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import datetime
import logging
import json
import random
import time
import numpy as np
import os
import pickle
import sys
import torch
import torch.distributed as dist
import torch.nn.functional as F
import yaml
import math # add this
from torch.utils.data import DataLoader
from tqdm import tqdm
from transformers import HfArgumentParser, AutoConfig
from datasets import Dataset, concatenate_datasets
from datasets.distributed import split_dataset_by_node
from src.arguments import ModelArguments, DataArguments, TrainingArguments
from src.data.collator.eval_collator import MultimodalEvalDataCollator
from src.data.eval_dataset.base_eval_dataset import AutoEvalPairDataset, generate_cand_dataset
from src.eval_utils.metrics import RankingMetrics
from src.model.model_analysis import MMEBModel
from src.model.processor import get_backbone_name, load_processor, COLPALI
from src.utils import batch_to_device, print_rank, print_master
import multiprocessing
from multiprocessing import Pool, cpu_count
logging.basicConfig(level=logging.INFO, format='[%(asctime)s] %(levelname)s [%(name)s:%(lineno)s] %(message)s')
logger = logging.getLogger(__name__)
def pad_dataset_to_divisible(dataset, world_size):
num_samples = len(dataset)
if num_samples % world_size == 0:
return dataset, num_samples
num_to_add = world_size - (num_samples % world_size)
padded_size = num_samples + num_to_add
padding_data = dataset.select([i % len(dataset) for i in range(num_to_add)])
padded_dataset = concatenate_datasets([dataset, padding_data])
return padded_dataset, padded_size
def encode_embeddings(
model: MMEBModel,
loader: DataLoader,
training_args: TrainingArguments,
model_args: ModelArguments,
full_dataset: Dataset,
encode_side: str,
description: str = "Encoding"
) -> tuple[np.ndarray, list]:
"""
Encodes embeddings for a given dataset using the model, handling both standard and
late-interaction models in a DDP-safe manner.
"""
local_rank = dist.get_rank() if dist.is_initialized() else 0
world_size = dist.get_world_size() if dist.is_initialized() else 1
# Check if the model is a late-interaction type
is_late_interaction = (model_args.model_backbone == COLPALI)
local_embeds = []
local_gt_infos = []
local_max_len = 0
model.eval()
with torch.no_grad():
for inputs, dataset_info in tqdm(loader, desc=f"{description} (rank {local_rank})", disable=local_rank > 0):
inputs = batch_to_device(inputs, training_args.device)
with torch.autocast(enabled=True, dtype=torch.bfloat16, device_type="cuda"):
# Determine if encoding query or target based on available keys
if encode_side == "qry":
output = model(qry=inputs)
reps = output["qry_reps"].detach()
local_gt_infos.extend(dataset_info) # to retain all information per query
else:
output = model(tgt=inputs)
reps = output["tgt_reps"].detach()
local_gt_infos.extend([info["cand_name"] for info in dataset_info]) # to retain ground-truth labels
if is_late_interaction and reps.dim() == 3:
local_max_len = max(local_max_len, reps.shape[1])
local_embeds.append(reps)
if not local_embeds:
# Handle cases where a rank gets no data
return np.array([]), []
# === DDP Synchronization and Padding for Late-Interaction Models ===
if is_late_interaction:
if dist.is_initialized():
# 1. Find the global maximum sequence length across all ranks
local_max_len_tensor = torch.tensor(local_max_len, device=training_args.device)
dist.all_reduce(local_max_len_tensor, op=dist.ReduceOp.MAX)
global_max_len = local_max_len_tensor.item()
else:
global_max_len = local_max_len
# 2. Pad all local embeddings to the global max length
padded_embeds = []
for reps_batch in local_embeds:
if reps_batch.dim() == 3:
B, L, H = reps_batch.shape
padding_size = global_max_len - L
padded_batch = F.pad(reps_batch, (0, 0, 0, padding_size), "constant", 0)
padded_embeds.append(padded_batch)
else: # Should not happen if model is consistently late-interaction
padded_embeds.append(reps_batch)
embeds_tensor = torch.cat(padded_embeds, dim=0).contiguous()
else: # Standard dense models
embeds_tensor = torch.cat(local_embeds, dim=0).contiguous()
# === Gather embeddings and keys from all ranks ===
if dist.is_initialized() and full_dataset.num_rows >= world_size:
print_master(f"Gathering {encode_side} embeddings across all ranks...")
# Use the more efficient all_gather_into_tensor for tensors
output_shape = list(embeds_tensor.shape)
output_shape[0] = full_dataset.num_rows
embeds_tensor = embeds_tensor.to(training_args.device)
gathered_embeds_tensor = torch.empty(output_shape, dtype=embeds_tensor.dtype, device=training_args.device)
dist.all_gather_into_tensor(gathered_embeds_tensor, embeds_tensor)
final_embeddings = gathered_embeds_tensor.cpu().float().numpy()
# Gather metadata, for which all_gather_object is appropriate
gathered_gt_infos = [None for _ in range(world_size)]
dist.all_gather_object(gathered_gt_infos, local_gt_infos)
all_gt_infos = [key for rank_keys in gathered_gt_infos for key in rank_keys]
else:
all_gt_infos = local_gt_infos
final_embeddings = embeds_tensor.cpu().float().numpy()
return final_embeddings, all_gt_infos
def linear_cka(matrix1, matrix2):
"""
Compute Linear CKA between two matrices X (N, D1) and Y (N, D2).
"""
# Center the matrices
matrix1 = matrix1 - matrix1.mean(dim=0, keepdim=True)
matrix2 = matrix2 - matrix2.mean(dim=0, keepdim=True)
# Compute Gram matrices
gram1 = torch.mm(matrix1, matrix1.t())
gram2 = torch.mm(matrix2, matrix2.t())
# Compute HSIC
hsic_cross = torch.sum(gram1 * gram2)
hsic_1 = torch.sum(gram1 * gram1)
hsic_2 = torch.sum(gram2 * gram2)
# Normalize
cka = hsic_cross / (torch.sqrt(hsic_1) * torch.sqrt(hsic_2))
return cka.item()
def run_layer_analysis(model, dataset, processor, model_args, data_args, training_args, output_dir, num_samples=64):
"""
Run Layer-wise CKA and Similarity analysis on a subset of data.
"""
print_master(f"\n[Analysis] Starting Layer-wise Analysis on {num_samples} samples...")
# 1. Prepare a small subset
subset_indices = list(range(min(len(dataset), num_samples)))
subset = dataset.select(subset_indices)
# We need pairs (Query, Positive Candidate) to measure alignment
# Assuming dataset yields (query_input, candidate_input) or similar.
# But based on existing code, `eval_collator` handles "qry" or "cand" mode.
# We will process Queries and their corresponding Ground Truth Candidates manually.
# Create loaders
from src.data.collator.eval_collator import MultimodalEvalDataCollator
qry_collator = MultimodalEvalDataCollator(processor, model_args, data_args, "qry")
cand_collator = MultimodalEvalDataCollator(processor, model_args, data_args, "cand")
# We need to act as if we are processing the subset.
# For simplicity, we just take the first batch of size num_samples
loader = DataLoader(subset, batch_size=num_samples, collate_fn=qry_collator) # Queries
# Fetch one batch of queries
try:
qry_batch, qry_info = next(iter(loader))
except StopIteration:
return
# Fetch corresponding candidates
# This is tricky because `dataset` might be just queries with metadata.
# We need to construct the candidate batch corresponding to these queries.
# For the sake of CKA, we can just analyze the QUERY Encoder's evolution.
# For Alignment, we need pairs.
# Let's Focus on QUERY Encoder Structure (CKA) first.
qry_batch = batch_to_device(qry_batch, training_args.device)
with torch.no_grad():
with torch.autocast(enabled=True, dtype=torch.bfloat16, device_type="cuda"):
# Shape: [Layers, Batch, Dim]
all_layers_reps = model.encode_all_layers(qry_batch)
num_layers, bsz, dim = all_layers_reps.shape
final_layer_reps = all_layers_reps[-1] # [Batch, Dim]
cka_scores = []
cos_sim_with_final = []
# 2. Compute Metrics
for i in range(num_layers):
current_layer_reps = all_layers_reps[i]
# Metric A: CKA (Structural Similarity to Final Layer)
# Ensure float32 for stability in CKA
cka = linear_cka(current_layer_reps.float(), final_layer_reps.float())
cka_scores.append(cka)
# Metric B: Average Cosine Similarity with Final Layer (Representation Drift)
# Measures how much the vectors change direction individually
cos_sim = F.cosine_similarity(current_layer_reps.float(), final_layer_reps.float(), dim=-1).mean().item()
cos_sim_with_final.append(cos_sim)
# 3. Save Results
results = {
"layers": list(range(1, num_layers + 1)),
"cka_scores": cka_scores,
"cos_sim_with_final": cos_sim_with_final
}
save_path = os.path.join(output_dir, "layer_analysis_results.json")
with open(save_path, "w") as f:
json.dump(results, f, indent=4)
print_master(f"[Analysis] CKA and Similarity results saved to {save_path}")
print_master(f"[Analysis] Layer 12 CKA: {cka_scores[min(11, num_layers-1)]:.4f}")
return results
def main():
if "RANK" in os.environ and dist.is_available() and not dist.is_initialized():
dist.init_process_group(backend="nccl", timeout=datetime.timedelta(minutes=60))
local_rank = dist.get_rank() if dist.is_initialized() else 0
world_size = dist.get_world_size() if dist.is_initialized() else 1
# DEBUG PRINTS for Distributed Setup
print_master("Distributed init debug info:")
print_master(f"RANK: {os.environ.get('RANK')}")
print_master(f"LOCAL_RANK: {os.environ.get('LOCAL_RANK')}")
print_master(f"WORLD_SIZE: {os.environ.get('WORLD_SIZE')}")
print_master(f"MASTER_ADDR: {os.environ.get('MASTER_ADDR')}")
print_master(f"MASTER_PORT: {os.environ.get('MASTER_PORT')}")
if dist.is_initialized():
print_rank(f"dist.get_rank(): {dist.get_rank()}")
print_rank(f"dist.get_world_size(): {dist.get_world_size()}")
for arg in sys.argv:
if arg.startswith("--local-rank="):
rank = arg.split("=")[1]
sys.argv.remove(arg)
sys.argv.append('--local_rank')
sys.argv.append(rank)
parser = HfArgumentParser((ModelArguments, DataArguments, TrainingArguments))
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
model_args: ModelArguments
data_args: DataArguments
training_args: TrainingArguments
os.makedirs(data_args.encode_output_path, exist_ok=True)
# --- Model Loading ---
hf_config = AutoConfig.from_pretrained(model_args.model_name, trust_remote_code=True)
if not getattr(model_args, "model_backbone", None):
model_backbone = get_backbone_name(hf_config=hf_config, model_type=model_args.model_type)
setattr(model_args, 'model_backbone', model_backbone)
setattr(training_args, 'model_backbone', model_backbone)
print_master(f'Model Backbone: {model_args.model_backbone}')
# --- DDP-Safe Model Loading ---
# Step 1: Only the master process (rank 0) downloads the model.
if local_rank == 0:
processor = load_processor(model_args, data_args)
model = MMEBModel.load(model_args, is_trainable=False, processor=processor)
print_master(f"[rank=0] Loading the model from Huggingface: {model_args.model_name}...")
# Step 2: All processes wait here. The non-master processes will pause
# until the master process (rank 0) finishes downloading and exits this barrier.
if torch.distributed.is_initialized():
torch.distributed.barrier()
# Step 3: Now that the model is cached, the non-master processes load it from the local cache.
if local_rank != 0:
print_rank(f"Loading the model from cache...")
processor = load_processor(model_args, data_args)
time.sleep(random.randint(2 * local_rank, 3 * local_rank))
model = MMEBModel.load(model_args, is_trainable=False, processor=processor)
model.eval()
model = model.to(training_args.device, dtype=torch.bfloat16)
# model.set_inference_layers(qry_layers=24, tgt_layers=24)
# # === INSERT ANALYSIS CODE HERE ===
# if local_rank == 0: # Run analysis only on master rank
# # We need a dataset to run analysis. Let's use the first dataset in the config.
# with open(data_args.dataset_config, 'r') as yaml_file:
# temp_configs = yaml.safe_load(yaml_file)
# first_dataset_name = list(temp_configs.keys())[0]
# first_task_config = temp_configs[first_dataset_name]
# if data_args.data_basedir is not None:
# for key in ["image_root", "video_root", "frame_root", "clip_root", "data_path"]:
# if data_args.data_basedir and first_task_config.get(key):
# first_task_config[key] = os.path.join(data_args.data_basedir, first_task_config[key])
# print_master(f"--- Running Layer Analysis on {first_dataset_name} ---")
# analysis_dataset, _ = AutoEvalPairDataset.instantiate(model_args=model_args, data_args=data_args, **first_task_config)
# # Run the analysis
# run_layer_analysis(
# model,
# analysis_dataset,
# processor,
# model_args,
# data_args,
# training_args,
# data_args.encode_output_path
# )
# if dist.is_initialized():
# dist.barrier()
# # === END INSERT ===
# === INSERT ANALYSIS CODE START ===
if local_rank == 0: # Run analysis only on master rank
import numpy as np # Ensure numpy is imported
# Load configs
with open(data_args.dataset_config, 'r') as yaml_file:
analysis_configs = yaml.safe_load(yaml_file)
print_master(f"\n[Global Analysis] Starting Layer-wise Analysis across {len(analysis_configs)} datasets...")
all_datasets_cka = []
all_datasets_cos = []
dataset_names_log = []
# Loop through ALL datasets defined in the yaml
for d_name, d_config in analysis_configs.items():
print_master(f" > Analyzing dataset: {d_name} ...")
# Handle path adjustment
if data_args.data_basedir is not None:
for key in ["image_root", "video_root", "frame_root", "clip_root", "data_path"]:
if d_config.get(key):
d_config[key] = os.path.join(data_args.data_basedir, d_config[key])
# Instantiate dataset
# catch potential errors to avoid crashing the whole analysis if one dataset fails
try:
analysis_dataset, _ = AutoEvalPairDataset.instantiate(model_args=model_args, data_args=data_args, **d_config)
# Run Analysis (Reduced samples per dataset to save time, e.g., 32)
# We collect local results but don't save individual JSONs to keep folder clean (or you can save if you want)
res = run_layer_analysis(
model,
analysis_dataset,
processor,
model_args,
data_args,
training_args,
data_args.encode_output_path,
num_samples=128 # 32 samples per task is sufficient for CKA
)
if res:
all_datasets_cka.append(res["cka_scores"])
all_datasets_cos.append(res["cos_sim_with_final"])
dataset_names_log.append(d_name)
except Exception as e:
print_master(f" [Warning] Failed to analyze {d_name}: {e}")
# Compute Averages
if all_datasets_cka:
avg_cka = np.mean(np.array(all_datasets_cka), axis=0).tolist()
avg_cos = np.mean(np.array(all_datasets_cos), axis=0).tolist()
std_cka = np.std(np.array(all_datasets_cka), axis=0).tolist() # Calculate Variance/StdDev
# Save Global Results
global_results = {
"layers": res["layers"], # Assume all have same layers
"analyzed_datasets": dataset_names_log,
"avg_cka_scores": avg_cka,
"std_cka_scores": std_cka,
"avg_cos_sim": avg_cos,
"individual_cka": all_datasets_cka # Save raw data if you want to plot distribution
}
save_path = os.path.join(data_args.encode_output_path, "global_layer_analysis_avg.json")
with open(save_path, "w") as f:
json.dump(global_results, f, indent=4)
print_master(f"\n[Global Analysis] Completed! Averaged results saved to {save_path}")
print_master(f"[Global Analysis] Avg Layer 12 CKA: {avg_cka[11]:.4f} (Std: {std_cka[11]:.4f})")
else:
print_master("[Global Analysis] No datasets were successfully analyzed.")
if dist.is_initialized():
dist.barrier()
# === INSERT ANALYSIS CODE END ===
with open(data_args.dataset_config, 'r') as yaml_file:
dataset_configs = yaml.safe_load(yaml_file)
# --- Main Evaluation Loop ---
for dataset_idx, (dataset_name, task_config) in enumerate(dataset_configs.items()):
# 0. load dataset
if dist.is_initialized():
dist.barrier()
print_master(f"--- Evaluating {dataset_name} ---")
query_embed_path = os.path.join(data_args.encode_output_path, f"{dataset_name}_qry")
cand_embed_path = os.path.join(data_args.encode_output_path, f"{dataset_name}_tgt")
dataset_info_path = os.path.join(data_args.encode_output_path, f"{dataset_name}_info.jsonl")
do_query = not os.path.exists(query_embed_path) or not os.path.exists(dataset_info_path)
do_cand = not os.path.exists(cand_embed_path)
if do_query or do_cand:
if data_args.data_basedir is not None:
# Construct full paths for data files if --data_basedir is provided
for key in ["image_root", "video_root", "frame_root", "clip_root", "data_path"]:
if data_args.data_basedir and task_config.get(key):
task_config[key] = os.path.join(data_args.data_basedir, task_config[key])
full_eval_qry_dataset, corpus = AutoEvalPairDataset.instantiate(model_args=model_args, data_args=data_args, **task_config)
full_eval_cand_dataset = generate_cand_dataset(full_eval_qry_dataset, corpus)
eval_qry_dataset, eval_cand_dataset = full_eval_qry_dataset, full_eval_cand_dataset
# Pad datasets to be divisible by world_size before splitting
if dist.is_initialized():
padded_qry_dataset, _ = pad_dataset_to_divisible(full_eval_qry_dataset, world_size)
padded_cand_dataset, _ = pad_dataset_to_divisible(full_eval_cand_dataset, world_size)
eval_qry_dataset = split_dataset_by_node(padded_qry_dataset, rank=local_rank, world_size=world_size)
eval_cand_dataset = split_dataset_by_node(padded_cand_dataset, rank=local_rank, world_size=world_size)
else:
padded_qry_dataset, padded_cand_dataset = full_eval_qry_dataset, full_eval_cand_dataset
# --- 1. Compute Query Embeddings ---
if do_query:
print_master("Encoding queries...")
eval_qry_collator = MultimodalEvalDataCollator(processor, model_args, data_args, "qry")
eval_qry_loader = DataLoader(eval_qry_dataset, batch_size=training_args.per_device_eval_batch_size, collate_fn=eval_qry_collator, num_workers=training_args.dataloader_num_workers)
query_embeds, gt_infos = encode_embeddings(model, eval_qry_loader, training_args, model_args, padded_qry_dataset, encode_side="qry", description=f"Queries for {dataset_name}")
query_embeds = query_embeds[:len(full_eval_qry_dataset)] # world_size>1, trim the padded data points
gt_infos = gt_infos[:len(full_eval_qry_dataset)]
if local_rank == 0:
with open(query_embed_path, 'wb') as f:
pickle.dump(query_embeds, f)
with open(dataset_info_path, 'w') as f:
for info in gt_infos:
f.write(json.dumps(info) + '\n')
print_master(f"Saved query embeddings to {query_embed_path}")
if dist.is_initialized():
dist.barrier()
# --- 2. Compute Candidate Embeddings ---
if do_cand:
print_master("Encoding candidates...")
eval_cand_collator = MultimodalEvalDataCollator(processor, model_args, data_args, "cand")
eval_cand_loader = DataLoader(eval_cand_dataset, batch_size=training_args.per_device_eval_batch_size, collate_fn=eval_cand_collator, num_workers=training_args.dataloader_num_workers)
cand_embeds, all_cand_ids = encode_embeddings(model, eval_cand_loader, training_args, model_args, padded_cand_dataset, encode_side="cand", description=f"Candidates for {dataset_name}")
cand_embeds = cand_embeds[:len(full_eval_cand_dataset)] # world_size>1, trim the padded data points
all_cand_ids = all_cand_ids[:len(full_eval_cand_dataset)]
if local_rank == 0:
cand_embed_dict = {cand_id: embed for cand_id, embed in zip(all_cand_ids, cand_embeds)}
with open(cand_embed_path, 'wb') as f: pickle.dump(cand_embed_dict, f)
print_master(f"Saved candidate embeddings to {cand_embed_path}")
if dist.is_initialized():
dist.barrier()
# --- 3. Compute Scores (on master rank only) ---
if local_rank == 0:
score_path = os.path.join(data_args.encode_output_path, f"{dataset_name}_score.json")
if os.path.exists(score_path):
try:
with open(score_path, "r") as f:
score_dict = json.load(f)
print_master(f"Score of {dataset_name} (loaded from previous run): {score_path}")
formatted = {k: f"{v:.4f}" for k, v in score_dict.items()}
print_master(formatted)
continue
except Exception as e:
print_master(f"Failed to load score for {dataset_name}, skipping {dataset_name}")
with open(query_embed_path, 'rb') as f: qry_embeds = pickle.load(f)
with open(cand_embed_path, 'rb') as f: cand_embed_dict = pickle.load(f)
gt_infos = [json.loads(l) for l in open(dataset_info_path)]
pred_dicts = []
rank_against_all_candidates = task_config.get("eval_type", "global") == "global"
if rank_against_all_candidates:
cand_keys = list(cand_embed_dict.keys())
cand_embeds = np.stack([cand_embed_dict[key] for key in cand_keys])
# Handle late-interaction scoring
if qry_embeds.ndim == 3: # Query: [N_q, L_q, H] | Candidate: [N_c, L_c, H]
qry_embed = torch.from_numpy(qry_embeds)
cand_embeds = [torch.from_numpy(np.array(t)) for t in cand_embeds]
scores = processor.score(qry_embed, cand_embeds, batch_size=64) # use ColPali score function
ranked_candids = torch.argsort(-scores, dim=1).cpu().numpy().tolist()
else: # Dense
cosine_scores = np.dot(qry_embeds, cand_embeds.T)
ranked_candids = np.argsort(-cosine_scores, axis=1)
for qid, (ranked_candid, gt_info) in tqdm(enumerate(zip(ranked_candids, gt_infos)), desc=f"Calculating scores for {dataset_name}"):
rel_docids = gt_info["label_name"] if isinstance(gt_info["label_name"], list) else [gt_info["label_name"]]
rel_scores = gt_info["rel_scores"] if "rel_scores" in gt_info else None
assert rel_scores is None or len(rel_docids) == len(rel_scores)
pred_dicts.append({
"prediction": [cand_keys[i] for i in ranked_candid],
"label": rel_docids,
"rel_scores": rel_scores,
})
else:
for qid, (qry_embed, gt_info) in tqdm(enumerate(zip(qry_embeds, gt_infos)), desc=f"Calculating scores for {dataset_name}"):
cand_embeds = np.stack([cand_embed_dict[key] for key in gt_info["cand_names"]])
if qry_embeds.ndim == 3: # Query: [N_q, L_q, H] | Candidate: [N_c, L_c, H]
qry_embed = torch.from_numpy(np.array(qry_embed)).unsqueeze(0)
cand_embeds = [torch.from_numpy(np.array(t)) for t in cand_embeds]
scores = processor.score(qry_embed, cand_embeds, batch_size=1024) # use ColPali score function
ranked_candids = torch.argsort(-scores, dim=1).cpu().numpy().tolist()[0]
else:
cosine_score = np.dot(qry_embed, cand_embeds.T)
ranked_candids = np.argsort(-cosine_score)
rel_docids = gt_info["label_name"] if isinstance(gt_info["label_name"], list) else [gt_info["label_name"]]
rel_scores = gt_info["rel_scores"] if "rel_scores" in gt_info else None
assert rel_scores is None or len(rel_docids) == len(rel_scores)
pred_dicts.append({
"prediction": [gt_info["cand_names"][i] for i in ranked_candids],
"label": rel_docids,
"rel_scores": rel_scores,
})
score_path = os.path.join(data_args.encode_output_path, f"{dataset_name}_score.json")
pred_path = os.path.join(data_args.encode_output_path, f"{dataset_name}_pred.jsonl")
metrics_to_report = task_config["metrics"] if task_config.get("metrics", None) is not None else ["hit", "ndcg", "precision", "recall", "f1", "map", "mrr"]
metrics = RankingMetrics(metrics_to_report)
score_dict = metrics.evaluate(pred_dicts)
formatted = {k: f"{v:.4f}" for k, v in score_dict.items()}
score_dict["num_pred"] = len(pred_dicts)
score_dict["num_data"] = len(gt_infos)
print_master(f"Score of {dataset_name}:")
print_master(formatted)
print_master(f"Outputting final score to: {score_path}")
with open(score_path, "w") as f:
json.dump(score_dict, f, indent=4)
with open(pred_path, "w") as f:
for pred in pred_dicts:
f.write(json.dumps(pred) + '\n')
if __name__ == "__main__":
main()
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