| import ctypes |
| import logging |
| import os |
| import random |
| import sys |
| import sysconfig |
| import time |
| from pathlib import Path |
|
|
|
|
| def preload_python_shared_library(): |
| """Make libpython visible to native extensions loaded with ctypes.""" |
| libdir = sysconfig.get_config_var("LIBDIR") |
| version = sysconfig.get_config_var("VERSION") |
| if not libdir or not version: |
| return |
|
|
| candidates = [ |
| Path(libdir) / f"libpython{version}.so.1.0", |
| Path(libdir) / f"libpython{version}.so", |
| ] |
| for libpython in candidates: |
| if libpython.exists(): |
| ctypes.CDLL(str(libpython), mode=ctypes.RTLD_GLOBAL) |
| return |
|
|
|
|
| preload_python_shared_library() |
|
|
| import numpy as np |
| import torch |
| import torch.nn as nn |
| import torch.distributed as dist |
| from torch.nn.parallel import DistributedDataParallel |
| from tqdm import tqdm |
|
|
| |
| root_path = Path(__file__).parent.parent |
| sys.path.insert(0, str(root_path)) |
|
|
| from model.graphViT import GraphViT |
| from onescience.distributed.manager import DistributedManager |
| from onescience.utils.YParams import YParams |
| from onescience.datapipes.cfd import EagleDatapipe |
|
|
|
|
|
|
| def save_best_model(model, optimizer, checkpoint_dir: str): |
| Path(checkpoint_dir).mkdir(parents=True, exist_ok=True) |
| model_to_save = model.module if hasattr(model, "module") else model |
| torch.save( |
| { |
| "model_state_dict": model_to_save.state_dict(), |
| "optimizer_state_dict": optimizer.state_dict(), |
| }, |
| Path(checkpoint_dir) / "best_model.pth", |
| ) |
|
|
|
|
| def load_best_model(model, checkpoint_dir: str, device: torch.device): |
| ckpt_path = Path(checkpoint_dir) / "best_model.pth" |
| checkpoint = torch.load(ckpt_path, map_location=device, weights_only=False) |
| state_dict = checkpoint.get("model_state_dict", checkpoint) |
| model.load_state_dict(state_dict) |
|
|
|
|
| def setup_logging(rank: int): |
| logging.basicConfig( |
| level=logging.INFO if rank == 0 else logging.WARNING, |
| format="%(asctime)s - %(levelname)s - %(message)s", |
| stream=sys.stdout, |
| force=True, |
| ) |
| return logging.getLogger("train") |
|
|
|
|
| def get_loss(velocity, pressure, output, state_hat, target, mask, alpha): |
| velocity = velocity[:, 1:] |
| pressure = pressure[:, 1:] |
| velocity_hat = state_hat[:, 1:, :, :2] |
| pressure_hat = state_hat[:, 1:, :, 2:] |
| mask = mask[:, 1:].unsqueeze(-1) |
|
|
| loss_velocity = torch.sqrt(((velocity * mask - velocity_hat * mask) ** 2).mean(dim=-1)).mean() |
| loss_pressure = torch.sqrt(((pressure * mask - pressure_hat * mask) ** 2).mean(dim=-1)).mean() |
| mse = nn.MSELoss() |
| loss = mse(target[..., :2] * mask, output[..., :2] * mask) |
| loss = loss + alpha * mse(target[..., 2:] * mask, output[..., 2:] * mask) |
| return {"loss": loss, "MSE_velocity": loss_velocity, "MSE_pressure": loss_pressure} |
|
|
|
|
| def move_batch(x, device): |
| return { |
| "mesh_pos": x["mesh_pos"].to(device), |
| "edges": x["edges"].to(device).long(), |
| "velocity": x["velocity"].to(device), |
| "pressure": x["pressure"].to(device), |
| "node_type": x["node_type"].to(device), |
| "mask": x["mask"].to(device), |
| "cluster": x["cluster"].to(device).long(), |
| "cluster_mask": x["cluster_mask"].to(device).long(), |
| } |
|
|
|
|
| def fix_single_cluster_path(datapipe, cfg_data): |
| if int(cfg_data.data.n_cluster) != 1: |
| return |
|
|
| cluster_path = Path(cfg_data.source.cluster_dir) |
| for dataset_name in ("train_dataset", "val_dataset", "test_dataset"): |
| dataset = getattr(datapipe, dataset_name, None) |
| if dataset is not None and getattr(dataset, "cluster_path", None) is None: |
| dataset.cluster_path = cluster_path |
|
|
|
|
| def validate(model, dataloader, device, alpha, manager): |
| model.eval() |
| total_loss, count = 0.0, 0 |
| with torch.no_grad(): |
| for x in dataloader: |
| if not x: |
| continue |
| batch = move_batch(x, device) |
| state = torch.cat([batch["velocity"], batch["pressure"]], dim=-1) |
| state_hat, output, target = model( |
| batch["mesh_pos"], |
| batch["edges"], |
| state, |
| batch["node_type"], |
| batch["cluster"], |
| batch["cluster_mask"], |
| apply_noise=False, |
| ) |
| dataset = dataloader.dataset |
| state_hat[..., :2], state_hat[..., 2:] = dataset.denormalize( |
| state_hat[..., :2], state_hat[..., 2:] |
| ) |
| velocity, pressure = dataset.denormalize(batch["velocity"], batch["pressure"]) |
| costs = get_loss(velocity, pressure, output, state_hat, target, batch["mask"], alpha) |
| if manager.world_size > 1: |
| dist.all_reduce(costs["loss"], op=dist.ReduceOp.AVG) |
| total_loss += costs["loss"].item() |
| count += 1 |
| return total_loss / max(count, 1) |
|
|
|
|
| def main(): |
| os.chdir(root_path) |
| DistributedManager.initialize() |
| manager = DistributedManager() |
| logger = setup_logging(manager.rank) |
|
|
| config_path = root_path / "config" / "config.yaml" |
| cfg_model = YParams(config_path, "model") |
| cfg_data = YParams(config_path, "datapipe") |
| cfg_train = YParams(config_path, "training") |
|
|
| seed = int(cfg_train.get("seed", 0)) |
| torch.manual_seed(seed) |
| random.seed(seed) |
| np.random.seed(seed) |
|
|
| datapipe = EagleDatapipe(params=cfg_data, distributed=(manager.world_size > 1)) |
| fix_single_cluster_path(datapipe, cfg_data) |
| train_loader, train_sampler = datapipe.train_dataloader() |
| val_loader, val_sampler = datapipe.val_dataloader() |
|
|
| device_name = cfg_train.get("device", "auto") |
| device = manager.device if device_name == "auto" else torch.device(device_name) |
| model = GraphViT(state_size=cfg_model.state_size, w_size=cfg_model.w_size).to(device) |
| if manager.world_size > 1: |
| model = DistributedDataParallel(model, device_ids=[manager.local_rank], output_device=manager.local_rank) |
|
|
| optimizer = torch.optim.Adam(model.parameters(), lr=float(cfg_train.lr)) |
| best_valid_loss = float("inf") |
| best_epoch = 0 |
|
|
| for epoch in range(int(cfg_train.max_epoch)): |
| start = time.time() |
| if manager.world_size > 1: |
| train_sampler.set_epoch(epoch) |
| if val_sampler: |
| val_sampler.set_epoch(epoch) |
|
|
| model.train() |
| train_loss, count = 0.0, 0 |
| pbar = tqdm(train_loader, desc=f"Epoch {epoch + 1}", disable=(manager.rank != 0)) |
| for x in pbar: |
| if not x: |
| continue |
| batch = move_batch(x, device) |
| state = torch.cat([batch["velocity"], batch["pressure"]], dim=-1) |
| state_hat, output, target = model( |
| batch["mesh_pos"], |
| batch["edges"], |
| state, |
| batch["node_type"], |
| batch["cluster"], |
| batch["cluster_mask"], |
| apply_noise=True, |
| ) |
| state_hat[..., :2], state_hat[..., 2:] = train_loader.dataset.denormalize( |
| state_hat[..., :2], state_hat[..., 2:] |
| ) |
| velocity, pressure = train_loader.dataset.denormalize(batch["velocity"], batch["pressure"]) |
| costs = get_loss(velocity, pressure, output, state_hat, target, batch["mask"], cfg_train.loss_alpha) |
|
|
| optimizer.zero_grad() |
| costs["loss"].backward() |
| optimizer.step() |
|
|
| train_loss += costs["loss"].item() |
| count += 1 |
| pbar.set_postfix(loss=f"{costs['loss'].item():.6f}") |
|
|
| train_loss /= max(count, 1) |
| valid_loss = validate(model, val_loader, device, cfg_train.loss_alpha, manager) |
| if manager.rank == 0: |
| logger.info( |
| "Epoch %s/%s | %.2fs | train %.6f | valid %.6f", |
| epoch + 1, |
| cfg_train.max_epoch, |
| time.time() - start, |
| train_loss, |
| valid_loss, |
| ) |
| if valid_loss < best_valid_loss: |
| best_valid_loss = valid_loss |
| best_epoch = epoch |
| save_best_model(model, optimizer, cfg_train.checkpoint_dir) |
| logger.info("Saved checkpoint to %s/best_model.pth", cfg_train.checkpoint_dir) |
| if epoch - best_epoch > int(cfg_train.patience): |
| break |
|
|
| if manager.rank == 0: |
| final_model = GraphViT(state_size=cfg_model.state_size, w_size=cfg_model.w_size).to(device) |
| load_best_model(final_model, cfg_train.checkpoint_dir, device) |
| test_loader, _ = datapipe.test_dataloader() |
| test_loss = validate(final_model, test_loader, device, cfg_train.loss_alpha, manager) |
| logger.info("Final test loss: %.6f", test_loss) |
|
|
| manager.cleanup() |
|
|
|
|
| if __name__ == "__main__": |
| main() |
|
|