# Copyright 2021 AlQuraishi Laboratory # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. import torch def gdt(p1, p2, mask, cutoffs): n = torch.sum(mask, dim=-1) p1 = p1.float() p2 = p2.float() distances = torch.sqrt(torch.sum((p1 - p2)**2, dim=-1)) scores = [] for c in cutoffs: score = torch.sum((distances <= c) * mask, dim=-1) / n scores.append(score) return sum(scores) / len(scores) def gdt_ts(p1, p2, mask): return gdt(p1, p2, mask, [1., 2., 4., 8.]) def gdt_ha(p1, p2, mask): return gdt(p1, p2, mask, [0.5, 1., 2., 4.])