Instructions to use GleghornLab/lymph_node_segmentation with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use GleghornLab/lymph_node_segmentation with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("image-segmentation", model="GleghornLab/lymph_node_segmentation")# Load model directly from transformers import UNetForSegmentation model = UNetForSegmentation.from_pretrained("GleghornLab/lymph_node_segmentation", dtype="auto") - Notebooks
- Google Colab
- Kaggle
Update README.md
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README.md
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@@ -44,8 +44,8 @@ A unet model for multilabel image segmentation trained with sliding window appro
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| Dice | 0.8697 | 0.7635 | 0.8607 | 0.9085 | 0.9461 |
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| IoU | 0.7757 | 0.6174 | 0.7554 | 0.8323 | 0.8977 |
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| F1
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| MCC
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| ROC AUC | 0.9971 | 0.9946 | 0.9983 | 0.9978 | 0.9978 |
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| PR AUC | 0.9412 | 0.8527 | 0.9494 | 0.9720 | 0.9908 |
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| ------------ | -----: | ------: | ------: | ------: | ------: |
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| Dice | 0.7960 | 0.7578 | 0.7830 | 0.7344 | 0.9087 |
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| IoU | 0.6666 | 0.6101 | 0.6433 | 0.5803 | 0.8328 |
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| MCC
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| ROC AUC | 0.9942 | 0.9949 | 0.9975 | 0.9903 | 0.9941 |
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| PR AUC | 0.9117 | 0.8628 | 0.9133 | 0.8985 | 0.9720 |
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| ------------ | -----: | ------: | ------: | ------: | ------: |
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| Dice | 0.8697 | 0.7635 | 0.8607 | 0.9085 | 0.9461 |
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| IoU | 0.7757 | 0.6174 | 0.7554 | 0.8323 | 0.8977 |
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| F1 | 0.8697 | 0.7635 | 0.8607 | 0.9085 | 0.9461 |
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| MCC | 0.8649 | 0.7636 | 0.8588 | 0.9032 | 0.9340 |
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| ROC AUC | 0.9971 | 0.9946 | 0.9983 | 0.9978 | 0.9978 |
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| PR AUC | 0.9412 | 0.8527 | 0.9494 | 0.9720 | 0.9908 |
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| ------------ | -----: | ------: | ------: | ------: | ------: |
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| Dice | 0.7960 | 0.7578 | 0.7830 | 0.7344 | 0.9087 |
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| IoU | 0.6666 | 0.6101 | 0.6433 | 0.5803 | 0.8328 |
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| F1 | 0.7960 | 0.7578 | 0.7830 | 0.7344 | 0.9087 |
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| MCC | 0.7959 | 0.7609 | 0.7891 | 0.7436 | 0.8900 |
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| ROC AUC | 0.9942 | 0.9949 | 0.9975 | 0.9903 | 0.9941 |
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| PR AUC | 0.9117 | 0.8628 | 0.9133 | 0.8985 | 0.9720 |
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