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a887ffc 80b6a2c a887ffc 1927f8f a887ffc 1927f8f 80b6a2c a887ffc | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | #!/bin/bash
# Manually specify values used in the config
main_task="preprocess"
data_task_type="fimo"
timestamp=$(date "+%Y-%m-%d_%H-%M-%S")
run_dir="/vast/projects/pranam/lab/sophie/DPACMAN/logs/${main_task}/${data_task_type}/runs/${timestamp}"
mkdir -p "$run_dir"
nohup python -u -m scripts.preprocess \
hydra.run.dir="${run_dir}" \
data_task=${data_task_type}/post_fimo \
data_task.debug="false" \
data_task.keep_fimo_only="false" \
data_task.processed_output_csv="dpacman/data_files/processed/fimo/post_fimo/all_peaks/remap2022_crm_fimo_output_q_processed.csv" \
> "${run_dir}/run.log" 2>&1 &
echo $! > "${run_dir}/pid.txt" |