MiMoSe", "commit": "5d9e40a5b68c8a3bc487255d683a15ad2d5836a1"}, "root": "/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1", "host": "lrdn0022.leonardo.local", "executable": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python", "cpu_count": 32, "cpu_count_logical": 32, "gpu_type": "NVIDIA A100-SXM-64GB", "gpu_count": 1, "disk": {"/": {"total": "12573614080", "used": "11974516736"}}, "memory": {"total": "539998437376"}, "gpu_nvidia": [{"name": "NVIDIA A100-SXM-64GB", "memory_total": "68719476736", "cuda_cores": 7936, "architecture": "Ampere", "uuid": "GPU-6f2506a5-47f5-4d74-fc6f-3852ca681480"}], "cuda_version": "12.2", "slurm": {"job_user": "ocarpent", "nodeid": "0", "nodelist": "lrdn0022", "ntasks": "1", "cpus_on_node": "8", "tres_per_task": "cpu:8", "mem_per_node": "102400", "localid": "0", "procid": "0", "job_id": "50016069", "cpus_per_task": "8", "submit_host": "login01.leonardo.local", "job_gpus": "2", "job_cpus_per_node": "8", "cluster_name": "leonardo", "job_start_time": "1784797986", "conf": "/var/spool/slurmd/conf-cache/slurm.conf", "job_nodelist": "lrdn0022", "task_pid": "3931410", "job_dependency": "singleton", "topology_addr": "HeadSwitche.isw-L2-CELLG1.isw10102.lrdn0022", "gtids": "0", "script_context": "prolog_task", "gpus_on_node": "1", "job_name": "IMS2TRANS23_FOLD_1", "job_gid": "25200", "nnodes": "1", "submit_dir": "/leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb", "tasks_per_node": "1", "job_end_time": "1784884388", "nprocs": "1", "jobid": "50016069", "job_num_nodes": "1", "job_uid": "130158", "job_account": "iscrb_medsyn", "prio_process": "0", "topology_addr_pattern": "switch.switch.switch.node", "job_qos": "normal", "job_partition": "boost_usr_prod"}, "writer_id": "cnlu83fp02d7rf1aufxq7jla5zpe3x25"}
+{"os": "Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28", "python": "CPython 3.12.13", "started_at": "2026-07-23T09:13:22.884453Z", "args": ["train", "--config", "ims2trans_23.yaml", "--fold", "1", "--run-suffix", "fold1", "--seed", "0", "--try-resume"], "program": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose", "code_path": ".venv/bin/mimose", "code_path_local": ".venv/bin/mimose", "git": {"remote_url": "https://github.com/AImageLab-zip/MiMoSe", "commit": "5d9e40a5b68c8a3bc487255d683a15ad2d5836a1"}, "root": "/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1", "host": "lrdn0022.leonardo.local", "executable": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python", "cpu_count": 32, "cpu_count_logical": 32, "gpu_type": "NVIDIA A100-SXM-64GB", "gpu_count": 1, "disk": {"/": {"total": "12573614080", "used": "11974516736"}}, "memory": {"total": "539998437376"}, "gpu_nvidia": [{"name": "NVIDIA A100-SXM-64GB", "memory_total": "68719476736", "cuda_cores": 7936, "architecture": "Ampere", "uuid": "GPU-6f2506a5-47f5-4d74-fc6f-3852ca681480"}], "cuda_version": "12.2", "slurm": {"tres_per_task": "cpu:8", "gpus_on_node": "1", "script_context": "prolog_task", "task_pid": "3931410", "localid": "0", "procid": "0", "submit_host": "login01.leonardo.local", "prio_process": "0", "submit_dir": "/leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb", "cluster_name": "leonardo", "job_name": "IMS2TRANS23_FOLD_1", "job_nodelist": "lrdn0022", "gtids": "0", "job_uid": "130158", "mem_per_node": "102400", "topology_addr_pattern": "switch.switch.switch.node", "job_qos": "normal", "cpus_per_task": "8", "jobid": "50016069", "job_num_nodes": "1", "tasks_per_node": "1", "nodelist": "lrdn0022", "job_dependency": "singleton", "conf": "/var/spool/slurmd/conf-cache/slurm.conf", "job_partition": "boost_usr_prod", "job_cpus_per_node": "8", "nodeid": "0", "nprocs": "1", "job_gpus": "2", "nnodes": "1", "job_id": "50016069", "job_start_time": "1784797986", "job_user": "ocarpent", "ntasks": "1", "cpus_on_node": "8", "topology_addr": "HeadSwitche.isw-L2-CELLG1.isw10102.lrdn0022", "job_account": "iscrb_medsyn", "job_gid": "25200", "job_end_time": "1784884388"}, "writer_id": "cnlu83fp02d7rf1aufxq7jla5zpe3x25"}

ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/files/wandb-summary.json

@@ -1 +1 @@
-{"_runtime": 35646.177732735, "train/fusedice": 0.17558213330190117, "train/prmdice": 1.3561231215065772, "lr": 0.0005251437254180065, "_timestamp": 1784833649.5002213, "_step": 119, "epoch": 710, "train/fusecross": 0.03147480312153834, "train/prmcross": 0.15178645422699255, "train/dis": 7.489678194763464, "train/loss": 2.4639343515448613, "val/dice": 0.8020562679122237, "val/etpp_hd95": 16.49515832873381, "val/loss": 0.25985812109708784, "val/tc": 0.8269607848823234, "val/et": 0.7031150630266323, "val/wt_hd95": 6.30747551842937, "val/et_hd95": 9.279646875523092, "val/tc_hd95": 7.1991870698222105, "val/wt": 0.8760929558277155, "val/etpp": 0.7006329083891278}
+{"_runtime": 86274.278612184, "train/fusedice": 0.15420163607378617, "train/prmdice": 1.2752489890527288, "lr": 0.00023556580494550047, "_timestamp": 1784884277.6011794, "_step": 290, "epoch": 881, "train/fusecross": 0.028875547649185044, "train/prmcross": 0.14228185908783467, "train/dis": 7.521245733313604, "train/loss": 2.3527326255763343, "val/dice": 0.8098125370347021, "val/etpp_hd95": 26.224586481271828, "val/loss": 0.2524807640016079, "val/tc": 0.8274461239576819, "val/et": 0.7146365479240866, "val/wt_hd95": 6.1628065178688365, "val/et_hd95": 14.092614797842847, "val/tc_hd95": 9.15428484169208, "val/wt": 0.887354939222338, "val/etpp": 0.7120770614947076}

ims2trans23_fold1/wandb/offline-run-20260723_111322-0ov9gtnf/run-0ov9gtnf.wandb

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:6347c85adf690cad7624ae72fd3c89269a371ce2708ad605fb3c9260b2a35476
-size 2228224
+oid sha256:f66aafcb5ce1c3381b4ef59e1a79ce2e682458ecbf75e1a52916d57439f04894
+size 5242880

ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/files/config.yaml

@@ -0,0 +1,215 @@
+wandb_version: 1
+
+_wandb:
+  desc: null
+  value:
+    python_version: 3.12.13
+    cli_version: 0.26.1
+    framework: torch
+    is_jupyter_run: false
+    is_kaggle_kernel: false
+    start_time: 1784885035
+    t:
+      1:
+      - 1
+      - 49
+      2:
+      - 1
+      - 49
+      3:
+      - 4
+      - 13
+      - 14
+      - 16
+      - 37
+      - 42
+      4: 3.12.13
+      5: 0.26.1
+      13: linux-x86_64
+    e:
+      mueak39py8mc4e8rp9l9olouz4lw5c5u:
+        os: Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28
+        python: CPython 3.12.13
+        started_at: '2026-07-24T09:23:55.464959Z'
+        args:
+        - train
+        - --config
+        - ims2trans_23.yaml
+        - --fold
+        - '1'
+        - --run-suffix
+        - fold1
+        - --seed
+        - '0'
+        - --try-resume
+        program: /leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose
+        code_path: .venv/bin/mimose
+        code_path_local: .venv/bin/mimose
+        git:
+          remote_url: https://github.com/AImageLab-zip/MiMoSe
+          commit: 5d9e40a5b68c8a3bc487255d683a15ad2d5836a1
+        root: /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1
+        host: lrdn0022.leonardo.local
+        executable: /leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python
+        cpu_count: 32
+        cpu_count_logical: 32
+        gpu_type: NVIDIA A100-SXM-64GB
+        gpu_count: 1
+        disk:
+          /:
+            total: '12573614080'
+            used: '11986632704'
+        memory:
+          total: '539998437376'
+        gpu_nvidia:
+        - name: NVIDIA A100-SXM-64GB
+          memory_total: '68719476736'
+          cuda_cores: 7936
+          architecture: Ampere
+          uuid: GPU-6f2506a5-47f5-4d74-fc6f-3852ca681480
+        cuda_version: '12.2'
+        slurm:
+          tres_per_task: cpu:8
+          gpus_on_node: '1'
+          script_context: prolog_task
+          task_pid: '3963080'
+          localid: '0'
+          procid: '0'
+          submit_host: login01.leonardo.local
+          prio_process: '0'
+          submit_dir: /leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb
+          cluster_name: leonardo
+          job_name: IMS2TRANS23_FOLD_1
+          job_nodelist: lrdn0022
+          gtids: '0'
+          job_uid: '130158'
+          mem_per_node: '102400'
+          topology_addr_pattern: switch.switch.switch.node
+          job_qos: normal
+          cpus_per_task: '8'
+          jobid: '50016080'
+          job_num_nodes: '1'
+          tasks_per_node: '1'
+          nodelist: lrdn0022
+          job_dependency: singleton
+          conf: /var/spool/slurmd/conf-cache/slurm.conf
+          job_partition: boost_usr_prod
+          nprocs: '1'
+          job_gpus: '2'
+          nodeid: '0'
+          job_cpus_per_node: '8'
+          nnodes: '1'
+          job_id: '50016080'
+          job_start_time: '1784885020'
+          job_user: ocarpent
+          ntasks: '1'
+          cpus_on_node: '8'
+          topology_addr: HeadSwitche.isw-L2-CELLG1.isw10102.lrdn0022
+          job_account: iscrb_medsyn
+          job_gid: '25200'
+          job_end_time: '1784971422'
+        writer_id: mueak39py8mc4e8rp9l9olouz4lw5c5u
+input_dir:
+  desc: null
+  value: /leonardo_scratch/large/userexternal/ocarpent/mimose/ims2trans-preprocessed
+output_dir:
+  desc: null
+  value: /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1
+num_epochs:
+  desc: null
+  value: 1000
+validation_every:
+  desc: null
+  value: 10
+batch_size:
+  desc: null
+  value: 8
+num_workers:
+  desc: null
+  value: 8
+fp16:
+  desc: null
+  value: true
+compile:
+  desc: null
+  value: false
+seed:
+  desc: null
+  value: 0
+custom_trainer_kwargs:
+  desc: null
+  value:
+    iter_per_epoch: null
+    region_fusion_start_epoch: 0
+    patch_size: 128
+    debug: false
+    transform_kind: imfuse
+    train_masking_mode: random
+    val_masking_mode: validation
+    split_file: /leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json
+    fold: 1
+model_class:
+  desc: null
+  value: IMS2Trans
+model_kwargs:
+  desc: null
+  value:
+    num_cls: 4
+optimizer_class:
+  desc: null
+  value: Adam
+optimizer:
+  desc: null
+  value:
+    lr: 0.0016
+    weight_decay: 0.0001
+    betas:
+    - 0.9
+    - 0.999
+    momentum: null
+    eps: 1.0e-08
+loss_class:
+  desc: null
+  value: IMS2TransLoss
+loss_kwargs:
+  desc: null
+  value:
+    num_classes: null
+    fuse_weight: 1.0
+    prm_weight: 1.0
+    dis_weight: 0.1
+    dis_temperature: 0.5
+    eps: 0.001
+    log_clamp_min: 0.005
+scheduler_class:
+  desc: null
+  value: PolynomialLR
+scheduler_kwargs:
+  desc: null
+  value:
+    total_iters: 1000
+    power: 0.9
+dataset_type:
+  desc: null
+  value: BRATS23
+iter_per_epoch:
+  desc: null
+  value: null
+region_fusion_start_epoch:
+  desc: null
+  value: 0
+patch_size:
+  desc: null
+  value: 128
+debug:
+  desc: null
+  value: false
+train_masking_mode:
+  desc: null
+  value: RANDOM
+val_masking_mode:
+  desc: null
+  value: VALIDATION
+split_file:
+  desc: null
+  value: /leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json

ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/files/requirements.txt

@@ -0,0 +1,95 @@
+timm==1.0.22
+MarkupSafe==3.0.3
+httpcore==1.0.9
+wandb==0.26.1
+pydantic_core==2.46.3
+shellingham==1.5.4
+platformdirs==4.9.6
+MedPy==0.5.2
+click==8.3.3
+contourpy==1.3.3
+safetensors==0.7.0
+Pygments==2.20.0
+filelock==3.29.0
+torch==2.9.1
+GitPython==3.1.49
+pydantic==2.13.3
+sympy==1.14.0
+numpy==2.4.4
+rich==15.0.0
+hf-xet==1.4.3
+scipy==1.17.1
+h5py==3.16.0
+psutil==7.2.2
+ninja==1.13.0
+nvidia-cusparselt-cu12==0.7.1
+certifi==2026.4.22
+nvidia-cuda-nvrtc-cu12==12.8.93
+fsspec==2026.4.0
+tqdm==4.67.3
+charset-normalizer==3.4.7
+openpyxl==3.1.5
+typer==0.25.0
+dynamic_network_architectures==0.4.3
+pandas==3.0.2
+smmap==5.0.3
+torchvision==0.24.1
+pillow==12.2.0
+anyio==4.13.0
+matplotlib==3.10.9
+nvidia-cusolver-cu12==11.7.3.90
+nvidia-cudnn-cu12==9.10.2.21
+scikit-learn==1.8.0
+annotated-doc==0.0.4
+six==1.17.0
+einops==0.8.2
+threadpoolctl==3.6.0
+fonttools==4.62.1
+packaging==26.2
+et_xmlfile==2.0.0
+httpx==0.28.1
+requests==2.33.1
+urllib3==2.6.3
+nvidia-cufile-cu12==1.13.1.3
+python-dateutil==2.9.0.post0
+ptflops==0.7.5
+kiwisolver==1.5.0
+mpmath==1.3.0
+huggingface_hub==1.13.0
+nvidia-nvjitlink-cu12==12.8.93
+annotated-types==0.7.0
+nvidia-curand-cu12==10.3.9.90
+nvidia-nvshmem-cu12==3.3.20
+thop==0.1.1-2209072238
+protobuf==6.33.6
+simpleitk==2.5.4
+nvidia-cuda-cupti-cu12==12.8.90
+Jinja2==3.1.6
+nvidia-cuda-runtime-cu12==12.8.90
+MiMoSe==0.0.2
+setuptools==82.0.1
+joblib==1.5.3
+nodeocc==1.0.26
+mdurl==0.1.2
+typing_extensions==4.15.0
+cycler==0.12.1
+wheel==0.47.0
+PyYAML==6.0.3
+idna==3.13
+triton==3.5.1
+wcwidth==0.6.0
+nvidia-cublas-cu12==12.8.4.1
+typing-inspection==0.4.2
+nvidia-cufft-cu12==11.3.3.83
+gitdb==4.0.12
+nvidia-cusparse-cu12==12.5.8.93
+ttkbootstrap==1.20.2
+pyparsing==3.3.2
+nvidia-nccl-cu12==2.27.5
+networkx==3.6.1
+h11==0.16.0
+sentry-sdk==2.58.0
+nvidia-nvtx-cu12==12.8.90
+markdown-it-py==4.0.0
+prompt_toolkit==3.0.52
+MiMoSe==0.0.2

ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/files/wandb-metadata.json

@@ -0,0 +1 @@
+{"os": "Linux-4.18.0-477.27.1.el8_8.x86_64-x86_64-with-glibc2.28", "python": "CPython 3.12.13", "started_at": "2026-07-24T09:23:55.464959Z", "args": ["train", "--config", "ims2trans_23.yaml", "--fold", "1", "--run-suffix", "fold1", "--seed", "0", "--try-resume"], "program": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/mimose", "code_path": ".venv/bin/mimose", "code_path_local": ".venv/bin/mimose", "git": {"remote_url": "https://github.com/AImageLab-zip/MiMoSe", "commit": "5d9e40a5b68c8a3bc487255d683a15ad2d5836a1"}, "root": "/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1", "host": "lrdn0022.leonardo.local", "executable": "/leonardo/home/userexternal/ocarpent/MiMoSe/.venv/bin/python", "cpu_count": 32, "cpu_count_logical": 32, "gpu_type": "NVIDIA A100-SXM-64GB", "gpu_count": 1, "disk": {"/": {"total": "12573614080", "used": "11986632704"}}, "memory": {"total": "539998437376"}, "gpu_nvidia": [{"name": "NVIDIA A100-SXM-64GB", "memory_total": "68719476736", "cuda_cores": 7936, "architecture": "Ampere", "uuid": "GPU-6f2506a5-47f5-4d74-fc6f-3852ca681480"}], "cuda_version": "12.2", "slurm": {"tres_per_task": "cpu:8", "gpus_on_node": "1", "script_context": "prolog_task", "task_pid": "3963080", "localid": "0", "procid": "0", "submit_host": "login01.leonardo.local", "prio_process": "0", "submit_dir": "/leonardo_work/IscrB_MEDSYN/mimose/runs/rfnet23_fold3/wandb", "cluster_name": "leonardo", "job_name": "IMS2TRANS23_FOLD_1", "job_nodelist": "lrdn0022", "gtids": "0", "job_uid": "130158", "mem_per_node": "102400", "topology_addr_pattern": "switch.switch.switch.node", "job_qos": "normal", "cpus_per_task": "8", "jobid": "50016080", "job_num_nodes": "1", "tasks_per_node": "1", "nodelist": "lrdn0022", "job_dependency": "singleton", "conf": "/var/spool/slurmd/conf-cache/slurm.conf", "job_partition": "boost_usr_prod", "nprocs": "1", "job_gpus": "2", "nodeid": "0", "job_cpus_per_node": "8", "nnodes": "1", "job_id": "50016080", "job_start_time": "1784885020", "job_user": "ocarpent", "ntasks": "1", "cpus_on_node": "8", "topology_addr": "HeadSwitche.isw-L2-CELLG1.isw10102.lrdn0022", "job_account": "iscrb_medsyn", "job_gid": "25200", "job_end_time": "1784971422"}, "writer_id": "mueak39py8mc4e8rp9l9olouz4lw5c5u"}

ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/files/wandb-summary.json

@@ -0,0 +1 @@
+{"_runtime": 12505.965610562, "train/fusedice": 0.15307160364378483, "train/prmcross": 0.13651253242011463, "train/prmdice": 1.2620332416044462, "lr": 0.0001536131979272272, "_step": 42, "epoch": 926, "train/dis": 7.433406283002381, "_timestamp": 1784897541.8561664, "train/loss": 2.322873375831394, "train/fusecross": 0.027915372889181344, "val/et": 0.7057114922394145, "val/etpp": 0.7001915446958811, "val/wt": 0.8885126650333444, "val/tc": 0.8150481763259573, "val/dice": 0.8030907778662387, "val/wt_hd95": 7.834521285051301, "val/tc_hd95": 11.204896094642987, "val/et_hd95": 16.35942532799378, "val/etpp_hd95": 31.504765113198264, "val/loss": 0.25335822804272173}

ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/logs/debug-core.log

@@ -0,0 +1,48 @@
+{"time":"2026-07-24T11:23:55.569568349+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmpqtsjni_r/port-3963085.txt","pid":3963085,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
+{"time":"2026-07-24T11:23:55.56993545+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":3963085}
+{"time":"2026-07-24T11:23:55.569929288+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-3963085-3963119-2931923452/socket","Net":"unix"}}
+{"time":"2026-07-24T11:23:55.606051278+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmpe_um9ib9/port-275052.txt","pid":275052,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
+{"time":"2026-07-24T11:23:55.607436867+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":275052}
+{"time":"2026-07-24T11:23:55.607384672+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-275052-275084-2195803249/socket","Net":"unix"}}
+{"time":"2026-07-24T11:23:55.734598933+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
+{"time":"2026-07-24T11:23:55.742104412+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"0ov9gtnf","id":"1(@)"}
+{"time":"2026-07-24T11:23:55.772714692+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
+{"time":"2026-07-24T11:23:55.780112592+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"8vhh0y12","id":"1(@)"}
+{"time":"2026-07-24T11:23:55.803647858+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmpt7sapopo/port-1706083.txt","pid":1706083,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
+{"time":"2026-07-24T11:23:55.804716602+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":1706083}
+{"time":"2026-07-24T11:23:55.804701767+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-1706083-1706115-622470424/socket","Net":"unix"}}
+{"time":"2026-07-24T11:23:55.865804941+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"0ov9gtnf","id":"1(@)"}
+{"time":"2026-07-24T11:23:55.902684573+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"8vhh0y12","id":"1(@)"}
+{"time":"2026-07-24T11:23:55.969232166+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
+{"time":"2026-07-24T11:23:55.976856087+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"p0fvk16c","id":"1(@)"}
+{"time":"2026-07-24T11:23:56.099737752+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"p0fvk16c","id":"1(@)"}
+{"time":"2026-07-24T20:52:23.260170571+02:00","level":"INFO","msg":"handleInformFinish: finish message received","streamId":"8vhh0y12","id":"1(@)"}
+{"time":"2026-07-24T20:52:23.315966111+02:00","level":"INFO","msg":"handleInformFinish: stream closed","streamId":"8vhh0y12","id":"1(@)"}
+{"time":"2026-07-24T20:52:23.368893373+02:00","level":"INFO","msg":"handleInformTeardown: server teardown initiated","id":"1(@)"}
+{"time":"2026-07-24T20:52:23.369312403+02:00","level":"INFO","msg":"server is shutting down"}
+{"time":"2026-07-24T20:52:23.36889345+02:00","level":"INFO","msg":"connection: closing","id":"1(@)"}
+{"time":"2026-07-24T20:52:23.369537134+02:00","level":"INFO","msg":"connection: closed successfully","id":"1(@)"}
+{"time":"2026-07-24T20:52:23.369247521+02:00","level":"INFO","msg":"handleInformTeardown: server shutdown complete","id":"1(@)"}
+{"time":"2026-07-24T20:52:23.369844594+02:00","level":"INFO","msg":"connection: ManageConnectionData: connection closed","id":"1(@)"}
+{"time":"2026-07-24T20:52:23.370215216+02:00","level":"INFO","msg":"server: listener closed","addr":{"Name":"/tmp/wandb-275052-275084-2195803249/socket","Net":"unix"}}
+{"time":"2026-07-24T20:52:23.370889212+02:00","level":"INFO","msg":"server is closed"}
+{"time":"2026-07-24T20:59:49.458080609+02:00","level":"INFO","msg":"handleInformFinish: finish message received","streamId":"p0fvk16c","id":"1(@)"}
+{"time":"2026-07-24T20:59:49.512998694+02:00","level":"INFO","msg":"handleInformFinish: stream closed","streamId":"p0fvk16c","id":"1(@)"}
+{"time":"2026-07-24T20:59:49.554566168+02:00","level":"INFO","msg":"handleInformTeardown: server teardown initiated","id":"1(@)"}
+{"time":"2026-07-24T20:59:49.554556281+02:00","level":"INFO","msg":"connection: closing","id":"1(@)"}
+{"time":"2026-07-24T20:59:49.554651202+02:00","level":"INFO","msg":"connection: closed successfully","id":"1(@)"}
+{"time":"2026-07-24T20:59:49.554618584+02:00","level":"INFO","msg":"handleInformTeardown: server shutdown complete","id":"1(@)"}
+{"time":"2026-07-24T20:59:49.554673844+02:00","level":"INFO","msg":"connection: ManageConnectionData: connection closed","id":"1(@)"}
+{"time":"2026-07-24T20:59:49.554625547+02:00","level":"INFO","msg":"server is shutting down"}
+{"time":"2026-07-24T20:59:49.555610231+02:00","level":"INFO","msg":"server: listener closed","addr":{"Name":"/tmp/wandb-1706083-1706115-622470424/socket","Net":"unix"}}
+{"time":"2026-07-24T20:59:49.556454503+02:00","level":"INFO","msg":"server is closed"}
+{"time":"2026-07-24T21:00:59.301777311+02:00","level":"INFO","msg":"handleInformFinish: finish message received","streamId":"0ov9gtnf","id":"1(@)"}
+{"time":"2026-07-24T21:00:59.343923294+02:00","level":"INFO","msg":"handleInformFinish: stream closed","streamId":"0ov9gtnf","id":"1(@)"}
+{"time":"2026-07-24T21:00:59.410818515+02:00","level":"INFO","msg":"handleInformTeardown: server teardown initiated","id":"1(@)"}
+{"time":"2026-07-24T21:00:59.410808082+02:00","level":"INFO","msg":"connection: closing","id":"1(@)"}
+{"time":"2026-07-24T21:00:59.410914356+02:00","level":"INFO","msg":"connection: closed successfully","id":"1(@)"}
+{"time":"2026-07-24T21:00:59.410871634+02:00","level":"INFO","msg":"handleInformTeardown: server shutdown complete","id":"1(@)"}
+{"time":"2026-07-24T21:00:59.410932723+02:00","level":"INFO","msg":"connection: ManageConnectionData: connection closed","id":"1(@)"}
+{"time":"2026-07-24T21:00:59.410878366+02:00","level":"INFO","msg":"server is shutting down"}
+{"time":"2026-07-24T21:00:59.410976545+02:00","level":"INFO","msg":"server: listener closed","addr":{"Name":"/tmp/wandb-3963085-3963119-2931923452/socket","Net":"unix"}}
+{"time":"2026-07-24T21:00:59.411008595+02:00","level":"INFO","msg":"server is closed"}

ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/logs/debug-internal.log

@@ -0,0 +1,16 @@
+{"time":"2026-07-24T11:23:55.742790718+02:00","level":"INFO","msg":"wandb-core"}
+{"time":"2026-07-24T11:23:55.744597123+02:00","level":"INFO","msg":"stream: starting","core version":"0.26.1"}
+{"time":"2026-07-24T11:23:55.863712094+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
+{"time":"2026-07-24T11:23:55.863744917+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
+{"time":"2026-07-24T11:23:55.863784721+02:00","level":"INFO","msg":"stream: created new stream","id":"0ov9gtnf"}
+{"time":"2026-07-24T11:23:55.863823527+02:00","level":"INFO","msg":"handler: started"}
+{"time":"2026-07-24T11:23:55.865788879+02:00","level":"INFO","msg":"stream: started"}
+{"time":"2026-07-24T11:23:55.865796652+02:00","level":"INFO","msg":"writer: started","stream_id":"0ov9gtnf"}
+{"time":"2026-07-24T11:23:55.865808625+02:00","level":"INFO","msg":"sender: started"}
+{"time":"2026-07-24T11:23:55.889479594+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
+{"time":"2026-07-24T11:23:55.889508255+02:00","level":"WARN","msg":"runupserter: server does not expand metric globs but the x_server_side_expand_glob_metrics setting is set; ignoring"}
+{"time":"2026-07-24T21:00:59.29461666+02:00","level":"INFO","msg":"handler: operation stats","stats":{}}
+{"time":"2026-07-24T21:00:59.333002631+02:00","level":"INFO","msg":"stream: finishing up"}
+{"time":"2026-07-24T21:00:59.333053705+02:00","level":"INFO","msg":"handler: closed"}
+{"time":"2026-07-24T21:00:59.3384269+02:00","level":"INFO","msg":"sender: closed"}
+{"time":"2026-07-24T21:00:59.338464117+02:00","level":"INFO","msg":"stream: all finished"}

ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/logs/debug.log

@@ -0,0 +1,23 @@
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_setup.py:_flush():81] Configure stats pid to 3963085
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_setup.py:_flush():81] Loading settings from environment variables
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/logs/debug.log
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/logs/debug-internal.log
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_init.py:init():850] calling init triggers
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
+config: {'input_dir': '/leonardo_scratch/large/userexternal/ocarpent/mimose/ims2trans-preprocessed', 'output_dir': '/leonardo_work/IscrB_MEDSYN/mimose/runs/ims2trans23_fold1', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'IMS2Trans', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0016, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'IMS2TransLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'prm_weight': 1.0, 'dis_weight': 0.1, 'dis_temperature': 0.5, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9}, 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/leonardo/home/userexternal/ocarpent/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
+2026-07-24 11:23:55,476 INFO    MainThread:3963085 [wandb_init.py:init():898] starting backend
+2026-07-24 11:23:55,734 INFO    MainThread:3963085 [wandb_init.py:init():913] sending inform_init request
+2026-07-24 11:23:55,867 INFO    MainThread:3963085 [wandb_init.py:init():918] backend started and connected
+2026-07-24 11:23:55,868 INFO    MainThread:3963085 [wandb_init.py:init():988] updated telemetry
+2026-07-24 11:23:55,887 INFO    MainThread:3963085 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
+2026-07-24 11:23:55,890 INFO    MainThread:3963085 [wandb_init.py:init():1056] starting run threads in backend
+2026-07-24 11:23:56,042 INFO    MainThread:3963085 [wandb_run.py:_console_start():2554] atexit reg
+2026-07-24 11:23:56,042 INFO    MainThread:3963085 [wandb_run.py:_redirect():2403] redirect: wrap_raw
+2026-07-24 11:23:56,042 INFO    MainThread:3963085 [wandb_run.py:_redirect():2472] Wrapping output streams.
+2026-07-24 11:23:56,042 INFO    MainThread:3963085 [wandb_run.py:_redirect():2495] Redirects installed.
+2026-07-24 11:23:56,046 INFO    MainThread:3963085 [wandb_init.py:init():1094] run started, returning control to user process
+2026-07-24 21:00:59,207 INFO    MainThread:3963085 [wandb_run.py:_finish():2321] finishing run MiMoSe/0ov9gtnf
+2026-07-24 21:00:59,289 INFO    MainThread:3963085 [wandb_run.py:_atexit_cleanup():2520] got exitcode: 0
+2026-07-24 21:00:59,290 INFO    MainThread:3963085 [wandb_run.py:_restore():2502] restore
+2026-07-24 21:00:59,290 INFO    MainThread:3963085 [wandb_run.py:_restore():2508] restore done

ims2trans23_fold1/wandb/offline-run-20260724_112355-0ov9gtnf/run-0ov9gtnf.wandb

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:dcbccf30a9e6a332435fd60769d07a2bb4004bb1d5143399aefa650b4ebf97a6
+size 2094337