"""Measure tool: drawable canvas, region metrics, and downloads.""" import csv import html import io import os import cv2 import numpy as np import streamlit as st from PIL import Image from config.constants import CANVAS_SIZE, DRAW_TOOLS, TOOL_LABELS from utils.report import heatmap_to_rgb_with_contour, create_measure_pdf_report from ui.heatmaps import make_annotated_heatmap_multi_regions try: from streamlit_drawable_canvas import st_canvas HAS_DRAWABLE_CANVAS = True except (ImportError, AttributeError): HAS_DRAWABLE_CANVAS = False def _obj_to_pts(obj, scale_x, scale_y, heatmap_w, heatmap_h): """Convert a single canvas object to polygon points in heatmap coords. Returns None if invalid.""" obj_type = obj.get("type", "") pts = [] if obj_type == "rect": left = obj.get("left", 0) top = obj.get("top", 0) w = obj.get("width", 0) h = obj.get("height", 0) pts = np.array([ [left, top], [left + w, top], [left + w, top + h], [left, top + h] ], dtype=np.float32) elif obj_type == "circle" or obj_type == "ellipse": left = obj.get("left", 0) top = obj.get("top", 0) width = obj.get("width", 0) height = obj.get("height", 0) radius = obj.get("radius", 0) angle_deg = obj.get("angle", 0) if radius > 0: rx = ry = radius angle_rad = np.deg2rad(angle_deg) cx = left + radius * np.cos(angle_rad) cy = top + radius * np.sin(angle_rad) else: rx = width / 2 if width > 0 else 0 ry = height / 2 if height > 0 else 0 if rx <= 0 or ry <= 0: return None cx = left + rx cy = top + ry if rx <= 0 or ry <= 0: return None n = 32 angles = np.linspace(0, 2 * np.pi, n, endpoint=False) pts = np.column_stack([cx + rx * np.cos(angles), cy + ry * np.sin(angles)]).astype(np.float32) elif obj_type == "path": path = obj.get("path", []) for cmd in path: if isinstance(cmd, (list, tuple)) and len(cmd) >= 3: if cmd[0] in ("M", "L"): pts.append([float(cmd[1]), float(cmd[2])]) elif cmd[0] == "Q" and len(cmd) >= 5: pts.append([float(cmd[3]), float(cmd[4])]) elif cmd[0] == "C" and len(cmd) >= 7: pts.append([float(cmd[5]), float(cmd[6])]) if len(pts) < 3: return None pts = np.array(pts, dtype=np.float32) else: return None pts[:, 0] *= scale_x pts[:, 1] *= scale_y pts = np.clip(pts, 0, [heatmap_w - 1, heatmap_h - 1]).astype(np.int32) return pts def parse_canvas_shapes_to_masks(json_data, canvas_h, canvas_w, heatmap_h, heatmap_w): """Parse drawn shapes and return a list of individual masks (one per shape).""" if not json_data or "objects" not in json_data or not json_data["objects"]: return [] scale_x = heatmap_w / canvas_w scale_y = heatmap_h / canvas_h masks = [] for obj in json_data["objects"]: pts = _obj_to_pts(obj, scale_x, scale_y, heatmap_w, heatmap_h) if pts is None: continue mask = np.zeros((heatmap_h, heatmap_w), dtype=np.uint8) cv2.fillPoly(mask, [pts], 1) masks.append(mask) return masks def build_original_vals(raw_heatmap, pixel_sum, force): """Build original_vals dict for measure tool (full map).""" return { "pixel_sum": pixel_sum, "force": force, "max": float(np.max(raw_heatmap)), "mean": float(np.mean(raw_heatmap)), } def _compute_cell_metrics(raw_heatmap, cell_mask, pixel_sum, force): """Compute metrics over estimated cell area only.""" area_px = int(np.sum(cell_mask)) if area_px == 0: return None, None, None region_values = raw_heatmap * cell_mask cell_pixel_sum = float(np.sum(region_values)) cell_force = cell_pixel_sum * (force / pixel_sum) if pixel_sum > 0 else cell_pixel_sum cell_mean = cell_pixel_sum / area_px return cell_pixel_sum, cell_force, cell_mean def build_cell_vals(raw_heatmap, cell_mask, pixel_sum, force): """Build cell_vals dict for measure tool (estimated cell area). Returns None if invalid.""" cell_pixel_sum, cell_force, cell_mean = _compute_cell_metrics(raw_heatmap, cell_mask, pixel_sum, force) if cell_pixel_sum is None: return None region_values = raw_heatmap * cell_mask region_nonzero = region_values[cell_mask > 0] cell_max = float(np.max(region_nonzero)) if len(region_nonzero) > 0 else 0 return { "pixel_sum": cell_pixel_sum, "force": cell_force, "max": cell_max, "mean": cell_mean, } def compute_region_metrics(raw_heatmap, mask, original_vals=None): """Compute region metrics from mask.""" area_px = int(np.sum(mask)) region_values = raw_heatmap * mask region_nonzero = region_values[mask > 0] force_sum = float(np.sum(region_values)) density = force_sum / area_px if area_px > 0 else 0 region_max = float(np.max(region_nonzero)) if len(region_nonzero) > 0 else 0 region_mean = float(np.mean(region_nonzero)) if len(region_nonzero) > 0 else 0 region_force_scaled = ( force_sum * (original_vals["force"] / original_vals["pixel_sum"]) if original_vals and original_vals.get("pixel_sum", 0) > 0 else force_sum ) return { "area_px": area_px, "force_sum": force_sum, "density": density, "max": region_max, "mean": region_mean, "force_scaled": region_force_scaled, } def _draw_contour_on_image(img_rgb, mask, stroke_color=(255, 0, 0), stroke_width=3): """Draw contour from mask on RGB image. Resizes mask to match img if needed.""" h, w = img_rgb.shape[:2] if mask.shape[:2] != (h, w): mask = cv2.resize(mask.astype(np.uint8), (w, h), interpolation=cv2.INTER_NEAREST) contours, _ = cv2.findContours(mask, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE) if contours: cv2.drawContours(img_rgb, contours, -1, stroke_color, stroke_width) return img_rgb def render_region_metrics_and_downloads(metrics_list, masks, heatmap_rgb, input_filename, key_suffix, has_original_vals, first_region_label=None, bf_img=None, cell_mask=None, colormap_name="Jet"): """ Render per-shape metrics table and download buttons. first_region_label: custom label for first row (e.g. 'Auto boundary'). masks: list of region masks (user-drawn only; used for labeled heatmap with R1, R2...). """ base_name = os.path.splitext(input_filename or "image")[0] st.markdown("**Regions (each selection = one row)**") if has_original_vals: headers = ["Region", "Area", "F.sum", "Force", "Max", "Mean"] csv_rows = [["image", "region"] + headers[1:]] else: headers = ["Region", "Area (px²)", "Force sum", "Mean"] csv_rows = [["image", "region", "Area", "Force sum", "Mean"]] table_rows = [headers] for i, metrics in enumerate(metrics_list, 1): region_label = first_region_label if (i == 1 and first_region_label) else f"Region {i - (1 if first_region_label else 0)}" if has_original_vals: row = [region_label, str(metrics["area_px"]), f"{metrics['force_sum']:.3f}", f"{metrics['force_scaled']:.1f}", f"{metrics['max']:.3f}", f"{metrics['mean']:.4f}"] csv_rows.append([base_name, region_label, metrics["area_px"], f"{metrics['force_sum']:.3f}", f"{metrics['force_scaled']:.1f}", f"{metrics['max']:.3f}", f"{metrics['mean']:.4f}"]) else: row = [region_label, str(metrics["area_px"]), f"{metrics['force_sum']:.4f}", f"{metrics['mean']:.6f}"] csv_rows.append([base_name, region_label, metrics["area_px"], f"{metrics['force_sum']:.4f}", f"{metrics['mean']:.6f}"]) table_rows.append(row) # Render as HTML table to avoid Streamlit's default row/column indices header = table_rows[0] body = table_rows[1:] th_cells = "".join( f'
{html.escape(label)}
' f'