CodonTransformer / scripts /slurm /finetune.sh
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#!/bin/bash
#SBATCH --job-name=finetune
#SBATCH --output=your_output_directory/output_%j.out
#SBATCH --error=your_error_directory/error_%j.err
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=4
#SBATCH --gpus-per-node=4
#SBATCH --cpus-per-task=6
#SBATCH --time=15:00:00
#SBATCH --partition=compute_full_node
# Load required modules
module --ignore_cache load cuda/11.4.4
module --ignore_cache load anaconda3
source activate your_environment
# Change to the working directory
cd your_working_directory
# Set environment variables
export CUBLAS_WORKSPACE_CONFIG=:4096:2
export PYTHONPATH="${PWD}/model:${PYTHONPATH:-}"
export NCCL_DEBUG=INFO
export PYTHONFAULTHANDLER=1
# Run the Python script with arguments
stdbuf -oL -eL srun python scripts/finetune.py \
--dataset_dir your_dataset_directory \
--checkpoint_dir your_checkpoint_directory \
--checkpoint_filename finetune.ckpt \
--batch_size 6 \
--max_epochs 15 \
--num_workers 5 \
--accumulate_grad_batches 1 \
--num_gpus 4 \
--learning_rate 0.00005 \
--warmup_fraction 0.1 \
--save_every_n_steps 512 \
--seed 123