| {"hash":"c8ce5749f2fc9cdbc8e20ac8fc1f69e6ed213e69aded41c2db18a60b3573d998","index":0,"kind":"initialize","payload":{"administration":"retrospective dataset example","budgets":{"controller_calls":40.0,"controller_tokens":128000.0,"gpu_minutes":480.0,"synthesis_slots":24.0,"tool_calls":64.0},"countertargets":[],"episode_id":"real_data_replay","objective":"Reconstruct one observed SNOOPPI interaction with dataset source records.","peptide_format":"linear","requirements":[{"assay":"SNOOPPI_curated","direction":"ge","endpoint":"observed_interaction","required":true,"scale":1.0,"threshold":1.0,"unit":"binary_label"}],"seed":2027,"sequence_lengths":[30],"targets":[{"accession":"SNOOPPI_partner_00202528","compartment":"source annotation","construct_start":1,"id":"snooppi_partner","molecule":{"bonds":[],"c_terminus":"free","modifications":[],"n_terminus":"free","sequence":"MKWVTFISLLLLFSSAYSRGVFRRDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPFDEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEPERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKECCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEKLGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLPDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVVSTQTALA","smiles":null},"species":"Homo sapiens","structure_paths":[]}],"task":"binding"},"previous":"0000000000000000000000000000000000000000000000000000000000000000","time":"2026-09-20T21:30:20.949750+00:00"} |
| {"hash":"f33591b7d105d2024d6f8405da417a89e48fb2358e74e80e82c65330626cd7b4","index":1,"kind":"reserve","payload":{"cost":{"controller_calls":1},"tool":"controller"},"previous":"c8ce5749f2fc9cdbc8e20ac8fc1f69e6ed213e69aded41c2db18a60b3573d998","time":"2026-09-20T21:30:20.950053+00:00"} |
| {"hash":"4f7bd1680b9f448f5e3c602c583f3530d31dfd63293d32b068b26ad1742f95b7","index":2,"kind":"controller","payload":{"decision":{"arguments":{"path":"examples/observed_result.json"},"decision_summary":"Import the observed source label for the real-data replay example.","evidence_ids":[],"expected_observation":"One source-linked interaction label.","hypothesis":"The archived interaction label can be reconstructed with unchanged source records.","stop":false,"tool":"ingest_results"},"provider":"scripted"},"previous":"f33591b7d105d2024d6f8405da417a89e48fb2358e74e80e82c65330626cd7b4","time":"2026-09-20T21:30:20.950223+00:00"} |
| {"hash":"30da6f6571ff67c87d284a18286e9a85f4966b7f230d025138ae0d87d532688d","index":3,"kind":"decision","payload":{"arguments":{"path":"examples/observed_result.json"},"decision_summary":"Import the observed source label for the real-data replay example.","evidence_ids":[],"expected_observation":"One source-linked interaction label.","hypothesis":"The archived interaction label can be reconstructed with unchanged source records.","stop":false,"tool":"ingest_results"},"previous":"4f7bd1680b9f448f5e3c602c583f3530d31dfd63293d32b068b26ad1742f95b7","time":"2026-09-20T21:30:20.950264+00:00"} |
| {"hash":"d4e3165752b2e1b594b418025eb8f36e4c57ed985fbd90e1983903819892280a","index":4,"kind":"reserve","payload":{"cost":{"tool_calls":1},"tool":"ingest_results"},"previous":"30da6f6571ff67c87d284a18286e9a85f4966b7f230d025138ae0d87d532688d","time":"2026-09-20T21:30:20.950292+00:00"} |
| {"hash":"abf95d8b7f2e4c0acc72d8bec6bc35d439b852356aaa1449be820fe5dcca800f","index":5,"kind":"result","payload":{"artifacts":{},"candidates":[{"generator":"SNOOPPI observed interaction","molecule":{"bonds":[],"c_terminus":"free","modifications":[],"n_terminus":"free","sequence":"ACYCRIPACIAGERRYGTCIYQGRLWAFCC","smiles":null},"parent_ids":[],"revision":"a1c75633343e292db8bb25e3356d0b8cd64afa91"}],"evidence":[],"measurements":[{"assay":"SNOOPPI_curated","candidate_id":"7c9f37d06bfb4db71cf9","censor":"none","endpoint":"observed_interaction","kind":"experiment","lower":null,"replicate_id":null,"source_id":"SNOOPPI_positive_row_52","unit":"binary_label","upper":null,"value":1.0}],"message":"Imported curated positive label from the pinned source. No new affinity or peptide experiment was performed."},"previous":"d4e3165752b2e1b594b418025eb8f36e4c57ed985fbd90e1983903819892280a","time":"2026-09-20T21:30:20.950512+00:00"} |
| {"hash":"b8f16d3517645ccf72fd128cf97719bbda09bc05cb5699ae0c8f9f78a6ff626f","index":6,"kind":"reserve","payload":{"cost":{"controller_calls":1},"tool":"controller"},"previous":"abf95d8b7f2e4c0acc72d8bec6bc35d439b852356aaa1449be820fe5dcca800f","time":"2026-09-20T21:30:20.950687+00:00"} |
| {"hash":"6e11bebb88881cf0814f4ebdbeba40a2b57ee0f830793f784148ab5fbb4e0130","index":7,"kind":"controller","payload":{"decision":{"arguments":{},"decision_summary":"All registered workflow steps completed.","evidence_ids":[],"expected_observation":"","hypothesis":"Workflow complete","stop":true,"tool":"stop"},"provider":"scripted"},"previous":"b8f16d3517645ccf72fd128cf97719bbda09bc05cb5699ae0c8f9f78a6ff626f","time":"2026-09-20T21:30:20.950925+00:00"} |
| {"hash":"a84e9c72265a7692c84b8255f1f69479741a8392629f1ba2c34e18dbf2491a0b","index":8,"kind":"decision","payload":{"arguments":{},"decision_summary":"All registered workflow steps completed.","evidence_ids":[],"expected_observation":"","hypothesis":"Workflow complete","stop":true,"tool":"stop"},"previous":"6e11bebb88881cf0814f4ebdbeba40a2b57ee0f830793f784148ab5fbb4e0130","time":"2026-09-20T21:30:20.950967+00:00"} |
| {"hash":"1d4a031ea4e9154647b267389d7f5522e4156afb491656eaa1ef132ccb5bd27d","index":9,"kind":"stop","payload":{"summary":"All registered workflow steps completed."},"previous":"a84e9c72265a7692c84b8255f1f69479741a8392629f1ba2c34e18dbf2491a0b","time":"2026-09-20T21:30:20.950990+00:00"} |
|
|
