scPTR / src /scptr /tools /data /known_rbps.csv
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gene_symbol,organism,description
ELAVL1,human,AU-rich element RNA-binding protein 1 (HuR)
ELAVL2,human,ELAV-like protein 2 (HuB)
ELAVL3,human,ELAV-like protein 3 (HuC)
ELAVL4,human,ELAV-like protein 4 (HuD)
HNRNPA1,human,Heterogeneous nuclear ribonucleoprotein A1
HNRNPA2B1,human,Heterogeneous nuclear ribonucleoprotein A2/B1
HNRNPC,human,Heterogeneous nuclear ribonucleoprotein C
HNRNPD,human,Heterogeneous nuclear ribonucleoprotein D (AUF1)
HNRNPF,human,Heterogeneous nuclear ribonucleoprotein F
HNRNPH1,human,Heterogeneous nuclear ribonucleoprotein H1
HNRNPK,human,Heterogeneous nuclear ribonucleoprotein K
HNRNPL,human,Heterogeneous nuclear ribonucleoprotein L
HNRNPM,human,Heterogeneous nuclear ribonucleoprotein M
HNRNPU,human,Heterogeneous nuclear ribonucleoprotein U
RBFOX1,human,RNA binding fox-1 homolog 1
RBFOX2,human,RNA binding fox-1 homolog 2
RBFOX3,human,RNA binding fox-1 homolog 3 (NeuN)
RBM3,human,RNA-binding motif protein 3
RBM4,human,RNA-binding motif protein 4
RBM5,human,RNA-binding motif protein 5
RBM10,human,RNA-binding motif protein 10
RBM15,human,RNA-binding motif protein 15
RBM20,human,RNA-binding motif protein 20
RBM24,human,RNA-binding motif protein 24
RBM25,human,RNA-binding motif protein 25
RBM38,human,RNA-binding motif protein 38 (RNPC1)
RBM39,human,RNA-binding motif protein 39
RBM47,human,RNA-binding motif protein 47
SRSF1,human,Serine/arginine-rich splicing factor 1
SRSF2,human,Serine/arginine-rich splicing factor 2
SRSF3,human,Serine/arginine-rich splicing factor 3
SRSF4,human,Serine/arginine-rich splicing factor 4
SRSF5,human,Serine/arginine-rich splicing factor 5
SRSF6,human,Serine/arginine-rich splicing factor 6
SRSF7,human,Serine/arginine-rich splicing factor 7
SRSF9,human,Serine/arginine-rich splicing factor 9
SRSF10,human,Serine/arginine-rich splicing factor 10
SRSF11,human,Serine/arginine-rich splicing factor 11
TRA2A,human,Transformer-2 protein homolog alpha
TRA2B,human,Transformer-2 protein homolog beta
PTBP1,human,Polypyrimidine tract-binding protein 1
PTBP2,human,Polypyrimidine tract-binding protein 2
PTBP3,human,Polypyrimidine tract-binding protein 3
PCBP1,human,Poly(rC)-binding protein 1
PCBP2,human,Poly(rC)-binding protein 2
PCBP3,human,Poly(rC)-binding protein 3
PCBP4,human,Poly(rC)-binding protein 4
IGF2BP1,human,Insulin-like growth factor 2 mRNA-binding protein 1
IGF2BP2,human,Insulin-like growth factor 2 mRNA-binding protein 2
IGF2BP3,human,Insulin-like growth factor 2 mRNA-binding protein 3
FMR1,human,Fragile X mental retardation protein 1
FXR1,human,Fragile X mental retardation protein autosomal homolog 1
FXR2,human,Fragile X mental retardation protein autosomal homolog 2
MBNL1,human,Muscleblind-like protein 1
MBNL2,human,Muscleblind-like protein 2
MBNL3,human,Muscleblind-like protein 3
CELF1,human,CUGBP Elav-like family member 1
CELF2,human,CUGBP Elav-like family member 2
CELF4,human,CUGBP Elav-like family member 4
CELF5,human,CUGBP Elav-like family member 5
CELF6,human,CUGBP Elav-like family member 6
QKI,human,Quaking homolog KH domain RNA binding
KHDRBS1,human,KH domain-containing RNA-binding signal transduction-associated protein 1 (Sam68)
KHDRBS2,human,KH domain-containing signal transduction-associated protein 2
KHDRBS3,human,KH domain-containing signal transduction-associated protein 3
KHSRP,human,KH-type splicing regulatory protein (FUBP2)
TIA1,human,T-cell-restricted intracellular antigen-1
TIAL1,human,TIA1 cytotoxic granule-associated RNA-binding protein-like 1
ZFP36,human,Zinc finger protein 36 (Tristetraprolin TTP)
ZFP36L1,human,Zinc finger protein 36 C3H type-like 1
ZFP36L2,human,Zinc finger protein 36 C3H type-like 2
CPEB1,human,Cytoplasmic polyadenylation element-binding protein 1
CPEB2,human,Cytoplasmic polyadenylation element-binding protein 2
CPEB3,human,Cytoplasmic polyadenylation element-binding protein 3
CPEB4,human,Cytoplasmic polyadenylation element-binding protein 4
PUM1,human,Pumilio RNA-binding family member 1
PUM2,human,Pumilio RNA-binding family member 2
STAU1,human,Staufen double-stranded RNA-binding protein 1
STAU2,human,Staufen double-stranded RNA-binding protein 2
UPF1,human,Up-frameshift suppressor 1 (Rent1)
UPF2,human,Up-frameshift suppressor 2 (Rent2)
UPF3B,human,Up-frameshift suppressor 3B
SMG1,human,SMG1 nonsense mediated mRNA decay associated PI3K
DIS3,human,DIS3 homolog exosome endoribonuclease and 3'-5' exoribonuclease
DIS3L2,human,DIS3-like exonuclease 2
XRN1,human,5'-3' exoribonuclease 1
XRN2,human,5'-3' exoribonuclease 2
EXOSC10,human,Exosome component 10
CNOT1,human,CCR4-NOT transcription complex subunit 1
CNOT6,human,CCR4-NOT transcription complex subunit 6
CNOT7,human,CCR4-NOT transcription complex subunit 7
PABPC1,human,Poly(A)-binding protein cytoplasmic 1
PABPC4,human,Poly(A)-binding protein cytoplasmic 4
PABPN1,human,Poly(A)-binding protein nuclear 1
MSI1,human,Musashi RNA-binding protein 1
MSI2,human,Musashi RNA-binding protein 2
LIN28A,human,Lin-28 homolog A
LIN28B,human,Lin-28 homolog B
AGO1,human,Argonaute RISC catalytic component 1
AGO2,human,Argonaute RISC catalytic component 2
AGO3,human,Argonaute RISC catalytic component 3
AGO4,human,Argonaute RISC catalytic component 4
DROSHA,human,Drosha ribonuclease III
DICER1,human,Dicer 1 ribonuclease III
DGCR8,human,DiGeorge syndrome critical region gene 8
ADAR,human,Adenosine deaminase RNA specific
ADARB1,human,Adenosine deaminase RNA specific B1 (ADAR2)
APOBEC1,human,Apolipoprotein B mRNA editing enzyme catalytic subunit 1
CPSF1,human,Cleavage and polyadenylation specificity factor subunit 1
CPSF2,human,Cleavage and polyadenylation specificity factor subunit 2
CPSF3,human,Cleavage and polyadenylation specificity factor subunit 3
CPSF4,human,Cleavage and polyadenylation specificity factor subunit 4
CSTF1,human,Cleavage stimulation factor subunit 1
CSTF2,human,Cleavage stimulation factor subunit 2
CSTF3,human,Cleavage stimulation factor subunit 3
NUDT21,human,Nudix hydrolase 21 (CFIm25)
FIP1L1,human,Factor interacting with PAPOLA and CPSF1
METTL3,human,Methyltransferase 3 N6-adenosine-methyltransferase
METTL14,human,Methyltransferase 14 N6-adenosine-methyltransferase
WTAP,human,Wilms tumor 1-associating protein
YTHDF1,human,YTH N6-methyladenosine RNA-binding protein 1
YTHDF2,human,YTH N6-methyladenosine RNA-binding protein 2
YTHDF3,human,YTH N6-methyladenosine RNA-binding protein 3
YTHDC1,human,YTH domain-containing protein 1
YTHDC2,human,YTH domain-containing protein 2
ALKBH5,human,AlkB homolog 5 RNA demethylase
FTO,human,Fat mass and obesity-associated protein (m6A demethylase)
EWSR1,human,EWS RNA-binding protein 1
FUS,human,Fused in sarcoma RNA-binding protein
TAF15,human,TATA-box binding protein associated factor 15
TARDBP,human,TAR DNA-binding protein 43 (TDP-43)
MATR3,human,Matrin 3
SFPQ,human,Splicing factor proline and glutamine rich
NONO,human,Non-POU domain-containing octamer-binding protein
ESRP1,human,Epithelial splicing regulatory protein 1
ESRP2,human,Epithelial splicing regulatory protein 2
NOVA1,human,NOVA alternative splicing regulator 1
NOVA2,human,NOVA alternative splicing regulator 2
SRRM4,human,Serine/arginine repetitive matrix protein 4 (nSR100)
U2AF1,human,U2 small nuclear RNA auxiliary factor 1
U2AF2,human,U2 small nuclear RNA auxiliary factor 2
SF3B1,human,Splicing factor 3b subunit 1
PRPF8,human,Pre-mRNA processing factor 8
SNRNP200,human,Small nuclear ribonucleoprotein U5 subunit 200
DDX3X,human,DEAD-box helicase 3 X-linked
DDX5,human,DEAD-box helicase 5
DDX6,human,DEAD-box helicase 6
DDX17,human,DEAD-box helicase 17
DDX39B,human,DEAD-box helicase 39B
DHX9,human,DExH-box helicase 9
EIF4A1,human,Eukaryotic translation initiation factor 4A1
EIF4E,human,Eukaryotic translation initiation factor 4E
EIF4G1,human,Eukaryotic translation initiation factor 4G1
LARP1,human,La ribonucleoprotein 1 translational regulator
LARP4,human,La ribonucleoprotein 4
LARP6,human,La ribonucleoprotein 6
LARP7,human,La ribonucleoprotein 7
NCL,human,Nucleolin
NPM1,human,Nucleophosmin 1
YBX1,human,Y-box binding protein 1
YBX3,human,Y-box binding protein 3
CCAR2,human,Cell cycle and apoptosis regulator 2
RC3H1,human,Ring finger and CCCH-type domains 1 (Roquin-1)
RC3H2,human,Ring finger and CCCH-type domains 2 (Roquin-2)
ZC3H12A,human,Zinc finger CCCH-type containing 12A (Regnase-1)
ZC3H12D,human,Zinc finger CCCH-type containing 12D
ZC3H14,human,Zinc finger CCCH-type containing 14
CNBP,human,CCHC-type zinc finger nucleic acid binding protein
PPIG,human,Peptidylprolyl isomerase G
AUH,human,AU RNA-binding methylglutaconyl-CoA hydratase
SYNCRIP,human,Synaptotagmin binding cytoplasmic RNA interacting protein
TRNAU1AP,human,tRNA selenocysteine 1 associated protein 1
TNRC6A,human,Trinucleotide repeat-containing gene 6A (GW182)
TNRC6B,human,Trinucleotide repeat-containing gene 6B
TNRC6C,human,Trinucleotide repeat-containing gene 6C
NXF1,human,Nuclear RNA export factor 1
THOC5,human,THO complex subunit 5
SMNDC1,human,Survival motor neuron domain-containing 1
SNRPA,human,Small nuclear ribonucleoprotein polypeptide A
RBM22,human,RNA-binding motif protein 22
CIRBP,human,Cold-inducible RNA-binding protein
HNRNPA0,human,Heterogeneous nuclear ribonucleoprotein A0
G3BP1,human,G3BP stress granule assembly factor 1
G3BP2,human,G3BP stress granule assembly factor 2
TARBP2,human,TARBP2 subunit of RISC loading complex
PRKRA,human,Protein activator of interferon-induced protein kinase EIF2AK2
Elavl1,mouse,AU-rich element RNA-binding protein 1 (HuR)
Elavl2,mouse,ELAV-like protein 2 (HuB)
Elavl3,mouse,ELAV-like protein 3 (HuC)
Elavl4,mouse,ELAV-like protein 4 (HuD)
Hnrnpa1,mouse,Heterogeneous nuclear ribonucleoprotein A1
Hnrnpa2b1,mouse,Heterogeneous nuclear ribonucleoprotein A2/B1
Hnrnpc,mouse,Heterogeneous nuclear ribonucleoprotein C
Hnrnpd,mouse,Heterogeneous nuclear ribonucleoprotein D (AUF1)
Rbfox1,mouse,RNA binding fox-1 homolog 1
Rbfox2,mouse,RNA binding fox-1 homolog 2
Rbfox3,mouse,RNA binding fox-1 homolog 3 (NeuN)
Mbnl1,mouse,Muscleblind-like protein 1
Mbnl2,mouse,Muscleblind-like protein 2
Celf1,mouse,CUGBP Elav-like family member 1
Celf2,mouse,CUGBP Elav-like family member 2
Qki,mouse,Quaking homolog KH domain RNA binding
Ptbp1,mouse,Polypyrimidine tract-binding protein 1
Ptbp2,mouse,Polypyrimidine tract-binding protein 2
Igf2bp1,mouse,Insulin-like growth factor 2 mRNA-binding protein 1
Igf2bp2,mouse,Insulin-like growth factor 2 mRNA-binding protein 2
Igf2bp3,mouse,Insulin-like growth factor 2 mRNA-binding protein 3
Fmr1,mouse,Fragile X mental retardation protein 1
Msi1,mouse,Musashi RNA-binding protein 1
Msi2,mouse,Musashi RNA-binding protein 2
Lin28a,mouse,Lin-28 homolog A
Lin28b,mouse,Lin-28 homolog B
Zfp36,mouse,Zinc finger protein 36 (Tristetraprolin TTP)
Zfp36l1,mouse,Zinc finger protein 36 C3H type-like 1
Zfp36l2,mouse,Zinc finger protein 36 C3H type-like 2
Tia1,mouse,T-cell-restricted intracellular antigen-1
Tial1,mouse,TIA1 cytotoxic granule-associated RNA-binding protein-like 1
Cpeb1,mouse,Cytoplasmic polyadenylation element-binding protein 1
Cpeb4,mouse,Cytoplasmic polyadenylation element-binding protein 4
Pum1,mouse,Pumilio RNA-binding family member 1
Pum2,mouse,Pumilio RNA-binding family member 2
Nova1,mouse,NOVA alternative splicing regulator 1
Nova2,mouse,NOVA alternative splicing regulator 2
Esrp1,mouse,Epithelial splicing regulatory protein 1
Esrp2,mouse,Epithelial splicing regulatory protein 2
Khdrbs1,mouse,KH domain-containing RNA-binding signal transduction-associated protein 1 (Sam68)
Srsf1,mouse,Serine/arginine-rich splicing factor 1
Srsf3,mouse,Serine/arginine-rich splicing factor 3
Tra2b,mouse,Transformer-2 protein homolog beta
Ago2,mouse,Argonaute RISC catalytic component 2
Mettl3,mouse,Methyltransferase 3 N6-adenosine-methyltransferase
Mettl14,mouse,Methyltransferase 14 N6-adenosine-methyltransferase
Ythdf2,mouse,YTH N6-methyladenosine RNA-binding protein 2
Alkbh5,mouse,AlkB homolog 5 RNA demethylase
Fto,mouse,Fat mass and obesity-associated protein (m6A demethylase)
Tardbp,mouse,TAR DNA-binding protein 43 (TDP-43)
Fus,mouse,Fused in sarcoma RNA-binding protein
Matr3,mouse,Matrin 3
Ybx1,mouse,Y-box binding protein 1
Ddx6,mouse,DEAD-box helicase 6
Stau1,mouse,Staufen double-stranded RNA-binding protein 1
Stau2,mouse,Staufen double-stranded RNA-binding protein 2
Upf1,mouse,Up-frameshift suppressor 1 (Rent1)
Cnot1,mouse,CCR4-NOT transcription complex subunit 1
Xrn1,mouse,5'-3' exoribonuclease 1
Dis3l2,mouse,DIS3-like exonuclease 2
Cirbp,mouse,Cold-inducible RNA-binding protein
Rbm3,mouse,RNA-binding motif protein 3