| model: | |
| name: OpenFold | |
| package_path: ../model/openfold | |
| base_dependency: OneScience | |
| runtime: | |
| pythonpath: ../model | |
| onescience_root_env: ONESCIENCE_ROOT | |
| default_config_preset: model_1_ptm | |
| device: cuda:0 | |
| train: | |
| data_dir: ../data/mmcif | |
| alignment_dir: ../data/alignments | |
| template_mmcif_dir: ../data/templates/mmcif | |
| output_dir: ../outputs/train | |
| checkpoint_dir: ../weight | |
| deepspeed_config: ./deepspeed_config.json | |
| inference: | |
| fasta_dir: ../data/fasta | |
| template_mmcif_dir: ../data/templates/mmcif | |
| precomputed_alignment_dir: ../data/alignments | |
| output_dir: ../outputs/inference | |
| checkpoint_path: ../weight/openfold.pt |