File size: 1,484 Bytes
9d901ad | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 | """Smoke tests for plotting functions."""
import matplotlib
matplotlib.use("Agg")
import pytest
def test_phase_portrait(analyzed_adata):
import scptr
gene = analyzed_adata.var_names[0]
fig = scptr.pl.phase_portrait(analyzed_adata, gene, show=False)
assert fig is not None
def test_gamma_heatmap(analyzed_adata):
import scptr
fig = scptr.pl.gamma_heatmap(analyzed_adata, show=False)
assert fig is not None
def test_gamma_violin(analyzed_adata):
import scptr
gene = analyzed_adata.var_names[0]
fig = scptr.pl.gamma_violin(analyzed_adata, gene, show=False)
assert fig is not None
def test_pt_umap(analyzed_adata):
import scptr
fig = scptr.pl.pt_umap(analyzed_adata, show=False)
assert fig is not None
def test_pt_comparison(analyzed_adata):
import scptr
fig = scptr.pl.pt_comparison(analyzed_adata, show=False)
assert fig is not None
def test_tf_ptf_scatter(analyzed_adata):
import scptr
fig = scptr.pl.tf_ptf_scatter(analyzed_adata, show=False)
assert fig is not None
def test_pt_velocity_embedding(analyzed_adata):
import scptr
scptr.tl.pt_velocity(analyzed_adata)
fig = scptr.pl.pt_velocity_embedding(analyzed_adata, show=False)
assert fig is not None
def test_pt_velocity_stream(analyzed_adata):
import scptr
scptr.tl.pt_velocity(analyzed_adata)
fig = scptr.pl.pt_velocity_stream(analyzed_adata, grid_size=20, show=False)
assert fig is not None
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