repository structure

dpacman.egg-info/PKG-INFO

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+Metadata-Version: 2.4
+Name: dpacman
+Version: 0.0.1
+Summary: Generation of DNA-Binding Proteins
+Home-page: https://huggingface.co/ChatterjeeLab/DPACMAN
+Author: 
+Author-email: 
+Dynamic: home-page
+Dynamic: summary

dpacman.egg-info/SOURCES.txt

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+README.md
+setup.py
+dpacman.egg-info/PKG-INFO
+dpacman.egg-info/SOURCES.txt
+dpacman.egg-info/dependency_links.txt
+dpacman.egg-info/top_level.txt

dpacman.egg-info/dependency_links.txt

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+

dpacman.egg-info/top_level.txt

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+

environment.yaml

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+# reasons you might want to use `environment.yaml` instead of `requirements.txt`:
+# - pip installs packages in a loop, without ensuring dependencies across all packages
+#   are fulfilled simultaneously, but conda achieves proper dependency control across
+#   all packages
+# - conda allows for installing packages without requiring certain compilers or
+#   libraries to be available in the system, since it installs precompiled binaries
+# in case of errors look here: https://pytorch.org/get-started/previous-versions/ 
+
+name: dpacman
+
+channels:
+  - conda-forge
+  - defaults
+
+# it is strongly recommended to specify versions of packages installed through conda
+# to avoid situation when version-unspecified packages install their latest major
+# versions which can sometimes break things
+
+# current approach below keeps the dependencies in the same major versions across all
+# users, but allows for different minor and patch versions of packages where backwards
+# compatibility is usually guaranteed
+
+dependencies:
+  - python=3.10
+
+  - pip>=23
+  - pip:
+    - rootutils
+    - pandas==2.2.3
+    - lxml==5.3.0
+    - pymex==0.9.31
+    - gitpython==3.1.44
+    - matplotlib
+    - -e .

setup.py

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+#!/usr/bin/env python
+
+from setuptools import find_packages, setup
+
+setup(
+    name="dpacman",
+    version="0.0.1",
+    description="Generation of DNA-Binding Proteins",
+    author="",
+    author_email="",
+    url="https://huggingface.co/ChatterjeeLab/DPACMAN",
+    packages=find_packages(),
+)