name: post_fimo
task_type: fimo

fimo_out_dir: dpacman/data_files/processed/fimo/fimo_out_q
processed_output_csv: dpacman/data_files/processed/fimo/post_fimo/fimo_hits_only/remap2022_crm_fimo_output_q_processed.csv
json_dir: dpacman/data_files/raw/genomes/hg38
idmap_path: dpacman/data_files/raw/remap/idmapping_reviewed_true_2025_08_15.tsv
remap_path: /vast/projects/pranam/lab/sophie/DPACMAN/dpacman/data_files/processed/fimo/remap2022_crm_fimo_input.csv

jaspar_boost: 333

keep_fimo_only: true

seeds: [0]
max_protein_len: 1998

debug: false