examples/snooppi_raw.jsonl

{"SNOOPPI_final_label": "positive", "MI0915_final_label": "positive", "SNOOPPI_Partner_A_ID": "SNOOPPI_partner_00000098", "SNOOPPI_Partner_B_ID": "SNOOPPI_partner_00077234", "SNOOPPI_Pair_ID": "SNOOPPI_pair_00000141", "SNOOPPI_Labeled_Pair_ID": "POSITIVE_SNOOPPI_pair_00000141", "seq_sort": "AAF_MARSLLLPLQILLLSLALETAGEEAQGDKIIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLVCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKHR", "unique_interaction_mi_terms": "MI:0407 (direct interaction)", "partner_A_sequence": "AAF", "partner_B_sequence": "MARSLLLPLQILLLSLALETAGEEAQGDKIIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLVCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKHR", "partner_A_length": "3", "partner_B_length": "253", "partner_A_mol_type": "peptide", "partner_B_mol_type": "protein", "intact_interaction_ids": "EBI-15662552", "n_intact_interaction_ids": "1", "partner_A_intact_interactor_ids": "intact:EBI-15662549", "partner_B_intact_interactor_ids": "intact:EBI-10635674", "partner_A_n_intact_interactor_ids": "1", "partner_B_n_intact_interactor_ids": "1", "partner_A_uniprot_ids": null, "partner_B_uniprot_ids": "P49862-0", "partner_A_gene_names": null, "partner_B_gene_names": "KLK7_HUMAN", "partner_A_species": "9606 (human)", "partner_B_species": "-2 (chemical synthesis)", "mi_scores_all": "0.44", "mi_score_mean": "0.44", "mi_score_min": "0.44", "mi_score_max": "0.44", "assays_unique": "MI:0114 (x-ray crystallography)", "n_assays_unique": "1", "n_papers": "1", "pubmed_ids": "17909180", "publication_years_all": "2007", "publication_year_min": "2007", "publication_year_max": "2007", "feature_relationship_types": null, "feature_relationship_summary": null, "has_mutation_relationship": "False", "has_ptm_relationship": "False", "has_binding_site_relationship": "False", "partner_A_wildtype_sequence_if_feature_modified": null, "partner_B_wildtype_sequence_if_feature_modified": null, "wildtype_seq_sort_if_feature_modified": null, "wildtype_SNOOPPI_final_label": null, "wildtype_MI0915_final_label": null, "exact_sequence_pair_intact_label_summary": "positive", "snooppi_label_transition_from_intact": "confirmed", "seq_sort_origin_categories": "exact_seq_sort_seen_in_original_intact", "unique_expansions": null, "partner_A_go_terms": null, "partner_B_go_terms": null, "partner_A_dip": null, "partner_B_dip": null, "partner_A_ensg": null, "partner_B_ensg": null, "partner_A_ense": null, "partner_B_ense": null, "partner_A_enst": null, "partner_B_enst": null, "partner_A_interpro": null, "partner_B_interpro": null, "partner_A_rcsb_pdb": null, "partner_B_rcsb_pdb": null, "partner_A_reactome": null, "partner_B_reactome": null, "partner_A_host_context": "labels_full = In vitro", "partner_B_host_context": "labels_full = In vitro", "partner_A_sequence_snooppi_degree_by_label": "positive=1; negative=0; unknown=0", "partner_B_sequence_snooppi_degree_by_label": "positive=3; negative=0; unknown=8", "partner_A_sequence_modified_role_counts": null, "partner_B_sequence_modified_role_counts": null, "partner_A_sequence_partner_modified_role_counts": null, "partner_B_sequence_partner_modified_role_counts": null, "partner_A_gene_snooppi_degree_by_label": null, "partner_B_gene_snooppi_degree_by_label": "positive=3; negative=0; unknown=11", "partner_A_gene_modified_role_counts": null, "partner_B_gene_modified_role_counts": "binding_site=3", "partner_A_gene_partner_modified_role_counts": null, "partner_B_gene_partner_modified_role_counts": null}
{"SNOOPPI_final_label": "positive", "MI0915_final_label": "positive", "SNOOPPI_Partner_A_ID": "SNOOPPI_partner_00000205", "SNOOPPI_Partner_B_ID": "SNOOPPI_partner_00077234", "SNOOPPI_Pair_ID": "SNOOPPI_pair_00000247", "SNOOPPI_Labeled_Pair_ID": "POSITIVE_SNOOPPI_pair_00000247", "seq_sort": "AAPF_MARSLLLPLQILLLSLALETAGEEAQGDKIIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLVCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKHR", "unique_interaction_mi_terms": "MI:0407 (direct interaction)", "partner_A_sequence": "AAPF", "partner_B_sequence": "MARSLLLPLQILLLSLALETAGEEAQGDKIIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPLVCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKHR", "partner_A_length": "4", "partner_B_length": "253", "partner_A_mol_type": "peptide", "partner_B_mol_type": "protein", "intact_interaction_ids": "EBI-15662575", "n_intact_interaction_ids": "1", "partner_A_intact_interactor_ids": "intact:EBI-15662572", "partner_B_intact_interactor_ids": "intact:EBI-10635674", "partner_A_n_intact_interactor_ids": "1", "partner_B_n_intact_interactor_ids": "1", "partner_A_uniprot_ids": null, "partner_B_uniprot_ids": "P49862-0", "partner_A_gene_names": null, "partner_B_gene_names": "KLK7_HUMAN", "partner_A_species": "9606 (human)", "partner_B_species": "-2 (chemical synthesis)", "mi_scores_all": "0.44", "mi_score_mean": "0.44", "mi_score_min": "0.44", "mi_score_max": "0.44", "assays_unique": "MI:0114 (x-ray crystallography)", "n_assays_unique": "1", "n_papers": "1", "pubmed_ids": "17909180", "publication_years_all": "2007", "publication_year_min": "2007", "publication_year_max": "2007", "feature_relationship_types": null, "feature_relationship_summary": null, "has_mutation_relationship": "False", "has_ptm_relationship": "False", "has_binding_site_relationship": "False", "partner_A_wildtype_sequence_if_feature_modified": null, "partner_B_wildtype_sequence_if_feature_modified": null, "wildtype_seq_sort_if_feature_modified": null, "wildtype_SNOOPPI_final_label": null, "wildtype_MI0915_final_label": null, "exact_sequence_pair_intact_label_summary": "positive", "snooppi_label_transition_from_intact": "confirmed", "seq_sort_origin_categories": "exact_seq_sort_seen_in_original_intact", "unique_expansions": null, "partner_A_go_terms": null, "partner_B_go_terms": null, "partner_A_dip": null, "partner_B_dip": null, "partner_A_ensg": null, "partner_B_ensg": null, "partner_A_ense": null, "partner_B_ense": null, "partner_A_enst": null, "partner_B_enst": null, "partner_A_interpro": null, "partner_B_interpro": null, "partner_A_rcsb_pdb": null, "partner_B_rcsb_pdb": null, "partner_A_reactome": null, "partner_B_reactome": null, "partner_A_host_context": "labels_full = In vitro", "partner_B_host_context": "labels_full = In vitro", "partner_A_sequence_snooppi_degree_by_label": "positive=1; negative=0; unknown=0", "partner_B_sequence_snooppi_degree_by_label": "positive=3; negative=0; unknown=8", "partner_A_sequence_modified_role_counts": null, "partner_B_sequence_modified_role_counts": null, "partner_A_sequence_partner_modified_role_counts": null, "partner_B_sequence_partner_modified_role_counts": null, "partner_A_gene_snooppi_degree_by_label": null, "partner_B_gene_snooppi_degree_by_label": "positive=3; negative=0; unknown=11", "partner_A_gene_modified_role_counts": null, "partner_B_gene_modified_role_counts": "binding_site=3", "partner_A_gene_partner_modified_role_counts": null, "partner_B_gene_partner_modified_role_counts": null}
{"SNOOPPI_final_label": "positive", "MI0915_final_label": "positive", "SNOOPPI_Partner_A_ID": "SNOOPPI_partner_00000361", "SNOOPPI_Partner_B_ID": "SNOOPPI_partner_00202528", "SNOOPPI_Pair_ID": "SNOOPPI_pair_00000484", "SNOOPPI_Labeled_Pair_ID": "POSITIVE_SNOOPPI_pair_00000484", "seq_sort": "ACYCRIPACIAGERRYGTCIYQGRLWAFCC_MKWVTFISLLLLFSSAYSRGVFRRDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPFDEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEPERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKECCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEKLGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLPDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVVSTQTALA", "unique_interaction_mi_terms": "MI:0407 (direct interaction)", "partner_A_sequence": "ACYCRIPACIAGERRYGTCIYQGRLWAFCC", "partner_B_sequence": "MKWVTFISLLLLFSSAYSRGVFRRDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPFDEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEPERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKECCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEKLGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLPDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVVSTQTALA", "partner_A_length": "30", "partner_B_length": "607", "partner_A_mol_type": "protein", "partner_B_mol_type": "protein", "intact_interaction_ids": "EBI-27090321", "n_intact_interaction_ids": "1", "partner_A_intact_interactor_ids": "intact:EBI-27090284", "partner_B_intact_interactor_ids": "intact:EBI-2296927", "partner_A_n_intact_interactor_ids": "1", "partner_B_n_intact_interactor_ids": "1", "partner_A_uniprot_ids": "P59665-PRO_0000006773", "partner_B_uniprot_ids": "P02769-0", "partner_A_gene_names": "DEF1_HUMAN", "partner_B_gene_names": "ALBU_BOVIN", "partner_A_species": "9606 (human)", "partner_B_species": "9913 (bovin)", "mi_scores_all": "0.44", "mi_score_mean": "0.44", "mi_score_min": "0.44", "mi_score_max": "0.44", "assays_unique": "MI:0053 (fluorescence polarization spectroscopy)", "n_assays_unique": "1", "n_papers": "1", "pubmed_ids": "34487793", "publication_years_all": "2021", "publication_year_min": "2021", "publication_year_max": "2021", "feature_relationship_types": null, "feature_relationship_summary": null, "has_mutation_relationship": "False", "has_ptm_relationship": "False", "has_binding_site_relationship": "False", "partner_A_wildtype_sequence_if_feature_modified": null, "partner_B_wildtype_sequence_if_feature_modified": null, "wildtype_seq_sort_if_feature_modified": null, "wildtype_SNOOPPI_final_label": null, "wildtype_MI0915_final_label": null, "exact_sequence_pair_intact_label_summary": "positive", "snooppi_label_transition_from_intact": "confirmed", "seq_sort_origin_categories": "exact_seq_sort_seen_in_original_intact", "unique_expansions": null, "partner_A_go_terms": null, "partner_B_go_terms": null, "partner_A_dip": null, "partner_B_dip": null, "partner_A_ensg": null, "partner_B_ensg": null, "partner_A_ense": null, "partner_B_ense": null, "partner_A_enst": null, "partner_B_enst": null, "partner_A_interpro": null, "partner_B_interpro": null, "partner_A_rcsb_pdb": null, "partner_B_rcsb_pdb": null, "partner_A_reactome": null, "partner_B_reactome": null, "partner_A_host_context": "labels_full = In vitro", "partner_B_host_context": "labels_full = In vitro", "partner_A_sequence_snooppi_degree_by_label": "positive=1; negative=0; unknown=6", "partner_B_sequence_snooppi_degree_by_label": "positive=15; negative=6; unknown=13", "partner_A_sequence_modified_role_counts": null, "partner_B_sequence_modified_role_counts": null, "partner_A_sequence_partner_modified_role_counts": "mutation=6; binding_site=9", "partner_B_sequence_partner_modified_role_counts": "mutation=7; binding_site=19", "partner_A_gene_snooppi_degree_by_label": "positive=1; negative=0; unknown=10", "partner_B_gene_snooppi_degree_by_label": "positive=15; negative=6; unknown=13", "partner_A_gene_modified_role_counts": null, "partner_B_gene_modified_role_counts": null, "partner_A_gene_partner_modified_role_counts": "mutation=6; binding_site=9", "partner_B_gene_partner_modified_role_counts": "mutation=7; binding_site=19"}
{"SNOOPPI_final_label": "positive", "MI0915_final_label": "positive", "SNOOPPI_Partner_A_ID": "SNOOPPI_partner_00000461", "SNOOPPI_Partner_B_ID": "SNOOPPI_partner_00202320", "SNOOPPI_Pair_ID": "SNOOPPI_pair_00000607", "SNOOPPI_Labeled_Pair_ID": "POSITIVE_SNOOPPI_pair_00000607", "seq_sort": "ADSTITIRGYVRDNR_MKWCKRGYVLAAILALASATIQAADVTITVNGKVVAKPCTVSTTNATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVISITYTYS", "unique_interaction_mi_terms": "MI:0407 (direct interaction)", "partner_A_sequence": "ADSTITIRGYVRDNR", "partner_B_sequence": "MKWCKRGYVLAAILALASATIQAADVTITVNGKVVAKPCTVSTTNATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVISITYTYS", "partner_A_length": "15", "partner_B_length": "167", "partner_A_mol_type": "peptide", "partner_B_mol_type": "protein", "intact_interaction_ids": "EBI-15697509 | EBI-15697566 | EBI-15697585 | EBI-15697620", "n_intact_interaction_ids": "4", "partner_A_intact_interactor_ids": "intact:EBI-15697506", "partner_B_intact_interactor_ids": "intact:EBI-1785843", "partner_A_n_intact_interactor_ids": "1", "partner_B_n_intact_interactor_ids": "1", "partner_A_uniprot_ids": null, "partner_B_uniprot_ids": "P08190-0", "partner_A_gene_names": null, "partner_B_gene_names": "FIMG_ECOLI", "partner_A_species": "83333 (ecoli)", "partner_B_species": "-2 (chemical synthesis)", "mi_scores_all": "0.65", "mi_score_mean": "0.65", "mi_score_min": "0.65", "mi_score_max": "0.65", "assays_unique": "MI:0016 (circular dichroism) | MI:0017 (classical fluorescence spectroscopy) | MI:0071 (molecular sieving) | MI:0114 (x-ray crystallography)", "n_assays_unique": "4", "n_papers": "1", "pubmed_ids": "18400183", "publication_years_all": "2008", "publication_year_min": "2008", "publication_year_max": "2008", "feature_relationship_types": null, "feature_relationship_summary": null, "has_mutation_relationship": "False", "has_ptm_relationship": "False", "has_binding_site_relationship": "False", "partner_A_wildtype_sequence_if_feature_modified": null, "partner_B_wildtype_sequence_if_feature_modified": null, "wildtype_seq_sort_if_feature_modified": null, "wildtype_SNOOPPI_final_label": null, "wildtype_MI0915_final_label": null, "exact_sequence_pair_intact_label_summary": "positive", "snooppi_label_transition_from_intact": "confirmed", "seq_sort_origin_categories": "exact_seq_sort_seen_in_original_intact", "unique_expansions": null, "partner_A_go_terms": null, "partner_B_go_terms": null, "partner_A_dip": null, "partner_B_dip": null, "partner_A_ensg": null, "partner_B_ensg": null, "partner_A_ense": null, "partner_B_ense": null, "partner_A_enst": null, "partner_B_enst": null, "partner_A_interpro": null, "partner_B_interpro": null, "partner_A_rcsb_pdb": null, "partner_B_rcsb_pdb": null, "partner_A_reactome": null, "partner_B_reactome": null, "partner_A_host_context": "labels_full = In vitro", "partner_B_host_context": "labels_full = In vitro", "partner_A_sequence_snooppi_degree_by_label": "positive=1; negative=0; unknown=6", "partner_B_sequence_snooppi_degree_by_label": "positive=2; negative=0; unknown=0", "partner_A_sequence_modified_role_counts": null, "partner_B_sequence_modified_role_counts": null, "partner_A_sequence_partner_modified_role_counts": "binding_site=12", "partner_B_sequence_partner_modified_role_counts": null, "partner_A_gene_snooppi_degree_by_label": null, "partner_B_gene_snooppi_degree_by_label": "positive=2; negative=0; unknown=6", "partner_A_gene_modified_role_counts": null, "partner_B_gene_modified_role_counts": "binding_site=12", "partner_A_gene_partner_modified_role_counts": null, "partner_B_gene_partner_modified_role_counts": null}
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